Citrus Sinensis ID: 029984

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHcHHHHHccccccccccccccHHHHHHHHHcccEEEEcccHHHHHHccccccEEccccccccccccccHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHcccccccccccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccEEEHHHHHccccccccccccccccHHHHHHccHHHccccccccHHHHHHHHHcccEEEEcccHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHcccccEEccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MEATSLISLssfaagasslppvlcphgnnrrgllSLTVdqqrcdnigfisskilsfcpkaslrgnleavgvptsvPVRVAHELLQAGhryldvrtpeefsaghatgainvpymyrvgsgmtknLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAawrqnglptep
Flexible Loop (DISEMBL)
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEvstrfrkhdeiivgcqsgkRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Low Complexity Region (SEG)
MEATslislssfaagasslPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Disordered region (IsUnstruct)
********************PVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR********
Disordered Region (DISOPRED)
*******SLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLR***********VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE**TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT**
Disordered Region (DISEMBL)
********LSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Disordered Region (DISPRO)
*******************PPVLCPH*NNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q38853	182	Rhodanese-like domain-con	yes	no	0.940	0.950	0.539	3e-48
P27626	183	Senescence-associated pro	N/A	no	0.608	0.612	0.696	9e-44
Q39129	120	Thiosulfate sulfurtransfe	no	no	0.614	0.941	0.690	4e-41
Q9FKW8	136	Thiosulfate sulfurtransfe	no	no	0.586	0.794	0.463	4e-24
Q8RUD6	169	Rhodanese-like domain-con	no	no	0.581	0.633	0.401	5e-20
F4IPI4	156	Rhodanese-like domain-con	no	no	0.760	0.897	0.326	2e-16
Q94A65	224	Rhodanese-like domain-con	no	no	0.592	0.486	0.310	6e-09
Q7MQ91	106	Thiosulfate sulfurtransfe	yes	no	0.516	0.896	0.303	6e-07
Q8DD53	106	Thiosulfate sulfurtransfe	yes	no	0.516	0.896	0.303	6e-07
Q59WH7	438	Adenylyltransferase and s	N/A	no	0.461	0.194	0.333	7e-07

>sp|Q38853|STR15_ARATH Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1

 Score =  191 bits (484), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 103/191 (53%), Positives = 126/191 (65%), Gaps = 18/191 (9%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHGN------NRRGLLSLTVDQQRCDNIGFISSKIL 54
           ME T+  + S     +S++ P L   G+       RRG++   V   R  N  +  +   
Sbjct: 1   METTAFNTTSRIGNWSSAISPPLQTCGSFKCQLPTRRGVI---VADLRNSNFRWRKATTT 57

Query: 55  SFCPKASLRGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
           S       RGN+  EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPY
Sbjct: 58  S-------RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPY 110

Query: 113 MYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 172
           MYRVGSGM KN  F+ +VS+ FRKHDEII+GC+SG+ S MA+TDLL AGF  ITDIAGG+
Sbjct: 111 MYRVGSGMVKNPSFLRQVSSHFRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGY 170

Query: 173 AAWRQNGLPTE 183
            AW +N LP E
Sbjct: 171 VAWTENELPVE 181

Arabidopsis thaliana (taxid: 3702)

>sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1

 Score =  176 bits (445), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 95/112 (84%)

Query: 72  PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
           PTSVPVRVA EL QAG+++LDVRTP+EFS GH + AINVPYMYRVGSGM KN  F+ +VS
Sbjct: 71  PTSVPVRVARELAQAGYKHLDVRTPDEFSIGHPSRAINVPYMYRVGSGMVKNPSFLRQVS 130

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
           + FRKHDEII+GC+SG+RS+MA+T+LL AGF G+TDIAGG+  W +N LP E
Sbjct: 131 SHFRKHDEIIIGCESGERSLMASTELLTAGFTGVTDIAGGYVPWTENELPVE 182

Is thought to act during the early stages of leaf senescence.

Raphanus sativus (taxid: 3726)

>sp|Q39129|STR16_ARATH Thiosulfate sulfurtransferase 16, chloroplastic OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2

 Score =  167 bits (423), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 92/113 (81%)

Query: 71  VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct: 7   VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQV 66

Query: 131 STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
           S+ F + D IIVGCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct: 67  SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 119

Thought to act during the early stages of leaf senescence. Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9FKW8|STR18_ARATH Thiosulfate sulfurtransferase 18 OS=Arabidopsis thaliana GN=STR18 PE=1 SV=1

 Score =  110 bits (276), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 71/110 (64%), Gaps = 2/110 (1%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVS 131
           SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     G  KN +F+E+VS
Sbjct: 16  SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVS 75

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 181
           +     D+I+VGCQSG RS+ A T+L+ AG+  + ++ GG+ AW  +  P
Sbjct: 76  SLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNVGGGYLAWVDHSFP 125

Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8RUD6|STR19_ARATH Rhodanese-like domain-containing protein 19, mitochondrial OS=Arabidopsis thaliana GN=STR19 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 63/107 (58%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           +V V  A   L  GHRYLDVRT EEF+  H   A+N+PYM++   G   N  F+ +V++ 
Sbjct: 43  TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQVASV 102

Query: 134 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGL 180
            +K + +IV C +G R   A  DLLN G+  + ++ GG++AW   G 
Sbjct: 103 CKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAGF 149

Arabidopsis thaliana (taxid: 3702)

>sp|F4IPI4|STR17_ARATH Rhodanese-like domain-containing protein 17 OS=Arabidopsis thaliana GN=STR17 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 4/144 (2%)

Query: 44  DNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRV--AHELLQAGHRYLDVRTPEEFSA 101
           D++  + S +L F     L     ++  P  + + V  A +LL +G+ +LDVRT EEF  
Sbjct: 2   DSLHVLRSFLLLFIVFNHLPRTTTSMSEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKK 61

Query: 102 GH--ATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN 159
           GH  +    NVPY      G   N  F++ VS+   + D +I+GC+SG RS+ A   L++
Sbjct: 62  GHVDSENVFNVPYWLYTPQGQEINPNFLKHVSSLCNQTDHLILGCKSGVRSLHATKFLVS 121

Query: 160 AGFAGITDIAGGFAAWRQNGLPTE 183
           +GF  + ++ GG+ AW     P +
Sbjct: 122 SGFKTVRNMDGGYIAWVNKRFPVK 145

Arabidopsis thaliana (taxid: 3702)

>sp|Q94A65|STR14_ARATH Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 36/145 (24%)

Query: 74  SVPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINVPYMYR----------------- 115
           SV V+ A  L +  +   LDVR   E+ AGH  GAINV  MYR                 
Sbjct: 76  SVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVE-MYRLIREWTAWDIARRLGFA 134

Query: 116 ---VGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG--------------KRSMMAATDLL 158
              + SG  +N +F++ V  +  K  +IIV C S                RS++AA  L+
Sbjct: 135 FFGIFSGTEENPEFIQSVEAKLDKEAKIIVACSSAGTMKPTQNLPEGQQSRSLIAAYLLV 194

Query: 159 NAGFAGITDIAGGFAAWRQNGLPTE 183
             G+  +  + GG   W + GLP E
Sbjct: 195 LNGYKNVFHLEGGIYTWGKEGLPVE 219

Arabidopsis thaliana (taxid: 3702)

>sp|Q7MQ91|GLPE_VIBVY Thiosulfate sulfurtransferase GlpE OS=Vibrio vulnificus (strain YJ016) GN=glpE PE=3 SV=1

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 17/112 (15%)

Query: 75  VPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN--LKFVEEVS 131
           + V+ AH L+  G  R +D+R P+ F+  HA  A +          +T +  + F+++V 
Sbjct: 7   IDVQGAHALISRGEARLVDIRDPQSFAVAHAQSAFH----------LTNDSIVNFMQQVE 56

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
                   ++V C  G  S  AA  L+N GF  +  + GGF AW +  LP E
Sbjct: 57  FE----QPVLVMCYHGISSQGAAQYLVNQGFEEVYSVDGGFEAWHRASLPVE 104

Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8DD53|GLPE_VIBVU Thiosulfate sulfurtransferase GlpE OS=Vibrio vulnificus (strain CMCP6) GN=glpE PE=3 SV=1

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 17/112 (15%)

Query: 75  VPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN--LKFVEEVS 131
           + V+ AH L+  G  R +D+R P+ F+  HA  A +          +T +  + F+++V 
Sbjct: 7   IDVQGAHALISRGEARLVDIRDPQSFAVAHAQSAFH----------LTNDSIVNFMQQVE 56

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
                   ++V C  G  S  AA  L+N GF  +  + GGF AW +  LP E
Sbjct: 57  FE----QPVLVMCYHGISSQGAAQYLVNQGFEEVYSVDGGFEAWHRASLPVE 104

Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.

Vibrio vulnificus (taxid: 672)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q59WH7|UBA4_CANAL Adenylyltransferase and sulfurtransferase UBA4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=UBA4 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 88  HRYLDVRTPEEFSAGHATGAINVPY--MYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ 145
           H  +DVR  E+F   H   AINV +   +R    + +   ++ + ST   K DEI V C+
Sbjct: 344 HILIDVRPREQFQITHLPNAINVQWDPTFRKADAIEQ---YLPDDST---KDDEIYVVCR 397

Query: 146 SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN 178
            G  S +AA  L+  G+  + DI GG   W  +
Sbjct: 398 FGNDSQLAAKKLIGMGYPNVRDIIGGLDKWSDD 430

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Acts by mediating the C-terminal thiocarboxylation of sulfur carrier URM1. Its N-terminus first activates URM1 as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 to form thiocarboxylation (-COSH) of its C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
224133954	180	predicted protein [Populus trichocarpa]	0.967	0.988	0.701	4e-65
255579783	182	Senescence-associated protein DIN1, puta	0.978	0.989	0.695	1e-63
351728052	186	uncharacterized protein LOC100305968 [Gl	0.733	0.725	0.748	8e-54
357483967	185	Senescence-associated protein DIN1 [Medi	0.733	0.729	0.75	2e-53
351726216	185	uncharacterized protein LOC100499831 [Gl	0.733	0.729	0.748	6e-53
359497218	177	PREDICTED: senescence-associated protein	0.815	0.847	0.677	7e-53
388501622	179	unknown [Lotus japonicus]	0.733	0.754	0.727	2e-52
449434108	184	PREDICTED: rhodanese-like domain-contain	0.880	0.880	0.626	4e-48
7340289	150	OP1 [Cucumis sativus]	0.804	0.986	0.655	3e-47
147782977	176	hypothetical protein VITISV_010789 [Viti	0.788	0.823	0.638	3e-47

>gi|224133954|ref|XP_002327720.1| predicted protein [Populus trichocarpa] gi|222836805|gb|EEE75198.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 129/184 (70%), Positives = 148/184 (80%), Gaps = 6/184 (3%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHG-NNRRGLLSLTVDQQRCDNIGFISSKILSFCPK 59
           M A +++   S +  +++L PVLCP   N RRG+ +  V+ +RC +I  I+ K LSF PK
Sbjct: 1   MAAKAVVCYGS-STSSTTLRPVLCPQQLNKRRGVFA--VNSRRC-SIN-INHKSLSFRPK 55

Query: 60  ASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG 119
            SLR NLEA G+PTSVPVRVAHEL QAGHRYLDVRTP+EFS GHA GAIN+PYMYRVGSG
Sbjct: 56  TSLRWNLEATGIPTSVPVRVAHELHQAGHRYLDVRTPDEFSTGHAAGAINIPYMYRVGSG 115

Query: 120 MTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 179
           MTKN KFVEEVS+ FRKHDEIIVGCQ GKRSMMAATDLL AGF  +TDIAGGFAAW QNG
Sbjct: 116 MTKNPKFVEEVSSHFRKHDEIIVGCQLGKRSMMAATDLLAAGFTAVTDIAGGFAAWTQNG 175

Query: 180 LPTE 183
           LPT+
Sbjct: 176 LPTD 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579783|ref|XP_002530729.1| Senescence-associated protein DIN1, putative [Ricinus communis] gi|223529693|gb|EEF31635.1| Senescence-associated protein DIN1, putative [Ricinus communis]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/184 (69%), Positives = 150/184 (81%), Gaps = 4/184 (2%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLT-VDQQRCDNIGFISSKILSFCPK 59
           MEA S++S ++F +  +SL P  CP   N R LL L  ++  R  +IG I+ K +SFCPK
Sbjct: 1   MEAKSIVSSATFTS--TSLCPSFCPSNLNNRKLLLLPLINNPRRLSIG-INQKSVSFCPK 57

Query: 60  ASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG 119
           A LRGNLEAVGVPTSVPVRVAHELL AGHRYLDVRTPEEFSAGH  GAIN+PYMYRVGSG
Sbjct: 58  AGLRGNLEAVGVPTSVPVRVAHELLLAGHRYLDVRTPEEFSAGHVVGAINIPYMYRVGSG 117

Query: 120 MTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 179
           M KN KF+E+VS+ F K++EII+GCQSGKRSMMAATDLL+AG+  +TDIAGG+AAW QNG
Sbjct: 118 MKKNTKFLEQVSSHFGKYNEIIIGCQSGKRSMMAATDLLSAGYTAVTDIAGGYAAWTQNG 177

Query: 180 LPTE 183
           LPTE
Sbjct: 178 LPTE 181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728052|ref|NP_001235646.1| uncharacterized protein LOC100305968 [Glycine max] gi|255627141|gb|ACU13915.1| unknown [Glycine max]

 Score =  214 bits (546), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 101/135 (74%), Positives = 117/135 (86%)

Query: 49  ISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAI 108
           +  K  +F  +ASL+GNLEA+ VPTSVPVRVA+ELL AGHRYLDVRTPEEF AGHA GAI
Sbjct: 51  VPPKFPNFRREASLQGNLEAIRVPTSVPVRVAYELLLAGHRYLDVRTPEEFDAGHAPGAI 110

Query: 109 NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 168
           N+PYM+RVGSGMTKN  F+ EVS++FRK DEIIVGC+ GKRSMMAA+DLL AGF G+TD+
Sbjct: 111 NIPYMFRVGSGMTKNSNFIREVSSQFRKDDEIIVGCELGKRSMMAASDLLAAGFTGLTDM 170

Query: 169 AGGFAAWRQNGLPTE 183
           AGG+AAW QNGLPTE
Sbjct: 171 AGGYAAWTQNGLPTE 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483967|ref|XP_003612270.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|217071246|gb|ACJ83983.1| unknown [Medicago truncatula] gi|355513605|gb|AES95228.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|388495624|gb|AFK35878.1| unknown [Medicago truncatula]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 102/136 (75%), Positives = 114/136 (83%), Gaps = 1/136 (0%)

Query: 49  ISSKILSFCPKASLRGNLE-AVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA 107
           +  K  +F     L+GNLE  VGVPTSVPVRVAHELL AGH+YLDVRT EEF+AGHA GA
Sbjct: 49  VQPKFSNFRTMCGLKGNLEEVVGVPTSVPVRVAHELLLAGHKYLDVRTTEEFNAGHAPGA 108

Query: 108 INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITD 167
           IN+PYMY+VGSGMTKN  FV+EVS+ FRK DE+IVGCQ GKRSMMAATDLL AGF G+TD
Sbjct: 109 INIPYMYKVGSGMTKNSNFVKEVSSHFRKEDEVIVGCQLGKRSMMAATDLLAAGFTGLTD 168

Query: 168 IAGGFAAWRQNGLPTE 183
           IAGG+AAW QNGLPTE
Sbjct: 169 IAGGYAAWTQNGLPTE 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726216|ref|NP_001236607.1| uncharacterized protein LOC100499831 [Glycine max] gi|255626991|gb|ACU13840.1| unknown [Glycine max]

 Score =  212 bits (539), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 101/135 (74%), Positives = 116/135 (85%)

Query: 49  ISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAI 108
           +  K  SF  +A+L+GNLEAV VPTSVPVRVA+ELL AGHRYLDV TPEEF+AGHA GAI
Sbjct: 50  VPPKFPSFRREAALQGNLEAVRVPTSVPVRVAYELLLAGHRYLDVGTPEEFNAGHAPGAI 109

Query: 109 NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDI 168
           N+PYM+RVGSGMTKN  F+ EVS+ FRK DEIIVGC+ GKRSMMAA+DLL AGF G+TD+
Sbjct: 110 NIPYMFRVGSGMTKNSNFIREVSSNFRKEDEIIVGCELGKRSMMAASDLLAAGFTGLTDM 169

Query: 169 AGGFAAWRQNGLPTE 183
           AGG+AAW QNGLPTE
Sbjct: 170 AGGYAAWTQNGLPTE 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497218|ref|XP_002271073.2| PREDICTED: senescence-associated protein DIN1-like [Vitis vinifera] gi|296088206|emb|CBI35721.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 105/155 (67%), Positives = 116/155 (74%), Gaps = 5/155 (3%)

Query: 29  NRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGH 88
           N R L  L  + QRC     +      FC   + RGNLE+ GVPTSVPVRVA ELLQAGH
Sbjct: 27  NFRCLSPLKANPQRC-----VVGGTKRFCRVVAARGNLESTGVPTSVPVRVALELLQAGH 81

Query: 89  RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148
           RYLDVRTPEEFSAGHA+GAINVPYM R GSGM KN KF+ EVS+ FRK DEIIVGCQ GK
Sbjct: 82  RYLDVRTPEEFSAGHASGAINVPYMLRFGSGMAKNPKFLVEVSSHFRKDDEIIVGCQKGK 141

Query: 149 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
           RS+MA  DLL AGF  +TDIAGG+ AW QNGLPT+
Sbjct: 142 RSLMAVNDLLAAGFTAVTDIAGGYDAWSQNGLPTD 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501622|gb|AFK38877.1| unknown [Lotus japonicus]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 114/136 (83%), Gaps = 1/136 (0%)

Query: 49  ISSKILSFCPKASLRGNLEAVGV-PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA 107
           +  K  +F  + ++  NLEAVGV PTSVPVRVAHELL AGH+YLDVRTPEEF AGHA GA
Sbjct: 43  VQPKFQTFRVEGAMNQNLEAVGVVPTSVPVRVAHELLLAGHKYLDVRTPEEFDAGHAPGA 102

Query: 108 INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITD 167
           IN+PYM++VGSGMTKN  FV+E S++FRK DEIIVGCQ GKRSMMAATDLL +GF G+TD
Sbjct: 103 INIPYMFKVGSGMTKNSNFVKEASSQFRKEDEIIVGCQLGKRSMMAATDLLASGFTGVTD 162

Query: 168 IAGGFAAWRQNGLPTE 183
           IAGG+AAW Q GLPTE
Sbjct: 163 IAGGYAAWTQTGLPTE 178

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434108|ref|XP_004134838.1| PREDICTED: rhodanese-like domain-containing protein 15, chloroplastic-like [Cucumis sativus] gi|449491287|ref|XP_004158850.1| PREDICTED: rhodanese-like domain-containing protein 15, chloroplastic-like [Cucumis sativus]

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 104/166 (62%), Positives = 118/166 (71%), Gaps = 4/166 (2%)

Query: 22  VLCPHGNN--RRGLL--SLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPV 77
           +L P+ NN   RG L   +T   QR      IS K  S    A LR  LEA  VPTSVPV
Sbjct: 18  LLLPNTNNLTSRGRLLPMITGSLQRRRRDSAISYKHWSTSRNAVLREELEATAVPTSVPV 77

Query: 78  RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
           RVA ELLQAG RYLDVRTPEE+S GHA GAIN+PYMYRVGSGMT+N  F+ EV+  FRK 
Sbjct: 78  RVALELLQAGQRYLDVRTPEEYSVGHAPGAINIPYMYRVGSGMTRNPHFLAEVAIYFRKD 137

Query: 138 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
           DEIIVGC SGKRS+MAA DLL +G+  +TDIAGG+ AW +NGLP E
Sbjct: 138 DEIIVGCLSGKRSLMAAADLLASGYNYVTDIAGGYEAWSRNGLPME 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7340289|gb|AAF61174.1|AF245222_1 OP1 [Cucumis sativus]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/148 (65%), Positives = 109/148 (73%)

Query: 36  LTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRT 95
           +T   QR      IS K  S    A LR  LEA  VPTSVPVRVA ELLQAG RYLDVRT
Sbjct: 2   ITGSLQRRRRDSAISYKHWSTSRNAVLREELEATAVPTSVPVRVALELLQAGQRYLDVRT 61

Query: 96  PEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAAT 155
           PEE+S GHA GAIN+PYMYRVGSGMT+N  F+ EV+  FRK DEIIVGC SGKRS+MAA 
Sbjct: 62  PEEYSVGHAPGAINIPYMYRVGSGMTRNPHFLAEVAIYFRKDDEIIVGCLSGKRSLMAAA 121

Query: 156 DLLNAGFAGITDIAGGFAAWRQNGLPTE 183
           DLL +G+  +TDIAGG+ AW +NGLP E
Sbjct: 122 DLLASGYNYVTDIAGGYEAWSRNGLPME 149

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782977|emb|CAN72959.1| hypothetical protein VITISV_010789 [Vitis vinifera]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 99/155 (63%), Positives = 110/155 (70%), Gaps = 10/155 (6%)

Query: 29  NRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGH 88
           N R L  L  + QRC     +       C   + RGNLE+ GVPTSVPVRVA ELLQAGH
Sbjct: 31  NFRCLSPLKANPQRC-----VVGGTKRLCXVVAARGNLESTGVPTSVPVRVALELLQAGH 85

Query: 89  RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148
           R     TPEEFSAGHA+GAINVPYM R GSGM KN KF+ EVS+ FRK DEIIVGCQ GK
Sbjct: 86  R-----TPEEFSAGHASGAINVPYMLRFGSGMAKNPKFLVEVSSHFRKDDEIIVGCQKGK 140

Query: 149 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
           RS+MA  DLL AGF  +TDIAGG+ AW QNGLPT+
Sbjct: 141 RSLMAVNDLLAAGFTAVTDIAGGYDAWSQNGLPTD 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
UNIPROTKB|B2C7Y6	185	NRIP1 "Chloroplast N receptor-	0.771	0.767	0.650	1e-43
TAIR|locus:2128038	182	SEN1 "AT4G35770" [Arabidopsis	0.657	0.664	0.715	1e-43
TAIR|locus:2156937	120	STR16 "AT5G66040" [Arabidopsis	0.614	0.941	0.690	3.4e-38
TAIR|locus:2156882	138	STR18 "AT5G66170" [Arabidopsis	0.652	0.869	0.432	3.4e-22
TAIR|locus:505006261	169	AT2G21045 [Arabidopsis thalian	0.576	0.627	0.405	1.9e-19
TAIR|locus:2827795	156	AT2G17850 "AT2G17850" [Arabido	0.760	0.897	0.326	2.9e-16
UNIPROTKB|Q607E4	120	MCA1816 "Sulfurtransferase" [M	0.440	0.675	0.468	2.4e-12
UNIPROTKB|Q3Z6P8	144	DET1392 "Sulfurtransferase" [D	0.445	0.569	0.408	1.2e-10
TIGR_CMR|DET_1392	144	DET_1392 "rhodanese-like domai	0.445	0.569	0.408	1.2e-10
UNIPROTKB|Q8ECN1	132	SO_3105 "Periplasmic rhodanese	0.516	0.719	0.339	7.6e-09

UNIPROTKB|B2C7Y6 NRIP1 "Chloroplast N receptor-interacting protein 1" [Nicotiana benthamiana (taxid:4100)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 93/143 (65%), Positives = 109/143 (76%)

Query:    41 QRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFS 100
             Q+  N G  S++   F   A++   ++   VPTSVPVRVA ELLQAGHRYLDVRT EEFS
Sbjct:    43 QKRRNFGN-SNRTPGFSWMATVGEKVQVSTVPTSVPVRVALELLQAGHRYLDVRTAEEFS 101

Query:   101 AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
              GHA GAIN+PYM+R+GSGM KN  F E+V   F K DEIIVGCQ GKRS MAATDLL A
Sbjct:   102 DGHAPGAINIPYMFRIGSGMIKNPNFAEQVLEHFGKDDEIIVGCQLGKRSFMAATDLLAA 161

Query:   161 GFAGITDIAGGFAAWRQNGLPTE 183
             GF+G+TDIAGG+AAW +NGLPT+
Sbjct:   162 GFSGVTDIAGGYAAWTENGLPTD 184

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2128038 SEN1 "AT4G35770" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 88/123 (71%), Positives = 101/123 (82%)

Query:    63 RGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGM 120
             RGN+  EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPYMYRVGSGM
Sbjct:    59 RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPYMYRVGSGM 118

Query:   121 TKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGL 180
              KN  F+ +VS+ FRKHDEII+GC+SG+ S MA+TDLL AGF  ITDIAGG+ AW +N L
Sbjct:   119 VKNPSFLRQVSSHFRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGYVAWTENEL 178

Query:   181 PTE 183
             P E
Sbjct:   179 PVE 181

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=IEP;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2156937 STR16 "AT5G66040" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 78/113 (69%), Positives = 92/113 (81%)

Query:    71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
             VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct:     7 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQV 66

Query:   131 STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
             S+ F + D IIVGCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct:    67 SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 119

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TAIR|locus:2156882 STR18 "AT5G66170" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 54/125 (43%), Positives = 77/125 (61%)

Query:    61 SLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGS 118
             S+  + +A  V  SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     
Sbjct:     4 SISSSTKAEEV-VSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ 62

Query:   119 GMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 176
             G  KN +F+E+VS+     D+I+VGCQSG RS+ A T+L+ A  G+  + ++ GG+ AW 
Sbjct:    63 GRVKNQEFLEQVSSLLNPADDILVGCQSGARSLKATTELVAAVSGYKKVRNVGGGYLAWV 122

Query:   177 QNGLP 181
              +  P
Sbjct:   123 DHSFP 127

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:505006261 AT2G21045 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 43/106 (40%), Positives = 63/106 (59%)

Query:    74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
             +V V  A   L  GHRYLDVRT EEF+  H   A+N+PYM++   G   N  F+ +V++ 
Sbjct:    43 TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQVASV 102

Query:   134 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 179
              +K + +IV C +G R   A  DLLN G+  + ++ GG++AW   G
Sbjct:   103 CKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAG 148

GO:0005737 "cytoplasm" evidence=ISM

GO:0007568 "aging" evidence=ISS;TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2827795 AT2G17850 "AT2G17850" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 47/144 (32%), Positives = 76/144 (52%)

Query:    44 DNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRV--AHELLQAGHRYLDVRTPEEFSA 101
             D++  + S +L F     L     ++  P  + + V  A +LL +G+ +LDVRT EEF  
Sbjct:     2 DSLHVLRSFLLLFIVFNHLPRTTTSMSEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKK 61

Query:   102 GH--ATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN 159
             GH  +    NVPY      G   N  F++ VS+   + D +I+GC+SG RS+ A   L++
Sbjct:    62 GHVDSENVFNVPYWLYTPQGQEINPNFLKHVSSLCNQTDHLILGCKSGVRSLHATKFLVS 121

Query:   160 AGFAGITDIAGGFAAWRQNGLPTE 183
             +GF  + ++ GG+ AW     P +
Sbjct:   122 SGFKTVRNMDGGYIAWVNKRFPVK 145

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

UNIPROTKB|Q607E4 MCA1816 "Sulfurtransferase" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 44/94 (46%), Positives = 57/94 (60%)

Query:    91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDE-IIVGCQSGK 148
             LDVR PEE++AGH  GAIN+P       G+   ++F  E    F+ K D  I+V CQSG 
Sbjct:    34 LDVREPEEYAAGHLPGAINIP------RGV---VEFRIETHPVFQGKKDAAIVVYCQSGL 84

Query:   149 RSMMAATDLLNA-GFAGITDIAGGFAAWRQNGLP 181
             RS +A TD+L   G+ G   +AGGF AW + GLP
Sbjct:    85 RSTLA-TDILQQLGWRGTVSMAGGFKAWIEGGLP 117

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z6P8 DET1392 "Sulfurtransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 38/93 (40%), Positives = 50/93 (53%)

Query:    91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
             LDVRTP E++ GH  GA+N+ Y Y           F   +S  F K    +V C++G RS
Sbjct:    62 LDVRTPSEYAQGHIPGAVNLDY-YA---------SFEASLSA-FDKTKTYLVYCRTGNRS 110

Query:   151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
               AA  +L+ GFA I ++ GG  AW   GLP E
Sbjct:   111 ASAARLMLDNGFAAIYNMQGGINAWISGGLPLE 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1392 DET_1392 "rhodanese-like domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 38/93 (40%), Positives = 50/93 (53%)

Query:    91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
             LDVRTP E++ GH  GA+N+ Y Y           F   +S  F K    +V C++G RS
Sbjct:    62 LDVRTPSEYAQGHIPGAVNLDY-YA---------SFEASLSA-FDKTKTYLVYCRTGNRS 110

Query:   151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
               AA  +L+ GFA I ++ GG  AW   GLP E
Sbjct:   111 ASAARLMLDNGFAAIYNMQGGINAWISGGLPLE 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8ECN1 SO_3105 "Periplasmic rhodanese domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 36/106 (33%), Positives = 55/106 (51%)

Query:    78 RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
             +VA E + +G   LDVRTPEEF+AGH   A+N+P+  +V +   K             K 
Sbjct:    38 QVAWEKIASGAMVLDVRTPEEFAAGHLVNAVNIPFE-QVAAEFAKR---------GIAKD 87

Query:   138 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
               +++ C+SG+RS +A   L+ AG+   T   GG+    +    TE
Sbjct:    88 TPVVLYCRSGRRSGIATDALVAAGYTK-TYNGGGYQTLAETQPKTE 132

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38853	STR15_ARATH	No assigned EC number	0.5392	0.9402	0.9505	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.1	0.914
3rd Layer	2.8.1	0.921

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_570018 hypothetical protein (181 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
PLN02160	136	PLN02160, PLN02160, thiosulfate sulfurtransferase	2e-28
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	1e-21
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	4e-20
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	6e-19
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	1e-17
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	2e-17
cd01522	117	cd01522, RHOD_1, Member of the Rhodanese Homology	1e-12
cd01524	90	cd01524, RHOD_Pyr_redox, Member of the Rhodanese H	5e-11
cd01526	122	cd01526, RHOD_ThiF, Member of the Rhodanese Homolo	2e-09
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	2e-09
cd01527	99	cd01527, RHOD_YgaP, Member of the Rhodanese Homolo	3e-09
cd01519	106	cd01519, RHOD_HSP67B2, Member of the Rhodanese Hom	3e-09
PRK00162	108	PRK00162, glpE, thiosulfate sulfurtransferase; Val	4e-09
cd01528	101	cd01528, RHOD_2, Member of the Rhodanese Homology	5e-09
PRK10287	104	PRK10287, PRK10287, thiosulfate:cyanide sulfurtran	1e-07
cd01529	96	cd01529, 4RHOD_Repeats, Member of the Rhodanese Ho	1e-07
TIGR02981	101	TIGR02981, phageshock_pspE, phage shock operon rho	3e-07
cd01444	96	cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and	4e-07
cd01447	103	cd01447, Polysulfide_ST, Polysulfide-sulfurtransfe	1e-06
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	1e-06
COG2897	285	COG2897, SseA, Rhodanese-related sulfurtransferase	2e-06
cd01449	118	cd01449, TST_Repeat_2, Thiosulfate sulfurtransfera	7e-06
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	2e-05
PRK11784	345	PRK11784, PRK11784, tRNA 2-selenouridine synthase;	3e-05
cd01523	100	cd01523, RHOD_Lact_B, Member of the Rhodanese Homo	3e-05
TIGR03167	311	TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine s	6e-05
cd01520	128	cd01520, RHOD_YbbB, Member of the Rhodanese Homolo	2e-04
cd01534	95	cd01534, 4RHOD_Repeat_3, Member of the Rhodanese H	0.001

>gnl|CDD|177819 PLN02160, PLN02160, thiosulfate sulfurtransferase

 Score =  102 bits (256), Expect = 2e-28
 Identities = 51/111 (45%), Positives = 70/111 (63%), Gaps = 2/111 (1%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVS 131
           SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     G  KN +F+E+VS
Sbjct: 16  SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVS 75

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 182
           +     D+I+VGCQSG RS+ A T+L+ AG+  + +  GG+ AW  +  P 
Sbjct: 76  SLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPI 126

Length = 136

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 84.0 bits (208), Expect = 1e-21
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE--VSTRFRKHDEIIV 142
                 LDVR+PEE+  GH  GA+N+P    +      ++   EE        K   ++V
Sbjct: 2   DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVV 61

Query: 143 GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 181
            C+SG RS  AA  L   GF  +  + GG+  W   G P
Sbjct: 62  YCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 79.7 bits (197), Expect = 4e-20
 Identities = 36/98 (36%), Positives = 46/98 (46%), Gaps = 11/98 (11%)

Query: 80  AHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHD 138
             ELL       LDVR PEE++AGH  GAIN+P            L+          K  
Sbjct: 2   LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLS---------ELEE-RAALLELDKDK 51

Query: 139 EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 176
            I+V C+SG RS  AA  L  AG   + ++ GG  AW+
Sbjct: 52  PIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 77.2 bits (190), Expect = 6e-19
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           +DVR+PEE++ GH  GA+N+P        +   L   EE+  +  K   I+V C SG RS
Sbjct: 17  IDVRSPEEYAKGHIPGAVNIPLSLPSLDKLESEL---EELGKKLDKDKTIVVYCASGNRS 73

Query: 151 MMAATDLL-----NAGFAGITDIAGGFAAWRQ 177
             AA  LL       G+  +  + GGF AW+ 
Sbjct: 74  GQAAALLLALILKALGYKNVYVLDGGFEAWKA 105

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 73.8 bits (181), Expect = 1e-17
 Identities = 38/113 (33%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 73  TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVS 131
           T      A  L       LDVR PEE+  GH  G AIN+P        +++       + 
Sbjct: 6   TISEDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIP--------LSELKAAENLLE 57

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184
                 D I+V C SG RS  AA  L  AGF  + ++ GG  AW+  GLP   
Sbjct: 58  --LPDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR 108

Length = 110

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 14/107 (13%)

Query: 80  AHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHD 138
           A      G   +DVR   E ++G A GA+ +P              F+E  + T     D
Sbjct: 10  ARARAAQGAVLIDVREAHERASGQAEGALRIPR------------GFLELRIETHLPDRD 57

Query: 139 -EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184
            EI++ C SG RS  AA  L   G+  +  +AGGF+AW+  GLP E 
Sbjct: 58  REIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLER 104

Length = 376

>gnl|CDD|238780 cd01522, RHOD_1, Member of the Rhodanese Homology Domain superfamily, subgroup 1

 Score = 61.2 bits (149), Expect = 1e-12
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 11/108 (10%)

Query: 80  AHELLQAGHR--YLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK 136
           A  LLQA  +   +DVRT  E+   G    A++V +  +V   M  N  F+ E+  +  K
Sbjct: 6   AWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAW--QVYPDMEINPNFLAELEEKVGK 63

Query: 137 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF------AAWRQN 178
              +++ C+SG RS+ AA     AGF  + ++  GF      A  R  
Sbjct: 64  DRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAAGHRGG 111

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. Length = 117

>gnl|CDD|238782 cd01524, RHOD_Pyr_redox, Member of the Rhodanese Homology Domain superfamily

 Score = 56.1 bits (136), Expect = 5e-11
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 19/88 (21%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR---KHDEIIVGCQSG 147
           +DVRTP+EF  GH  GAIN+P               ++E+  R     K  EIIV C  G
Sbjct: 17  IDVRTPQEFEKGHIKGAINIP---------------LDELRDRLNELPKDKEIIVYCAVG 61

Query: 148 KRSMMAATDLLNAGFAGITDIAGGFAAW 175
            R  +AA  L   GF  + ++ GG+  +
Sbjct: 62  LRGYIAARILTQNGFK-VKNLDGGYKTY 88

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. Length = 90

>gnl|CDD|238784 cd01526, RHOD_ThiF, Member of the Rhodanese Homology Domain superfamily

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 36/108 (33%), Positives = 46/108 (42%), Gaps = 9/108 (8%)

Query: 82  ELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN--LKFVEEVSTRFRKH 137
            +LQAG  H  LDVR    F       AIN+P    +   ++K   LK ++E+     K 
Sbjct: 17  NILQAGKKHVLLDVRPKVHFEICRLPEAINIP----LSELLSKAAELKSLQELPLDNDKD 72

Query: 138 DEIIVGCQSGKRSMMAATDLLNAG-FAGITDIAGGFAAWRQNGLPTEP 184
             I V C+ G  S  A   L   G    + DI GG  AW     PT P
Sbjct: 73  SPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTFP 120

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. Length = 122

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 14/92 (15%)

Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE--VSTRFRKHDEIIVGC 144
           G   +DVR P EF+A    GA NVP            L  + E          DE++V C
Sbjct: 274 GVTLIDVREPSEFAAYSIPGAHNVP------------LSAIREGANPPSVSAGDEVVVYC 321

Query: 145 QSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 176
            +G RS  A   L  AG+ G++ + GG   W 
Sbjct: 322 AAGVRSAQAVAILERAGYTGMSSLDGGIEGWL 353

Length = 355

>gnl|CDD|238785 cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily

 Score = 51.7 bits (124), Expect = 3e-09
 Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 14/111 (12%)

Query: 73  TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 132
           T++    A ELL  G   +D+R P+E+      GA  VP            L  +E    
Sbjct: 2   TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVP------------LSQLESEGL 49

Query: 133 RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNGLPT 182
                + II  C+SG R+   A + L A  AG    + GG  AW+  GLP 
Sbjct: 50  PLVGANAIIFHCRSGMRTQQNA-ERLAAISAGEAYVLEGGLDAWKAAGLPV 99

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases. Length = 99

>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain superfamily

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 17/93 (18%)

Query: 92  DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH---------DEIIV 142
           DVR PEE   G   GAIN+P      S +   L   EE    F K           E+I 
Sbjct: 20  DVREPEELKTGKIPGAINIPL-----SSLPDALALSEE---EFEKKYGFPKPSKDKELIF 71

Query: 143 GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 175
            C++G RS  AA    + G+  + +  G +  W
Sbjct: 72  YCKAGVRSKAAAELARSLGYENVGNYPGSWLDW 104

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. Length = 106

>gnl|CDD|178908 PRK00162, glpE, thiosulfate sulfurtransferase; Validated

 Score = 51.6 bits (124), Expect = 4e-09
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 19/111 (17%)

Query: 75  VPVRVAHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           + V  AH+ L + G   +D+R P+ F+ GHA GA ++            N    + +   
Sbjct: 7   INVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHL-----------TN----DSLGAF 51

Query: 134 FRKHD---EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 181
            R+ D    ++V C  G  S  AA  LL  GF  +  I GGF AWR+    
Sbjct: 52  MRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPA 102

Length = 108

>gnl|CDD|238786 cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           +DVR PEE       G +++P        M++  +  +E+        +I+V C  G RS
Sbjct: 21  IDVREPEELEIAFLPGFLHLP--------MSEIPERSKEL-DSDNPDKDIVVLCHHGGRS 71

Query: 151 MMAATDLLNAGFAGITDIAGGFAAWRQ 177
           M  A  LL  GF  + ++ GG  AW  
Sbjct: 72  MQVAQWLLRQGFENVYNLQGGIDAWSL 98

Subgroup 2 includes uncharacterized putative rhodanese-related domains. Length = 101

>gnl|CDD|182356 PRK10287, PRK10287, thiosulfate:cyanide sulfurtransferase; Provisional

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 25/115 (21%)

Query: 62  LRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT 121
            +  L A+ +  S+P       + A   ++DVR PE++   H  GAIN+P          
Sbjct: 2   FKKGLLALALVFSLP-------VFAAEHWIDVRVPEQYQQEHVQGAINIPL--------- 45

Query: 122 KNLKFVEEVSTRFR-KHDEIIVGCQSGKRSMMAATDLLNAGF------AGITDIA 169
           K +K  E ++T    K+D + + C +G++S  A   L   G+       G+ DIA
Sbjct: 46  KEVK--ERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLKDIA 98

Length = 104

>gnl|CDD|238787 cd01529, 4RHOD_Repeats, Member of the Rhodanese Homology Domain superfamily

 Score = 47.3 bits (112), Expect = 1e-07
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS 146
           G   LDVR  +E++AGH  G  ++P    V              +TR       ++ C  
Sbjct: 12  GTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATR------YVLTCDG 65

Query: 147 GKRSMMAATDLLNAGFAGITDIAGGFAAWR 176
              +  AA +LL  G   +  + GG +AW 
Sbjct: 66  SLLARFAAQELLALGGKPVALLDGGTSAWV 95

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats. Length = 96

>gnl|CDD|132026 TIGR02981, phageshock_pspE, phage shock operon rhodanese PspE

 Score = 46.2 bits (109), Expect = 3e-07
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 26/97 (26%)

Query: 84  LQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-----KHD 138
           L A   ++DVR PE++   H  GAIN+P               ++E+          K+D
Sbjct: 15  LFAAEHWIDVRIPEQYQQEHIQGAINIP---------------LKEIKEHIATAVPDKND 59

Query: 139 EIIVGCQSGKRSMMAATDLLNAGF------AGITDIA 169
            + + C +G++S MA   LL+ G+       GI DIA
Sbjct: 60  TVKLYCNAGRQSGMAKDILLDMGYTHAENAGGIKDIA 96

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely. Length = 101

>gnl|CDD|238721 cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 16/101 (15%)

Query: 80  AHELLQAGHR--YLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
             ELL AG     LDVR P  ++A   H  GAI++            +   +++      
Sbjct: 7   LAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHL------------DEDSLDDWLGDLD 54

Query: 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 176
           +   ++V C  G  S   A  L  AGF  +  +AGGF AWR
Sbjct: 55  RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine. Length = 96

>gnl|CDD|238724 cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 15/110 (13%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVST-- 132
           P      L   G   +DVR P E    G   GA + P       GM   L+F  +  +  
Sbjct: 3   PEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAP------RGM---LEFWADPDSPY 53

Query: 133 ---RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 179
               F +    +  C SG RS +A   L + G   + +I GGF  W++ G
Sbjct: 54  HKPAFAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. Length = 103

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 13/112 (11%)

Query: 77  VRVAHELLQAGHR---YLDVRTPEEFSAGHATGAINVPYM-YRVGSGMTKNLKFVEEVST 132
           V     LL +G      +DVR P E+      G++ VP      G G+ K    V+E+  
Sbjct: 286 VTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGVEK----VKELL- 340

Query: 133 RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184
                  +I  C+ G RS  A   L  AG  G T++ GG  AW +   P+ P
Sbjct: 341 ---NGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPSVP 388

Length = 390

>gnl|CDD|225450 COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 24/113 (21%)

Query: 91  LDVRTPEEFS----------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH--- 137
           +D R+PE F           AGH  GAIN+P+   V  G     K  EE++  +      
Sbjct: 175 IDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLF--KSPEEIARLYADAGID 232

Query: 138 --DEIIVGCQSGKRSMMAATDLLNAGFAGITDI---AGGFAAWRQ-NGLPTEP 184
              E+IV C SG R   A+   L     G  +     G ++ W      P E 
Sbjct: 233 PDKEVIVYCGSGVR---ASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVET 282

Length = 285

>gnl|CDD|238726 cd01449, TST_Repeat_2, Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 28/108 (25%)

Query: 91  LDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMT--KNLKFVEEVSTRFRKH 137
           +D R+PE F            +GH  GA+N+P+     S +      K  EE+   F   
Sbjct: 18  VDARSPERFRGEVPEPRPGLRSGHIPGAVNIPW----TSLLDEDGTFKSPEELRALFAAL 73

Query: 138 -----DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAWRQ 177
                  +IV C SG     A   LL     G  ++    G ++ W  
Sbjct: 74  GITPDKPVIVYCGSGVT---ACVLLLALELLGYKNVRLYDGSWSEWGS 118

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue. Length = 118

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 14/131 (10%)

Query: 56  FCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYM 113
           FC   S      A G  +++  R   E L +G +   +DVR P E+   H  GA  +P  
Sbjct: 272 FCGVVSDEAQQAAAG--STITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIP-- 327

Query: 114 YRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 173
                   K+     E   +  +   I++ C++G RS  A   L  AGF+    + GG  
Sbjct: 328 --------KSEILSGEALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVV 379

Query: 174 AWRQNGLPTEP 184
           AW +   P+ P
Sbjct: 380 AWAKQVDPSLP 390

Length = 392

>gnl|CDD|236982 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 25/120 (20%)

Query: 82  ELLQAGHRYLDVRTPEEFSAGHATGAINVPYM-----------Y---------RVGSGMT 121
            L       +DVR+P EF+ GH  GAIN+P +           Y          +G  + 
Sbjct: 10  ALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALV 69

Query: 122 -KNLK-FVEEV-STRFRKHDEIIVGC-QSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 177
             N+    EE  +   R +   ++ C + G RS      L  AG   +  + GG+ A+R+
Sbjct: 70  AGNIAAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGID-VPRLEGGYKAYRR 128

Length = 345

>gnl|CDD|238781 cd01523, RHOD_Lact_B, Member of the Rhodanese Homology Domain superfamily

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 76  PVRVAHELLQAGHRY-LDVRTPEEFSAGHATGAINVPY---MYRVGSGMTKNLKFVEEVS 131
           P  +   LL     + LDVR   ++      G  N PY    +         L+  E++ 
Sbjct: 3   PEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDF-------LEIEEDIL 55

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 175
            +     E+ V C     S   A  L   G+  +  +AGG  AW
Sbjct: 56  DQLPDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAW 98

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain. Length = 100

>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 24/110 (21%)

Query: 91  LDVRTPEEFSAGHATGAINVPYM-----------Y-RVGSGMTKNL----------KFVE 128
           +DVR+P EF+ GH  GAIN+P +           Y +VG      L            VE
Sbjct: 6   IDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVE 65

Query: 129 EVSTRFRKHDEIIVGC-QSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 177
           +         + ++ C + G RS   A  L   GF  +  + GG+ A+R+
Sbjct: 66  QWRAFADGPPQPLLYCWRGGMRSGSLAWLLAQIGFR-VPRLEGGYKAYRR 114

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene [Protein synthesis, tRNA and rRNA base modification]. Length = 311

>gnl|CDD|238778 cd01520, RHOD_YbbB, Member of the Rhodanese Homology Domain superfamily

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 25/120 (20%)

Query: 82  ELLQAGHRYLDVRTPEEFSAGHATGAINVPYM-----YRVG----------------SGM 120
            L +A    +DVR+P+EF  GH  GAIN+P +       VG                  +
Sbjct: 8   ALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELV 67

Query: 121 TKNLK-FVEEVSTRFRKHD-EIIVGC-QSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 177
           +  LK  + E      + D ++++ C + G RS   A  L + G   +  + GG+ A+R+
Sbjct: 68  SGKLKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGID-VPLLEGGYKAYRK 126

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB. Length = 128

>gnl|CDD|238792 cd01534, 4RHOD_Repeat_3, Member of the Rhodanese Homology Domain superfamily, repeat 3

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 91  LDVRTPEEFSAGHATGAINVP 111
            DVRTPEE+ AGH  G  + P
Sbjct: 20  FDVRTPEEYEAGHLPGFRHTP 40

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue. Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.93
PLN02160	136	thiosulfate sulfurtransferase	99.93
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.92
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.92
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.91
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.9
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.89
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.89
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.89
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.89
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.88
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.88
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.88
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.88
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.88
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.88
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.88
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.88
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.87
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.87
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.87
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.86
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.86
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.86
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.86
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.85
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.85
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.85
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.85
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.85
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.85
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.84
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.83
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.83
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.83
PRK07411	390	hypothetical protein; Validated	99.82
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.82
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.82
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.82
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.82
PRK01415	247	hypothetical protein; Validated	99.82
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.81
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.81
PRK05320	257	rhodanese superfamily protein; Provisional	99.8
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.8
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.77
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.77
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.76
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.74
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.74
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.72
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.7
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.7
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.58
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.52
COG1054	308	Predicted sulfurtransferase [General function pred	99.36
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.33
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	99.31
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.28
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	98.59
COG2603	334	Predicted ATPase [General function prediction only	97.68
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	97.34
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	97.32
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.19
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	95.68
PF13350	164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	95.25
cd00127	139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	93.87
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	93.74
smart00195	138	DSPc Dual specificity phosphatase, catalytic domai	93.37
PLN02727	986	NAD kinase	93.31
KOG3636	669	consensus Uncharacterized conserved protein, conta	93.04
COG3453	130	Uncharacterized protein conserved in bacteria [Fun	92.87
KOG1717	343	consensus Dual specificity phosphatase [Defense me	91.9
PF05706	168	CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3)	89.09
PF00782	133	DSPc: Dual specificity phosphatase, catalytic doma	86.65
COG2453	180	CDC14 Predicted protein-tyrosine phosphatase [Sign	85.65
PRK12361	547	hypothetical protein; Provisional	85.56
PTZ00242	166	protein tyrosine phosphatase; Provisional	84.75

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.93  E-value=6.7e-26  Score=158.03  Aligned_cols=115  Identities=41%  Similarity=0.701  Sum_probs=105.0

Q ss_pred             CCCCcccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCC-CCeEEEEcCC
Q 029984           69 VGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK-HDEIIVGCQS  146 (184)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ivv~c~~  146 (184)
                      ...+.+++.++++++.+.+ +++||||+++||..||+|.++|||+......+.+.+++|.+......++ ++.|||+|.+
T Consensus        19 ~~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~S   98 (136)
T KOG1530|consen   19 ASNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCAS   98 (136)
T ss_pred             cCCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEecc
Confidence            4567789999999999887 9999999999999999999999999877778888999999998877765 5599999999


Q ss_pred             ChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          147 GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       147 g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      |.||..+...|..+||+||.+|.|||.+|.+.|+|..
T Consensus        99 G~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~  135 (136)
T KOG1530|consen   99 GVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK  135 (136)
T ss_pred             CcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence            9999999999999999999999999999999998764

>PLN02160 thiosulfate sulfurtransferase

Probab=99.93  E-value=1.8e-25  Score=161.66  Aligned_cols=113  Identities=45%  Similarity=0.819  Sum_probs=95.3

Q ss_pred             CcccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCc--EEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChh
Q 029984           72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  149 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~r  149 (184)
                      ...++++++.++++++..|||||++.||..||||||  +|+|+..+...+.+.+.+++......++++++||+||++|.|
T Consensus        14 ~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~R   93 (136)
T PLN02160         14 VVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGAR   93 (136)
T ss_pred             eeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcHH
Confidence            446788899988887788999999999999999999  899975443334444555555555546788999999999999


Q ss_pred             HHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          150 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       150 s~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      |..++..|...||++|++|.|||.+|.++|+|+++
T Consensus        94 S~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  128 (136)
T PLN02160         94 SLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQ  128 (136)
T ss_pred             HHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccc
Confidence            99999999999999999999999999999999864

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.92  E-value=1.6e-24  Score=148.34  Aligned_cols=98  Identities=31%  Similarity=0.488  Sum_probs=85.6

Q ss_pred             cccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHH
Q 029984           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (184)
Q Consensus        73 ~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~  152 (184)
                      ..++++++.++++++.+|||+|+++||..+|||||+|+|+.            .+......++++++||+||++|.++..
T Consensus         2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~iv~~c~~g~~s~~   69 (99)
T cd01527           2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLS------------QLESEGLPLVGANAIIFHCRSGMRTQQ   69 (99)
T ss_pred             CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChh------------HhcccccCCCCCCcEEEEeCCCchHHH
Confidence            35788899888887789999999999999999999999984            222222346888999999999999999


Q ss_pred             HHHHHHHccCCCeeeccccHHHHHhCCCCC
Q 029984          153 AATDLLNAGFAGITDIAGGFAAWRQNGLPT  182 (184)
Q Consensus       153 ~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~  182 (184)
                      ++..|.+.||+++++|+||+.+|+..|+|+
T Consensus        70 ~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~   99 (99)
T cd01527          70 NAERLAAISAGEAYVLEGGLDAWKAAGLPV   99 (99)
T ss_pred             HHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence            999999999999999999999999999885

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.92  E-value=3.6e-24  Score=149.20  Aligned_cols=98  Identities=23%  Similarity=0.371  Sum_probs=83.3

Q ss_pred             CCCcccCHHHHHHHHhCC--CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcC
Q 029984           70 GVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQ  145 (184)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~--~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~  145 (184)
                      .....++++++.++++++  .+|||||++.||..||||||+|+|+.            .+......+  +++++|||||.
T Consensus         7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~------------~l~~~~~~l~~~~~~~ivv~C~   74 (109)
T cd01533           7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGA------------ELVLRVGELAPDPRTPIVVNCA   74 (109)
T ss_pred             ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHH------------HHHHHHHhcCCCCCCeEEEECC
Confidence            344578889999888754  68999999999999999999999983            444444444  45789999999


Q ss_pred             CChhHHHHHHHHHHccCCC-eeeccccHHHHHhCC
Q 029984          146 SGKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNG  179 (184)
Q Consensus       146 ~g~rs~~~~~~L~~~G~~~-v~~l~GG~~~W~~~g  179 (184)
                      +|.||..+++.|...||+| +++|+||+.+|..+|
T Consensus        75 ~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g  109 (109)
T cd01533          75 GRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG  109 (109)
T ss_pred             CCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence            9999999999999999988 899999999999876

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.91  E-value=7.2e-24  Score=147.41  Aligned_cols=101  Identities=32%  Similarity=0.497  Sum_probs=89.1

Q ss_pred             CcccCHHHHHHHHhC-CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhH
Q 029984           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs  150 (184)
                      ...++++++.+.+++ +.++||+|++.||..||||||+|+|+            ..+......++++++++|||.+|.+|
T Consensus         4 ~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~------------~~l~~~~~~~~~~~~ivv~c~~g~~s   71 (108)
T PRK00162          4 FECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTN------------DSLGAFMRQADFDTPVMVMCYHGNSS   71 (108)
T ss_pred             ccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCH------------HHHHHHHHhcCCCCCEEEEeCCCCCH
Confidence            456788899888754 57899999999999999999999998            34555556678899999999999999


Q ss_pred             HHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       151 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      ..++..|+..||+|+++++||+.+|.+.++|++.
T Consensus        72 ~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~  105 (108)
T PRK00162         72 QGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA  105 (108)
T ss_pred             HHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence            9999999999999999999999999999999863

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=4.4e-24  Score=146.74  Aligned_cols=98  Identities=24%  Similarity=0.337  Sum_probs=78.5

Q ss_pred             ccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHH
Q 029984           74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (184)
Q Consensus        74 ~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~  152 (184)
                      .++++++.++++++ .+|||||++.||..||||||+|||+..+.     ...+.+... ..++++++|||||++|.||..
T Consensus         3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~-----~~~~~~~~~-~~~~~~~~ivvyC~~G~rs~~   76 (101)
T cd01518           3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFR-----EFPFWLDEN-LDLLKGKKVLMYCTGGIRCEK   76 (101)
T ss_pred             cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHh-----HhHHHHHhh-hhhcCCCEEEEECCCchhHHH
Confidence            46788888887654 78999999999999999999999984211     001112211 123788999999999999999


Q ss_pred             HHHHHHHccCCCeeeccccHHHHHh
Q 029984          153 AATDLLNAGFAGITDIAGGFAAWRQ  177 (184)
Q Consensus       153 ~~~~L~~~G~~~v~~l~GG~~~W~~  177 (184)
                      ++..|...||++|++|+||+.+|.+
T Consensus        77 a~~~L~~~G~~~v~~l~GG~~~W~~  101 (101)
T cd01518          77 ASAYLKERGFKNVYQLKGGILKYLE  101 (101)
T ss_pred             HHHHHHHhCCcceeeechhHHHHhC
Confidence            9999999999999999999999963

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.89  E-value=1.2e-22  Score=141.71  Aligned_cols=98  Identities=27%  Similarity=0.489  Sum_probs=83.9

Q ss_pred             CcccCHHHHHHHHhCC---CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHH-HHHhcCCCCCeEEEEcCCC
Q 029984           72 PTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHDEIIVGCQSG  147 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ivv~c~~g  147 (184)
                      ...++++++.+++..+   .+|||+|++.+|..||||||+|+|..            .+. +....++++++|||||++|
T Consensus         7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~~i~~~~~vvvyc~~g   74 (110)
T cd01521           7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHR------------EICENATAKLDKEKLFVVYCDGP   74 (110)
T ss_pred             eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHH------------HhhhHhhhcCCCCCeEEEEECCC
Confidence            3457888888888643   78999999999999999999999983            232 4456678899999999987


Q ss_pred             h--hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCC
Q 029984          148 K--RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT  182 (184)
Q Consensus       148 ~--rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~  182 (184)
                      .  ++..+++.|++.||+ +++|+||+.+|+.+|+|+
T Consensus        75 ~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~  110 (110)
T cd01521          75 GCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT  110 (110)
T ss_pred             CCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence            4  899999999999995 999999999999999985

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.89  E-value=1.2e-22  Score=136.71  Aligned_cols=88  Identities=34%  Similarity=0.600  Sum_probs=78.5

Q ss_pred             CHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHH
Q 029984           76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAAT  155 (184)
Q Consensus        76 ~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~  155 (184)
                      +++++.+++.++.++||+|++++|..||||||+|+|+            ..+......++++++||+||.+|.++..++.
T Consensus         2 ~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~------------~~~~~~~~~~~~~~~vvl~c~~g~~a~~~a~   69 (90)
T cd01524           2 QWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPL------------DELRDRLNELPKDKEIIVYCAVGLRGYIAAR   69 (90)
T ss_pred             CHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCH------------HHHHHHHHhcCCCCcEEEEcCCChhHHHHHH
Confidence            5678888887778999999999999999999999998            3445555567888999999999999999999


Q ss_pred             HHHHccCCCeeeccccHHHHH
Q 029984          156 DLLNAGFAGITDIAGGFAAWR  176 (184)
Q Consensus       156 ~L~~~G~~~v~~l~GG~~~W~  176 (184)
                      .|++.|+ ++++|+||+.+|+
T Consensus        70 ~L~~~G~-~v~~l~GG~~~w~   89 (90)
T cd01524          70 ILTQNGF-KVKNLDGGYKTYS   89 (90)
T ss_pred             HHHHCCC-CEEEecCCHHHhc
Confidence            9999999 8999999999996

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.89  E-value=8.7e-23  Score=139.97  Aligned_cols=97  Identities=26%  Similarity=0.400  Sum_probs=78.0

Q ss_pred             cCHHHHHHHHhCC--CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHH
Q 029984           75 VPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (184)
Q Consensus        75 i~~~~~~~~~~~~--~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~  152 (184)
                      ++++++.++++++  .+|||||+++||..||||||+|+|+...... +   ..........++++++|||||.+|.||..
T Consensus         1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~-~---~~~~~~~~~~~~~~~~ivv~C~~G~rs~~   76 (100)
T cd01523           1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFD-F---LEIEEDILDQLPDDQEVTVICAKEGSSQF   76 (100)
T ss_pred             CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHH-H---HHhhHHHHhhCCCCCeEEEEcCCCCcHHH
Confidence            4677888877653  7899999999999999999999998421100 0   00013345667889999999999999999


Q ss_pred             HHHHHHHccCCCeeeccccHHHHH
Q 029984          153 AATDLLNAGFAGITDIAGGFAAWR  176 (184)
Q Consensus       153 ~~~~L~~~G~~~v~~l~GG~~~W~  176 (184)
                      ++..|.+.||+ ++.|.||+.+|.
T Consensus        77 aa~~L~~~G~~-~~~l~GG~~~W~   99 (100)
T cd01523          77 VAELLAERGYD-VDYLAGGMKAWS   99 (100)
T ss_pred             HHHHHHHcCce-eEEeCCcHHhhc
Confidence            99999999998 999999999996

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.89  E-value=4.3e-22  Score=147.97  Aligned_cols=108  Identities=21%  Similarity=0.302  Sum_probs=82.5

Q ss_pred             CcccCHHHHHHHHhCC-CeEEEcCChh----hHhcC---------CCCCcEEeccccccCCCCCC--CHHHHHHHHhc--
Q 029984           72 PTSVPVRVAHELLQAG-HRYLDVRTPE----EFSAG---------HATGAINVPYMYRVGSGMTK--NLKFVEEVSTR--  133 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~~-~~liDvR~~~----e~~~g---------hIpgAi~ip~~~~~~~~~~~--~~~~~~~~~~~--  133 (184)
                      ...++++++.++++++ .+|||||+++    ||..|         |||||+|+|+...   +.+.  ....+...+..  
T Consensus        35 ~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~---~~l~~~~~~~~~~~l~~~~  111 (162)
T TIGR03865        35 ARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGY---GNLAPAWQAYFRRGLERAT  111 (162)
T ss_pred             ccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCC---CCCCCchhHHHHHHHHHhc
Confidence            3457889999888765 8899999876    45544         9999999996211   1111  11223333322  


Q ss_pred             -CCCCCeEEEEcCCCh-hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCC
Q 029984          134 -FRKHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT  182 (184)
Q Consensus       134 -l~~~~~ivv~c~~g~-rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~  182 (184)
                       .+++++||+||.+|. +|..+++.|+.+||++|++|+||+.+|+.+|+|+
T Consensus       112 ~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv  162 (162)
T TIGR03865       112 GGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL  162 (162)
T ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence             268899999999986 8999999999999999999999999999999986

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=2.4e-22  Score=142.73  Aligned_cols=108  Identities=30%  Similarity=0.401  Sum_probs=84.5

Q ss_pred             CCCcccCHHHHHHHHhC--CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHH---HHhcCCCCCeEEEEc
Q 029984           70 GVPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE---VSTRFRKHDEIIVGC  144 (184)
Q Consensus        70 ~~~~~i~~~~~~~~~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~---~~~~l~~~~~ivv~c  144 (184)
                      +....++++++.+++.+  +.+|||+|++.||..+|||||+|||+..+...     ...+..   ....++++++||+||
T Consensus         5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~-----~~~~~~~~~~~~~~~~~~~ivv~C   79 (122)
T cd01526           5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK-----AAELKSLQELPLDNDKDSPIYVVC   79 (122)
T ss_pred             CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh-----hhhhhhhhhcccccCCCCcEEEEC
Confidence            34557888999888865  47899999999999999999999998422110     000000   112347889999999


Q ss_pred             CCChhHHHHHHHHHHccC-CCeeeccccHHHHHhCCCCC
Q 029984          145 QSGKRSMMAATDLLNAGF-AGITDIAGGFAAWRQNGLPT  182 (184)
Q Consensus       145 ~~g~rs~~~~~~L~~~G~-~~v~~l~GG~~~W~~~g~p~  182 (184)
                      ++|.||..++..|.+.|| ++++.|+||+.+|..+..+.
T Consensus        80 ~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~  118 (122)
T cd01526          80 RRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT  118 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence            999999999999999999 78999999999999876543

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=2e-22  Score=144.31  Aligned_cols=102  Identities=28%  Similarity=0.485  Sum_probs=78.8

Q ss_pred             cCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCC----C------------------CCHHHHHHHH-
Q 029984           75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGM----T------------------KNLKFVEEVS-  131 (184)
Q Consensus        75 i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~----~------------------~~~~~~~~~~-  131 (184)
                      ++++++.++++++.+|||||++.||..||||||+|||+........    .                  ..++++.... 
T Consensus         1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd01520           1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWE   80 (128)
T ss_pred             CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4678888888877899999999999999999999999843211000    0                  0011122221 


Q ss_pred             hcCCCCCeEEEEcC-CChhHHHHHHHHHHccCCCeeeccccHHHHHh
Q 029984          132 TRFRKHDEIIVGCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ  177 (184)
Q Consensus       132 ~~l~~~~~ivv~c~-~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~  177 (184)
                      ..++++++|||||+ +|.||..+++.|+.+|| ++++|+||+.+|+.
T Consensus        81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~  126 (128)
T cd01520          81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK  126 (128)
T ss_pred             hccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence            35789999999997 68899999999999999 69999999999975

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.88  E-value=2.2e-22  Score=136.84  Aligned_cols=90  Identities=29%  Similarity=0.388  Sum_probs=73.5

Q ss_pred             cCHHHHHHHHhCC---CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC-CCCCeEEEEcCCChhH
Q 029984           75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEIIVGCQSGKRS  150 (184)
Q Consensus        75 i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ivv~c~~g~rs  150 (184)
                      ++++++.+++.++   +++||||++.||..||||||+|+|+.           +......... .++++||+||.+|.||
T Consensus         1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~-----------~l~~~~~~~~~~~~~~iv~~c~~G~rs   69 (95)
T cd01534           1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGG-----------QLVQETDHFAPVRGARIVLADDDGVRA   69 (95)
T ss_pred             CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHH-----------HHHHHHHHhcccCCCeEEEECCCCChH
Confidence            4667888877653   67999999999999999999999983           2222222222 2467899999999999


Q ss_pred             HHHHHHHHHccCCCeeeccccHHHHH
Q 029984          151 MMAATDLLNAGFAGITDIAGGFAAWR  176 (184)
Q Consensus       151 ~~~~~~L~~~G~~~v~~l~GG~~~W~  176 (184)
                      ..++..|...||+ +++|+||+.+|.
T Consensus        70 ~~aa~~L~~~G~~-v~~l~GG~~~W~   94 (95)
T cd01534          70 DMTASWLAQMGWE-VYVLEGGLAAAL   94 (95)
T ss_pred             HHHHHHHHHcCCE-EEEecCcHHHhc
Confidence            9999999999998 999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=1.6e-22  Score=139.77  Aligned_cols=101  Identities=26%  Similarity=0.403  Sum_probs=80.0

Q ss_pred             CHHHHHHHHh-C-CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhHH
Q 029984           76 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSM  151 (184)
Q Consensus        76 ~~~~~~~~~~-~-~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs~  151 (184)
                      +.+++.++++ + +.+|||+|++.||..||||||+|+|+..+... ....++.+...+..  ++++++||+||++|.+|.
T Consensus         2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~   80 (106)
T cd01519           2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDA-LALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSK   80 (106)
T ss_pred             cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhh-hCCCHHHHHHHhcccCCCCCCeEEEECCCcHHHH
Confidence            4567777776 4 48899999999999999999999998643222 12233344444432  357889999999999999


Q ss_pred             HHHHHHHHccCCCeeeccccHHHHHh
Q 029984          152 MAATDLLNAGFAGITDIAGGFAAWRQ  177 (184)
Q Consensus       152 ~~~~~L~~~G~~~v~~l~GG~~~W~~  177 (184)
                      .+++.|...||+||++|+||+.+|.+
T Consensus        81 ~~~~~l~~~G~~~v~~~~Gg~~~W~~  106 (106)
T cd01519          81 AAAELARSLGYENVGNYPGSWLDWAA  106 (106)
T ss_pred             HHHHHHHHcCCccceecCCcHHHHcC
Confidence            99999999999999999999999963

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.88  E-value=3.3e-22  Score=137.37  Aligned_cols=92  Identities=32%  Similarity=0.543  Sum_probs=77.6

Q ss_pred             cCHHHHHHHHhCC---CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC---CCCCeEEEEcCCCh
Q 029984           75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---RKHDEIIVGCQSGK  148 (184)
Q Consensus        75 i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l---~~~~~ivv~c~~g~  148 (184)
                      ++++++.+++..+   .++||+|+++||..+|||||+|+|+.            .+......+   ++++++|+||++|.
T Consensus         2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~------------~~~~~~~~~~~~~~~~~vv~~c~~g~   69 (101)
T cd01528           2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMS------------EIPERSKELDSDNPDKDIVVLCHHGG   69 (101)
T ss_pred             CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHH------------HHHHHHHHhcccCCCCeEEEEeCCCc
Confidence            5677888877654   78999999999999999999999983            222233333   35899999999999


Q ss_pred             hHHHHHHHHHHccCCCeeeccccHHHHHhC
Q 029984          149 RSMMAATDLLNAGFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       149 rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~  178 (184)
                      +|..++..|.+.||+++++|+||+.+|...
T Consensus        70 rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~   99 (101)
T cd01528          70 RSMQVAQWLLRQGFENVYNLQGGIDAWSLE   99 (101)
T ss_pred             hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence            999999999999999999999999999764

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=4.1e-22  Score=135.29  Aligned_cols=90  Identities=34%  Similarity=0.598  Sum_probs=80.0

Q ss_pred             cCHHHHHHHHhC--CCeEEEcCChhhHhc--CCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhH
Q 029984           75 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (184)
Q Consensus        75 i~~~~~~~~~~~--~~~liDvR~~~e~~~--ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs  150 (184)
                      ++++++.+++++  +.++||+|++.||..  ||||||+|+|+            ..+......++++++|||||.+|.+|
T Consensus         2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~------------~~~~~~~~~~~~~~~ivv~c~~g~~s   69 (96)
T cd01444           2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDE------------DSLDDWLGDLDRDRPVVVYCYHGNSS   69 (96)
T ss_pred             cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCH------------HHHHHHHhhcCCCCCEEEEeCCCChH
Confidence            567788887765  388999999999999  99999999998            34555566688999999999999999


Q ss_pred             HHHHHHHHHccCCCeeeccccHHHHH
Q 029984          151 MMAATDLLNAGFAGITDIAGGFAAWR  176 (184)
Q Consensus       151 ~~~~~~L~~~G~~~v~~l~GG~~~W~  176 (184)
                      ..+++.|+..||++|++|+||+.+|.
T Consensus        70 ~~a~~~l~~~G~~~v~~l~gG~~~w~   95 (96)
T cd01444          70 AQLAQALREAGFTDVRSLAGGFEAWR   95 (96)
T ss_pred             HHHHHHHHHcCCceEEEcCCCHHHhc
Confidence            99999999999999999999999996

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.88  E-value=3.8e-22  Score=137.10  Aligned_cols=101  Identities=28%  Similarity=0.444  Sum_probs=77.5

Q ss_pred             cCHHHHHHHHhC-CCeEEEcCChhhH-hcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHH
Q 029984           75 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (184)
Q Consensus        75 i~~~~~~~~~~~-~~~liDvR~~~e~-~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~  152 (184)
                      ++++++.+++++ +.+|||+|++.+| ..||||||+|+|+..+..  .......  .....++++++|||||.+|.++..
T Consensus         1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~--~~~~~~~--~~~~~~~~~~~ivv~c~~g~~s~~   76 (103)
T cd01447           1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEF--WADPDSP--YHKPAFAEDKPFVFYCASGWRSAL   76 (103)
T ss_pred             CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhh--hcCcccc--ccccCCCCCCeEEEEcCCCCcHHH
Confidence            466788887764 5789999999998 579999999999742110  0000000  001136789999999999999999


Q ss_pred             HHHHHHHccCCCeeeccccHHHHHhCC
Q 029984          153 AATDLLNAGFAGITDIAGGFAAWRQNG  179 (184)
Q Consensus       153 ~~~~L~~~G~~~v~~l~GG~~~W~~~g  179 (184)
                      +++.|...||++|++|+||+.+|..+|
T Consensus        77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~g  103 (103)
T cd01447          77 AGKTLQDMGLKPVYNIEGGFKDWKEAG  103 (103)
T ss_pred             HHHHHHHcChHHhEeecCcHHHHhhcC
Confidence            999999999999999999999998765

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.88  E-value=8.4e-22  Score=139.68  Aligned_cols=105  Identities=24%  Similarity=0.285  Sum_probs=88.1

Q ss_pred             cCHHHHHHHHhC-CCeEEEcCCh-------hhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHHhc--CCCCCe
Q 029984           75 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDE  139 (184)
Q Consensus        75 i~~~~~~~~~~~-~~~liDvR~~-------~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--l~~~~~  139 (184)
                      ++++++.+++.+ +.+|||+|++       .+|..||||||+|+|+..+..     .+++.+.+.+...+..  ++++++
T Consensus         2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (122)
T cd01448           2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT   81 (122)
T ss_pred             cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence            567888888766 5789999999       999999999999999865432     3456666666666553  678999


Q ss_pred             EEEEcCC-ChhHHHHHHHHHHccCCCeeeccccHHHHHhCC
Q 029984          140 IIVGCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG  179 (184)
Q Consensus       140 ivv~c~~-g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g  179 (184)
                      |||||++ |.++..+++.|+..||++|++|+||+.+|.++|
T Consensus        82 vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g  122 (122)
T cd01448          82 VVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG  122 (122)
T ss_pred             EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence            9999998 589999999999999999999999999999875

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.87  E-value=6.4e-22  Score=144.55  Aligned_cols=91  Identities=25%  Similarity=0.381  Sum_probs=80.8

Q ss_pred             HHHHhCC--CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHH
Q 029984           81 HELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL  158 (184)
Q Consensus        81 ~~~~~~~--~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~  158 (184)
                      .+++.++  ++|||||++.+|..||||||+|+|.            ..+......++++++|||||.+|.+|..+++.|+
T Consensus         3 ~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~------------~~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~   70 (145)
T cd01535           3 AAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLR------------AQLAQALEKLPAAERYVLTCGSSLLARFAAADLA   70 (145)
T ss_pred             HHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCH------------HHHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHH
Confidence            3445443  6899999999999999999999997            5666666677888999999999999999999999


Q ss_pred             HccCCCeeeccccHHHHHhCCCCCC
Q 029984          159 NAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       159 ~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      ..|+++|++|+||+.+|+.+|+|++
T Consensus        71 ~~G~~~v~~L~GG~~aW~~~g~pl~   95 (145)
T cd01535          71 ALTVKPVFVLEGGTAAWIAAGLPVE   95 (145)
T ss_pred             HcCCcCeEEecCcHHHHHHCCCCcc
Confidence            9999999999999999999999986

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.87  E-value=1.3e-21  Score=157.57  Aligned_cols=141  Identities=21%  Similarity=0.346  Sum_probs=105.3

Q ss_pred             ceeeecCCCccccccccc-cCccc-c-------cC-CCCcccCHHHHHHHHhC-CCeEEEcCChhhHh-----------c
Q 029984           44 DNIGFISSKILSFCPKAS-LRGNL-E-------AV-GVPTSVPVRVAHELLQA-GHRYLDVRTPEEFS-----------A  101 (184)
Q Consensus        44 ~~~~~l~~~~~~~~~~~~-~~~~~-~-------~~-~~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~-----------~  101 (184)
                      ..+.+++|++..|..... ..... .       .. ......+.+++...+++ +.+|||+|++.||.           .
T Consensus       114 ~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~  193 (281)
T PRK11493        114 EKVSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRR  193 (281)
T ss_pred             CcEEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCccc
Confidence            345689999999975211 11100 0       00 01122344555544444 47899999999995           6


Q ss_pred             CCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHh-C
Q 029984          102 GHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-N  178 (184)
Q Consensus       102 ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~-~  178 (184)
                      ||||||+|+|+..+...+.+..++.++..+..  ++++++||+||++|.+|..++..|+.+||+|+++|+|||.+|.. .
T Consensus       194 GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~  273 (281)
T PRK11493        194 GHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARA  273 (281)
T ss_pred             ccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCC
Confidence            99999999998766555566777788777654  67889999999999999999999999999999999999999998 6


Q ss_pred             CCCCCC
Q 029984          179 GLPTEP  184 (184)
Q Consensus       179 g~p~~~  184 (184)
                      ++|+++
T Consensus       274 ~~P~~~  279 (281)
T PRK11493        274 DLPVEP  279 (281)
T ss_pred             CCCcCC
Confidence            999874

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=8e-22  Score=136.15  Aligned_cols=100  Identities=25%  Similarity=0.389  Sum_probs=75.9

Q ss_pred             cCHHHHHHHHhC---CCeEEEcCChhhHhcCCCCCcEEeccccccCC-CCCCCHHHHHHHHhcCCCCCeEEEEcCCChhH
Q 029984           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (184)
Q Consensus        75 i~~~~~~~~~~~---~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs  150 (184)
                      ++++++++++.+   +++|||||++.||..||||||+|+|+...... .....-.....+..  .++++||+||.+|.+|
T Consensus         1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~c~~g~~s   78 (105)
T cd01525           1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN--YKGKIIVIVSHSHKHA   78 (105)
T ss_pred             CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHh--hcCCeEEEEeCCCccH
Confidence            467888888875   37899999999999999999999998533211 01000000111111  2478999999999999


Q ss_pred             HHHHHHHHHccCCCeeeccccHHHHH
Q 029984          151 MMAATDLLNAGFAGITDIAGGFAAWR  176 (184)
Q Consensus       151 ~~~~~~L~~~G~~~v~~l~GG~~~W~  176 (184)
                      ..+++.|...||++|++|+||+.+|+
T Consensus        79 ~~~a~~L~~~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          79 ALFAAFLVKCGVPRVCILDGGINALK  104 (105)
T ss_pred             HHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence            99999999999999999999999995

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.86  E-value=1.7e-21  Score=137.27  Aligned_cols=103  Identities=24%  Similarity=0.451  Sum_probs=85.0

Q ss_pred             cCHHHHHHHHhCC-CeEEEcCChhhHhc-----------CCCCCcEEeccccccCC-CCCCCHHHHHHHHhc--CCCCCe
Q 029984           75 VPVRVAHELLQAG-HRYLDVRTPEEFSA-----------GHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDE  139 (184)
Q Consensus        75 i~~~~~~~~~~~~-~~liDvR~~~e~~~-----------ghIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~~--l~~~~~  139 (184)
                      ++++++.++++++ .+|||+|++.||..           ||||||+|+|+..+... +.+..++.+...+..  ++++++
T Consensus         1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (118)
T cd01449           1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP   80 (118)
T ss_pred             CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence            3567788777654 89999999999987           99999999998654322 344566677766654  468899


Q ss_pred             EEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHh
Q 029984          140 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ  177 (184)
Q Consensus       140 ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~  177 (184)
                      ||+||++|.+|..+++.|..+||+++++|+||+.+|.+
T Consensus        81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~  118 (118)
T cd01449          81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS  118 (118)
T ss_pred             EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence            99999999999999999999999999999999999963

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=2.3e-21  Score=137.57  Aligned_cols=92  Identities=28%  Similarity=0.402  Sum_probs=77.0

Q ss_pred             ccCHHHHHHHHhC-------CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHh------cCCCCCeE
Q 029984           74 SVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST------RFRKHDEI  140 (184)
Q Consensus        74 ~i~~~~~~~~~~~-------~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~------~l~~~~~i  140 (184)
                      .++++++.+++++       +++|||||++.||..||||||+|||..           +.+.....      .++++++|
T Consensus         3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~-----------~~l~~~~~~~~~~~~~~~~~~v   71 (121)
T cd01530           3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTK-----------DELEEFFLDKPGVASKKKRRVL   71 (121)
T ss_pred             ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcH-----------HHHHHHHHHhhcccccCCCCEE
Confidence            4788888888764       478999999999999999999999983           22333222      26789999


Q ss_pred             EEEcC-CChhHHHHHHHHHHc------------cCCCeeeccccHHHHH
Q 029984          141 IVGCQ-SGKRSMMAATDLLNA------------GFAGITDIAGGFAAWR  176 (184)
Q Consensus       141 vv~c~-~g~rs~~~~~~L~~~------------G~~~v~~l~GG~~~W~  176 (184)
                      |+||. +|.||..+++.|++.            ||.+|++|+||+.+|-
T Consensus        72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence            99997 999999999999985            9999999999999983

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.86  E-value=3.2e-21  Score=130.56  Aligned_cols=96  Identities=33%  Similarity=0.557  Sum_probs=75.6

Q ss_pred             CCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHH--HhcCCCCCeEEEEcCCChhHHHHHHHHHHccCC
Q 029984           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV--STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFA  163 (184)
Q Consensus        86 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~  163 (184)
                      ++.+|||+|++.||..+|||||+|+|...............+...  ...++++++||+||.+|.++..+++.|.+.||+
T Consensus         3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~   82 (100)
T smart00450        3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK   82 (100)
T ss_pred             CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence            457899999999999999999999998643322111111111221  233578899999999999999999999999999


Q ss_pred             CeeeccccHHHHHhCCCC
Q 029984          164 GITDIAGGFAAWRQNGLP  181 (184)
Q Consensus       164 ~v~~l~GG~~~W~~~g~p  181 (184)
                      +|++|+||+.+|...|.|
T Consensus        83 ~v~~l~GG~~~w~~~~~~  100 (100)
T smart00450       83 NVYLLDGGYKEWSAAGPP  100 (100)
T ss_pred             ceEEecCCHHHHHhcCCC
Confidence            999999999999998865

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.86  E-value=2e-21  Score=137.12  Aligned_cols=102  Identities=28%  Similarity=0.428  Sum_probs=82.5

Q ss_pred             cCHHHHHHHHhC--CCeEEEcCChhhHh-cCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHH
Q 029984           75 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (184)
Q Consensus        75 i~~~~~~~~~~~--~~~liDvR~~~e~~-~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~  151 (184)
                      ++++++.+++++  +.++||||++.||+ .||||||+|+|+..+...  .....+...+...++++++||+||++|.+|.
T Consensus         1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~   78 (117)
T cd01522           1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNRSI   78 (117)
T ss_pred             CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence            467888888876  48899999999999 999999999998543211  1113344444444578899999999999999


Q ss_pred             HHHHHHHHccCCCeeeccccHHHHHhC
Q 029984          152 MAATDLLNAGFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       152 ~~~~~L~~~G~~~v~~l~GG~~~W~~~  178 (184)
                      .++..|.+.||++++.|.||+.+|+..
T Consensus        79 ~aa~~L~~~G~~~v~~l~gG~~~~~~~  105 (117)
T cd01522          79 AAAEAAAQAGFTNVYNVLEGFEGDLDA  105 (117)
T ss_pred             HHHHHHHHCCCCeEEECcCceecCCCC
Confidence            999999999999999999999999663

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.85  E-value=3.5e-21  Score=131.04  Aligned_cols=86  Identities=24%  Similarity=0.399  Sum_probs=70.7

Q ss_pred             CCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCe
Q 029984           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGI  165 (184)
Q Consensus        86 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v  165 (184)
                      ++.+|||||++.||..+|||||+|+|+..+     ....+.++. +..++++++||+||++|.++..++..|+..||++|
T Consensus        11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~-----~~~~~~~~~-~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v   84 (96)
T cd01529          11 PGTALLDVRAEDEYAAGHLPGKRSIPGAAL-----VLRSQELQA-LEAPGRATRYVLTCDGSLLARFAAQELLALGGKPV   84 (96)
T ss_pred             CCeEEEeCCCHHHHcCCCCCCcEeCCHHHh-----cCCHHHHHH-hhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCCE
Confidence            458899999999999999999999997422     112233332 33457889999999999999999999999999999


Q ss_pred             eeccccHHHHHh
Q 029984          166 TDIAGGFAAWRQ  177 (184)
Q Consensus       166 ~~l~GG~~~W~~  177 (184)
                      ++|+||+.+|..
T Consensus        85 ~~l~GG~~~W~~   96 (96)
T cd01529          85 ALLDGGTSAWVA   96 (96)
T ss_pred             EEeCCCHHHhcC
Confidence            999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.85  E-value=7.8e-21  Score=151.68  Aligned_cols=141  Identities=23%  Similarity=0.406  Sum_probs=110.4

Q ss_pred             ceeeecCCCcccccccc-ccCccc---cc------CCCCcccCHHHHHHHHhCC-CeEEEcCChhhHhc----------C
Q 029984           44 DNIGFISSKILSFCPKA-SLRGNL---EA------VGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSA----------G  102 (184)
Q Consensus        44 ~~~~~l~~~~~~~~~~~-~~~~~~---~~------~~~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~----------g  102 (184)
                      ..+.+|+|++..|.... ..+...   ..      .......+.++++...+.. .+|||+|++++|..          |
T Consensus       117 ~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~G  196 (285)
T COG2897         117 ENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAG  196 (285)
T ss_pred             CceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCC
Confidence            56889999999998732 222111   00      1122345666677666654 77899999999997          9


Q ss_pred             CCCCcEEeccccccCC-CCCCCHHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhC-
Q 029984          103 HATGAINVPYMYRVGS-GMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-  178 (184)
Q Consensus       103 hIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~-  178 (184)
                      |||||+|+|+..+... +.+..++.++.+.+  .++++++||+||++|.+|+..+..|+.+|+.+.++|+|+|.+|.+. 
T Consensus       197 HIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~  276 (285)
T COG2897         197 HIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDP  276 (285)
T ss_pred             CCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCC
Confidence            9999999999776654 56777888888774  4889999999999999999999999999998889999999999886 


Q ss_pred             CCCCCC
Q 029984          179 GLPTEP  184 (184)
Q Consensus       179 g~p~~~  184 (184)
                      +.|+++
T Consensus       277 ~~PV~~  282 (285)
T COG2897         277 DRPVET  282 (285)
T ss_pred             CCcccc
Confidence            568764

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.85  E-value=7.4e-21  Score=155.65  Aligned_cols=110  Identities=16%  Similarity=0.300  Sum_probs=92.9

Q ss_pred             cCHHHHHHHHhC-CCeEEEcCChhhH-----------hcCCCCCcEEecccccc-CCCCCCCHHHHHHHHhc--CCCCCe
Q 029984           75 VPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDE  139 (184)
Q Consensus        75 i~~~~~~~~~~~-~~~liDvR~~~e~-----------~~ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~--l~~~~~  139 (184)
                      ++.+++.+.+++ +.+|||+|++.||           ..||||||+|+|+..+. ..+.+.+.+.++..+..  ++++++
T Consensus       192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~  271 (320)
T PLN02723        192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP  271 (320)
T ss_pred             ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence            567778777654 4789999999998           46999999999986543 34567788888887764  678999


Q ss_pred             EEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhC-CCCCCC
Q 029984          140 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-GLPTEP  184 (184)
Q Consensus       140 ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~-g~p~~~  184 (184)
                      ||+||++|.+|..+++.|+.+||++|++|+|||.+|... ++|+++
T Consensus       272 iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~  317 (320)
T PLN02723        272 IVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVAT  317 (320)
T ss_pred             EEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccC
Confidence            999999999999999999999999999999999999886 678764

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.85  E-value=7.8e-21  Score=132.05  Aligned_cols=103  Identities=31%  Similarity=0.540  Sum_probs=79.4

Q ss_pred             CHHHHHHHH-hCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHH----HHHHHhcCCCCCeEEEEcCCChhH
Q 029984           76 PVRVAHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF----VEEVSTRFRKHDEIIVGCQSGKRS  150 (184)
Q Consensus        76 ~~~~~~~~~-~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~----~~~~~~~l~~~~~ivv~c~~g~rs  150 (184)
                      |++++++++ +++.+|||+|++.+|..||||||+|+|+............+.    .......++++++||+||..|.++
T Consensus         1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~   80 (113)
T PF00581_consen    1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS   80 (113)
T ss_dssp             -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred             CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence            467888888 345899999999999999999999999954422222222222    333344568888999999988888


Q ss_pred             HHHHHH-----HHHccCCCeeeccccHHHHHhC
Q 029984          151 MMAATD-----LLNAGFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       151 ~~~~~~-----L~~~G~~~v~~l~GG~~~W~~~  178 (184)
                      ..++..     |...||++|++|+|||.+|.++
T Consensus        81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~  113 (113)
T PF00581_consen   81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKAE  113 (113)
T ss_dssp             HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred             chhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence            777666     8889999999999999999863

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.85  E-value=8.6e-21  Score=158.43  Aligned_cols=100  Identities=34%  Similarity=0.583  Sum_probs=87.6

Q ss_pred             cccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhH
Q 029984           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRS  150 (184)
Q Consensus        73 ~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs  150 (184)
                      ..++++++.++++++.++||||+++||..||||||+|+|+.            .+......  .+++++||+||++|.+|
T Consensus         3 ~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~------------~l~~~~~~~~~~~~~~IvvyC~~G~rs   70 (376)
T PRK08762          3 REISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRG------------FLELRIETHLPDRDREIVLICASGTRS   70 (376)
T ss_pred             ceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHH------------HHHHHHhhhcCCCCCeEEEEcCCCcHH
Confidence            45788899998888889999999999999999999999983            34433333  26789999999999999


Q ss_pred             HHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       151 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      ..+++.|+..||++|++|+||+.+|.++|+|+++
T Consensus        71 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  104 (376)
T PRK08762         71 AHAAATLRELGYTRVASVAGGFSAWKDAGLPLER  104 (376)
T ss_pred             HHHHHHHHHcCCCceEeecCcHHHHHhcCCcccc
Confidence            9999999999999999999999999999999863

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.85  E-value=1.3e-20  Score=157.92  Aligned_cols=135  Identities=25%  Similarity=0.410  Sum_probs=105.1

Q ss_pred             CCccccCCCccceeeecCCCccccccccccCcccccCCCCcccCHHHHHHHHhCC--CeEEEcCChhhHhcCCCCCcEEe
Q 029984           33 LLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINV  110 (184)
Q Consensus        33 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~liDvR~~~e~~~ghIpgAi~i  110 (184)
                      ..+++++|.|..+..+.  +|..+|...+....  .......++++++.++++++  .++||+|+++||..+|||||+|+
T Consensus       251 ~~~~~~~~~C~~~~~~~--~~~~~c~~~~~~~~--~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAini  326 (392)
T PRK07878        251 TIKIRKDPSTPKITELI--DYEAFCGVVSDEAQ--QAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLI  326 (392)
T ss_pred             eEeeccCCCCCcccccc--cchhhccccccccc--ccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEc
Confidence            36788899987665555  57777753221111  12345678999999988754  68999999999999999999999


Q ss_pred             ccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCC
Q 029984          111 PYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP  181 (184)
Q Consensus       111 p~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p  181 (184)
                      |+..+.          .......++++++||+||++|.+|..+++.|++.||++|++|+||+.+|.+++.+
T Consensus       327 p~~~l~----------~~~~~~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~  387 (392)
T PRK07878        327 PKSEIL----------SGEALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP  387 (392)
T ss_pred             ChHHhc----------chhHHhhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence            984211          0123456788999999999999999999999999999999999999999988654

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.84  E-value=7.9e-21  Score=128.47  Aligned_cols=80  Identities=26%  Similarity=0.459  Sum_probs=66.9

Q ss_pred             CCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHH-HHHhcCC-CCCeEEEEcCCChh--HHHHHHHHHHcc
Q 029984           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFR-KHDEIIVGCQSGKR--SMMAATDLLNAG  161 (184)
Q Consensus        86 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~-~~~~~l~-~~~~ivv~c~~g~r--s~~~~~~L~~~G  161 (184)
                      ++++|||+|+++||..+|||||+|+|+.            .+. .....++ ++++|||||.+|.+  |..+++.|++.|
T Consensus         9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G   76 (92)
T cd01532           9 EEIALIDVREEDPFAQSHPLWAANLPLS------------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELG   76 (92)
T ss_pred             CCeEEEECCCHHHHhhCCcccCeeCCHH------------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence            4588999999999999999999999983            222 2222343 58899999999876  689999999999


Q ss_pred             CCCeeeccccHHHHHh
Q 029984          162 FAGITDIAGGFAAWRQ  177 (184)
Q Consensus       162 ~~~v~~l~GG~~~W~~  177 (184)
                      |++|++|+||+.+|.+
T Consensus        77 ~~~v~~l~GG~~~W~~   92 (92)
T cd01532          77 YTDVALLEGGLQGWRA   92 (92)
T ss_pred             ccCEEEccCCHHHHcC
Confidence            9999999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.83  E-value=2.7e-20  Score=129.10  Aligned_cols=87  Identities=40%  Similarity=0.685  Sum_probs=75.7

Q ss_pred             CCCeEEEcCChhhHhcCCCCC-cEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhHHHHHHHHHHccC
Q 029984           86 AGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGF  162 (184)
Q Consensus        86 ~~~~liDvR~~~e~~~ghIpg-Ai~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs~~~~~~L~~~G~  162 (184)
                      ++.++||||++.||..+|||| ++|+|..            .+......  +++++++||||.+|.||..++..|+++||
T Consensus        19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~------------~~~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G~   86 (110)
T COG0607          19 EDAVLLDVREPEEYERGHIPGAAINIPLS------------ELKAAENLLELPDDDPIVVYCASGVRSAAAAAALKLAGF   86 (110)
T ss_pred             CCCEEEeccChhHhhhcCCCcceeeeecc------------cchhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcCC
Confidence            458999999999999999999 9999984            22222222  57899999999999999999999999999


Q ss_pred             CCeeeccccHHHHHhCCCCCCC
Q 029984          163 AGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       163 ~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      ++++.+.||+.+|..+++|+++
T Consensus        87 ~~~~~l~gG~~~w~~~~~~~~~  108 (110)
T COG0607          87 TNVYNLDGGIDAWKGAGLPLVR  108 (110)
T ss_pred             ccccccCCcHHHHHhcCCCccc
Confidence            9888899999999999998763

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.83  E-value=6.3e-20  Score=132.98  Aligned_cols=102  Identities=20%  Similarity=0.257  Sum_probs=82.6

Q ss_pred             cCHHHHHHHHh-----CCCeEEEcCCh--------hhHhc------------CCCCCcEEeccccccC-C----CCCCCH
Q 029984           75 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMYRVG-S----GMTKNL  124 (184)
Q Consensus        75 i~~~~~~~~~~-----~~~~liDvR~~--------~e~~~------------ghIpgAi~ip~~~~~~-~----~~~~~~  124 (184)
                      ++.+++.+.++     ++.+|||+|..        ++|..            ||||||+|+|+..+.. .    ..+.+.
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~   80 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE   80 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence            46678887776     34889999987        89988            9999999999864321 1    234455


Q ss_pred             HHHHHHHhc--CCCCCeEEEEcCC---ChhHHHHHHHHHHccCCCeeeccccHHHHH
Q 029984          125 KFVEEVSTR--FRKHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDIAGGFAAWR  176 (184)
Q Consensus       125 ~~~~~~~~~--l~~~~~ivv~c~~---g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~  176 (184)
                      +.++..+..  ++++++||+||++   |..+.++++.|+.+|+++|++|+||+.+|+
T Consensus        81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~  137 (138)
T cd01445          81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF  137 (138)
T ss_pred             HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence            677777654  6788999999986   778999999999999999999999999996

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.83  E-value=7.5e-20  Score=147.29  Aligned_cols=112  Identities=20%  Similarity=0.210  Sum_probs=91.7

Q ss_pred             cccCHHHHHHHHhCC-CeEEEcCC----------hhhHhcCCCCCcEEeccccccCC-----CCCCCHHHHHHHHhc--C
Q 029984           73 TSVPVRVAHELLQAG-HRYLDVRT----------PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--F  134 (184)
Q Consensus        73 ~~i~~~~~~~~~~~~-~~liDvR~----------~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~--l  134 (184)
                      ..++++++.+.++++ ++|||+|+          +.+|..||||||+|+|+..+...     ..+..++.++..+..  +
T Consensus         5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi   84 (281)
T PRK11493          5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV   84 (281)
T ss_pred             cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            457888998888754 88999996          78999999999999997543221     234456777777766  4


Q ss_pred             CCCCeEEEEcCCChh-HHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          135 RKHDEIIVGCQSGKR-SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       135 ~~~~~ivv~c~~g~r-s~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      +++++|||||.++.+ +.++++.|...||++|++|+||+.+|.++|+|+++
T Consensus        85 ~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~  135 (281)
T PRK11493         85 NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEE  135 (281)
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccC
Confidence            789999999998764 66888999999999999999999999999999863

>PRK07411 hypothetical protein; Validated

Probab=99.82  E-value=8.9e-20  Score=152.76  Aligned_cols=140  Identities=26%  Similarity=0.372  Sum_probs=102.8

Q ss_pred             CCccccCCCccceeeecCCCccccccccccCccc-ccCCCCcccCHHHHHHHHhCC---CeEEEcCChhhHhcCCCCCcE
Q 029984           33 LLSLTVDQQRCDNIGFISSKILSFCPKASLRGNL-EAVGVPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAI  108 (184)
Q Consensus        33 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgAi  108 (184)
                      .+++.++|.|..+..+.  +|..+|...+.+... ........++++++.++++++   .++||||++.||..||||||+
T Consensus       243 ~~~~~~~~~c~~i~~~~--~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi  320 (390)
T PRK07411        243 ELKLRPNPERPVIEKLI--DYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV  320 (390)
T ss_pred             EEeccCCCCCCcccccc--chhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE
Confidence            56678889887765554  566666422211111 123445679999999888643   689999999999999999999


Q ss_pred             EeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCC
Q 029984          109 NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT  182 (184)
Q Consensus       109 ~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~  182 (184)
                      |||+.++...      ... .....++++++||+||.+|.||..+++.|++.||++ +.|.||+.+|.++..|.
T Consensus       321 niP~~~l~~~------~~~-~~l~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~  386 (390)
T PRK07411        321 LVPLPDIENG------PGV-EKVKELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPS  386 (390)
T ss_pred             EccHHHhhcc------cch-HHHhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence            9998532111      001 123345678999999999999999999999999985 57999999999987664

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.82  E-value=9.5e-20  Score=159.71  Aligned_cols=141  Identities=20%  Similarity=0.324  Sum_probs=108.1

Q ss_pred             ceeeecCCCccccccccc-cC-ccc-------c-cCCCCcccCHHHHHHHHhC-CCeEEEcCChhhHh--------cCCC
Q 029984           44 DNIGFISSKILSFCPKAS-LR-GNL-------E-AVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHA  104 (184)
Q Consensus        44 ~~~~~l~~~~~~~~~~~~-~~-~~~-------~-~~~~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~--------~ghI  104 (184)
                      ..+.+++|++..|..... .. ...       . .......++.+++.+.+++ +++|||+|+++||.        .|||
T Consensus       108 ~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHI  187 (610)
T PRK09629        108 SGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHI  187 (610)
T ss_pred             CCEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCC
Confidence            456789999999986321 11 100       0 0011224677888877764 47899999999995        6999


Q ss_pred             CCcEEecccccc-CCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhC-CC
Q 029984          105 TGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-GL  180 (184)
Q Consensus       105 pgAi~ip~~~~~-~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~-g~  180 (184)
                      |||+|+|+.... ..+.+..++.++.++..  ++++++||+||++|.+|..+++.|+.+||+||++|+|||.+|... ++
T Consensus       188 PGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~l  267 (610)
T PRK09629        188 PGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDT  267 (610)
T ss_pred             CCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCC
Confidence            999999985433 34556777888887764  578999999999999999999999999999999999999999885 68


Q ss_pred             CCCC
Q 029984          181 PTEP  184 (184)
Q Consensus       181 p~~~  184 (184)
                      |+++
T Consensus       268 Pv~~  271 (610)
T PRK09629        268 PVEV  271 (610)
T ss_pred             cccc
Confidence            8863

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.82  E-value=1.1e-19  Score=159.37  Aligned_cols=111  Identities=21%  Similarity=0.220  Sum_probs=94.1

Q ss_pred             cccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHHhcC--CCCCeEEEEc
Q 029984           73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTRF--RKHDEIIVGC  144 (184)
Q Consensus        73 ~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~l--~~~~~ivv~c  144 (184)
                      ..++++++.++++++ ++|||+|++.+|..||||||+|+|+....     ..+++.+.+.++..+..+  +++++|||||
T Consensus         9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd   88 (610)
T PRK09629          9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD   88 (610)
T ss_pred             ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence            468899999998764 88999999999999999999999975321     134556667777776664  7899999999


Q ss_pred             CCC-hhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          145 QSG-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       145 ~~g-~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      ++| .++.++++.|+.+|+++|++|+||+.+|+.+|+|++
T Consensus        89 ~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~  128 (610)
T PRK09629         89 DEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLS  128 (610)
T ss_pred             CCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccc
Confidence            976 478899999999999999999999999999999975

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.82  E-value=6e-20  Score=122.31  Aligned_cols=80  Identities=43%  Similarity=0.678  Sum_probs=69.7

Q ss_pred             hCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHH--HhcCCCCCeEEEEcCCChhHHHHHHHHHHccC
Q 029984           85 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV--STRFRKHDEIIVGCQSGKRSMMAATDLLNAGF  162 (184)
Q Consensus        85 ~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~  162 (184)
                      .++..|||+|++.||..+|||||+|+|+.            .+...  ...++++++|||||+.|.++..+++.|++.||
T Consensus         8 ~~~~~iiD~R~~~~~~~~~i~ga~~~~~~------------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~   75 (89)
T cd00158           8 DEDAVLLDVREPEEYAAGHIPGAINIPLS------------ELEERAALLELDKDKPIVVYCRSGNRSARAAKLLRKAGG   75 (89)
T ss_pred             CCCeEEEECCCHHHHhccccCCCEecchH------------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHHHHHhCc
Confidence            34589999999999999999999999983            22222  44567899999999999999999999999999


Q ss_pred             CCeeeccccHHHHH
Q 029984          163 AGITDIAGGFAAWR  176 (184)
Q Consensus       163 ~~v~~l~GG~~~W~  176 (184)
                      +++++|.||+.+|+
T Consensus        76 ~~v~~l~gG~~~w~   89 (89)
T cd00158          76 TNVYNLEGGMLAWK   89 (89)
T ss_pred             ccEEEecCChhhcC
Confidence            99999999999994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.82  E-value=9.7e-20  Score=125.12  Aligned_cols=80  Identities=31%  Similarity=0.547  Sum_probs=67.8

Q ss_pred             CCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhHHHHHHHHHHccCC
Q 029984           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFA  163 (184)
Q Consensus        86 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~  163 (184)
                      ....+||+|+++||..||||||+|||+.            .+......  .+++++||+||++|.+|..++..|.+.||+
T Consensus        17 ~~~~lIDvR~~~ef~~ghIpgAinip~~------------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~   84 (101)
T TIGR02981        17 AAEHWIDVRIPEQYQQEHIQGAINIPLK------------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT   84 (101)
T ss_pred             cCCEEEECCCHHHHhcCCCCCCEECCHH------------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence            3467999999999999999999999983            34443333  256789999999999999999999999999


Q ss_pred             CeeeccccHHHHHhC
Q 029984          164 GITDIAGGFAAWRQN  178 (184)
Q Consensus       164 ~v~~l~GG~~~W~~~  178 (184)
                      +++++ ||+.+|..-
T Consensus        85 ~v~~~-GG~~~~~~~   98 (101)
T TIGR02981        85 HAENA-GGIKDIAMP   98 (101)
T ss_pred             eEEec-CCHHHhhhh
Confidence            99885 999999753

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>PRK01415 hypothetical protein; Validated

Probab=99.82  E-value=3.2e-19  Score=140.00  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=83.5

Q ss_pred             CCcccCHHHHHHHHhC-CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChh
Q 029984           71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  149 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~r  149 (184)
                      ..+.++++++.+++++ ++++||||++.||..||||||+|+|...+.     ..+..+. ....++++++|++||.+|.|
T Consensus       110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~-----e~~~~~~-~~~~~~k~k~Iv~yCtgGiR  183 (247)
T PRK01415        110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFK-----QFPAWVQ-QNQELLKGKKIAMVCTGGIR  183 (247)
T ss_pred             CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHh-----hhHHHHh-hhhhhcCCCeEEEECCCChH
Confidence            4567899999998875 488999999999999999999999973110     0011111 12345789999999999999


Q ss_pred             HHHHHHHHHHccCCCeeeccccHHHHHhCC
Q 029984          150 SMMAATDLLNAGFAGITDIAGGFAAWRQNG  179 (184)
Q Consensus       150 s~~~~~~L~~~G~~~v~~l~GG~~~W~~~g  179 (184)
                      |..++..|.+.||++|+.|.||+.+|.+..
T Consensus       184 s~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~  213 (247)
T PRK01415        184 CEKSTSLLKSIGYDEVYHLKGGILQYLEDT  213 (247)
T ss_pred             HHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence            999999999999999999999999998753

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.81  E-value=1.6e-19  Score=124.66  Aligned_cols=78  Identities=31%  Similarity=0.532  Sum_probs=66.6

Q ss_pred             CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcCCChhHHHHHHHHHHccCCC
Q 029984           87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAGFAG  164 (184)
Q Consensus        87 ~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~  164 (184)
                      +-++||+|+++||..+|||||+|+|+.            .+......+  +++++||+||++|.+|..++..|.+.||++
T Consensus        20 ~~~lIDvR~~~ef~~ghIpGAiniP~~------------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~   87 (104)
T PRK10287         20 AEHWIDVRVPEQYQQEHVQGAINIPLK------------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH   87 (104)
T ss_pred             CCEEEECCCHHHHhcCCCCccEECCHH------------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence            357999999999999999999999983            344444443  456889999999999999999999999999


Q ss_pred             eeeccccHHHHHh
Q 029984          165 ITDIAGGFAAWRQ  177 (184)
Q Consensus       165 v~~l~GG~~~W~~  177 (184)
                      +++ .||+.+|..
T Consensus        88 v~~-~GG~~~~~~   99 (104)
T PRK10287         88 AEN-AGGLKDIAM   99 (104)
T ss_pred             EEe-cCCHHHHhh
Confidence            987 699999975

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.81  E-value=2.6e-19  Score=146.53  Aligned_cols=113  Identities=19%  Similarity=0.224  Sum_probs=91.9

Q ss_pred             CcccCHHHHHHHHhC-CCeEEEcC--------C-hhhHhcCCCCCcEEeccccccCC-----CCCCCHHHHHHHHhcC--
Q 029984           72 PTSVPVRVAHELLQA-GHRYLDVR--------T-PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTRF--  134 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~liDvR--------~-~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~l--  134 (184)
                      ...++++++.+++++ +.+|||+|        + ..+|..||||||+|+++..+...     .++..++.++..+..+  
T Consensus        21 ~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi  100 (320)
T PLN02723         21 EPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGI  100 (320)
T ss_pred             CceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCC
Confidence            357899999998875 48899996        3 37899999999999997544321     3455667777777764  


Q ss_pred             CCCCeEEEEcCCCh-hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          135 RKHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       135 ~~~~~ivv~c~~g~-rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      .++++|||||+.|. .+.++++.|+.+||++|++|+||+.+|.++|+|+++
T Consensus       101 ~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~  151 (320)
T PLN02723        101 ENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVES  151 (320)
T ss_pred             CCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCccc
Confidence            57889999998776 467888999999999999999999999999999863

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.80  E-value=2.9e-19  Score=141.77  Aligned_cols=102  Identities=18%  Similarity=0.233  Sum_probs=81.4

Q ss_pred             CCcccCHHHHHHHHhC-------CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEE
Q 029984           71 VPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVG  143 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~-------~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~  143 (184)
                      ....++++++.+++++       +.++||||++.||+.||||||+|+|+..+.     ..+..+......+ ++++|++|
T Consensus       108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~-----~~~~~l~~~~~~~-kdk~Ivvy  181 (257)
T PRK05320        108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFT-----EFPEALAAHRADL-AGKTVVSF  181 (257)
T ss_pred             cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhh-----hhHHHHHhhhhhc-CCCeEEEE
Confidence            4567888898888765       268999999999999999999999984210     0011122222223 78999999


Q ss_pred             cCCChhHHHHHHHHHHccCCCeeeccccHHHHHhC
Q 029984          144 CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       144 c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~  178 (184)
                      |.+|.||..++..|++.||++|+.|.||+.+|.++
T Consensus       182 C~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~  216 (257)
T PRK05320        182 CTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE  216 (257)
T ss_pred             CCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence            99999999999999999999999999999999874

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.80  E-value=2.5e-19  Score=125.49  Aligned_cols=96  Identities=22%  Similarity=0.410  Sum_probs=73.8

Q ss_pred             ccCHHHHHHHHhCC---CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcC-CC
Q 029984           74 SVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQ-SG  147 (184)
Q Consensus        74 ~i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~-~g  147 (184)
                      .++++++.+++..+   .++||||++ ||..||||||+|+|+..+.        ..+.......  +++++|||||. +|
T Consensus         3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~--------~~~~~~~~~~~~~~~~~iv~yC~~~~   73 (113)
T cd01531           3 YISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFK--------AQLNQLVQLLSGSKKDTVVFHCALSQ   73 (113)
T ss_pred             cCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHh--------hCHHHHHHHHhcCCCCeEEEEeecCC
Confidence            47788888887653   679999999 9999999999999984211        1122222222  56789999998 67


Q ss_pred             hhHHHHHHHHHH--------ccCCCeeeccccHHHHHhC
Q 029984          148 KRSMMAATDLLN--------AGFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       148 ~rs~~~~~~L~~--------~G~~~v~~l~GG~~~W~~~  178 (184)
                      .|+..++..|.+        .|+.||++|+||+.+|++.
T Consensus        74 ~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~  112 (113)
T cd01531          74 VRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS  112 (113)
T ss_pred             cchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence            788888877654        4999999999999999864

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.77  E-value=2e-18  Score=140.67  Aligned_cols=102  Identities=24%  Similarity=0.338  Sum_probs=81.6

Q ss_pred             CCcccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChh
Q 029984           71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  149 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~r  149 (184)
                      ....++++++.+++.++ ++|||||++.||..||||||+|+|+..+..     .++.+.... ...++++||+||.+|.|
T Consensus       110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~-----~~~~l~~~~-~~~kdk~IvvyC~~G~R  183 (314)
T PRK00142        110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFRE-----FPPWVEENL-DPLKDKKVVMYCTGGIR  183 (314)
T ss_pred             CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhh-----hHHHHHHhc-CCCCcCeEEEECCCCcH
Confidence            34568889998887654 889999999999999999999999842210     011121211 23578999999999999


Q ss_pred             HHHHHHHHHHccCCCeeeccccHHHHHhC
Q 029984          150 SMMAATDLLNAGFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       150 s~~~~~~L~~~G~~~v~~l~GG~~~W~~~  178 (184)
                      +..++..|.+.||++|+.|+||+.+|.+.
T Consensus       184 s~~aa~~L~~~Gf~~V~~L~GGi~~w~~~  212 (314)
T PRK00142        184 CEKASAWMKHEGFKEVYQLEGGIITYGED  212 (314)
T ss_pred             HHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence            99999999999999999999999999774

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.77  E-value=1e-18  Score=122.38  Aligned_cols=94  Identities=24%  Similarity=0.333  Sum_probs=69.7

Q ss_pred             ccCHHHHHHHHhCC-------CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEc
Q 029984           74 SVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGC  144 (184)
Q Consensus        74 ~i~~~~~~~~~~~~-------~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c  144 (184)
                      .+++++++++++++       .+|||||++ ||..||||||+|+|+..+        .+.+......+  .+.++||+||
T Consensus         3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~--------~~~~~~~~~~~~~~~~~~iv~~C   73 (113)
T cd01443           3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSC--------YQTLPQVYALFSLAGVKLAIFYC   73 (113)
T ss_pred             ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHH--------HHHHHHHHHHhhhcCCCEEEEEC
Confidence            47788999988764       689999999 999999999999998421        11122222222  3467899999


Q ss_pred             CC-ChhHHHHHHHHH----HccC--CCeeeccccHHHHH
Q 029984          145 QS-GKRSMMAATDLL----NAGF--AGITDIAGGFAAWR  176 (184)
Q Consensus       145 ~~-g~rs~~~~~~L~----~~G~--~~v~~l~GG~~~W~  176 (184)
                      .+ |.||..++..|.    +.||  .++++|+||+.+|.
T Consensus        74 ~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          74 GSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             CCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence            96 678877775544    4575  68999999999995

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.76  E-value=2.9e-18  Score=141.07  Aligned_cols=104  Identities=28%  Similarity=0.422  Sum_probs=78.2

Q ss_pred             HHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCC----------C---------CCCC---HHHHHHHHhcC
Q 029984           77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------G---------MTKN---LKFVEEVSTRF  134 (184)
Q Consensus        77 ~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~----------~---------~~~~---~~~~~~~~~~l  134 (184)
                      ..++.++..++.+|||||++.||..||||||+|+|+......          +         .+..   .+.+...+..+
T Consensus         5 ~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~~   84 (345)
T PRK11784          5 AQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWADF   84 (345)
T ss_pred             HHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHhc
Confidence            456777777889999999999999999999999999532210          0         0111   11222222333


Q ss_pred             C-CCCeEEEEcC-CChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCC
Q 029984          135 R-KHDEIIVGCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP  181 (184)
Q Consensus       135 ~-~~~~ivv~c~-~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p  181 (184)
                      + ++++||+||. +|.||..+++.|...|| +++.|+||+.+|+..+.+
T Consensus        85 ~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~  132 (345)
T PRK11784         85 PRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVID  132 (345)
T ss_pred             ccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHH
Confidence            3 7889999995 78999999999999999 589999999999987653

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.74  E-value=4.9e-18  Score=137.97  Aligned_cols=95  Identities=29%  Similarity=0.430  Sum_probs=71.3

Q ss_pred             CCeEEEcCChhhHhcCCCCCcEEeccccccCC---CCC-------------------CCHHHHHHHHhcCCCCCeEEEEc
Q 029984           87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS---GMT-------------------KNLKFVEEVSTRFRKHDEIIVGC  144 (184)
Q Consensus        87 ~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~---~~~-------------------~~~~~~~~~~~~l~~~~~ivv~c  144 (184)
                      +..|||||++.||..||||||+|||+......   |..                   .-++.+.......++++.||+||
T Consensus         2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC   81 (311)
T TIGR03167         2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC   81 (311)
T ss_pred             CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence            35799999999999999999999998432111   000                   01122333334445566699999


Q ss_pred             C-CChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCC
Q 029984          145 Q-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT  182 (184)
Q Consensus       145 ~-~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~  182 (184)
                      . +|.||..+++.|...|| ++++|+||+.+|+..+.+.
T Consensus        82 ~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~  119 (311)
T TIGR03167        82 WRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQ  119 (311)
T ss_pred             CCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhh
Confidence            5 78999999999999999 6999999999999887543

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.74  E-value=1.3e-17  Score=138.30  Aligned_cols=95  Identities=33%  Similarity=0.530  Sum_probs=78.2

Q ss_pred             CCcccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHH-HhcCCCCCeEEEEcCCChh
Q 029984           71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV-STRFRKHDEIIVGCQSGKR  149 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ivv~c~~g~r  149 (184)
                      ....++.+++.++ ..+.+|||+|+++||..+|||||+|+|+..           ..... ...++++++||+||++|.+
T Consensus       259 ~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgAinip~~~-----------l~~~~~~~~~~~~~~IvvyC~~G~r  326 (355)
T PRK05597        259 FGEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGAHNVPLSA-----------IREGANPPSVSAGDEVVVYCAAGVR  326 (355)
T ss_pred             cccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCCEEeCHHH-----------hhhccccccCCCCCeEEEEcCCCHH
Confidence            3456778888744 456889999999999999999999999842           11111 1235778899999999999


Q ss_pred             HHHHHHHHHHccCCCeeeccccHHHHHh
Q 029984          150 SMMAATDLLNAGFAGITDIAGGFAAWRQ  177 (184)
Q Consensus       150 s~~~~~~L~~~G~~~v~~l~GG~~~W~~  177 (184)
                      |..+++.|++.||++|++|+||+.+|.+
T Consensus       327 S~~Aa~~L~~~G~~nV~~L~GGi~~W~~  354 (355)
T PRK05597        327 SAQAVAILERAGYTGMSSLDGGIEGWLD  354 (355)
T ss_pred             HHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence            9999999999999999999999999975

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.72  E-value=6.3e-17  Score=129.29  Aligned_cols=114  Identities=23%  Similarity=0.265  Sum_probs=94.1

Q ss_pred             CCcccCHHHHHHHHhC------CCeEEEcCCh--hhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHHhc--CC
Q 029984           71 VPTSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FR  135 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~------~~~liDvR~~--~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~--l~  135 (184)
                      ....++++.+.+.+.+      +..+++++..  .+|..+|||||+++++....     ..+++.+++.+...+..  +.
T Consensus         9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~   88 (285)
T COG2897           9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIR   88 (285)
T ss_pred             cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence            4556888888887753      4556666555  89999999999999986543     24678888888888776  57


Q ss_pred             CCCeEEEEcCC-ChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          136 KHDEIIVGCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       136 ~~~~ivv~c~~-g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      .+.+||+|.+. +..|.+++|.|+-+|++||++|+||+++|+++|+|+++
T Consensus        89 ~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~  138 (285)
T COG2897          89 NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLET  138 (285)
T ss_pred             CCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccC
Confidence            89999999975 44789999999999999999999999999999999873

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.70  E-value=9.5e-17  Score=115.36  Aligned_cols=102  Identities=20%  Similarity=0.177  Sum_probs=74.0

Q ss_pred             cCHHHHHHHHhC---CCeEEEcCChhhHhcCCCCCcEEeccccccCCC----------CCCCHHHHHHHHhcCCCCCeEE
Q 029984           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG----------MTKNLKFVEEVSTRFRKHDEII  141 (184)
Q Consensus        75 i~~~~~~~~~~~---~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~iv  141 (184)
                      ++++++.+++++   +.+|||+|++.+|..+|||||+|+|+.......          ++..++.... +... ++++||
T Consensus         2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~-~~~~VV   79 (132)
T cd01446           2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDR-LRRG-ESLAVV   79 (132)
T ss_pred             cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHH-HhcC-CCCeEE
Confidence            678888888864   478999999999999999999999986422110          1122222222 2222 578999


Q ss_pred             EEcCCChh---------HHHHHHHHHH--ccCCCeeeccccHHHHHhC
Q 029984          142 VGCQSGKR---------SMMAATDLLN--AGFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       142 v~c~~g~r---------s~~~~~~L~~--~G~~~v~~l~GG~~~W~~~  178 (184)
                      |||.++.+         +..++..|..  .++.+|++|+||+.+|.+.
T Consensus        80 vYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~  127 (132)
T cd01446          80 VYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE  127 (132)
T ss_pred             EEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence            99997764         6666777777  4677899999999999763

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.70  E-value=4.3e-17  Score=135.60  Aligned_cols=93  Identities=18%  Similarity=0.280  Sum_probs=72.8

Q ss_pred             ccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCC---CcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChh
Q 029984           74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  149 (184)
Q Consensus        74 ~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIp---gAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~r  149 (184)
                      .++++++.++++++ .++||||+++||+.+|||   ||+|||+..+...     .+.. .....++++ +|||||.+|.|
T Consensus       272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~-----~~~~-~~l~~~~~~-~Ivv~C~sG~R  344 (370)
T PRK05600        272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDD-----ADIL-HALSPIDGD-NVVVYCASGIR  344 (370)
T ss_pred             ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcc-----hhhh-hhccccCCC-cEEEECCCChh
Confidence            68889998888765 689999999999999998   5999998422100     0001 122334555 89999999999


Q ss_pred             HHHHHHHHHHccCCC-eeeccccHH
Q 029984          150 SMMAATDLLNAGFAG-ITDIAGGFA  173 (184)
Q Consensus       150 s~~~~~~L~~~G~~~-v~~l~GG~~  173 (184)
                      |..++..|++.||++ |++|.||+.
T Consensus       345 S~~Aa~~L~~~G~~~~v~~l~GG~~  369 (370)
T PRK05600        345 SADFIEKYSHLGHELTLHNLPGGVN  369 (370)
T ss_pred             HHHHHHHHHHcCCCCceEEeccccC
Confidence            999999999999986 899999975

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.58  E-value=4.8e-15  Score=119.25  Aligned_cols=152  Identities=20%  Similarity=0.283  Sum_probs=111.8

Q ss_pred             ccCCCCCCCcCCCccccCCCcc------ceeeecCCCccccccccccCc-ccccCCCCcccCHHHHHHHHhCC--CeEEE
Q 029984           22 VLCPHGNNRRGLLSLTVDQQRC------DNIGFISSKILSFCPKASLRG-NLEAVGVPTSVPVRVAHELLQAG--HRYLD   92 (184)
Q Consensus        22 ~~~~~~~~~~~~~~l~~~p~~~------~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~--~~liD   92 (184)
                      +|+..++.+|+...+.+.+.|.      .+...+  +|..+|....... +.........++..+++++++++  .++||
T Consensus       261 lfdg~~~~~r~irlR~r~~~C~~Cg~n~tit~~~--dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llD  338 (427)
T KOG2017|consen  261 LFDGLSGHFRTIRLRSRRPKCAVCGKNPTITSLI--DYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLD  338 (427)
T ss_pred             EEecccceeEEEEeccCCCCCcccCCCCccCccc--chhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEe
Confidence            6677778888888888888876      444444  7888886333322 33344567789999999999874  88999


Q ss_pred             cCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC-CCCCeEEEEcCCChhHHHHHHHHHHccCC-Ceeeccc
Q 029984           93 VRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEIIVGCQSGKRSMMAATDLLNAGFA-GITDIAG  170 (184)
Q Consensus        93 vR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ivv~c~~g~rs~~~~~~L~~~G~~-~v~~l~G  170 (184)
                      ||++.||+..|+|+|+|||+.+.....      . ++....+ ...++|+|+|..|+.|..+++.|++...+ +|+.+-|
T Consensus       339 vRp~~~~eI~~lP~avNIPL~~l~~~~------~-~~~~~~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvig  411 (427)
T KOG2017|consen  339 VRPSHEYEICRLPEAVNIPLKELRSRS------G-KKLQGDLNTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIG  411 (427)
T ss_pred             ccCcceEEEEecccccccchhhhhhhh------h-hhhcccccccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhh
Confidence            999999999999999999984221110      0 1222223 34677999999999999999999987653 5667889


Q ss_pred             cHHHHHhCCCCC
Q 029984          171 GFAAWRQNGLPT  182 (184)
Q Consensus       171 G~~~W~~~g~p~  182 (184)
                      |+.+|..+-.|.
T Consensus       412 Gl~~w~~~vd~~  423 (427)
T KOG2017|consen  412 GLKAWAAKVDPN  423 (427)
T ss_pred             HHHHHHHhcCcC
Confidence            999998875443

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.52  E-value=5.9e-14  Score=120.74  Aligned_cols=75  Identities=17%  Similarity=0.270  Sum_probs=65.9

Q ss_pred             HHhCCCeEEEcCChhhHhcCCCCC----cEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHH
Q 029984           83 LLQAGHRYLDVRTPEEFSAGHATG----AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL  158 (184)
Q Consensus        83 ~~~~~~~liDvR~~~e~~~ghIpg----Ai~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~  158 (184)
                      .+.++.++||||+++||..+||||    |+|+|+            ..+......+++++++|+||.+|.||..++..|.
T Consensus       403 ~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~------------~~l~~~~~~l~~~~~iivyC~~G~rS~~aa~~L~  470 (482)
T PRK01269        403 ELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPF------------YKLSTQFGDLDQSKTYLLYCDRGVMSRLQALYLR  470 (482)
T ss_pred             hcCCCCEEEECCCHHHHhcCCCCCCCceEEECCH------------HHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHHH
Confidence            335668999999999999999999    999998            3455555667889999999999999999999999


Q ss_pred             HccCCCeeecc
Q 029984          159 NAGFAGITDIA  169 (184)
Q Consensus       159 ~~G~~~v~~l~  169 (184)
                      +.||+||++|.
T Consensus       471 ~~G~~nv~~y~  481 (482)
T PRK01269        471 EQGFSNVKVYR  481 (482)
T ss_pred             HcCCccEEecC
Confidence            99999999875

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.36  E-value=7.8e-13  Score=104.84  Aligned_cols=101  Identities=23%  Similarity=0.315  Sum_probs=82.3

Q ss_pred             CcccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhH
Q 029984           72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs  150 (184)
                      .+-++++++.+++.++ .++||.|...||+.||..||++.+...+     -.-+..++...+.+ ++++|+.||.+|.|.
T Consensus       112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tF-----refP~~v~~~~~~~-~~KkVvmyCTGGIRC  185 (308)
T COG1054         112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETF-----REFPAWVEENLDLL-KDKKVVMYCTGGIRC  185 (308)
T ss_pred             cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhh-----hhhHHHHHHHHHhc-cCCcEEEEcCCceee
Confidence            4568889999988754 8899999999999999999999987311     12234444444443 466999999999999


Q ss_pred             HHHHHHHHHccCCCeeeccccHHHHHhC
Q 029984          151 MMAATDLLNAGFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       151 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~  178 (184)
                      .++..+|...||++||-|+||+-.+-++
T Consensus       186 EKas~~m~~~GF~eVyhL~GGIl~Y~e~  213 (308)
T COG1054         186 EKASAWMKENGFKEVYHLEGGILKYLED  213 (308)
T ss_pred             hhhHHHHHHhcchhhhcccchHHHHhhh
Confidence            9999999999999999999999888654

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.33  E-value=9.3e-12  Score=98.26  Aligned_cols=134  Identities=19%  Similarity=0.358  Sum_probs=95.2

Q ss_pred             ceeeecCCCccccccccccCccccc-CC-----CCcccCHHHHHHHH--------hCCCeEEEcCChhhHh---------
Q 029984           44 DNIGFISSKILSFCPKASLRGNLEA-VG-----VPTSVPVRVAHELL--------QAGHRYLDVRTPEEFS---------  100 (184)
Q Consensus        44 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~-----~~~~i~~~~~~~~~--------~~~~~liDvR~~~e~~---------  100 (184)
                      ..+-++++++..|+........... .+     ....+....+..+.        .+++..||.|...+|.         
T Consensus       115 ~~VslL~GG~~~Wk~~g~~~~s~~~~~p~~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~  194 (286)
T KOG1529|consen  115 TKVSLLNGGFRAWKAAGGPVDSSKVETPYSPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSG  194 (286)
T ss_pred             cEEEEecCcHHHHHHcCCccccccccCCCCCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCccc
Confidence            6678899999999873221111111 01     11222222222221        2348899999999986         


Q ss_pred             --cCCCCCcEEeccccccCC-CCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHH
Q 029984          101 --AGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW  175 (184)
Q Consensus       101 --~ghIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W  175 (184)
                        .||||||+|+|+...... +....++.+...+..  +..++|+++-|+.|..+...+-.|...| .++.+|+|+|.+|
T Consensus       195 ~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew  273 (286)
T KOG1529|consen  195 ATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEW  273 (286)
T ss_pred             CcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHH
Confidence              689999999999776654 444446677766554  5668999999999999999999999999 6799999999999


Q ss_pred             HhC
Q 029984          176 RQN  178 (184)
Q Consensus       176 ~~~  178 (184)
                      ...
T Consensus       274 ~~~  276 (286)
T KOG1529|consen  274 ALR  276 (286)
T ss_pred             hhc
Confidence            863

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=5.2e-12  Score=101.58  Aligned_cols=97  Identities=24%  Similarity=0.351  Sum_probs=74.6

Q ss_pred             CCcccCHHHHHHHHhCC-------CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC------CCC
Q 029984           71 VPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF------RKH  137 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~~-------~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l------~~~  137 (184)
                      ....|+++.++.++++.       ++|||+|-+.||..|||+||+||+..           +.+...+-..      .+.
T Consensus       154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~-----------~~~~~~f~~~~~~~~~~~~  222 (325)
T KOG3772|consen  154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSK-----------ELLQDFFLLKDGVPSGSKR  222 (325)
T ss_pred             cccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccH-----------hhhhhhhccccccccccCc
Confidence            34569999999998752       56899999999999999999999974           3444333221      123


Q ss_pred             CeEEEEcC-CChhHHHHHHHHHH------------ccCCCeeeccccHHHHHhC
Q 029984          138 DEIIVGCQ-SGKRSMMAATDLLN------------AGFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       138 ~~ivv~c~-~g~rs~~~~~~L~~------------~G~~~v~~l~GG~~~W~~~  178 (184)
                      ..+||||. +..|...+|..|+.            .-|..+|+|+||+.+|-..
T Consensus       223 ~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~  276 (325)
T KOG3772|consen  223 VILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN  276 (325)
T ss_pred             eeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence            46799997 77899999999984            3455699999999999553

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.28  E-value=3.5e-11  Score=95.05  Aligned_cols=111  Identities=23%  Similarity=0.307  Sum_probs=85.9

Q ss_pred             ccCHHHHHHHHhC-CCeEEEcC---------ChhhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHHhc--CCC
Q 029984           74 SVPVRVAHELLQA-GHRYLDVR---------TPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRK  136 (184)
Q Consensus        74 ~i~~~~~~~~~~~-~~~liDvR---------~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~--l~~  136 (184)
                      .++++-+.+.+.+ +..|||..         ...||..-|||||.++.++...     ...++..++.+++....  +++
T Consensus         6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n   85 (286)
T KOG1529|consen    6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVDN   85 (286)
T ss_pred             ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCCC
Confidence            4556666666554 58899984         3457888999999999986443     22455565665665554  577


Q ss_pred             CCeEEEEcC--CCh-hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          137 HDEIIVGCQ--SGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       137 ~~~ivv~c~--~g~-rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      +..+|||.+  .|+ .|.+++|+++..|+++|.+|+||+..|+..|+|+++
T Consensus        86 ~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s  136 (286)
T KOG1529|consen   86 GDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDS  136 (286)
T ss_pred             CCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccc
Confidence            889999998  676 478999999999999999999999999999999863

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=98.59  E-value=1.5e-07  Score=75.65  Aligned_cols=95  Identities=20%  Similarity=0.335  Sum_probs=73.8

Q ss_pred             CcccCHHHHHHHHhCC-------CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCeEEE
Q 029984           72 PTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIV  142 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~~-------~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv  142 (184)
                      -.+|+++.++.+++..       -.|||.|=+.||..|||-.|+||.-.           +.+...+..  +.-..-+|+
T Consensus       241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~-----------~~l~~~F~hkplThp~aLif  309 (427)
T COG5105         241 IQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST-----------KKLGLLFRHKPLTHPRALIF  309 (427)
T ss_pred             hhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH-----------HHHHHHHHhccccCceeEEE
Confidence            3568999999988753       45999999999999999999999863           555554442  222456899


Q ss_pred             EcC-CChhHHHHHHHHHHc------------cCCCeeeccccHHHHHh
Q 029984          143 GCQ-SGKRSMMAATDLLNA------------GFAGITDIAGGFAAWRQ  177 (184)
Q Consensus       143 ~c~-~g~rs~~~~~~L~~~------------G~~~v~~l~GG~~~W~~  177 (184)
                      +|. +..|+...|..|+..            -|..|++|+||++.+-.
T Consensus       310 HCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~  357 (427)
T COG5105         310 HCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS  357 (427)
T ss_pred             EeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence            998 778999999999863            35679999999987643

>COG2603 Predicted ATPase [General function prediction only]

Probab=97.68  E-value=4.3e-05  Score=61.04  Aligned_cols=99  Identities=29%  Similarity=0.357  Sum_probs=64.5

Q ss_pred             HHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCC---------CCCCCH-------------HHHHHHHhcC
Q 029984           77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS---------GMTKNL-------------KFVEEVSTRF  134 (184)
Q Consensus        77 ~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~---------~~~~~~-------------~~~~~~~~~l  134 (184)
                      .+....++..+..+||||.|-||..|+.|+++|+|.....+.         ......             .++-......
T Consensus         5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f   84 (334)
T COG2603           5 EQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF   84 (334)
T ss_pred             HHHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            355666777778899999999999999999999998432211         000000             0000111112


Q ss_pred             CCCCeEEEEcC-CChhHHHHHHHH-HHccCCCeeeccccHHHHH
Q 029984          135 RKHDEIIVGCQ-SGKRSMMAATDL-LNAGFAGITDIAGGFAAWR  176 (184)
Q Consensus       135 ~~~~~ivv~c~-~g~rs~~~~~~L-~~~G~~~v~~l~GG~~~W~  176 (184)
                      ..+.++-++|. +|.|+...+.+| ...|++ .--+.||..+.+
T Consensus        85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr  127 (334)
T COG2603          85 QEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR  127 (334)
T ss_pred             HHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence            23556666687 566999999999 677875 444679988764

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=97.34  E-value=0.0019  Score=46.48  Aligned_cols=86  Identities=20%  Similarity=0.194  Sum_probs=51.3

Q ss_pred             cccCHHHHHHHHhCC-CeEEEcCChhhHhcCC----------CCCc--EEeccccccCCCCCCCHHHHHHHHhcC-CCCC
Q 029984           73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGH----------ATGA--INVPYMYRVGSGMTKNLKFVEEVSTRF-RKHD  138 (184)
Q Consensus        73 ~~i~~~~~~~~~~~~-~~liDvR~~~e~~~gh----------IpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~l-~~~~  138 (184)
                      ..++.++++.+.+.+ -.|||.|+..|.....          -+|-  +++|...    .. .+++.+......+ ..++
T Consensus        13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~----~~-~~~~~v~~f~~~~~~~~~   87 (135)
T TIGR01244        13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA----GD-ITPDDVETFRAAIGAAEG   87 (135)
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC----CC-CCHHHHHHHHHHHHhCCC
Confidence            456778888877777 5799999887643211          1232  5666531    11 1333444433333 2368


Q ss_pred             eEEEEcCCChhHHHHHHHHH-HccCC
Q 029984          139 EIIVGCQSGKRSMMAATDLL-NAGFA  163 (184)
Q Consensus       139 ~ivv~c~~g~rs~~~~~~L~-~~G~~  163 (184)
                      ||++||.+|.|+..++..+. ..|..
T Consensus        88 pvL~HC~sG~Rt~~l~al~~~~~g~~  113 (135)
T TIGR01244        88 PVLAYCRSGTRSSLLWGFRQAAEGVP  113 (135)
T ss_pred             CEEEEcCCChHHHHHHHHHHHHcCCC
Confidence            99999999999877664433 34653

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=97.32  E-value=0.0022  Score=44.56  Aligned_cols=76  Identities=16%  Similarity=0.206  Sum_probs=40.2

Q ss_pred             cccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCC--------------CcEEeccccccCCCCCCCHHHHHHHHhcCC-C
Q 029984           73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT--------------GAINVPYMYRVGSGMTKNLKFVEEVSTRFR-K  136 (184)
Q Consensus        73 ~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIp--------------gAi~ip~~~~~~~~~~~~~~~~~~~~~~l~-~  136 (184)
                      ..+++++++++.+.| -.||+.|+..|-.  +-|              .-+|+|..     +....++.+....+.+. .
T Consensus        13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~-----~~~~~~~~v~~f~~~l~~~   85 (110)
T PF04273_consen   13 GQPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVD-----GGAITEEDVEAFADALESL   85 (110)
T ss_dssp             CS--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE---------TTT--HHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecC-----CCCCCHHHHHHHHHHHHhC
Confidence            357889999999998 5699999875521  111              13677763     11123344444433332 3


Q ss_pred             CCeEEEEcCCChhHHHHHH
Q 029984          137 HDEIIVGCQSGKRSMMAAT  155 (184)
Q Consensus       137 ~~~ivv~c~~g~rs~~~~~  155 (184)
                      .+||++||.+|.|+...|.
T Consensus        86 ~~Pvl~hC~sG~Ra~~l~~  104 (110)
T PF04273_consen   86 PKPVLAHCRSGTRASALWA  104 (110)
T ss_dssp             TTSEEEE-SCSHHHHHHHH
T ss_pred             CCCEEEECCCChhHHHHHH
Confidence            5699999999999955543

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.19  E-value=0.0027  Score=55.30  Aligned_cols=94  Identities=18%  Similarity=0.187  Sum_probs=63.4

Q ss_pred             CcccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC-----CCCCeEEEEcCC
Q 029984           72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-----RKHDEIIVGCQS  146 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~ivv~c~~  146 (184)
                      .+.++++++..+  ....++|.|...||..+|+++++|+|..        ..+..+++. ..+     ...+.++++...
T Consensus       621 ~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~--------~~ea~l~~~-~~l~~~~~~~~~~~v~~~~~  689 (725)
T KOG1093|consen  621 CPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFN--------NHEADLDWL-RFLPGIVCSEGKKCVVVGKN  689 (725)
T ss_pred             CccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCcc--------chHHHHHHh-hcchHhHHhhCCeEEEeccc
Confidence            445677766655  4477899999999999999999999984        111222221 111     245566766665


Q ss_pred             ChhHHHHHHHHHHccCCCeeeccccHHHHH
Q 029984          147 GKRSMMAATDLLNAGFAGITDIAGGFAAWR  176 (184)
Q Consensus       147 g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~  176 (184)
                      ...+......+..+-+.++.++.+|++...
T Consensus       690 ~K~~~e~~~~~~~mk~p~~cil~~~~~~~~  719 (725)
T KOG1093|consen  690 DKHAAERLTELYVMKVPRICILHDGFNNID  719 (725)
T ss_pred             hHHHHHHhhHHHHhcccHHHHHHHHHhhcC
Confidence            556666666666666777888999988543

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=95.68  E-value=0.0015  Score=53.57  Aligned_cols=38  Identities=8%  Similarity=-0.038  Sum_probs=33.2

Q ss_pred             cCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEecc
Q 029984           75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY  112 (184)
Q Consensus        75 i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~  112 (184)
                      -+++++.+.+.....++|+|....|..+||+|++|+|.
T Consensus        16 ~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~   53 (314)
T PRK00142         16 EDPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTI   53 (314)
T ss_pred             CCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecH
Confidence            45677877777777789999999999999999999997

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B

Probab=95.25  E-value=0.2  Score=36.89  Aligned_cols=94  Identities=19%  Similarity=0.264  Sum_probs=42.9

Q ss_pred             CCcccCHHHHHHHHhCC-CeEEEcCChhhHhcC---CCCCc--EEeccccccCC------------------------CC
Q 029984           71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAG---HATGA--INVPYMYRVGS------------------------GM  120 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~g---hIpgA--i~ip~~~~~~~------------------------~~  120 (184)
                      ....++.++...+..-+ -.|||.|++.|....   .++|.  +|+|.......                        .+
T Consensus        26 ~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~  105 (164)
T PF13350_consen   26 NLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREM  105 (164)
T ss_dssp             --TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHG
T ss_pred             CcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHH
Confidence            34557778887777556 579999999998752   34455  45554211111                        00


Q ss_pred             C-CCHHHHHHHHhcC-CCCCeEEEEcCCCh-hHH-HHHHHHHHccCCC
Q 029984          121 T-KNLKFVEEVSTRF-RKHDEIIVGCQSGK-RSM-MAATDLLNAGFAG  164 (184)
Q Consensus       121 ~-~~~~~~~~~~~~l-~~~~~ivv~c~~g~-rs~-~~~~~L~~~G~~~  164 (184)
                      . .....+...+..+ +...+++++|..|. |.. .++-.|..+|++.
T Consensus       106 ~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~~  153 (164)
T PF13350_consen  106 LESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVPD  153 (164)
T ss_dssp             GGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred             HHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence            0 1123333333332 23369999999887 444 4556666778753

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

Probab=93.87  E-value=0.2  Score=35.42  Aligned_cols=83  Identities=19%  Similarity=0.202  Sum_probs=42.4

Q ss_pred             HHHHHhCC-CeEEEcCChhhHhcCCCCC--cEEeccccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCCh-hHHHH-
Q 029984           80 AHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSGK-RSMMA-  153 (184)
Q Consensus        80 ~~~~~~~~-~~liDvR~~~e~~~ghIpg--Ai~ip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g~-rs~~~-  153 (184)
                      .+.+.+.+ ..|||+++..++...+.+|  -.++|+.+......... +..++........+++|+|+|..|. ||..+ 
T Consensus        20 ~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~   99 (139)
T cd00127          20 KELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLV   99 (139)
T ss_pred             HHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHH
Confidence            33444455 5799999988752222222  35666532221111000 1112222222345679999999886 77644 


Q ss_pred             -HHHHHHccC
Q 029984          154 -ATDLLNAGF  162 (184)
Q Consensus       154 -~~~L~~~G~  162 (184)
                       +..+...|+
T Consensus       100 ~~~l~~~~~~  109 (139)
T cd00127         100 IAYLMKTLGL  109 (139)
T ss_pred             HHHHHHHcCC
Confidence             344444554

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=93.74  E-value=0.23  Score=40.79  Aligned_cols=94  Identities=16%  Similarity=0.112  Sum_probs=56.3

Q ss_pred             eeecCCCccccccccccC--c---c--cccCCCCcccCHHHHHHHHhC-CCeEEEcCChhhHhc---CCCC-CcEEeccc
Q 029984           46 IGFISSKILSFCPKASLR--G---N--LEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSA---GHAT-GAINVPYM  113 (184)
Q Consensus        46 ~~~l~~~~~~~~~~~~~~--~---~--~~~~~~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~---ghIp-gAi~ip~~  113 (184)
                      +..+.|+|..|.......  .   .  .......+.+...++.+.+.+ +..|||+|+..+|..   |||+ +..  |-.
T Consensus       102 v~~L~GG~~aw~~~~~~~~~~~~~~~~~~vl~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~q--psq  179 (311)
T TIGR03167       102 VPRLEGGYKAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGPQ--PSQ  179 (311)
T ss_pred             EEEecChHHHHHHhhhhhhhccCCCCceeccCCCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCCC--Cch
Confidence            457889999997633111  1   1  111222455666677666654 488999999999998   8888 421  110


Q ss_pred             cccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCCh
Q 029984          114 YRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (184)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~  148 (184)
                           .  .....+...+..++++++|++-|.+..
T Consensus       180 -----~--~fe~~L~~~l~~~~~~~~i~~e~es~~  207 (311)
T TIGR03167       180 -----K--RFENALAEALRRLDPGRPIFVEDESRR  207 (311)
T ss_pred             -----H--HHHHHHHHHHHhCCCCceEEEEeCchh
Confidence                 0  002333344444677788888887654

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>smart00195 DSPc Dual specificity phosphatase, catalytic domain

Probab=93.37  E-value=0.28  Score=34.79  Aligned_cols=80  Identities=19%  Similarity=0.219  Sum_probs=42.5

Q ss_pred             HHHHHhCC-CeEEEcCChhhHhc-CCCCCcEEeccccccCCCCCCCHHHHHH----HHhcCCCCCeEEEEcCCCh-hHHH
Q 029984           80 AHELLQAG-HRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEE----VSTRFRKHDEIIVGCQSGK-RSMM  152 (184)
Q Consensus        80 ~~~~~~~~-~~liDvR~~~e~~~-ghIpgAi~ip~~~~~~~~~~~~~~~~~~----~~~~l~~~~~ivv~c~~g~-rs~~  152 (184)
                      ++.+.+.+ ..||++++..+... ..+ .-+++|..+....   ...+.+..    +......+++|+|+|..|. ||..
T Consensus        19 ~~~l~~~gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~~~~---~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~   94 (138)
T smart00195       19 LALLKKLGITHVINVTNEVPNLNKKGF-TYLGVPILDNTET---KISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSAT   94 (138)
T ss_pred             HHHHHHcCCCEEEEccCCCCCCCCCCC-EEEEEECCCCCCC---ChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHH
Confidence            34444556 57899987654321 111 2356776421111   11122222    2222456789999999886 7765


Q ss_pred             --HHHHHHHccCC
Q 029984          153 --AATDLLNAGFA  163 (184)
Q Consensus       153 --~~~~L~~~G~~  163 (184)
                        +++.+...|++
T Consensus        95 v~~~yl~~~~~~~  107 (138)
T smart00195       95 LIIAYLMKYRNLS  107 (138)
T ss_pred             HHHHHHHHHhCCC
Confidence              33455566764

>PLN02727 NAD kinase

Probab=93.31  E-value=0.67  Score=43.22  Aligned_cols=74  Identities=15%  Similarity=0.156  Sum_probs=49.1

Q ss_pred             CcccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCC------------CcEEeccccccCCCCCCCHHHHHHHHhcC-C-C
Q 029984           72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT------------GAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-K  136 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIp------------gAi~ip~~~~~~~~~~~~~~~~~~~~~~l-~-~  136 (184)
                      ...+++++++++.+.| -.||+.|+..|- .+..+            .-+|+|..    ......++.+....+.+ + .
T Consensus       266 sgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs----~~~apt~EqVe~fa~~l~~sl  340 (986)
T PLN02727        266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVE----VRTAPSAEQVEKFASLVSDSS  340 (986)
T ss_pred             eCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecC----CCCCCCHHHHHHHHHHHHhhc
Confidence            4468899999988888 469999997762 22221            23577752    11223456666666666 3 4


Q ss_pred             CCeEEEEcCCChhH
Q 029984          137 HDEIIVGCQSGKRS  150 (184)
Q Consensus       137 ~~~ivv~c~~g~rs  150 (184)
                      .+||++||.+|.+.
T Consensus       341 pkPVLvHCKSGarR  354 (986)
T PLN02727        341 KKPIYLHSKEGVWR  354 (986)
T ss_pred             CCCEEEECCCCCch
Confidence            78999999999953

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=93.04  E-value=0.3  Score=41.80  Aligned_cols=83  Identities=17%  Similarity=0.256  Sum_probs=51.3

Q ss_pred             CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--------C-----CCCCeEEEEcCCChh-----
Q 029984           88 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--------F-----RKHDEIIVGCQSGKR-----  149 (184)
Q Consensus        88 ~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--------l-----~~~~~ivv~c~~g~r-----  149 (184)
                      ..+||.|+.++|..||+-.|.|++...     +++++..++.....        +     ..+..+.+. .+|..     
T Consensus       327 FFiVDcRpaeqynaGHlstaFhlDc~l-----mlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfm-GsGr~EED~Y  400 (669)
T KOG3636|consen  327 FFIVDCRPAEQYNAGHLSTAFHLDCVL-----MLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFM-GSGRDEEDNY  400 (669)
T ss_pred             EEEEeccchhhcccccchhhhcccHHH-----HhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEe-ccCcchHHHH
Confidence            679999999999999999999988632     23334333322221        2     223455554 44321     


Q ss_pred             HHHHHHHHHHccCCCeeeccccHHHHH
Q 029984          150 SMMAATDLLNAGFAGITDIAGGFAAWR  176 (184)
Q Consensus       150 s~~~~~~L~~~G~~~v~~l~GG~~~W~  176 (184)
                      -..+...+.+.+-.-|.++.||+....
T Consensus       401 mnMviA~FlQKnk~yVS~~~GGy~~lh  427 (669)
T KOG3636|consen  401 MNMVIAMFLQKNKLYVSFVQGGYKKLH  427 (669)
T ss_pred             HHHHHHHHHhcCceEEEEecchHHHHH
Confidence            223444555555556888999998765

>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.87  E-value=0.94  Score=31.86  Aligned_cols=81  Identities=19%  Similarity=0.151  Sum_probs=51.2

Q ss_pred             CCcccCHHHHHHHHhCC-CeEEEcCChhhHh-------------cCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCC-
Q 029984           71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFS-------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-  135 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~-------------~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~-  135 (184)
                      ....++++++.++...+ ..||-.|+..|-.             ..-+. -.+||..     +....++.++...+.++ 
T Consensus        12 VsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~-----~~~iT~~dV~~f~~Al~e   85 (130)
T COG3453          12 VSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVT-----GGGITEADVEAFQRALDE   85 (130)
T ss_pred             ecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecC-----CCCCCHHHHHHHHHHHHH
Confidence            44567888999988888 4588999755432             11111 3466652     22233455555544443 


Q ss_pred             CCCeEEEEcCCChhHHHHHHHH
Q 029984          136 KHDEIIVGCQSGKRSMMAATDL  157 (184)
Q Consensus       136 ~~~~ivv~c~~g~rs~~~~~~L  157 (184)
                      .+.|++.||.+|.||...+..-
T Consensus        86 aegPVlayCrsGtRs~~ly~~~  107 (130)
T COG3453          86 AEGPVLAYCRSGTRSLNLYGLG  107 (130)
T ss_pred             hCCCEEeeecCCchHHHHHHHH
Confidence            4779999999999997766443

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=91.90  E-value=0.37  Score=38.60  Aligned_cols=99  Identities=19%  Similarity=0.208  Sum_probs=53.4

Q ss_pred             cCHHHHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCC----CCCCCHHHHHHHH-hcCC----CCCeEEEEc
Q 029984           75 VPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGS----GMTKNLKFVEEVS-TRFR----KHDEIIVGC  144 (184)
Q Consensus        75 i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~----~~~~~~~~~~~~~-~~l~----~~~~ivv~c  144 (184)
                      ++++.+.+.+..+ ..++|.|+    +..||.+|+|+-+..++..    |.+.--..+.... ....    +..++|.|+
T Consensus         6 ~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~vilyD   81 (343)
T KOG1717|consen    6 KSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTVILYD   81 (343)
T ss_pred             HHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCcceeeecc
Confidence            4556666665544 88899999    6789999998876422110    0000000000000 0001    225678887


Q ss_pred             CCCh--h----HHH----HHHHHHHccCCCeeeccccHHHHHhC
Q 029984          145 QSGK--R----SMM----AATDLLNAGFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       145 ~~g~--r----s~~----~~~~L~~~G~~~v~~l~GG~~~W~~~  178 (184)
                      .+..  .    +..    .-..++..|+. ++.|.|||..++.+
T Consensus        82 ~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e  124 (343)
T KOG1717|consen   82 ESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE  124 (343)
T ss_pred             cccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence            6511  1    111    12455567874 88899999887654

>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species

Probab=89.09  E-value=1.2  Score=33.21  Aligned_cols=84  Identities=20%  Similarity=0.291  Sum_probs=38.3

Q ss_pred             HHHHHHHhCC-CeEEEcCChhhHhcCCCCC-----------cEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcC
Q 029984           78 RVAHELLQAG-HRYLDVRTPEEFSAGHATG-----------AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ  145 (184)
Q Consensus        78 ~~~~~~~~~~-~~liDvR~~~e~~~ghIpg-----------Ai~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~  145 (184)
                      .++.++.+.+ ..||=.=+..|...-.+|+           -+|+|..+...+......+.+.++...+..+++|+++|.
T Consensus        62 ~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~  141 (168)
T PF05706_consen   62 ADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCR  141 (168)
T ss_dssp             HHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-S
T ss_pred             HHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECC
Confidence            3455555555 2344466677776555553           246776432222110111233344444667889999999


Q ss_pred             CCh-hHHH-HHHHHHHcc
Q 029984          146 SGK-RSMM-AATDLLNAG  161 (184)
Q Consensus       146 ~g~-rs~~-~~~~L~~~G  161 (184)
                      +|. |+.. ++..|.++|
T Consensus       142 GGlGRtGlvAAcLLl~L~  159 (168)
T PF05706_consen  142 GGLGRTGLVAACLLLELG  159 (168)
T ss_dssp             SSSSHHHHHHHHHHHHH-
T ss_pred             CCCCHHHHHHHHHHHHHc
Confidence            775 7765 556666666

The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.

>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=86.65  E-value=1.9  Score=30.06  Aligned_cols=81  Identities=15%  Similarity=0.209  Sum_probs=40.9

Q ss_pred             HHhCC-CeEEEcCChhhH---hcCCCCCcEEeccccccCCCCCCCHHHHHHH-HhcCCCCCeEEEEcCCCh-hHHHHH--
Q 029984           83 LLQAG-HRYLDVRTPEEF---SAGHATGAINVPYMYRVGSGMTKNLKFVEEV-STRFRKHDEIIVGCQSGK-RSMMAA--  154 (184)
Q Consensus        83 ~~~~~-~~liDvR~~~e~---~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ivv~c~~g~-rs~~~~--  154 (184)
                      +.+.+ ..+|+++...+.   ....--.-.++|..+.........-+.+... .....++.+|+|+|..|. ||..++  
T Consensus        14 l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a   93 (133)
T PF00782_consen   14 LKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAA   93 (133)
T ss_dssp             HHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHH
T ss_pred             HHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHH
Confidence            33455 468999976543   2222224466775431111111111112222 222456789999999876 766533  


Q ss_pred             HHHHHccCC
Q 029984          155 TDLLNAGFA  163 (184)
Q Consensus       155 ~~L~~~G~~  163 (184)
                      ..+...|++
T Consensus        94 yLm~~~~~~  102 (133)
T PF00782_consen   94 YLMKKNGMS  102 (133)
T ss_dssp             HHHHHHTSS
T ss_pred             HHHHHcCCC
Confidence            344445653

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....

>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]

Probab=85.65  E-value=1.4  Score=33.00  Aligned_cols=33  Identities=27%  Similarity=0.465  Sum_probs=21.2

Q ss_pred             HHhcCCCCCeEEEEcCCCh-hHHHHH--HHHHHccC
Q 029984          130 VSTRFRKHDEIIVGCQSGK-RSMMAA--TDLLNAGF  162 (184)
Q Consensus       130 ~~~~l~~~~~ivv~c~~g~-rs~~~~--~~L~~~G~  162 (184)
                      +...+.+++.|+|+|..|. ||..+.  +.+...|.
T Consensus        98 i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~  133 (180)
T COG2453          98 IEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL  133 (180)
T ss_pred             HHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence            3334567779999999776 776533  45555444

>PRK12361 hypothetical protein; Provisional

Probab=85.56  E-value=2  Score=38.00  Aligned_cols=79  Identities=20%  Similarity=0.261  Sum_probs=41.4

Q ss_pred             HHHHHHHHhCC-CeEEEcCChhhHhc-CCCC---CcEEeccccccCCCCCCCHHHHHHHHhc----CCCCCeEEEEcCCC
Q 029984           77 VRVAHELLQAG-HRYLDVRTPEEFSA-GHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSG  147 (184)
Q Consensus        77 ~~~~~~~~~~~-~~liDvR~~~e~~~-ghIp---gAi~ip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ivv~c~~g  147 (184)
                      ..++..+.+.+ ..|||++.+.+... ...+   .-.++|..+...+    ..+.+....+.    ...+.+|+|+|..|
T Consensus       110 a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p----~~~~l~~a~~~i~~~~~~~~~VlVHC~~G  185 (547)
T PRK12361        110 PADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVP----TLAQLNQAINWIHRQVRANKSVVVHCALG  185 (547)
T ss_pred             cccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCC----cHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence            34555555555 57899995332211 1112   2467776432211    22333333333    34578899999977


Q ss_pred             h-hHHHH-HHHHHH
Q 029984          148 K-RSMMA-ATDLLN  159 (184)
Q Consensus       148 ~-rs~~~-~~~L~~  159 (184)
                      . ||..+ +..|..
T Consensus       186 ~sRSa~vv~ayLm~  199 (547)
T PRK12361        186 RGRSVLVLAAYLLC  199 (547)
T ss_pred             CCcHHHHHHHHHHH
Confidence            6 77653 344443

>PTZ00242 protein tyrosine phosphatase; Provisional

Probab=84.75  E-value=5  Score=29.75  Aligned_cols=79  Identities=18%  Similarity=0.228  Sum_probs=40.0

Q ss_pred             HHHHHHHhCC-CeEEEcCC----hhhHhcCCCCCcEEeccccccCCCCCCCH----HHHHHHHhc----CCCCCeEEEEc
Q 029984           78 RVAHELLQAG-HRYLDVRT----PEEFSAGHATGAINVPYMYRVGSGMTKNL----KFVEEVSTR----FRKHDEIIVGC  144 (184)
Q Consensus        78 ~~~~~~~~~~-~~liDvR~----~~e~~~ghIpgAi~ip~~~~~~~~~~~~~----~~~~~~~~~----l~~~~~ivv~c  144 (184)
                      ..++.+.+.+ ..+|.+-.    ++++...+|. -.++|..+    +.....    ++++.....    +.++.+|+|+|
T Consensus        31 ~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~-~~~~p~~D----~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC  105 (166)
T PTZ00242         31 LYIKELQRYNVTHLVRVCGPTYDAELLEKNGIE-VHDWPFDD----GAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHC  105 (166)
T ss_pred             HHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCE-EEecCCCC----CCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEEC
Confidence            3445555566 45777743    3445444553 34555531    111122    222222221    24588999999


Q ss_pred             CCCh-hHHHH-HHHHHHcc
Q 029984          145 QSGK-RSMMA-ATDLLNAG  161 (184)
Q Consensus       145 ~~g~-rs~~~-~~~L~~~G  161 (184)
                      ..|. ||..+ +..|.+.|
T Consensus       106 ~aGigRSgt~~a~yL~~~~  124 (166)
T PTZ00242        106 VAGLGRAPILVALALVEYG  124 (166)
T ss_pred             CCCCCHHHHHHHHHHHHhC
Confidence            9775 77653 44454444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
1tq1_A	129	Solution Structure Of At5g66040, A Putative Protein		2e-42
3tp9_A	474	Crystal Structure Of Alicyclobacillus Acidocaldariu		3e-07
2kl3_A	132	Solution Nmr Structure Of The Rhodanese-Like Domain		9e-06
3r2u_A	466	2.1 Angstrom Resolution Crystal Structure Of Metall		2e-05
3ilm_A	141	Crystal Structure Of The Alr3790 Protein From Anaba		3e-05
3k9r_A	115	X-Ray Structure Of The Rhodanese-Like Domain Of The		3e-05
3hix_A	106	Crystal Structure Of The Rhodanese_3 Like Domain Fr		3e-05
1gn0_A	108	Escherichia Coli Glpe Sulfurtransferase Soaked With		4e-05
2jtq_A	85	Rhodanese From E.Coli Length = 85		1e-04
3gk5_A	108	Crystal Structure Of Rhodanese-Related Protein (Tvg		3e-04
3nta_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		3e-04
3d1p_A	139	Atomic Resolution Structure Of Uncharacterized Prot		3e-04
2eg4_A	230	Crystal Structure Of Probable Thiosulfate Sulfurtra		5e-04
1gmx_A	108	Escherichia Coli Glpe Sulfurtransferase Length = 10		7e-04
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		8e-04
1qxn_A	137	Solution Structure Of The 30 Kda Polysulfide-Sulfur		8e-04

>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From Arabidosis Thaliana Length = 129

Iteration: 1
 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 92/113 (81%)
Query: 71  VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct: 16  VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQV 75
Query: 131 STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
           S+ F + D IIVGCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct: 76  SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 128

>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius Protein With Beta-Lactamase And Rhodanese Domains Length = 474

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           P  V   L Q G   LDVR  +E++ GH   A ++P        ++K    + +V     
Sbjct: 378 PDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP--------LSKLAAHIHDVP---- 425
Query: 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
           +   + V C++G RS +AA+ L   G   + +  GG+ AWR  G P E
Sbjct: 426 RDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNXVGGYEAWRGKGFPVE 473

>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From Anabaena Sp Alr3790 Protein. Northeast Structural Genomics Consortium Target Nsr437a Length = 132

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           LDVR    ++ GH  GA+ +P               V+  S+   K  +I V     +++
Sbjct: 24  LDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 72
Query: 151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
             A   L +AGF  ++++ GG AAW+  G PTE
Sbjct: 73  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 105

>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp. Aureus Col Length = 466

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 39/169 (23%)
Query: 26  HGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQ 85
           HG +  G +++  D+   + IG+     L++  + +L G+   V   T     + ++ + 
Sbjct: 309 HGGHIEGTINIPYDKNFINQIGWY----LNYDQEINLIGDYHLVSKATHTLQLIGYDDI- 363
Query: 86  AGHRY----------------------LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN 123
           AG++                       LDVR   E++ GH + A++VP+   +       
Sbjct: 364 AGYQLPQSKIQTRSIHSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLL------- 416
Query: 124 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 172
                E    F K+D I V CQSG RS +A   L + G+  I ++  G+
Sbjct: 417 -----ETDLPFNKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGY 460

>pdb|3ILM|A Chain A, Crystal Structure Of The Alr3790 Protein From Anabaena Sp. Northeast Structural Genomics Consortium Target Nsr437h Length = 141

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           LDVR    ++ GH  GA   P               V+  S+   K  +I V     +++
Sbjct: 21  LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 69
Query: 151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
             A   L +AGF  ++++ GG AAW+  G PTE
Sbjct: 70  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 102

>pdb|3K9R|A Chain A, X-Ray Structure Of The Rhodanese-Like Domain Of The Alr3790 Protein From Anabaena Sp. Northeast Structural Genomics Consortium Target Nsr437c. Length = 115

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           LDVR    ++ GH  GA   P               V+  S+   K  +I V     +++
Sbjct: 26  LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 74
Query: 151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
             A   L +AGF  ++++ GG AAW+  G PTE
Sbjct: 75  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 107

>pdb|3HIX|A Chain A, Crystal Structure Of The Rhodanese_3 Like Domain From Anabaena Sp Alr3790 Protein. Northeast Structural Genomics Consortium Target Nsr437i Length = 106

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           LDVR    ++ GH  GA   P               V+  S+   K  +I V     +++
Sbjct: 17  LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 65
Query: 151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
             A   L +AGF  ++++ GG AAW+  G PTE
Sbjct: 66  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 98

>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn Length = 108

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 75  VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           + V  AH+ LQ     L D+R P+ F+ GHA  A ++     +G+ M  N     +  T 
Sbjct: 7   INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTND-TLGAFMRDN-----DFDT- 59
Query: 134 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
                 ++V C  G  S  AA  LL  G+  +  I GGF AW Q   P E
Sbjct: 60  -----PVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW-QRQFPAE 103

>pdb|2JTQ|A Chain A, Rhodanese From E.Coli Length = 85

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 15/85 (17%)
Query: 90  YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE-VSTRF-RKHDEIIVGCQSG 147
           ++DVR PE++   H  GAIN+P            LK V+E ++T    K+D + V C +G
Sbjct: 4   WIDVRVPEQYQQEHVQGAINIP------------LKEVKERIATAVPDKNDTVKVYCNAG 51
Query: 148 KRSMMAATDLLNAGFAGITDIAGGF 172
           ++S  A   L   G+  + + AGG 
Sbjct: 52  RQSGQAKEILSEMGYTHVEN-AGGL 75

>pdb|3GK5|A Chain A, Crystal Structure Of Rhodanese-Related Protein (Tvg0868615) From Thermoplasma Volcanium, Northeast Structural Genomics Consortium Target Tvr109a Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS 146
            +  LDVR P E   G    +IN+P      S + +  K +E    R +K+  I   C  
Sbjct: 17  AYTVLDVREPFELIFGSIANSINIPI-----SELREKWKILE----RDKKYAVI---CAH 64
Query: 147 GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 182
           G RS  AA + L+     I D+ GG  +W + G P 
Sbjct: 65  GNRSA-AAVEFLSQLGLNIVDVEGGIQSWIEEGYPV 99

>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 19/89 (21%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR---KHDEIIVGCQSG 147
           LDVR P E   G   GA+N+P               V+E+  R     K  EII+ CQ G
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP---------------VDELRDRXHELPKDKEIIIFCQVG 534
Query: 148 KRSMMAATDLLNAGFAGITDIAGGFAAWR 176
            R  +A   L+N G+    ++ GG+  ++
Sbjct: 535 LRGNVAYRQLVNNGYRA-RNLIGGYRTYK 562

>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein From Saccharomyces Cerevisiae Length = 139

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-RFRKHDEIIVGCQSGKR 149
           +DVR P E+S  H   +INVPY     +     L+F +++   +     E+I  C SGKR
Sbjct: 44  VDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCASGKR 103
Query: 150 SMMAATDLLNAGFAGITDIAGGFAAWRQNG 179
              A     + G++  +   G    W  +G
Sbjct: 104 GGEAQKVASSHGYSNTSLYPGSXNDWVSHG 133

>pdb|2EG4|A Chain A, Crystal Structure Of Probable Thiosulfate Sulfurtransferase Length = 230

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 91  LDVRTPEEFSA----------GHATGAINVPY-MYRVGSGMTKNLKFVEEVSTRFRKHDE 139
           LDVR+PEEF            G   G+ N P  ++    G+ + L          +   E
Sbjct: 135 LDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPEGLLERLGL--------QPGQE 186
Query: 140 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184
           + V C SG RS +A   L + G     +  G    W Q GLPTEP
Sbjct: 187 VGVYCHSGARSAVAFFVLRSLGVRA-RNYLGSMHEWLQEGLPTEP 230

>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase Length = 108

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 75  VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           + V  AH+ LQ     L D+R P+ F+ GHA  A ++     +G+ M  N     +  T 
Sbjct: 7   INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTND-TLGAFMRDN-----DFDT- 59
Query: 134 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
                 ++V    G  S  AA  LL  G+  +  I GGF AW Q   P E
Sbjct: 60  -----PVMVMXYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW-QRQFPAE 103

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 83  LLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK---HDE 139
           +++ G   +DVR P E   G   G+IN+P               ++E+  R  +     +
Sbjct: 499 IVENGGYLIDVREPNELKQGXIKGSINIP---------------LDELRDRLEEVPVDKD 543
Query: 140 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 172
           I + CQ G R  +AA  L   G+  + ++ GGF
Sbjct: 544 IYITCQLGXRGYVAARXLXEKGYK-VKNVDGGF 575

>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur Transferase Homodimer From Wolinella Succinogenes Length = 137

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 78  RVAHELLQAGHR--YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           + A++LLQ       +DVR P+E  A       N  +M R   G  + L       +   
Sbjct: 28  KDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSR---GKLEPLL----AKSGLD 80
Query: 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 182
               ++V C++  R+ +A   L   GF  I +  GG   W + GLP+
Sbjct: 81  PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPS 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
1tq1_A	129	AT5G66040, senescence-associated family protein; C	8e-49
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	4e-29
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	2e-28
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	1e-24
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	2e-23
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	3e-23
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	3e-22
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	1e-21
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	1e-21
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	4e-21
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	4e-21
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	2e-05
1vee_A	134	Proline-rich protein family; hypothetical protein,	5e-21
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	6e-21
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	3e-20
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	7e-20
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	8e-20
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	1e-16
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	1e-11
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	5e-09
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	1e-19
2jtq_A	85	Phage shock protein E; solution structure rhodanes	2e-19
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	3e-19
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	5e-18
3r2u_A	466	Metallo-beta-lactamase family protein; structural	3e-17
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	2e-16
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	5e-15
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	6e-13
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	4e-12
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	5e-11
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	1e-10
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	1e-09
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	2e-09
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	4e-09
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	5e-09
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	6e-07
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	8e-07
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	1e-05
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	2e-05
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	3e-05
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	3e-05
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	7e-05
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	7e-05
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	9e-05
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	9e-05
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	1e-04
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	6e-04
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	8e-04

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score =  153 bits (389), Expect = 8e-49
 Identities = 79/117 (67%), Positives = 93/117 (79%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 126
           E   VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F
Sbjct: 12  EESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDF 71

Query: 127 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
           +E+VS+ F + D IIVGCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct: 72  LEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 128

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score =  103 bits (258), Expect = 4e-29
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           LDVR    ++ GH  GA+ +P               V+  S+   K  +I V     +++
Sbjct: 17  LDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 65

Query: 151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
             A   L +AGF  ++++ GG AAW+  G PTE
Sbjct: 66  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 98

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score =  102 bits (256), Expect = 2e-28
 Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 17/110 (15%)

Query: 80  AHEL---LQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           AH L   L+ G      LDVR    ++ GH  GA+ +P               V+  S+ 
Sbjct: 4   AHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSS 52

Query: 134 FRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
             K  +I V     +++  A   L +AGF  ++++ GG AAW+  G PTE
Sbjct: 53  LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 102

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 92.5 bits (230), Expect = 1e-24
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 80  AHELLQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FR 135
              ++         +DVR P E+S  H   +INVPY     +     L+F +++      
Sbjct: 30  MKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPD 89

Query: 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 182
              E+I  C SGKR   A     + G++  +   G    W  +G   
Sbjct: 90  SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDK 136

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score = 88.1 bits (219), Expect = 2e-23
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 14/111 (12%)

Query: 74  SVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 132
            + V  AH+ LQ     L D+R P+ F+ GHA  A ++               F+ +   
Sbjct: 6   CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLT--------NDTLGAFMRDN-- 55

Query: 133 RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
                  ++V C  G  S  AA  LL  G+  +  I GGF AW++   P E
Sbjct: 56  --DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE 103

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 88.1 bits (219), Expect = 3e-23
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 11/93 (11%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           +DVR  +E+   H   A  +         +    K  + +S    K  ++++ C++G+R+
Sbjct: 20  VDVRELDEYEELHLPNATLIS--------VNDQEKLADFLS--QHKDKKVLLHCRAGRRA 69

Query: 151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
           + AA  +   G+     + G    + + G    
Sbjct: 70  LDAAKSMHELGYTPYY-LEGNVYDFEKYGFRMV 101

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score = 83.8 bits (208), Expect = 1e-21
 Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 80  AHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
           A +L +    Y  LDVR P E   G    +IN+P            +  + E      + 
Sbjct: 8   AADLYENIKAYTVLDVREPFELIFGSIANSINIP------------ISELREKWKILERD 55

Query: 138 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184
            +  V C  G RS  A   L   G   I D+ GG  +W + G P   
Sbjct: 56  KKYAVICAHGNRSAAAVEFLSQLGLN-IVDVEGGIQSWIEEGYPVVL 101

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 84.7 bits (210), Expect = 1e-21
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 18/119 (15%)

Query: 75  VPVRVAHELLQAGHRY---LDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           +    A  L ++G      +D+R P E    G   G+ +         GM   L+F  + 
Sbjct: 24  LTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTR------GM---LEFWIDP 74

Query: 131 STRFRKHD-----EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184
            + + K       + +  C  G RS +AA    + G   +  I GGF AWR  G P E 
Sbjct: 75  QSPYAKPIFQEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEA 133

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score = 82.2 bits (204), Expect = 4e-21
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 15/110 (13%)

Query: 74  SVPVRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
           S+ V    E +   +    +DVRT +E + G   GA  +P M  +   +           
Sbjct: 3   SITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIP-MNSIPDNLNY--------- 52

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 181
             F  ++   + C++G RS      L   G     ++ GG   +   GL 
Sbjct: 53  --FNDNETYYIICKAGGRSAQVVQYLEQNGVN-AVNVEGGMDEFGDEGLE 99

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 88.5 bits (219), Expect = 4e-21
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 12/117 (10%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 126
           +        P  V   L Q G   LDVR  +E++ GH   A ++P            L  
Sbjct: 369 DVASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP------------LSK 416

Query: 127 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
           +        +   + V C++G RS +AA+ L   G   + ++ GG+ AWR  G P E
Sbjct: 417 LAAHIHDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVE 473

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 11/107 (10%)

Query: 78  RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
                  + G   LDVR  + F+  H  G++N+P+             FV          
Sbjct: 277 PERVRAWREGGVVLDVRPADAFAKRHLAGSLNIPWN----------KSFVTWAGWLLPAD 326

Query: 138 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184
             I +       +      L + G   + D     A  R        
Sbjct: 327 RPIHLLAADA-IAPDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVAS 372

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 83.1 bits (205), Expect = 5e-21
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 8/120 (6%)

Query: 73  TSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPY-MYRVGSGMTKNLKFVEE 129
           +S   + A+  L      + LD+R   +F    +     +                F+++
Sbjct: 5   SSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKK 64

Query: 130 VSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF---AAWRQNGLPTEP 184
           +S +F   ++  + +  +    S + A  +   GF     I  G      W  + LP   
Sbjct: 65  LSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIE 124

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 83.2 bits (205), Expect = 6e-21
 Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 23/125 (18%)

Query: 80  AHELLQAG--HRYLDVRTPEEFSAGHATGAINVP----YMYRVGSGMTKNLKFVEEVSTR 133
           A E+L        +DVR   E+         ++     Y+    S  T N  F+ E+  R
Sbjct: 12  AWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDR 71

Query: 134 F-----RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA------------WR 176
                 +    +I  C+SG RS+ AA     AG     ++  GF              WR
Sbjct: 72  IPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWR 131

Query: 177 QNGLP 181
             GLP
Sbjct: 132 AVGLP 136

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 79.5 bits (197), Expect = 3e-20
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 18/106 (16%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
            V       LL+ G   +DVR  +  S      A  VP               +E++   
Sbjct: 3   KVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVP---------------LEKIQKG 47

Query: 134 FRK--HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 177
                   +++ C+ G  S +AA  L   G+     + GG  A  Q
Sbjct: 48  EHGLPRRPLLLVCEKGLLSQVAALYLEAEGY-EAMSLEGGLQALTQ 92

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 80.0 bits (198), Expect = 7e-20
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 15/123 (12%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRY--LDVRTPEEFSAGH---ATGAINVPYMYRVGSGMT 121
            A      +  + A++LLQ       +DVR P+E  A          ++        G  
Sbjct: 17  AAKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSR------GK- 69

Query: 122 KNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 181
             L+ +    +       ++V C++  R+ +A   L   GF  I +  GG   W + GLP
Sbjct: 70  --LEPLLA-KSGLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLP 126

Query: 182 TEP 184
           +  
Sbjct: 127 SLD 129

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 84.8 bits (209), Expect = 8e-20
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 12/108 (11%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           P  +A  L + G R LD      ++  H  GA  V                +++   R  
Sbjct: 381 PTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVL------------RSQLKQALERLG 428

Query: 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
             +  ++ C S   +  A  ++       +  + GG +AW   GLPTE
Sbjct: 429 TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTE 476

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 75.9 bits (186), Expect = 1e-16
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 17/115 (14%)

Query: 73  TSVPVRVAHEL---LQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFV 127
           + + VR  H++   L A      LDVR  + F+  H   A N+P             +  
Sbjct: 4   SQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS-----------RLE 52

Query: 128 EEVSTRF-RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 181
            E+  R  R+   I V       + +AA  L + G++ +  + GG + WR  G  
Sbjct: 53  LEIHARVPRRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGE 107

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 61.7 bits (149), Expect = 1e-11
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC 144
           +A    LD R  +E+      G I+VP          + +  V E++        +IV C
Sbjct: 144 RAEAVILDARRFDEYQTMSIPGGISVPG--------AELVLRVAELAP--DPRTRVIVNC 193

Query: 145 QSGKRSMMAATDLLNAGFA-GITDIAGGFAAWRQNG 179
               RS++    LLNAG    +  +  G   W   G
Sbjct: 194 AGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAG 229

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 53.6 bits (128), Expect = 5e-09
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC 144
                 LDVRTPEE+ AGH  G+ + P     G  + +             +   +++  
Sbjct: 280 DRTTYLLDVRTPEEYEAGHLPGSRSTP-----GGQLVQETD-----HVASVRGARLVLVD 329

Query: 145 QSGKRSMMAATDLLNAGF 162
             G R+ M+A+ L   G+
Sbjct: 330 DDGVRANMSASWLAQMGW 347

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 79.4 bits (196), Expect = 1e-19
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 14/95 (14%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ--SGK 148
           +DVR  E +   H   AI++P             K  E+ + R  K   II  C   +  
Sbjct: 37  VDVRDAEAYKECHIPTAISIPGN-----------KINEDTTKRLSKEKVIITYCWGPACN 85

Query: 149 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
            +  AA      GF  + ++ GG   WR+     E
Sbjct: 86  GATKAAAKFAQLGFR-VKELIGGIEYWRKENGEVE 119

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Length = 85

 Score = 77.2 bits (191), Expect = 2e-19
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-----KHDEII 141
              ++DVR PE++   H  GAIN+P               ++EV  R       K+D + 
Sbjct: 1   AEHWIDVRVPEQYQQEHVQGAINIP---------------LKEVKERIATAVPDKNDTVK 45

Query: 142 VGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 177
           V C +G++S  A   L   G+  + +  GG      
Sbjct: 46  VYCNAGRQSGQAKEILSEMGYTHVENA-GGLKDIAM 80

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 78.2 bits (193), Expect = 3e-19
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 24/114 (21%)

Query: 79  VAHELLQAGHRY--LDVRT-PEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           V  ++  A  +Y  LDVR  P +       GAI +P                ++++TR  
Sbjct: 22  VLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMP---------------AKDLATRIG 66

Query: 136 ---KHDEIIVGCQSGKRSMM--AATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184
                   +V   +G  ++   A   LL+AGF    ++AG    W+   LP E 
Sbjct: 67  ELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLEH 119

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Length = 127

 Score = 75.2 bits (185), Expect = 5e-18
 Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 13/114 (11%)

Query: 77  VRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPY-----MYRVGSGMTKNLKFVEE 129
           V     LL +G  +  LDVR   E        A+++P             + K   + E+
Sbjct: 5   VTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKEAIWEEK 64

Query: 130 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG------ITDIAGGFAAWRQ 177
             T+      I V C+ G  S  A   L +   A       + D+ GG  AW  
Sbjct: 65  QGTQEGAAVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAA 118

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 77.4 bits (190), Expect = 3e-17
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           LDVR   E++ GH + A++VP               + E    F K+D I V CQSG RS
Sbjct: 391 LDVRNDNEWNNGHLSQAVHVP------------HGKLLETDLPFNKNDVIYVHCQSGIRS 438

Query: 151 MMAATDLLNAGFAGITDIAGGFAAWRQN 178
            +A   L + G+  I ++  G+   + +
Sbjct: 439 SIAIGILEHKGYHNIINVNEGYKDIQLS 466

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Length = 134

 Score = 71.3 bits (174), Expect = 2e-16
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 24/125 (19%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMY-----RVGSGMTKN------- 123
            +++   L      ++DVRT  E+   H   AIN+P         VG+            
Sbjct: 6   VIKIEKALKLDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQ 65

Query: 124 --LKFVEEVSTRFRK---------HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF 172
               +V                   + +I   + G RS      L + G   +  + GG+
Sbjct: 66  KGFDYVSYKLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVN-VYQLEGGY 124

Query: 173 AAWRQ 177
            A+R 
Sbjct: 125 KAYRN 129

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score = 67.7 bits (165), Expect = 5e-15
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 18/121 (14%)

Query: 73  TSVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
           + +       L +  +  + DVR  E    GH  G+++        SG   +   +  + 
Sbjct: 28  SYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYA------SGSFDDK--ISHLV 79

Query: 132 TRFRKHDEIIVGC-QSGKRSMMAATDLL--------NAGFAGITDIAGGFAAWRQNGLPT 182
              +  D ++     S  R    A  L+        + G   I  +  GF  W  +G P 
Sbjct: 80  QNVKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPV 139

Query: 183 E 183
            
Sbjct: 140 C 140

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 65.3 bits (160), Expect = 6e-13
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 19/110 (17%)

Query: 70  GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE 129
           G   +V       +++ G   +DVR P E   G   G+IN+P               ++E
Sbjct: 486 GFVDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIP---------------LDE 530

Query: 130 VSTRFR---KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 176
           +  R        +I + CQ G R  +AA  L+  G+  + ++ GGF  + 
Sbjct: 531 LRDRLEEVPVDKDIYITCQLGMRGYVAARMLMEKGYK-VKNVDGGFKLYG 579

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 62.6 bits (153), Expect = 4e-12
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 21/102 (20%)

Query: 80  AHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-- 135
             ++         LDVR P E   G   GA+N+P               V+E+  R    
Sbjct: 477 FDQIDNLSEDQLLLDVRNPGELQNGGLEGAVNIP---------------VDELRDRMHEL 521

Query: 136 -KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 176
            K  EII+  Q G R  +A   L+N G+    ++ GG+  ++
Sbjct: 522 PKDKEIIIFSQVGLRGNVAYRQLVNNGYR-ARNLIGGYRTYK 562

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 57.4 bits (138), Expect = 5e-11
 Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 16/99 (16%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH  GA+N+           ++    + +     K   ++  C+ S +R
Sbjct: 48  IDCRYPYEYEGGHIKGAVNLHM-----EEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSER 102

Query: 150 SMMAATDLLNA----------GFAGITDIAGGFAAWRQN 178
                  +              +  +  + GG+  +   
Sbjct: 103 GPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK 141

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score = 57.0 bits (137), Expect = 1e-10
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 15/99 (15%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH   A+N+P      S + K+      +     K   +I  C+ S +R
Sbjct: 69  VDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLD----KRVILIFHCEFSSER 124

Query: 150 SMMAATDL----------LNAGFAGITDIAGGFAAWRQN 178
                  +           +  +  +  + GG+  +   
Sbjct: 125 GPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ 163

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 54.0 bits (129), Expect = 1e-09
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 91  LDVRTPEEFSAGHATGAINVPY--MYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC-QSG 147
           +DVR   ++  GH     +  Y  + +    + +    + E     R    +I  C  S 
Sbjct: 57  VDVR-GSDYMGGHIKDGWHYAYSRLKQDPEYLRELKHRLLEKQADGRGALNVIFHCMLSQ 115

Query: 148 KRSMMAATDLLNA------GFAGITDIAGGFAAWRQNG 179
           +R   AA  LL +          +  + GGF+ W+   
Sbjct: 116 QRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVY 153

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 52.7 bits (126), Expect = 2e-09
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 18/110 (16%)

Query: 81  HELLQAGHRY-----LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
            ELL           +D R   +   G    +IN+P +        K  K + E      
Sbjct: 13  VELLDNPDSLVKAAVIDCR-DSDRDCGFIVNSINMPTISCTEEMYEKLAKTLFE-----E 66

Query: 136 KHDEIIVGC-QSGKRSMMAATDL------LNAGFAGITDIAGGFAAWRQN 178
           K +  +  C QS  R+   A         L      +  + GG+ A+   
Sbjct: 67  KKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHM 116

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score = 53.2 bits (127), Expect = 4e-09
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 15/99 (15%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH  GA+N+         +         V    +K   I+  C+ S +R
Sbjct: 82  IDCRYPYEYLGGHIQGALNLY----SQEELFNFFLKKPIVPLDTQKRIIIVFHCEFSSER 137

Query: 150 SMMAATDLLNA----------GFAGITDIAGGFAAWRQN 178
                  L              +  +  + GG+  +   
Sbjct: 138 GPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPE 176

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score = 52.3 bits (125), Expect = 5e-09
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 15/99 (15%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH   A+N+P      S + K+            K   +I   + S +R
Sbjct: 49  VDCRYPYEYEGGHIKTAVNLPLERDAESFLLKS----PIAPCSLDKRVILIFHSEFSSER 104

Query: 150 SMMAATDL----------LNAGFAGITDIAGGFAAWRQN 178
                  +           +  +  +  + GG+  +   
Sbjct: 105 GPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ 143

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Length = 271

 Score = 47.2 bits (113), Expect = 6e-07
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 22/122 (18%)

Query: 79  VAHELLQAGHRYLDVRTPEEFS--------AGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           +   L  A     D R+P+E+          GH  GA+N  +   +       L+   ++
Sbjct: 154 LLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRA--LRIRTDI 211

Query: 131 STRF-----RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAW-RQNGLP 181
           + R          EI+  CQ+  R   +    L A   G   +    G +  W      P
Sbjct: 212 AGRLEELGITPDKEIVTHCQTHHR---SGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTP 268

Query: 182 TE 183
            E
Sbjct: 269 VE 270

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A Length = 230

 Score = 46.4 bits (111), Expect = 8e-07
 Identities = 33/137 (24%), Positives = 42/137 (30%), Gaps = 40/137 (29%)

Query: 72  PTSVPVRVAHELL------QAGHRYLDVRTPEEFS----------AGHATGAINVPYMYR 115
            T V  ++  + L            LDVR+PEEF            G   G+ N P    
Sbjct: 110 RTEVVAKLRRDWLLTADEAARHPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLE-- 167

Query: 116 VGSGMTKNLKFVEEVSTRFR-----KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA- 169
                     F+                E+ V C SG R   +A         G+     
Sbjct: 168 ---------LFLSP-EGLLERLGLQPGQEVGVYCHSGAR---SAVAFFVLRSLGV-RARN 213

Query: 170 --GGFAAWRQNGLPTEP 184
             G    W Q GLPTEP
Sbjct: 214 YLGSMHEWLQEGLPTEP 230

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A Length = 318

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 33/148 (22%)

Query: 63  RGNLEAVGVPTSVPVRVAHELLQA--GHRYLDVRTPEEFS----------------AGHA 104
                 V    +       ++L        +DVR+PEE++                AGH 
Sbjct: 166 CTGYPVVQRNDAPIRAFRDDVLAILGAQPLIDVRSPEEYTGKRTHMPDYPEEGALRAGHI 225

Query: 105 TGAINVPYMYRVGSGMTKN--LKFVEEVSTRFR---KHDEIIVGCQSGKRSMMAATDLLN 159
             A+++P+    G    ++   +  EE+   +      D+ +V C+ G+RS  + T  + 
Sbjct: 226 PTAVHIPW----GKAADESGRFRSREELERLYDFINPDDQTVVYCRIGERS--SHTWFVL 279

Query: 160 AGFAGITDIA---GGFAAW-RQNGLPTE 183
               G  D+    G +  W     +P  
Sbjct: 280 THLLGKADVRNYDGSWTEWGNAVRVPIV 307

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2 Length = 280

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 26/126 (20%)

Query: 79  VAHELLQAGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMTKNLKFV 127
           V     +   + +D R    F+            GH  GA+NVP+   V  G  K     
Sbjct: 159 VLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKT---T 215

Query: 128 EEVSTRFRKH-----DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAW-RQN 178
           +E+   F          IIV C SG   + AA  LL      + ++    G ++ W  + 
Sbjct: 216 DELDAIFFGRGVSYDKPIIVSCGSG---VTAAVVLLALATLDVPNVKLYDGAWSEWGARA 272

Query: 179 GLPTEP 184
            LP EP
Sbjct: 273 DLPVEP 278

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2 Length = 285

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 39/154 (25%)

Query: 63  RGNLEAVGVPTSVPV------RVAHELLQAGHRYLDVRTPEEFS---------------- 100
            G  E      S+            ++ +     +DVR+P+E+                 
Sbjct: 134 PGRYEVPYRDESIRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALR 193

Query: 101 AGHATGAINVPYMYRVGSGMTKNLKF--VEEVSTRFR-----KHDEIIVGCQSGKRSMMA 153
           AGH  GA N+P+       +  +  F   EE+   +      K  +I+V C+  +RS  +
Sbjct: 194 AGHIPGAKNIPW----AKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCRIAERS--S 247

Query: 154 ATDLLNAGFAGITDIA---GGFAAW-RQNGLPTE 183
            +  +     G   +    G +  W    G+P  
Sbjct: 248 HSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIA 281

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A Length = 423

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 32/132 (24%)

Query: 79  VAHELLQAGHRYLDVRTPEEFS-----------AGHATGAI-------NVPYMYRVGSGM 120
               L +     + +R+  EF             G   GA        +           
Sbjct: 279 ARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDG 338

Query: 121 TKNLKFVEEVSTRFRKH-----DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGF 172
           T  ++  ++++  ++        ++   C +G R   A+   + A   G  +++   GG+
Sbjct: 339 T--MRSADDITAMWKAWNIKPEQQVSFYCGTGWR---ASETFMYARAMGWKNVSVYDGGW 393

Query: 173 AAW-RQNGLPTE 183
             W      P  
Sbjct: 394 YEWSSDPKNPVA 405

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 40.5 bits (94), Expect = 7e-05
 Identities = 11/122 (9%), Positives = 31/122 (25%), Gaps = 20/122 (16%)

Query: 76  PVRVAHELLQAGHRYL--DVRTPEEFSAGHATGAINVPY-MYRVGSGMTKNLKFVEEVST 132
              +   +       +  D R  +++       +++VP      G   +     + + S 
Sbjct: 19  AKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSK 78

Query: 133 RFRKH----DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA-------------GGFAAW 175
              K     + +++         +     L +    +                 GG+  W
Sbjct: 79  DTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENW 138

Query: 176 RQ 177
             
Sbjct: 139 LL 140

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A Length = 277

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 39/123 (31%)

Query: 91  LDVRTPEEFS----------------AGHATGAINVPYMYRVGSGMTKN--LKFVEEVST 132
           +DVR+P+EFS                 GH  GAINVP+         ++   K  EE++ 
Sbjct: 161 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPW----SRAANEDGTFKSDEELAK 216

Query: 133 RFRKH-----DEIIVGCQSGKRS---MMAATDLLNAGFAGITDIA---GGFAAW-RQNGL 180
            +         E I  C+ G+RS        +LL     G  ++    G +  +    G 
Sbjct: 217 LYADAGLDNSKETIAYCRIGERSSHTWFVLRELL-----GHQNVKNYDGSWTEYGSLVGA 271

Query: 181 PTE 183
           P E
Sbjct: 272 PIE 274

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 40.1 bits (93), Expect = 9e-05
 Identities = 14/118 (11%), Positives = 37/118 (31%), Gaps = 21/118 (17%)

Query: 81  HELLQAGHRY---LDVRTPEEFSAGHATGAINVPY-MYRVGSGMTKNLKFVEEVSTRFRK 136
           + ++   +     +D R  +++       +++VP      G   +     + + S    K
Sbjct: 28  YTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWK 87

Query: 137 H----DEIIVGCQ-SGKRSMMAAT------DLLNAGFAG------ITDIAGGFAAWRQ 177
                + +++    S  + +   T      D L    +          + GG+  W  
Sbjct: 88  KRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLL 145

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A Length = 296

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 25/114 (21%)

Query: 91  LDVRTPEEFS------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH- 137
           +D R    +             +GH  G++N+P+M  +        K  EE+   F    
Sbjct: 179 VDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTE--DGFEKSPEELRAMFEAKK 236

Query: 138 ----DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAWRQNGLPTEP 184
                 +I  C+ G   + A    L A   G  D+A   G +  W     P   
Sbjct: 237 VDLTKPLIATCRKG---VTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETW 287

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A Length = 153

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 18/115 (15%)

Query: 81  HELLQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV------- 130
             LL++G      +D R   E++  H   AIN+     +   + ++   + E+       
Sbjct: 12  VALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKH 71

Query: 131 STRFRKHDEIIVGCQSGKRS-----MMAATDLLNAGFAGITDI---AGGFAAWRQ 177
                   +++V  QS +           T LL         +   AGGFA + +
Sbjct: 72  KVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSR 126

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens} Length = 302

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 24/125 (19%)

Query: 79  VAHELLQAGHRYLDVRTPEEF-----------SAGHATGAINVPYMYRVGSGMTKNLKFV 127
           +   L     + +D R    F             GH  G +N+P+   +        K  
Sbjct: 182 IKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQ--EGLEKSP 239

Query: 128 EEVSTRFRKH-----DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAWRQNG 179
           EE+   F++        ++  C SG   + A    L A   G  D+    G +  W    
Sbjct: 240 EEIRHLFQEKKVDLSKPLVATCGSG---VTACHVALGAYLCGKPDVPIYDGSWVEWYMRA 296

Query: 180 LPTEP 184
            P + 
Sbjct: 297 RPEDV 301

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1 Length = 154

 Score = 37.4 bits (86), Expect = 8e-04
 Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 21/127 (16%)

Query: 72  PTSVPVRVAHELLQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE 128
             S  V   +E L+ G+     +D R  E + + H   AINV     +   + K    V 
Sbjct: 15  AISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVR 74

Query: 129 EV------STRFRK---------HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---G 170
            +        RF +         +DE                 LL              G
Sbjct: 75  ALFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEG 134

Query: 171 GFAAWRQ 177
           GF+ ++ 
Sbjct: 135 GFSKFQA 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.96
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.95
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.95
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.95
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.95
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.94
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.94
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.94
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.93
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.93
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.93
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.92
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.92
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.92
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.91
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.91
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.9
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.9
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.9
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.9
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.9
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.9
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.89
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.89
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.89
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.89
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.89
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.88
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.88
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.88
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.88
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.88
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.87
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.87
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.86
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.86
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.86
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.86
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.86
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.86
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.85
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.85
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.85
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.84
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.84
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.84
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.84
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.84
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.83
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.83
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.83
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.82
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.8
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.79
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.79
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.79
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.76
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.75
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.74
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.72
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.72
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.72
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.71
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.42
2f46_A	156	Hypothetical protein; structural genomics, joint c	98.26
4erc_A	150	Dual specificity protein phosphatase 23; alpha bet	95.92
2img_A	151	Dual specificity protein phosphatase 23; DUSP23, V	95.09
1v8c_A	168	MOAD related protein; riken structural genomics/pr	94.09
2nt2_A	145	Protein phosphatase slingshot homolog 2; alpha/bet	93.97
1xri_A	151	AT1G05000; structural genomics, protein structure	93.85
1fpz_A	212	Cyclin-dependent kinase inhibitor 3; alpha-beta sa	93.45
2hcm_A	164	Dual specificity protein phosphatase; structural g	93.41
1yz4_A	160	DUSP15, dual specificity phosphatase-like 15 isofo	92.91
1ywf_A	296	Phosphotyrosine protein phosphatase PTPB; four str	92.65
3ezz_A	144	Dual specificity protein phosphatase 4; alpha/beta	92.64
1wrm_A	165	Dual specificity phosphatase 22; DSP, JNK, hydrola	92.14
2r0b_A	154	Serine/threonine/tyrosine-interacting protein; str	92.14
2wgp_A	190	Dual specificity protein phosphatase 14; MKP6, DUS	91.59
3rgo_A	157	Protein-tyrosine phosphatase mitochondrial 1; phos	91.49
3f81_A	183	Dual specificity protein phosphatase 3; hydrolase,	90.7
2esb_A	188	Dual specificity protein phosphatase 18; alpha/bet	90.67
3s4e_A	144	Dual specificity protein phosphatase 19; PTP, prot	90.33
2g6z_A	211	Dual specificity protein phosphatase 5; alpha/beta	90.02
2y96_A	219	Dual specificity phosphatase DUPD1; hydrolase; 2.3	87.79
2pq5_A	205	Dual specificity protein phosphatase 13; hydrolase	87.57
3s4o_A	167	Protein tyrosine phosphatase-like protein; structu	86.9
3emu_A	161	Leucine rich repeat and phosphatase domain contain	86.55
3cm3_A	176	Late protein H1, dual specificity protein phosphat	85.12
2i6j_A	161	Ssoptp, sulfolobus solfataricus protein tyrosine p	83.82
3rz2_A	189	Protein tyrosine phosphatase type IVA 1; tyrosine	83.65
2jgn_A	185	DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp	83.54
2q05_A	195	Late protein H1, dual specificity protein phosphat	83.18
2j16_A	182	SDP-1, tyrosine-protein phosphatase YIL113W; hydro	81.27

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.96  E-value=8.2e-29  Score=176.61  Aligned_cols=116  Identities=67%  Similarity=1.111  Sum_probs=102.1

Q ss_pred             CCCCcccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCCh
Q 029984           69 VGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (184)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~  148 (184)
                      ......++++++.++++++++|||||++.||..||||||+|||+..+...+.+.+.++++.....++++++|||||.+|.
T Consensus        14 ~~~~~~is~~e~~~~l~~~~~lIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~~G~   93 (129)
T 1tq1_A           14 SRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGG   93 (129)
T ss_dssp             SCCCEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCS
T ss_pred             cCCCcccCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECCCCc
Confidence            44556789999999888778999999999999999999999998655555555666778887777889999999999999


Q ss_pred             hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          149 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       149 rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      ||..+++.|.+.||+||++|+|||.+|..+|+|+++
T Consensus        94 rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  129 (129)
T 1tq1_A           94 RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA  129 (129)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC-
T ss_pred             HHHHHHHHHHHcCCCCeEEeCCcHHHHHhCCCCCCC
Confidence            999999999999999999999999999999999874

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.95  E-value=4.5e-29  Score=171.40  Aligned_cols=99  Identities=25%  Similarity=0.409  Sum_probs=87.0

Q ss_pred             cccCHHHHHHHHhCC--CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhH
Q 029984           73 TSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (184)
Q Consensus        73 ~~i~~~~~~~~~~~~--~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs  150 (184)
                      ..++++++++.+.++  ++|||||++.||..||||||+|||++            .+......++++++||+||.+|.||
T Consensus         2 k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~ivv~C~~G~rS   69 (103)
T 3iwh_A            2 KSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMD------------TIPDNLNSFNKNEIYYIVCAGGVRS   69 (103)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGG------------GGGGCGGGCCTTSEEEEECSSSSHH
T ss_pred             CCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcccCccc------------chhhhhhhhcCCCeEEEECCCCHHH
Confidence            357889998877543  88999999999999999999999984            3444556789999999999999999


Q ss_pred             HHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       151 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      ..++..|.+.||+++ .|.||+.+|+.+|+|+++
T Consensus        70 ~~aa~~L~~~G~~~~-~l~GG~~~W~~~g~pves  102 (103)
T 3iwh_A           70 AKVVEYLEANGIDAV-NVEGGMHAWGDEGLEIKS  102 (103)
T ss_dssp             HHHHHHHHTTTCEEE-EETTHHHHHCSSSCBCCC
T ss_pred             HHHHHHHHHcCCCEE-EecChHHHHHHCCCccee
Confidence            999999999999755 689999999999999985

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.95  E-value=1.4e-27  Score=165.28  Aligned_cols=98  Identities=30%  Similarity=0.448  Sum_probs=90.5

Q ss_pred             cccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHH
Q 029984           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (184)
Q Consensus        73 ~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~  152 (184)
                      ..++++++.+++++ ++|||||++.||..||||||+|||+            +.+......++++++||+||.+|.||..
T Consensus         4 ~~is~~el~~~l~~-~~iiDvR~~~e~~~ghIpgA~~ip~------------~~l~~~~~~l~~~~~ivvyC~~G~rs~~   70 (108)
T 3gk5_A            4 RSINAADLYENIKA-YTVLDVREPFELIFGSIANSINIPI------------SELREKWKILERDKKYAVICAHGNRSAA   70 (108)
T ss_dssp             CEECHHHHHHTTTT-CEEEECSCHHHHTTCBCTTCEECCH------------HHHHHHGGGSCTTSCEEEECSSSHHHHH
T ss_pred             cEeCHHHHHHHHcC-CEEEECCCHHHHhcCcCCCCEEcCH------------HHHHHHHHhCCCCCeEEEEcCCCcHHHH
Confidence            46888999988877 9999999999999999999999998            5667777888999999999999999999


Q ss_pred             HHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          153 AATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       153 ~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      +++.|++.|| +|++|+||+.+|.++|.|+++
T Consensus        71 aa~~L~~~G~-~v~~l~GG~~~W~~~~~~~~~  101 (108)
T 3gk5_A           71 AVEFLSQLGL-NIVDVEGGIQSWIEEGYPVVL  101 (108)
T ss_dssp             HHHHHHTTTC-CEEEETTHHHHHHHTTCCCBC
T ss_pred             HHHHHHHcCC-CEEEEcCcHHHHHHcCCCCCC
Confidence            9999999999 999999999999999999864

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.95  E-value=4.4e-28  Score=165.42  Aligned_cols=97  Identities=24%  Similarity=0.389  Sum_probs=86.4

Q ss_pred             cccCHHHHHHHHh--CCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhH
Q 029984           73 TSVPVRVAHELLQ--AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (184)
Q Consensus        73 ~~i~~~~~~~~~~--~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs  150 (184)
                      +.++++++.+++.  ++++|||||++.||..||||||+|+|+.            .+......++++++||+||.+|.||
T Consensus         2 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~ivvyC~~g~rs   69 (100)
T 3foj_A            2 ESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMN------------SIPDNLNYFNDNETYYIICKAGGRS   69 (100)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGG------------GGGGCGGGSCTTSEEEEECSSSHHH
T ss_pred             CccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHH------------HHHHHHHhCCCCCcEEEEcCCCchH
Confidence            3578899998874  3589999999999999999999999984            3444556678999999999999999


Q ss_pred             HHHHHHHHHccCCCeeeccccHHHHHhCCCCC
Q 029984          151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPT  182 (184)
Q Consensus       151 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~  182 (184)
                      ..+++.|++.|| +|++|+||+.+|.++|+|+
T Consensus        70 ~~a~~~L~~~G~-~v~~l~GG~~~W~~~g~pv  100 (100)
T 3foj_A           70 AQVVQYLEQNGV-NAVNVEGGMDEFGDEGLEH  100 (100)
T ss_dssp             HHHHHHHHTTTC-EEEEETTHHHHHCSSSCBC
T ss_pred             HHHHHHHHHCCC-CEEEecccHHHHHHcCCCC
Confidence            999999999999 8999999999999999986

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.94  E-value=7.2e-27  Score=161.48  Aligned_cols=99  Identities=30%  Similarity=0.500  Sum_probs=88.5

Q ss_pred             CcccCHHHHHHHHhC-CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhH
Q 029984           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs  150 (184)
                      ...++++++.+++++ +.+|||||++.||..||||||+|||+            ..+......++++++|||||.+|.||
T Consensus         4 ~~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~------------~~l~~~~~~l~~~~~ivvyc~~g~rs   71 (108)
T 1gmx_A            4 FECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTN------------DTLGAFMRDNDFDTPVMVMCYHGNSS   71 (108)
T ss_dssp             CEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCH------------HHHHHHHHHSCTTSCEEEECSSSSHH
T ss_pred             ccccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEeCCH------------HHHHHHHHhcCCCCCEEEEcCCCchH
Confidence            346888999888875 48999999999999999999999998            45555566689999999999999999


Q ss_pred             HHHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       151 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      ..+++.|.+.||++|++|+||+.+|.++ +|++
T Consensus        72 ~~a~~~L~~~G~~~v~~l~GG~~~W~~~-~p~~  103 (108)
T 1gmx_A           72 KGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE  103 (108)
T ss_dssp             HHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGG
T ss_pred             HHHHHHHHHcCCceEEEecCCHHHHHHh-CCcc
Confidence            9999999999999999999999999998 8875

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.94  E-value=5.5e-27  Score=161.66  Aligned_cols=94  Identities=32%  Similarity=0.554  Sum_probs=78.3

Q ss_pred             HHHHHHh---CCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHH
Q 029984           79 VAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAAT  155 (184)
Q Consensus        79 ~~~~~~~---~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~  155 (184)
                      +++++++   ++++|||||++.||..||||||+|||+.           ++.......++++++|||||.+|.||..+++
T Consensus         2 el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~-----------~l~~~~~~~l~~~~~ivvyc~~g~rs~~a~~   70 (106)
T 3hix_A            2 VLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQTSQAVN   70 (106)
T ss_dssp             -----------CCEEEECSCHHHHHTCEETTCEECCGG-----------GHHHHHHHHSCTTSCEEEECSSHHHHHHHHH
T ss_pred             hHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCEeCCHH-----------HHHHHHHhcCCCCCeEEEEECCCChHHHHHH
Confidence            3455554   3489999999999999999999999994           3444445678899999999999999999999


Q ss_pred             HHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          156 DLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       156 ~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      .|+..||+||++|+||+.+|+++|+|++
T Consensus        71 ~L~~~G~~~v~~l~GG~~~W~~~g~~~~   98 (106)
T 3hix_A           71 LLRSAGFEHVSELKGGLAAWKAIGGPTE   98 (106)
T ss_dssp             HHHHTTCSCEEECTTHHHHHHHTTCCEE
T ss_pred             HHHHcCCcCEEEecCCHHHHHHCCCCCC
Confidence            9999999999999999999999999975

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3e-26  Score=165.09  Aligned_cols=115  Identities=23%  Similarity=0.308  Sum_probs=95.8

Q ss_pred             CCCCcccCHHHHHHHHh---CCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHh--cCCCCCeEEEE
Q 029984           69 VGVPTSVPVRVAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEIIVG  143 (184)
Q Consensus        69 ~~~~~~i~~~~~~~~~~---~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~--~l~~~~~ivv~  143 (184)
                      ......++++++.++++   ++++|||||++.||..||||||+|||+..+ ......+++.+...+.  .++++++||||
T Consensus        19 ~~~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ivvy   97 (139)
T 3d1p_A           19 VSNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSH-PDAFALDPLEFEKQIGIPKPDSAKELIFY   97 (139)
T ss_dssp             -CCCEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCEECCTTTC-TTGGGSCHHHHHHHHSSCCCCTTSEEEEE
T ss_pred             CCCcceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHHh-hhhccCCHHHHHHHHhccCCCCCCeEEEE
Confidence            34556799999999886   458899999999999999999999998654 2333344555555554  35789999999


Q ss_pred             cCCChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          144 CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       144 c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      |.+|.||..++..|.+.||++|++|+||+.+|..+|+|+.+
T Consensus        98 C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  138 (139)
T 3d1p_A           98 CASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLD  138 (139)
T ss_dssp             CSSSHHHHHHHHHHHTTTCCSEEECTTHHHHHHHTTGGGCC
T ss_pred             CCCCchHHHHHHHHHHcCCCCeEEeCCcHHHHHHcCCCCCC
Confidence            99999999999999999999999999999999999999864

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.93  E-value=2.2e-26  Score=166.52  Aligned_cols=98  Identities=31%  Similarity=0.514  Sum_probs=87.3

Q ss_pred             cCHHHHHHHHhC---CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHH
Q 029984           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (184)
Q Consensus        75 i~~~~~~~~~~~---~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~  151 (184)
                      |+++++.+++++   +++|||||++.||..||||||+|||+.           ++.......++++++|||||.+|.||.
T Consensus         2 Is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~-----------~l~~~~~~~l~~~~~ivvyC~~g~rs~   70 (141)
T 3ilm_A            2 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQTS   70 (141)
T ss_dssp             CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCEECCGG-----------GHHHHHHTTSCTTSEEEEECSSHHHHH
T ss_pred             CCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCEEcCHH-----------HHHHHHHhcCCCCCeEEEEECCChHHH
Confidence            678889888863   478999999999999999999999994           333444467889999999999999999


Q ss_pred             HHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          152 MAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       152 ~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      .+++.|...||++|++|+||+.+|.++|+|++
T Consensus        71 ~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  102 (141)
T 3ilm_A           71 QAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE  102 (141)
T ss_dssp             HHHHHHHHTTCCSEEECTTHHHHHHHTTCCEE
T ss_pred             HHHHHHHHcCCCCEEEecCHHHHHHHCCCCcc
Confidence            99999999999999999999999999999985

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.93  E-value=6.5e-26  Score=163.18  Aligned_cols=103  Identities=27%  Similarity=0.459  Sum_probs=88.1

Q ss_pred             CCCcccCHHHHHHHHh--C-CCeEEEcCChhhHhc-CCCCCcEEeccccccCCCCCCCHHHHHHHH--------hcCCCC
Q 029984           70 GVPTSVPVRVAHELLQ--A-GHRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVS--------TRFRKH  137 (184)
Q Consensus        70 ~~~~~i~~~~~~~~~~--~-~~~liDvR~~~e~~~-ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~--------~~l~~~  137 (184)
                      .....++++++.++++  + +++|||||++.||.. ||||||+|||+..            +....        ..++++
T Consensus        19 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~~ip~~~------------l~~~~~~~~~~~~~~~~~~   86 (139)
T 2hhg_A           19 SSIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGM------------LEFWIDPQSPYAKPIFQED   86 (139)
T ss_dssp             TTSEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCEECCGGG------------HHHHHCTTSTTCCGGGGSS
T ss_pred             HhcCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeEECChHH------------HHHhcCccchhhhccCCCC
Confidence            3456789999999887  3 488999999999998 9999999999842            22211        235789


Q ss_pred             CeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          138 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       138 ~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      ++|||||.+|.||..+++.|++.||+||++|+||+.+|..+|+|+++
T Consensus        87 ~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  133 (139)
T 2hhg_A           87 KKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEA  133 (139)
T ss_dssp             SEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHHHHHTTCCCC-
T ss_pred             CeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCCeec
Confidence            99999999999999999999999999999999999999999999863

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.93  E-value=4.3e-26  Score=164.16  Aligned_cols=104  Identities=24%  Similarity=0.380  Sum_probs=89.5

Q ss_pred             CCcccCHHHHHHHHh-C-CCeEEEcCChhhHhc-CC--CCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcC
Q 029984           71 VPTSVPVRVAHELLQ-A-GHRYLDVRTPEEFSA-GH--ATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ  145 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~-~-~~~liDvR~~~e~~~-gh--IpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~  145 (184)
                      ....++++++.++++ + +++|||||++.||.. ||  ||||+|||+..+.        +  ......++++++|||||.
T Consensus        21 ~~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~--------~--~~~~~~l~~~~~ivvyC~   90 (137)
T 1qxn_A           21 DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLE--------P--LLAKSGLDPEKPVVVFCK   90 (137)
T ss_dssp             SSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSH--------H--HHHHHCCCTTSCEEEECC
T ss_pred             cCcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhh--------h--HHhhccCCCCCeEEEEcC
Confidence            455789999998887 4 489999999999999 99  9999999984210        1  113456789999999999


Q ss_pred             CChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          146 SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       146 ~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      +|.||..+++.|++.||+||++|+||+.+|.++|+|+++
T Consensus        91 ~G~rS~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  129 (137)
T 1qxn_A           91 TAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLD  129 (137)
T ss_dssp             SSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEEC
T ss_pred             CCcHHHHHHHHHHHcCCcceEEEcCcHHHHHHCCCCccc
Confidence            999999999999999999999999999999999999863

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.92  E-value=2.5e-26  Score=155.00  Aligned_cols=92  Identities=24%  Similarity=0.304  Sum_probs=76.0

Q ss_pred             ccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHH
Q 029984           74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMA  153 (184)
Q Consensus        74 ~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~  153 (184)
                      .++++++.++++++.+|||||++.||..||||||+|+|+.            .+......+++ ++||+||.+|.||..+
T Consensus         3 ~is~~~l~~~~~~~~~liDvR~~~e~~~ghi~gAi~ip~~------------~l~~~~~~l~~-~~ivvyC~~g~rs~~a   69 (94)
T 1wv9_A            3 KVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVPLE------------KIQKGEHGLPR-RPLLLVCEKGLLSQVA   69 (94)
T ss_dssp             EECGGGHHHHHHTTCEEEECCCC--CCSCCSSCCEECCHH------------HHTTTCCCCCS-SCEEEECSSSHHHHHH
T ss_pred             cCCHHHHHHHHHCCCEEEECCCHHHHhcccCCCCEECCHH------------HHHHHHHhCCC-CCEEEEcCCCChHHHH
Confidence            4677788888877899999999999999999999999983            34444556778 9999999999999999


Q ss_pred             HHHHHHccCCCeeeccccHHHHHhCC
Q 029984          154 ATDLLNAGFAGITDIAGGFAAWRQNG  179 (184)
Q Consensus       154 ~~~L~~~G~~~v~~l~GG~~~W~~~g  179 (184)
                      ++.|.+.||+ |++|+||+.+|.++|
T Consensus        70 ~~~L~~~G~~-v~~l~GG~~~W~~~G   94 (94)
T 1wv9_A           70 ALYLEAEGYE-AMSLEGGLQALTQGK   94 (94)
T ss_dssp             HHHHHHHTCC-EEEETTGGGCC----
T ss_pred             HHHHHHcCCc-EEEEcccHHHHHhCc
Confidence            9999999998 999999999998876

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.92  E-value=1.5e-25  Score=158.62  Aligned_cols=99  Identities=24%  Similarity=0.288  Sum_probs=88.4

Q ss_pred             cccCHHHHHHHHhC---CCeEEEcCChhhH-hcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCCh
Q 029984           73 TSVPVRVAHELLQA---GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (184)
Q Consensus        73 ~~i~~~~~~~~~~~---~~~liDvR~~~e~-~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~  148 (184)
                      ..++++++.+++++   +++|||||++.|| ..||||||+|||+            +.+......++++++|||||.+|.
T Consensus        15 ~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~nip~------------~~l~~~~~~l~~~~~ivvyC~~g~   82 (124)
T 3flh_A           15 LYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPA------------KDLATRIGELDPAKTYVVYDWTGG   82 (124)
T ss_dssp             TEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCEECCH------------HHHHHHGGGSCTTSEEEEECSSSS
T ss_pred             ceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCEECCH------------HHHHHHHhcCCCCCeEEEEeCCCC
Confidence            45788899888764   3789999999998 9999999999998            566677778899999999999999


Q ss_pred             h--HHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          149 R--SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       149 r--s~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      +  |..+++.|++.||+ |++|+||+.+|+.+|+|+.+
T Consensus        83 r~~s~~a~~~L~~~G~~-v~~l~GG~~~W~~~~~p~~~  119 (124)
T 3flh_A           83 TTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLEH  119 (124)
T ss_dssp             CSHHHHHHHHHHHHTCE-EEEETTHHHHHHHTTCCEEC
T ss_pred             chHHHHHHHHHHHcCCe-EEEeCCcHHHHHHcCCCCCc
Confidence            8  89999999999997 99999999999999999753

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.92  E-value=2e-25  Score=161.90  Aligned_cols=100  Identities=24%  Similarity=0.366  Sum_probs=85.9

Q ss_pred             cccCHHHHHHHHhC---CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCC--
Q 029984           73 TSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG--  147 (184)
Q Consensus        73 ~~i~~~~~~~~~~~---~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g--  147 (184)
                      ..++++++.+++.+   +++|||||++.||..||||||+|||+..+.           ......++++++|||||.+|  
T Consensus        16 ~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~-----------~~~~~~l~~~~~ivvyC~~g~~   84 (144)
T 3nhv_A           16 YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKIN-----------EDTTKRLSKEKVIITYCWGPAC   84 (144)
T ss_dssp             TEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCEECCGGGCS-----------TTTTTTCCTTSEEEEECSCTTC
T ss_pred             cccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCEECCHHHHh-----------HHHHhhCCCCCeEEEEECCCCc
Confidence            34788899988875   378999999999999999999999985321           12344578899999999998  


Q ss_pred             hhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          148 KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       148 ~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      .+|..+++.|+..|| +|++|+||+.+|.++|+|+++
T Consensus        85 ~rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~g~pv~~  120 (144)
T 3nhv_A           85 NGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEVEG  120 (144)
T ss_dssp             CHHHHHHHHHHHTTC-EEEEEESHHHHHHHTTCCCBS
T ss_pred             cHHHHHHHHHHHCCC-eEEEeCCcHHHHHHCCCCccC
Confidence            699999999999999 599999999999999999863

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.91  E-value=3.5e-25  Score=153.58  Aligned_cols=87  Identities=18%  Similarity=0.319  Sum_probs=76.4

Q ss_pred             hCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHccC
Q 029984           85 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLLNAGF  162 (184)
Q Consensus        85 ~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~  162 (184)
                      .++++|||||++.||..||||||+|||+.            .+.....  .++++++|||||.+|.||..+++.|++.||
T Consensus        14 ~~~~~liDvR~~~e~~~ghIpgAi~ip~~------------~l~~~~~~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~   81 (110)
T 2k0z_A           14 FNDFIVVDVRELDEYEELHLPNATLISVN------------DQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHELGY   81 (110)
T ss_dssp             GGGSEEEEEECHHHHHHSBCTTEEEEETT------------CHHHHHHHHHSCSSSCEEEECSSSHHHHHHHHHHHHTTC
T ss_pred             cCCeEEEECCCHHHHhcCcCCCCEEcCHH------------HHHHHHHhcccCCCCEEEEEeCCCchHHHHHHHHHHCCC
Confidence            45689999999999999999999999984            2222232  378899999999999999999999999999


Q ss_pred             CCeeeccccHHHHHhCCCCCCC
Q 029984          163 AGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       163 ~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      ++ ++|+||+.+|.++|+|+++
T Consensus        82 ~~-~~l~GG~~~W~~~g~p~~~  102 (110)
T 2k0z_A           82 TP-YYLEGNVYDFEKYGFRMVY  102 (110)
T ss_dssp             CC-EEEESCGGGTTTTTCCCBC
T ss_pred             CE-EEecCCHHHHHHCCCcEec
Confidence            99 9999999999999999863

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.91  E-value=3.6e-24  Score=170.74  Aligned_cols=140  Identities=21%  Similarity=0.341  Sum_probs=102.8

Q ss_pred             eeeecCCCccccccccc-cCcccc---------cCCCCcccCHHHHHHHHh-CCCeEEEcCChhhH-----------hcC
Q 029984           45 NIGFISSKILSFCPKAS-LRGNLE---------AVGVPTSVPVRVAHELLQ-AGHRYLDVRTPEEF-----------SAG  102 (184)
Q Consensus        45 ~~~~l~~~~~~~~~~~~-~~~~~~---------~~~~~~~i~~~~~~~~~~-~~~~liDvR~~~e~-----------~~g  102 (184)
                      .+..++|++..|..... ......         .......++.+++.+++. ++++|||||++.||           ..|
T Consensus       114 ~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~g  193 (280)
T 1urh_A          114 KVSILGGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRG  193 (280)
T ss_dssp             CEEEETTHHHHHHHTTCCCBBSCCCCCCCCCCCCCCGGGBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSS
T ss_pred             CEEEecCCHHHHHHCCCcccCCCCCCCCCccccccCcccEEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCCCCCcCc
Confidence            46889999999975221 111000         001123588999988876 45899999999999           689


Q ss_pred             CCCCcEEeccccccCCCCCCCHHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHh-CC
Q 029984          103 HATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-NG  179 (184)
Q Consensus       103 hIpgAi~ip~~~~~~~~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~-~g  179 (184)
                      |||||+|||+..+...+.+.+.+.+...+.  .++++++||+||.+|.||..++..|..+||+||++|+|||.+|.. .|
T Consensus       194 hIpgA~nip~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~  273 (280)
T 1urh_A          194 HIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARAD  273 (280)
T ss_dssp             SCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC------
T ss_pred             cCCCceEeeHHHhhcCCccCCHHHHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHHhcCCC
Confidence            999999999976665566667777777665  468899999999999999999999999999999999999999987 49


Q ss_pred             CCCCC
Q 029984          180 LPTEP  184 (184)
Q Consensus       180 ~p~~~  184 (184)
                      +|+++
T Consensus       274 ~Pv~~  278 (280)
T 1urh_A          274 LPVEP  278 (280)
T ss_dssp             -----
T ss_pred             CCcee
Confidence            99874

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.90  E-value=6.6e-24  Score=168.38  Aligned_cols=139  Identities=18%  Similarity=0.327  Sum_probs=106.2

Q ss_pred             eeeecCCCccccccccc-cCccc-c--------cCCCCcccCHHHHHHHHhCC-CeEEEcCChhhHh--------cCCCC
Q 029984           45 NIGFISSKILSFCPKAS-LRGNL-E--------AVGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFS--------AGHAT  105 (184)
Q Consensus        45 ~~~~l~~~~~~~~~~~~-~~~~~-~--------~~~~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~--------~ghIp  105 (184)
                      .+..+.|++..|..... ..... .        .......++.+++.++++++ .+|||||++.||.        .||||
T Consensus       109 ~v~~L~GG~~~w~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~~~ghIp  188 (271)
T 1e0c_A          109 RYHYLNGGLTAWLAEDRPLSRELPAPAGGPVALSLHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIP  188 (271)
T ss_dssp             CEEEETTHHHHHHHTTCCCBCCCCCCCCSCCCCCCCSTTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCT
T ss_pred             CeEEecCCHHHHHHcCCCccCCCCCCCCCCccccCCccccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCCcCCcCC
Confidence            35688999999975221 11100 0        01112357889998887654 8899999999999        99999


Q ss_pred             CcEEeccccccCC--CCCCCHHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhC-CC
Q 029984          106 GAINVPYMYRVGS--GMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-GL  180 (184)
Q Consensus       106 gAi~ip~~~~~~~--~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~-g~  180 (184)
                      ||+|||+..+...  ..... +.++..+.  .++++++||+||.+|.||..++..|...||++|++|+|||.+|..+ |+
T Consensus       189 gA~~ip~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~~  267 (271)
T 1e0c_A          189 GAVNFEWTAAMDPSRALRIR-TDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDT  267 (271)
T ss_dssp             TCEECCGGGGEEGGGTTEEC-TTHHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTC
T ss_pred             CceeccHHHhCCCCCCCCCH-HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCC
Confidence            9999999755422  22222 45555555  5789999999999999999999999999999999999999999998 99


Q ss_pred             CCCC
Q 029984          181 PTEP  184 (184)
Q Consensus       181 p~~~  184 (184)
                      |+++
T Consensus       268 pv~~  271 (271)
T 1e0c_A          268 PVEL  271 (271)
T ss_dssp             CCBC
T ss_pred             CCcC
Confidence            9975

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.90  E-value=9.4e-24  Score=169.70  Aligned_cols=139  Identities=14%  Similarity=0.268  Sum_probs=109.1

Q ss_pred             eeeecCCCccccccccc-cCccc-c--------cCCCCcccCHHHHHHHHh-CCCeEEEcCChhhH------------hc
Q 029984           45 NIGFISSKILSFCPKAS-LRGNL-E--------AVGVPTSVPVRVAHELLQ-AGHRYLDVRTPEEF------------SA  101 (184)
Q Consensus        45 ~~~~l~~~~~~~~~~~~-~~~~~-~--------~~~~~~~i~~~~~~~~~~-~~~~liDvR~~~e~------------~~  101 (184)
                      .+..+.|++..|..... ..... .        .......++.+++.++++ ++.+|||||++.||            ..
T Consensus       122 ~V~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~~  201 (296)
T 1rhs_A          122 TVSVLNGGFRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDS  201 (296)
T ss_dssp             CEEEETTHHHHHHHTTCCCBCSCCCCCCCCCCCCCCGGGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCC
T ss_pred             cEEEcCCCHHHHHHcCCccccCCCCCCCCCcccCCCcceEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcccCCCcC
Confidence            45688999999975221 11110 0        001124678899888775 45899999999999            78


Q ss_pred             CCCCCcEEeccccccC-CCCCCCHHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHh-
Q 029984          102 GHATGAINVPYMYRVG-SGMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-  177 (184)
Q Consensus       102 ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~-  177 (184)
                      ||||||+|||+.++.. .+.+.+.+.+...+.  .++++++||+||.+|.||..++..|..+||++|++|+|||.+|.. 
T Consensus       202 ghIpgA~nip~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~  281 (296)
T 1rhs_A          202 GHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHR  281 (296)
T ss_dssp             CEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHH
T ss_pred             ccCCCCEeecHHHhcCCCCcCCCHHHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHHHhcC
Confidence            9999999999976653 355667777777665  368899999999999999999999999999999999999999988 


Q ss_pred             CCCCCC
Q 029984          178 NGLPTE  183 (184)
Q Consensus       178 ~g~p~~  183 (184)
                      .|+|++
T Consensus       282 ~~~pv~  287 (296)
T 1rhs_A          282 APPETW  287 (296)
T ss_dssp             SCGGGE
T ss_pred             CCCCcc
Confidence            799885

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.90  E-value=4.3e-24  Score=155.47  Aligned_cols=110  Identities=28%  Similarity=0.440  Sum_probs=85.9

Q ss_pred             CcccCHHHHHHHHh--CCCeEEEcCChhhHhc-CCC------CCcEEeccccccCCCCCCCHHHHHHHHhc-----CCCC
Q 029984           72 PTSVPVRVAHELLQ--AGHRYLDVRTPEEFSA-GHA------TGAINVPYMYRVGSGMTKNLKFVEEVSTR-----FRKH  137 (184)
Q Consensus        72 ~~~i~~~~~~~~~~--~~~~liDvR~~~e~~~-ghI------pgAi~ip~~~~~~~~~~~~~~~~~~~~~~-----l~~~  137 (184)
                      ...++++++.++++  ++++|||||++.||.. |||      |||+|||+.. .. .. ..+++.+.+...     ++++
T Consensus         4 ~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~-~~-~~-~~~~~~~~l~~~l~~~~~~~~   80 (148)
T 2fsx_A            4 AGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWAT-SD-GT-HNDNFLAELRDRIPADADQHE   80 (148)
T ss_dssp             SEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBC-TT-SC-BCTTHHHHHHHHCC-------
T ss_pred             cccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeec-cc-cc-cCHHHHHHHHHHHhhccCCCC
Confidence            44688899998876  3689999999999997 999      9999999964 11 11 122233333332     4788


Q ss_pred             CeEEEEcCCChhHHHHHHHHHHccCCCeeeccccH------------HHHHhCCCCCCC
Q 029984          138 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGF------------AAWRQNGLPTEP  184 (184)
Q Consensus       138 ~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~------------~~W~~~g~p~~~  184 (184)
                      ++|||||++|.||..+++.|.+.||++|++|+||+            .+|+++|+|+++
T Consensus        81 ~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~w~~~~g~~~~~~W~~~glp~~~  139 (148)
T 2fsx_A           81 RPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWRAVGLPWRQ  139 (148)
T ss_dssp             CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTTCCCCTTSCCCSSSTTTTTCSEEC
T ss_pred             CEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChhhhhhhccccccccHHHcCCCCCc
Confidence            99999999999999999999999999999999999            789999999863

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.90  E-value=2.2e-23  Score=169.28  Aligned_cols=139  Identities=20%  Similarity=0.324  Sum_probs=111.7

Q ss_pred             eeeecCCCccccccccc-cCcc-cc-------c---CCCCcccCHHHHHHHHhCCCeEEEcCChhhHhc-----------
Q 029984           45 NIGFISSKILSFCPKAS-LRGN-LE-------A---VGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSA-----------  101 (184)
Q Consensus        45 ~~~~l~~~~~~~~~~~~-~~~~-~~-------~---~~~~~~i~~~~~~~~~~~~~~liDvR~~~e~~~-----------  101 (184)
                      .+..++|++..|..... .... ..       .   ......++.+++.++++++ +|||||++.||..           
T Consensus       139 ~V~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~l~~~-~liDvR~~~e~~~~~~~~~~~~~~  217 (318)
T 3hzu_A          139 DVRLLNGGRDLWLAERRETTLDVPTKTCTGYPVVQRNDAPIRAFRDDVLAILGAQ-PLIDVRSPEEYTGKRTHMPDYPEE  217 (318)
T ss_dssp             CEEEETTHHHHHHHTTCCCBCCCCCCCCCCCCCCCCCCTTTBCCHHHHHHHTTTS-CEEECSCHHHHHTSCSSCTTSCSC
T ss_pred             ceEEccCCHHHHhhcCCCcccCCCCCCCCccccccCCCccccccHHHHHHhhcCC-eEEecCCHHHhcccccCccccccc
Confidence            45789999999986321 1110 00       0   1112346889999888776 8999999999998           


Q ss_pred             -----CCCCCcEEecccccc-CCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHH-ccCCCeeeccccHHH
Q 029984          102 -----GHATGAINVPYMYRV-GSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-AGFAGITDIAGGFAA  174 (184)
Q Consensus       102 -----ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~-~G~~~v~~l~GG~~~  174 (184)
                           ||||||+|||+..+. ..+.+.+.+.+...+..++++++||+||++|.||..++..|.+ .||++|++|+|||.+
T Consensus       218 ~~~~~GhIpGA~niP~~~~~~~~g~~~~~~~l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~~  297 (318)
T 3hzu_A          218 GALRAGHIPTAVHIPWGKAADESGRFRSREELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTE  297 (318)
T ss_dssp             SCSSCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHHH
T ss_pred             cCCcCcCCCCeeecCHHHhcCCCCcCCCHHHHHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHHH
Confidence                 999999999996554 3466777788888888889999999999999999999999997 899999999999999


Q ss_pred             HHh-CCCCCCC
Q 029984          175 WRQ-NGLPTEP  184 (184)
Q Consensus       175 W~~-~g~p~~~  184 (184)
                      |.+ .|+|+++
T Consensus       298 W~~~~g~Pv~~  308 (318)
T 3hzu_A          298 WGNAVRVPIVA  308 (318)
T ss_dssp             HTTSTTCCCBC
T ss_pred             HhcCCCCCccc
Confidence            995 6999874

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.90  E-value=2.1e-23  Score=166.58  Aligned_cols=140  Identities=21%  Similarity=0.344  Sum_probs=110.3

Q ss_pred             eeeecCCCcccccccc-ccCc-ccc---------cCCCCcccCHHHHHHHHh----CCCeEEEcCChhhHh---------
Q 029984           45 NIGFISSKILSFCPKA-SLRG-NLE---------AVGVPTSVPVRVAHELLQ----AGHRYLDVRTPEEFS---------  100 (184)
Q Consensus        45 ~~~~l~~~~~~~~~~~-~~~~-~~~---------~~~~~~~i~~~~~~~~~~----~~~~liDvR~~~e~~---------  100 (184)
                      .+.++.|++..|.... .... ...         .......++++++.++++    ++..|||||++.||.         
T Consensus       107 ~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~  186 (285)
T 1uar_A          107 DVRLMNGGRQKWVEEGRPLTTEVPSYPPGRYEVPYRDESIRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDY  186 (285)
T ss_dssp             CEEEETTHHHHHHHHTCCCBCCCCCCCCCCCCCCCCCGGGEECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC------
T ss_pred             CeEEecCCHHHHHHCCCcccCCCCcccCCCcccccCCcceEEcHHHHHHHHhhcccCCCcEEEcCCccceeeeccccccc
Confidence            4568899999996521 1111 000         011123489999998884    456799999999997         


Q ss_pred             -------cCCCCCcEEeccccccC-CCCCCCHHHHHHHHhc--CCCCCeEEEEcCCChhHHHHHHHHH-HccCCCeeecc
Q 029984          101 -------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NAGFAGITDIA  169 (184)
Q Consensus       101 -------~ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~rs~~~~~~L~-~~G~~~v~~l~  169 (184)
                             .||||||+|||+..+.. .+.+.+++.+...+..  ++++++|||||++|.||..+++.|+ .+||++|++|+
T Consensus       187 ~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~  266 (285)
T 1uar_A          187 PQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYD  266 (285)
T ss_dssp             --CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEES
T ss_pred             cccccccCCcCCCccccCHHHhcCCCCcCCCHHHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeC
Confidence                   89999999999876542 3566778888887776  7899999999999999999999999 99999999999


Q ss_pred             ccHHHHH-hCCCCCCC
Q 029984          170 GGFAAWR-QNGLPTEP  184 (184)
Q Consensus       170 GG~~~W~-~~g~p~~~  184 (184)
                      |||.+|. .+|+|+++
T Consensus       267 GG~~~W~~~~g~pv~~  282 (285)
T 1uar_A          267 GSWTEWGNLVGVPIAK  282 (285)
T ss_dssp             SHHHHHTTSTTCCCBC
T ss_pred             chHHHHhcCCCCCccc
Confidence            9999998 78999874

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.90  E-value=2.2e-23  Score=168.19  Aligned_cols=139  Identities=15%  Similarity=0.301  Sum_probs=110.0

Q ss_pred             ceeeecCCCccccccccc-cCcc-cc--------cCCCCcccCHHHHHHHHh-CCCeEEEcCChhhH-----------hc
Q 029984           44 DNIGFISSKILSFCPKAS-LRGN-LE--------AVGVPTSVPVRVAHELLQ-AGHRYLDVRTPEEF-----------SA  101 (184)
Q Consensus        44 ~~~~~l~~~~~~~~~~~~-~~~~-~~--------~~~~~~~i~~~~~~~~~~-~~~~liDvR~~~e~-----------~~  101 (184)
                      ..+..+.|++..|..... .... ..        .......++.+++.+.++ ++.+|||||++.||           ..
T Consensus       136 ~~V~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p~~~~~~  215 (302)
T 3olh_A          136 HAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP  215 (302)
T ss_dssp             CCEEEETTHHHHHHHSCCC-CCSCCCCCCCCCCCCCCGGGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSTTCCC
T ss_pred             CcEEECCCCHHHHHHcCCCcccCCCCcCcCccccccCccceecHHHHHHhhcCCCcEEEecCCHHHccccccCCCcCCcC
Confidence            346889999999986221 1111 00        011123578888888775 45899999999999           78


Q ss_pred             CCCCCcEEeccccccC-CCCCCCHHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhC
Q 029984          102 GHATGAINVPYMYRVG-SGMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       102 ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~  178 (184)
                      ||||||+|||+.++.. .+.+.+.+.+...+.  .++++++||+||++|.||..++..|+.+||++|++|+|||.+|.++
T Consensus       216 GhIpGAiniP~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~W~~~  295 (302)
T 3olh_A          216 GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMR  295 (302)
T ss_dssp             CCCTTCEECCGGGGBCSSSCBCCHHHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHHHHHH
T ss_pred             ccCCCceecCHHHhcCCCCccCCHHHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHHHhhc
Confidence            9999999999976653 456777888887766  4788999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 029984          179 GLPT  182 (184)
Q Consensus       179 g~p~  182 (184)
                      |+|.
T Consensus       296 ~~P~  299 (302)
T 3olh_A          296 ARPE  299 (302)
T ss_dssp             HCCC
T ss_pred             cCCC
Confidence            9885

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.89  E-value=3.5e-24  Score=156.69  Aligned_cols=106  Identities=20%  Similarity=0.294  Sum_probs=86.7

Q ss_pred             CCcccCHHHHHHHHh-CCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcC-CCh
Q 029984           71 VPTSVPVRVAHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGK  148 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~-~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~-~g~  148 (184)
                      ....++++++.++++ ++++|||||+++||..||||||+|||+..+.        +.+..+...++++++|||||+ +|.
T Consensus        26 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgAinip~~~l~--------~~~~~l~~~~~~~~~iVvyC~~~G~   97 (152)
T 1t3k_A           26 SISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFD--------DKISHLVQNVKDKDTLVFHSALSQV   97 (152)
T ss_dssp             SSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSS--------TTHHHHHHTCCSCCEEEESSSCCSS
T ss_pred             CCceECHHHHHHHhcCCCEEEEECCChhhccCccCCCCEECCHHHHH--------HHHHHHHHhcCCCCEEEEEcCCCCc
Confidence            345577777777665 3588999999999999999999999985321        234555556688999999999 999


Q ss_pred             hHHHHHHHHHH--------ccCCCeeeccccHHHHHhCCCCCCC
Q 029984          149 RSMMAATDLLN--------AGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       149 rs~~~~~~L~~--------~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      |+..++..|.+        .||++|++|+||+.+|.++|+|+++
T Consensus        98 rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  141 (152)
T 1t3k_A           98 RGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCR  141 (152)
T ss_dssp             SHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCC
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCcccc
Confidence            99888887754        7999999999999999999999864

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.89  E-value=5.4e-23  Score=163.11  Aligned_cols=113  Identities=19%  Similarity=0.169  Sum_probs=96.3

Q ss_pred             CcccCHHHHHHHHhC-CCeEEEcCChhhHhcCCCCCcEEeccccccCC-----CCCCCHHHHHHHHhc--CCCCCeEEEE
Q 029984           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--FRKHDEIIVG  143 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~--l~~~~~ivv~  143 (184)
                      +..++++++.+++++ +++|||||++.||..||||||+|||+..+...     +++...+.+...+..  ++++++||||
T Consensus         8 ~~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvy   87 (271)
T 1e0c_A            8 PLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVY   87 (271)
T ss_dssp             CSEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCCEECCHHHhccCCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEE
Confidence            456889999988854 58899999999999999999999999754322     455566666666655  6889999999


Q ss_pred             cCCCh-hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          144 CQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       144 c~~g~-rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      |++|. +|..+++.|+..||++|++|+||+.+|+.+|+|+++
T Consensus        88 c~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p~~~  129 (271)
T 1e0c_A           88 DDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSR  129 (271)
T ss_dssp             CSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             cCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCCccC
Confidence            99988 999999999999999999999999999999999863

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.89  E-value=8.3e-23  Score=162.50  Aligned_cols=139  Identities=22%  Similarity=0.330  Sum_probs=106.4

Q ss_pred             eeeecCCCccccccccc-cCcccccC----------CCCcccCHHHHHHHHhCCCeEEEcCChhhHhc------------
Q 029984           45 NIGFISSKILSFCPKAS-LRGNLEAV----------GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSA------------  101 (184)
Q Consensus        45 ~~~~l~~~~~~~~~~~~-~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~liDvR~~~e~~~------------  101 (184)
                      .+..+.|++..|..... ........          .....++.+++.+++.++. |||||++.||..            
T Consensus       105 ~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~-liDvR~~~e~~~~~~~~~~~~~~~  183 (277)
T 3aay_A          105 KVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKN-LIDVRSPDEFSGKILAPAHLPQEQ  183 (277)
T ss_dssp             SEEEETTHHHHHHHTTCCCBCCCCCCCCCCCCCCCCCGGGEECHHHHHHTTTTSE-EEECSCHHHHHTSCCC-----CCC
T ss_pred             cEEEecCCHHHHHHcCCccccCCCCcCCCCccccCcccchhcCHHHHHHhcCCCC-EEEeCChHHeeeeecccccccccc
Confidence            45688999999965221 11110000          0111266888888776655 999999999985            


Q ss_pred             ----CCCCCcEEecccccc-CCCCCCCHHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHH-ccCCCeeeccccHH
Q 029984          102 ----GHATGAINVPYMYRV-GSGMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLLN-AGFAGITDIAGGFA  173 (184)
Q Consensus       102 ----ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~rs~~~~~~L~~-~G~~~v~~l~GG~~  173 (184)
                          ||||||+|||+..+. ..+.+.+++.+...+.  .++++++||+||.+|.||..+++.|++ +||++|++|+|||.
T Consensus       184 ~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~  263 (277)
T 3aay_A          184 SQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWT  263 (277)
T ss_dssp             CSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred             cccCCcCCCceecCHHHhcCCCCcCCCHHHHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHH
Confidence                999999999986543 2355667777777665  468899999999999999999999996 99999999999999


Q ss_pred             HHHh-CCCCCCC
Q 029984          174 AWRQ-NGLPTEP  184 (184)
Q Consensus       174 ~W~~-~g~p~~~  184 (184)
                      +|.. +|+|+++
T Consensus       264 ~W~~~~g~pv~~  275 (277)
T 3aay_A          264 EYGSLVGAPIEL  275 (277)
T ss_dssp             HHTTSTTCCCBC
T ss_pred             HHhcCCCCCCcc
Confidence            9999 8999874

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.89  E-value=1.7e-23  Score=147.98  Aligned_cols=106  Identities=24%  Similarity=0.219  Sum_probs=81.0

Q ss_pred             ccCHHHHHHHHhC--CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHH---h------cCCCCCeEEE
Q 029984           74 SVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS---T------RFRKHDEIIV  142 (184)
Q Consensus        74 ~i~~~~~~~~~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~---~------~l~~~~~ivv  142 (184)
                      .++++++.+++++  +++|||||++.||..||||||+|||+..+...    ....+....   .      .++++++|||
T Consensus         2 ~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~ivv   77 (127)
T 3i2v_A            2 RVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERR----DAESLKLLKEAIWEEKQGTQEGAAVPIYV   77 (127)
T ss_dssp             EECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSEECCHHHHHTT----CHHHHHHHHHHHHHHHTTC---CCEEEEE
T ss_pred             CCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCceeCChHHHhhh----hhhhHHHHHHHHhhhcccccCCCCCeEEE
Confidence            4788899888764  38999999999999999999999998533211    111111111   1      1234569999


Q ss_pred             EcCCChhHHHHHHHHHHc------cCCCeeeccccHHHHHhCCCCCC
Q 029984          143 GCQSGKRSMMAATDLLNA------GFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       143 ~c~~g~rs~~~~~~L~~~------G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      ||.+|.||..+++.|.+.      |+.+|++|+|||.+|.+++.|..
T Consensus        78 ~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~~~  124 (127)
T 3i2v_A           78 ICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDGTF  124 (127)
T ss_dssp             ECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCTTS
T ss_pred             EcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCCCC
Confidence            999999999999999999      68899999999999998876643

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.89  E-value=2.8e-23  Score=147.93  Aligned_cols=103  Identities=25%  Similarity=0.404  Sum_probs=77.8

Q ss_pred             cccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCC----------CC-----------CCCHHHHHHHH
Q 029984           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------GM-----------TKNLKFVEEVS  131 (184)
Q Consensus        73 ~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~----------~~-----------~~~~~~~~~~~  131 (184)
                      ..++++++.+  .++++|||||++.||..||||||+|||+..+...          +.           ......+....
T Consensus         5 ~~i~~~el~~--~~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (134)
T 3g5j_A            5 SVIKIEKALK--LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSYKLKDIYLQA   82 (134)
T ss_dssp             CEECHHHHTT--CTTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHGGGHHHHHHHH
T ss_pred             cccCHHHHHh--cCCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecChhHHHhcccccccccHHHHHHHH
Confidence            4567777765  5568999999999999999999999998421100          00           00001223333


Q ss_pred             hcCCCC-CeEEEEc-CCChhHHHHHHHHHHccCCCeeeccccHHHHHhC
Q 029984          132 TRFRKH-DEIIVGC-QSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       132 ~~l~~~-~~ivv~c-~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~  178 (184)
                      ..++++ ++||||| .+|.||..+++.|+..|| +|++|+||+.+|++.
T Consensus        83 ~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~  130 (134)
T 3g5j_A           83 AELALNYDNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYKAYRNF  130 (134)
T ss_dssp             HHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHHHHHHH
T ss_pred             HHhccCCCeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHHHHHHH
Confidence            445677 9999999 589999999999999999 999999999999874

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.88  E-value=1.3e-23  Score=138.93  Aligned_cols=77  Identities=32%  Similarity=0.567  Sum_probs=68.2

Q ss_pred             CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcCCChhHHHHHHHHHHccCCCe
Q 029984           88 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAGFAGI  165 (184)
Q Consensus        88 ~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v  165 (184)
                      .+|||||++.||..||||||+|+|+            +.+......+  +++++||+||.+|.||..+++.|++.||++|
T Consensus         2 ~~liDvR~~~e~~~ghIpgA~~ip~------------~~l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v   69 (85)
T 2jtq_A            2 EHWIDVRVPEQYQQEHVQGAINIPL------------KEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHV   69 (85)
T ss_dssp             EEEEECSCHHHHTTEEETTCEECCH------------HHHHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSE
T ss_pred             CEEEECCCHHHHHhCCCCCCEEcCH------------HHHHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCE
Confidence            5799999999999999999999998            3444445444  7899999999999999999999999999999


Q ss_pred             eeccccHHHHHh
Q 029984          166 TDIAGGFAAWRQ  177 (184)
Q Consensus       166 ~~l~GG~~~W~~  177 (184)
                      +++ |||.+|..
T Consensus        70 ~~l-GG~~~w~~   80 (85)
T 2jtq_A           70 ENA-GGLKDIAM   80 (85)
T ss_dssp             EEE-EETTTCCS
T ss_pred             Eec-cCHHHHhc
Confidence            999 99999954

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.88  E-value=3.2e-23  Score=148.46  Aligned_cols=107  Identities=21%  Similarity=0.298  Sum_probs=86.0

Q ss_pred             CcccCHHHHHHHHh-C-CCeEEEcCChhhHhc-CCC------CCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeE
Q 029984           72 PTSVPVRVAHELLQ-A-GHRYLDVRTPEEFSA-GHA------TGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEI  140 (184)
Q Consensus        72 ~~~i~~~~~~~~~~-~-~~~liDvR~~~e~~~-ghI------pgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~i  140 (184)
                      ...++++++.++++ + +++|||||++.||.. +|+      |||+|||+...      ..++++..+...+  +++++|
T Consensus         4 ~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~------~~~~~~~~l~~~~~~~~~~~i   77 (134)
T 1vee_A            4 GSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGE------DKPGFLKKLSLKFKDPENTTL   77 (134)
T ss_dssp             SCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGG------GHHHHHHHHHTTCSCGGGCEE
T ss_pred             CCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeecccc------cChhHHHHHHHHhCCCCCCEE
Confidence            34588889988876 3 588999999999985 333      79999998521      1223444444433  678999


Q ss_pred             EEEcCCChhHHHHHHHHHHccCCCeeeccccH---HHHHhCCCCCCC
Q 029984          141 IVGCQSGKRSMMAATDLLNAGFAGITDIAGGF---AAWRQNGLPTEP  184 (184)
Q Consensus       141 vv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~---~~W~~~g~p~~~  184 (184)
                      ||||.+|.||..++..|.++||++|++|.||+   .+|+++|+|+++
T Consensus        78 vv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~~~  124 (134)
T 1vee_A           78 YILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIE  124 (134)
T ss_dssp             EEECSSSTTHHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCEEC
T ss_pred             EEEeCCCCcHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCCCC
Confidence            99999999999999999999999999999999   789999999863

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.88  E-value=1.4e-22  Score=161.42  Aligned_cols=111  Identities=19%  Similarity=0.198  Sum_probs=94.5

Q ss_pred             cccCHHHHHHHHhC-CCeEEEcC----------ChhhHhcCCCCCcEEeccccccCC-----CCCCCHHHHHHHHhc--C
Q 029984           73 TSVPVRVAHELLQA-GHRYLDVR----------TPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--F  134 (184)
Q Consensus        73 ~~i~~~~~~~~~~~-~~~liDvR----------~~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~--l  134 (184)
                      ..++++++.+++++ +++|||||          ++.||..||||||+|+|+..+...     +++.+.+.+...+..  +
T Consensus         4 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi   83 (280)
T 1urh_A            4 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGV   83 (280)
T ss_dssp             CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTTC
T ss_pred             ceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            46788899888764 58899999          789999999999999999754322     345566677766665  5


Q ss_pred             CCCCeEEEEcCCChh-HHHHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          135 RKHDEIIVGCQSGKR-SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       135 ~~~~~ivv~c~~g~r-s~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      +++++|||||.+|.+ |..+++.|+..||++|++|+||+.+|..+|+|++
T Consensus        84 ~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  133 (280)
T 1urh_A           84 NQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLE  133 (280)
T ss_dssp             CTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCB
T ss_pred             CCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCccc
Confidence            789999999999998 9999999999999999999999999999999986

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.88  E-value=2.3e-22  Score=163.35  Aligned_cols=113  Identities=16%  Similarity=0.186  Sum_probs=95.3

Q ss_pred             CcccCHHHHHHHHhC-CCeEEEcCChhh-HhcCCCCCcEEecccccc---CCCCCCCHHHHHHHHhc--CCCCCeEEEEc
Q 029984           72 PTSVPVRVAHELLQA-GHRYLDVRTPEE-FSAGHATGAINVPYMYRV---GSGMTKNLKFVEEVSTR--FRKHDEIIVGC  144 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~liDvR~~~e-~~~ghIpgAi~ip~~~~~---~~~~~~~~~~~~~~~~~--l~~~~~ivv~c  144 (184)
                      ...++++++.+++++ +++|||||++.| |..||||||+|||+....   ..+.+.+.+.+...+..  ++++++|||||
T Consensus        39 ~~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~lgi~~~~~vVvyc  118 (318)
T 3hzu_A           39 ERLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLNDPRVRDYINGEQFAELMDRKGIARDDTVVIYG  118 (318)
T ss_dssp             GGEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             CceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCCeEeCchhhhccCcccCCCCHHHHHHHHHHcCCCCCCeEEEEC
Confidence            446899999998864 488999999876 999999999999974222   23455666677777666  68899999999


Q ss_pred             CCCh-hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          145 QSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       145 ~~g~-rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      ++|. +|..+++.|+..||++|++|+||+.+|+++|+|+++
T Consensus       119 ~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  159 (318)
T 3hzu_A          119 DKSNWWAAYALWVFTLFGHADVRLLNGGRDLWLAERRETTL  159 (318)
T ss_dssp             SGGGHHHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBC
T ss_pred             CCCCccHHHHHHHHHHcCCCceEEccCCHHHHhhcCCCccc
Confidence            9887 899999999999999999999999999999999863

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.88  E-value=1.7e-22  Score=171.83  Aligned_cols=120  Identities=25%  Similarity=0.426  Sum_probs=99.7

Q ss_pred             eeecCCCccccccccccCcccccCCCCcccCHHHHHHHHhC-CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCH
Q 029984           46 IGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNL  124 (184)
Q Consensus        46 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~  124 (184)
                      ..++. ++..|....     . .......++++++.+++++ +.+|||||++.||..||||||+|+|+            
T Consensus       354 ~~~l~-G~~~W~~~g-----~-~~~~~~~i~~~~l~~~~~~~~~~lvDvR~~~e~~~ghIpgA~~ip~------------  414 (474)
T 3tp9_A          354 VDWTD-PAAVDRAAP-----D-DVASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPL------------  414 (474)
T ss_dssp             EEEEC-GGGGTTCCG-----G-GEECCEEECHHHHHHTTTTTCCEEEECSCHHHHHHCBCTTCEECCH------------
T ss_pred             EEecC-cHHHHHhcc-----c-ccccccccCHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCH------------
Confidence            34455 788887511     1 1122356888999888764 58999999999999999999999998            


Q ss_pred             HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       125 ~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      ..+......++++++||+||++|.||..++..|+..||++|++|+|||.+|.++|+|+++
T Consensus       415 ~~l~~~~~~l~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~~W~~~g~p~~~  474 (474)
T 3tp9_A          415 SKLAAHIHDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVEA  474 (474)
T ss_dssp             HHHTTTGGGSCSSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHHHHTTCCCBC
T ss_pred             HHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHHHHHhCCCCCCC
Confidence            445555667889999999999999999999999999999999999999999999999974

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.87  E-value=4.3e-22  Score=171.98  Aligned_cols=128  Identities=19%  Similarity=0.314  Sum_probs=104.9

Q ss_pred             eeeecCC-CccccccccccCcccccCCCCcccCHHHHHHHHhC-CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCC
Q 029984           45 NIGFISS-KILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTK  122 (184)
Q Consensus        45 ~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~  122 (184)
                      .+..+.| ++..|..................++++++.+++.+ +.+|||||++.||..||||||+|+|.          
T Consensus       348 ~v~~l~G~G~~~w~~~g~p~~~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA~~ip~----------  417 (539)
T 1yt8_A          348 QVAVLDGLSEADFSERGAWSAPLPRQPRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLR----------  417 (539)
T ss_dssp             EEEEECSCCGGGCCBCSSCCCCCCCCCCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCG----------
T ss_pred             eEEEecCCChHHHHHhhccccCCCCCCcCCccCHHHHHHHhcCCCeEEEEeCCHHHhhcCcCCCchhCCH----------
Confidence            3556888 99999763221111112334567899999998875 48899999999999999999999998          


Q ss_pred             CHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          123 NLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       123 ~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                        ..+...+..++++++||+||.+|.||..++..|+..||++|++|+|||.+|.++|+|+++
T Consensus       418 --~~l~~~l~~l~~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  477 (539)
T 1yt8_A          418 --SQLKQALERLGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTED  477 (539)
T ss_dssp             --GGHHHHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBC
T ss_pred             --HHHHHHHHhCCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcHHHHHhCCCCccc
Confidence              345555566788999999999999999999999999999999999999999999999874

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.87  E-value=4.9e-22  Score=158.04  Aligned_cols=112  Identities=16%  Similarity=0.225  Sum_probs=92.9

Q ss_pred             cccCHHHHHHHHhC-CCeEEEcCC-hhhHhcCCCCCcEEeccccccC---CCCCCCHHHHHHHHhc--CCCCCeEEEEcC
Q 029984           73 TSVPVRVAHELLQA-GHRYLDVRT-PEEFSAGHATGAINVPYMYRVG---SGMTKNLKFVEEVSTR--FRKHDEIIVGCQ  145 (184)
Q Consensus        73 ~~i~~~~~~~~~~~-~~~liDvR~-~~e~~~ghIpgAi~ip~~~~~~---~~~~~~~~~~~~~~~~--l~~~~~ivv~c~  145 (184)
                      ..++++++.+++++ +.+|||||+ +.||..||||||+|||+.....   .+.+.+.+.+...+..  ++++++|||||.
T Consensus         6 ~~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvyc~   85 (277)
T 3aay_A            6 VLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGG   85 (277)
T ss_dssp             HEECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCSSSSSBCCHHHHHHHHHHHTCCTTSEEEEECS
T ss_pred             ceEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCcEEecccccccCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEECC
Confidence            35788888887765 478999998 8999999999999999864322   2344556666666655  788999999999


Q ss_pred             CCh-hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          146 SGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       146 ~g~-rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      +|. +|..+++.|+..||++|++|+||+.+|+.+|+|+++
T Consensus        86 ~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  125 (277)
T 3aay_A           86 NNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSS  125 (277)
T ss_dssp             GGGHHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCCCBC
T ss_pred             CCCchHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCcccc
Confidence            875 688999999999999999999999999999999863

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.86  E-value=1.8e-21  Score=156.32  Aligned_cols=113  Identities=19%  Similarity=0.199  Sum_probs=94.3

Q ss_pred             CcccCHHHHHHHHhC-----CCeEEEcC--------ChhhHhcCCCCCcEEeccccccCC-----CCCCCHHHHHHHHhc
Q 029984           72 PTSVPVRVAHELLQA-----GHRYLDVR--------TPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR  133 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~-----~~~liDvR--------~~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~  133 (184)
                      ...++++++.+++++     +++|||||        ++.||..||||||+|||+..+...     .++.+.+.+...+..
T Consensus         7 ~~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~l~~   86 (296)
T 1rhs_A            7 RALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGS   86 (296)
T ss_dssp             CSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHH
T ss_pred             CceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence            457889999998875     58899999        689999999999999999744321     344556666666654


Q ss_pred             --CCCCCeEEEEcCC--Chh-HHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          134 --FRKHDEIIVGCQS--GKR-SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       134 --l~~~~~ivv~c~~--g~r-s~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                        ++++++|||||.+  |.+ +.++++.|+..||++|++|+||+.+|+.+|+|+++
T Consensus        87 lgi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  142 (296)
T 1rhs_A           87 LGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTS  142 (296)
T ss_dssp             TTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             cCCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCcccc
Confidence              6789999999998  876 88999999999999999999999999999999863

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.86  E-value=9.3e-22  Score=144.80  Aligned_cols=102  Identities=17%  Similarity=0.288  Sum_probs=83.5

Q ss_pred             CCCcccCHHHHHHHHhC-------CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHh---cC-CCCC
Q 029984           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST---RF-RKHD  138 (184)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-------~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~---~l-~~~~  138 (184)
                      .....++++++.+++++       +++|||||++.||..||||||+|||+.           +.......   .+ ++++
T Consensus        20 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~-----------~~~~~~~~~~~~~~~~~~   88 (161)
T 1c25_A           20 QDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHME-----------EEVEDFLLKKPIVPTDGK   88 (161)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHTTTSCCCCCTTS
T ss_pred             CCcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChh-----------HHHHHHHhhhhhccCCCC
Confidence            34567999999998875       578999999999999999999999984           33333322   22 5678


Q ss_pred             eE--EEEcC-CChhHHHHHHHHHHc----------cCCCeeeccccHHHHHhCCCCC
Q 029984          139 EI--IVGCQ-SGKRSMMAATDLLNA----------GFAGITDIAGGFAAWRQNGLPT  182 (184)
Q Consensus       139 ~i--vv~c~-~g~rs~~~~~~L~~~----------G~~~v~~l~GG~~~W~~~g~p~  182 (184)
                      ++  |+||. +|.||..++..|.+.          ||++|++|+||+.+|.++|.|+
T Consensus        89 ~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~~~~~~  145 (161)
T 1c25_A           89 RVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSY  145 (161)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGG
T ss_pred             CeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHHHcccc
Confidence            86  67899 999999999999864          9999999999999999987765

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.86  E-value=2.1e-21  Score=149.08  Aligned_cols=102  Identities=18%  Similarity=0.232  Sum_probs=84.7

Q ss_pred             CCCcccCHHHHHHHHhC-------CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHh---cCC--CC
Q 029984           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST---RFR--KH  137 (184)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-------~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~---~l~--~~  137 (184)
                      .....++++++.+++++       +++|||||++.||..||||||+|||+.           +.......   .++  ++
T Consensus        41 ~~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~-----------~l~~~~~~~~~~l~~~~d  109 (211)
T 1qb0_A           41 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLD  109 (211)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHTTTCCCSSTT
T ss_pred             CCCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCch-----------HHHHHhhhhhhhccccCC
Confidence            34567899999998875       478999999999999999999999984           33332222   343  67


Q ss_pred             CeE--EEEcC-CChhHHHHHHHHHH----------ccCCCeeeccccHHHHHhCCCCC
Q 029984          138 DEI--IVGCQ-SGKRSMMAATDLLN----------AGFAGITDIAGGFAAWRQNGLPT  182 (184)
Q Consensus       138 ~~i--vv~c~-~g~rs~~~~~~L~~----------~G~~~v~~l~GG~~~W~~~g~p~  182 (184)
                      ++|  |+||. +|.||..++..|.+          .||++|++|+||+.+|.++|.|+
T Consensus       110 ~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~g~~~  167 (211)
T 1qb0_A          110 KRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNF  167 (211)
T ss_dssp             SEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGG
T ss_pred             CCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHHHCccc
Confidence            887  78899 99999999999986          69999999999999999998775

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.86  E-value=3.7e-21  Score=155.12  Aligned_cols=115  Identities=18%  Similarity=0.180  Sum_probs=93.6

Q ss_pred             CCCcccCHHHHHHHHhC-----CCeEEEcC---------ChhhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHH
Q 029984           70 GVPTSVPVRVAHELLQA-----GHRYLDVR---------TPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEV  130 (184)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-----~~~liDvR---------~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~  130 (184)
                      .....++++++.+++++     +++|||||         ++.||..||||||+|||+..+.     ..+++...+.+...
T Consensus        19 ~~~~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~~~~~~~~lp~~~~~~~~   98 (302)
T 3olh_A           19 YFQSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEY   98 (302)
T ss_dssp             -CCCEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCSSCSSSSCCCCHHHHHHH
T ss_pred             CCCCccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCcCCCCCCCCCCHHHHHHH
Confidence            34567899999998875     68899999         8899999999999999986432     12344566677776


Q ss_pred             HhcC--CCCCeEEEEcCC---ChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          131 STRF--RKHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       131 ~~~l--~~~~~ivv~c~~---g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      +..+  +++++|||||.+   +.+|.++++.|+..||++|++|+||+.+|+.+|+|+++
T Consensus        99 ~~~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  157 (302)
T 3olh_A           99 AGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSS  157 (302)
T ss_dssp             HHHTTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC-CC
T ss_pred             HHHcCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCCccc
Confidence            6664  789999999964   34699999999999999999999999999999999863

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.86  E-value=5.4e-22  Score=158.37  Aligned_cols=111  Identities=16%  Similarity=0.195  Sum_probs=92.7

Q ss_pred             cccCHHHHHHHHhC-CCeEEEcC-ChhhHhcCCCCCcEEeccccccC---CCCCCCHHHHHHHHhc--CCCCCeEEEEcC
Q 029984           73 TSVPVRVAHELLQA-GHRYLDVR-TPEEFSAGHATGAINVPYMYRVG---SGMTKNLKFVEEVSTR--FRKHDEIIVGCQ  145 (184)
Q Consensus        73 ~~i~~~~~~~~~~~-~~~liDvR-~~~e~~~ghIpgAi~ip~~~~~~---~~~~~~~~~~~~~~~~--l~~~~~ivv~c~  145 (184)
                      ..++++++.+++++ +++||||| ++.||..||||||+|+|+.....   .+.+.+.+.+...+..  ++++++|||||+
T Consensus         8 ~~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ivvyc~   87 (285)
T 1uar_A            8 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLYGD   87 (285)
T ss_dssp             GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEECH
T ss_pred             ceEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCCEECCchhhccCCcccCCCCHHHHHHHHHHcCCCCCCeEEEECC
Confidence            46888999888775 58899999 78999999999999999853221   2344555566666554  588999999999


Q ss_pred             CCh-hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          146 SGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       146 ~g~-rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      +|. +|..+++.|+..||++|++|+||+.+|..+|+|++
T Consensus        88 ~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  126 (285)
T 1uar_A           88 KNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLT  126 (285)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCB
T ss_pred             CCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCccc
Confidence            988 79999999999999999999999999999999986

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.86  E-value=2.3e-21  Score=144.57  Aligned_cols=102  Identities=17%  Similarity=0.201  Sum_probs=81.4

Q ss_pred             CCCcccCHHHHHHHHhC-------CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHh---cCC--CC
Q 029984           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST---RFR--KH  137 (184)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-------~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~---~l~--~~  137 (184)
                      .....++++++.+++++       +++|||||++.||..||||||+|||+.           +.......   .++  ++
T Consensus        21 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~-----------~l~~~~~~~~~~~~~~~~   89 (175)
T 2a2k_A           21 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLD   89 (175)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHSSCCCC----
T ss_pred             CCCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChh-----------HHHHHhhhhhhhccccCC
Confidence            34567999999998875       478999999999999999999999984           23233222   133  67


Q ss_pred             CeEEE--EcC-CChhHHHHHHHHHH----------ccCCCeeeccccHHHHHhCCCCC
Q 029984          138 DEIIV--GCQ-SGKRSMMAATDLLN----------AGFAGITDIAGGFAAWRQNGLPT  182 (184)
Q Consensus       138 ~~ivv--~c~-~g~rs~~~~~~L~~----------~G~~~v~~l~GG~~~W~~~g~p~  182 (184)
                      ++|||  ||+ +|.||..++..|++          .||++|++|+||+.+|.++|.|+
T Consensus        90 ~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~~~~~  147 (175)
T 2a2k_A           90 KRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNF  147 (175)
T ss_dssp             CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGG
T ss_pred             CCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHHHCccc
Confidence            88855  698 89999999999986          49999999999999999998775

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.85  E-value=3e-21  Score=162.25  Aligned_cols=141  Identities=13%  Similarity=0.196  Sum_probs=107.2

Q ss_pred             ceeeecCCCccccccccc-cCc-ccc---c---------CCCCcccCHHHHHHHHhC-CCeEEEcCChhhH---------
Q 029984           44 DNIGFISSKILSFCPKAS-LRG-NLE---A---------VGVPTSVPVRVAHELLQA-GHRYLDVRTPEEF---------   99 (184)
Q Consensus        44 ~~~~~l~~~~~~~~~~~~-~~~-~~~---~---------~~~~~~i~~~~~~~~~~~-~~~liDvR~~~e~---------   99 (184)
                      ..+..++|++..|..... ... ...   .         ......++.+++.+++.+ +.+|||||++.||         
T Consensus       229 ~~v~~l~Gg~~~W~~~g~pv~~g~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~~~~~~  308 (423)
T 2wlr_A          229 KDVRLLDGGWQTWSDAGLPVERGTPPKVKAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSY  308 (423)
T ss_dssp             SCEEEETTTHHHHHHTTCCCBCSSCCCCCCCCCCSSCSCSCGGGEECHHHHHTTTTCSSEEEEECSCHHHHHTSCCSSTT
T ss_pred             CCeEEECCCHHHHhhCCCCcccCCCCCCCCCcCcccccCCChhheecHHHHHHHhcCCCceEEecCchhheeeeccCCCC
Confidence            346788999999965211 111 000   0         001234788888887764 4789999999999         


Q ss_pred             --hcCCCCCcEEeccc-------cc-cCCCCCCCHHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeee
Q 029984          100 --SAGHATGAINVPYM-------YR-VGSGMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITD  167 (184)
Q Consensus       100 --~~ghIpgAi~ip~~-------~~-~~~~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~  167 (184)
                        ..||||||+|+|+.       ++ ...+.+.+.+.+...+.  .++++++||+||.+|.||..++..|+.+||+||++
T Consensus       309 ~~~~GhIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~  388 (423)
T 2wlr_A          309 IKPKGEIAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSV  388 (423)
T ss_dssp             CCCCSEETTCEECCCCSSTTCCGGGBCTTSSBCCHHHHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEE
T ss_pred             CCcCCCCCCccccccccccccHHHHcCCCCcCCCHHHHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcce
Confidence              78999999999974       11 12345566677777664  57889999999999999999999999999999999


Q ss_pred             ccccHHHHHh-CCCCCCC
Q 029984          168 IAGGFAAWRQ-NGLPTEP  184 (184)
Q Consensus       168 l~GG~~~W~~-~g~p~~~  184 (184)
                      |+|||.+|.. .|+|+++
T Consensus       389 ~~GG~~~W~~~~~~Pv~~  406 (423)
T 2wlr_A          389 YDGGWYEWSSDPKNPVAT  406 (423)
T ss_dssp             ESSHHHHHTTSTTSCEEC
T ss_pred             eCccHHHHhcCCCCCccc
Confidence            9999999998 8999863

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.85  E-value=8.5e-22  Score=143.80  Aligned_cols=110  Identities=18%  Similarity=0.173  Sum_probs=78.7

Q ss_pred             CcccCHHHHHHHHh---CCCeEEEcCChhhHhcCCCCCcEEeccccccC----CCCCCCHHHH-HHHHh--cCCCCCeEE
Q 029984           72 PTSVPVRVAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVG----SGMTKNLKFV-EEVST--RFRKHDEII  141 (184)
Q Consensus        72 ~~~i~~~~~~~~~~---~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~----~~~~~~~~~~-~~~~~--~l~~~~~iv  141 (184)
                      .+.|+++++.++++   ++++|||||++.||..||||||+|||+..+..    .+.......+ .....  .++++++||
T Consensus         3 ~~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~iV   82 (153)
T 2vsw_A            3 GTQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVV   82 (153)
T ss_dssp             CEEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCEECCCCHHHHHHHHTTSSCHHHHHHHSCSSCCCCCTTSEEE
T ss_pred             CccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCeeeChHHHHHhhhhcCCcCHHHhcCchhhhhhccCCCCeEE
Confidence            35678899999886   34889999999999999999999999853210    0100000110 00001  246789999


Q ss_pred             EEcCCChhHHHH------HHHHH--HccCCCeeeccccHHHHHhCCCC
Q 029984          142 VGCQSGKRSMMA------ATDLL--NAGFAGITDIAGGFAAWRQNGLP  181 (184)
Q Consensus       142 v~c~~g~rs~~~------~~~L~--~~G~~~v~~l~GG~~~W~~~g~p  181 (184)
                      |||++|.++..+      ++.|.  ..||++|++|+||+.+|.+.+.+
T Consensus        83 vyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~~~~~  130 (153)
T 2vsw_A           83 VYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPG  130 (153)
T ss_dssp             EECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHHHCGG
T ss_pred             EEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHHhChh
Confidence            999999887655      56776  34999999999999999886543

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.85  E-value=1.6e-21  Score=151.28  Aligned_cols=99  Identities=33%  Similarity=0.506  Sum_probs=82.4

Q ss_pred             ccCHHHHHHHHhCCCeEEEcCChhhHhc----------CCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEE
Q 029984           74 SVPVRVAHELLQAGHRYLDVRTPEEFSA----------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVG  143 (184)
Q Consensus        74 ~i~~~~~~~~~~~~~~liDvR~~~e~~~----------ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~  143 (184)
                      .++.+++.+    +.+|||||++.||..          ||||||+|+|+..+....     +.+..  ..++++++||+|
T Consensus       122 ~i~~~e~~~----~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~-----e~~~~--~~~~~~~~iv~~  190 (230)
T 2eg4_A          122 LLTADEAAR----HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPE-----GLLER--LGLQPGQEVGVY  190 (230)
T ss_dssp             BCCHHHHHT----CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCCT-----THHHH--HTCCTTCEEEEE
T ss_pred             eeCHHHHhh----CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCChH-----HHHHh--cCCCCCCCEEEE
Confidence            466776655    788999999999998          999999999986443221     11111  247889999999


Q ss_pred             cCCChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          144 CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       144 c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      |++|.||..++..|+++| .+|++|+|||.+|.++|+|+++
T Consensus       191 C~~G~rs~~a~~~L~~~G-~~v~~~~Gg~~~W~~~g~p~~~  230 (230)
T 2eg4_A          191 CHSGARSAVAFFVLRSLG-VRARNYLGSMHEWLQEGLPTEP  230 (230)
T ss_dssp             CSSSHHHHHHHHHHHHTT-CEEEECSSHHHHHHHTTCCCBC
T ss_pred             cCChHHHHHHHHHHHHcC-CCcEEecCcHHHHhhcCCCCCC
Confidence            999999999999999999 8999999999999999999975

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.84  E-value=8.8e-21  Score=149.90  Aligned_cols=105  Identities=19%  Similarity=0.216  Sum_probs=85.1

Q ss_pred             CCCcccCHHHHHHHHhC-CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCCh
Q 029984           70 GVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (184)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~  148 (184)
                      .....++++++.+++++ +++|||||++.||..||||||+|+|+..+.     ..++.+.... ..+++++||+||.+|.
T Consensus       119 ~~~~~Is~~el~~ll~~~~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~-----~~~~~l~~~l-~~~kdk~IVvyC~~G~  192 (265)
T 4f67_A          119 NAGTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIENFR-----EFPDYVQRNL-IDKKDKKIAMFCTGGI  192 (265)
T ss_dssp             CTTCEECHHHHHHHTTCTTSEEEECSCHHHHHHEEETTCBCCCCSSGG-----GHHHHHHHHT-GGGTTSCEEEECSSSH
T ss_pred             CCCceECHHHHHHHhcCCCeEEEEeCCchHhhcCcCCCCEeCCHHHHH-----hhHHHHHHhh-hhCCCCeEEEEeCCCh
Confidence            34567899999999875 489999999999999999999999985221     0112222222 2367899999999999


Q ss_pred             hHHHHHHHHHHccCCCeeeccccHHHHHhCCC
Q 029984          149 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGL  180 (184)
Q Consensus       149 rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~  180 (184)
                      ||..+++.|.+.||++|++|+||+.+|.++..
T Consensus       193 RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~~~~~  224 (265)
T 4f67_A          193 RCEKTTAYMKELGFEHVYQLHDGILNYLESIP  224 (265)
T ss_dssp             HHHHHHHHHHHHTCSSEEEETTHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCEEEecCHHHHHHHhcC
Confidence            99999999999999999999999999988643

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.84  E-value=5.1e-21  Score=139.82  Aligned_cols=103  Identities=20%  Similarity=0.270  Sum_probs=78.4

Q ss_pred             CcccCHHHHHHHHhC-----CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEc
Q 029984           72 PTSVPVRVAHELLQA-----GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGC  144 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~-----~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c  144 (184)
                      ...++++++.+++++     +++|||||++ ||..||||||+|||+..+.       ...+..+...+  ...+.||+||
T Consensus         4 ~~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~-------~~~~~~l~~~l~~~~~~~vV~yC   75 (152)
T 2j6p_A            4 YTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCT-------EEMYEKLAKTLFEEKKELAVFHC   75 (152)
T ss_dssp             CEEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCC-------HHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             cCccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhh-------HHHHHHHHHHhcccCCCEEEEEc
Confidence            346888999988875     6889999999 9999999999999985321       11222222222  2334577789


Q ss_pred             -CCChhHHHHH----HHHHHccC--CCeeeccccHHHHHhCCCCC
Q 029984          145 -QSGKRSMMAA----TDLLNAGF--AGITDIAGGFAAWRQNGLPT  182 (184)
Q Consensus       145 -~~g~rs~~~~----~~L~~~G~--~~v~~l~GG~~~W~~~g~p~  182 (184)
                       .+|.|+..++    ..|.+.||  .+|++|+||+.+|.++|.++
T Consensus        76 ~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~  120 (152)
T 2j6p_A           76 AQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDV  120 (152)
T ss_dssp             SSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTT
T ss_pred             CCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCC
Confidence             6999998887    77888997  58999999999999988765

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.84  E-value=1.2e-20  Score=145.14  Aligned_cols=98  Identities=19%  Similarity=0.256  Sum_probs=79.0

Q ss_pred             CCcccCHHHHHHHHhC-------CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc---C--CCCC
Q 029984           71 VPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---F--RKHD  138 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~-------~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~---l--~~~~  138 (184)
                      ....|+++++.+++++       +++|||||++.||..||||||+|||+.           +.+...+..   +  ++++
T Consensus        55 ~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~-----------~~l~~~l~~~~~~~~~~~k  123 (216)
T 3op3_A           55 DLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQ-----------EELFNFFLKKPIVPLDTQK  123 (216)
T ss_dssp             SSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSH-----------HHHHHHHTSSCCCCSSTTS
T ss_pred             CCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChH-----------HHHHHHHhhccccccccCC
Confidence            4567999999999875       378999999999999999999999983           334444321   2  2344


Q ss_pred             --eEEEEcC-CChhHHHHHHHHHHc----------cCCCeeeccccHHHHHhCC
Q 029984          139 --EIIVGCQ-SGKRSMMAATDLLNA----------GFAGITDIAGGFAAWRQNG  179 (184)
Q Consensus       139 --~ivv~c~-~g~rs~~~~~~L~~~----------G~~~v~~l~GG~~~W~~~g  179 (184)
                        +|||||. +|.||..++..|+..          ||++|++|+||+.+|.++.
T Consensus       124 ~~~VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~~  177 (216)
T 3op3_A          124 RIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPEY  177 (216)
T ss_dssp             EEEEEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTC
T ss_pred             CCEEEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHHhC
Confidence              4999999 999999999999987          8999999999999998763

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.84  E-value=3.7e-21  Score=138.03  Aligned_cols=108  Identities=19%  Similarity=0.244  Sum_probs=74.5

Q ss_pred             ccCHHHHHH--------HHhC-CCeEEEcCChhhHhcCCCCCcEEeccccccCC-----CCCCCHHHHHH-----HHhcC
Q 029984           74 SVPVRVAHE--------LLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEE-----VSTRF  134 (184)
Q Consensus        74 ~i~~~~~~~--------~~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~-----~~~~l  134 (184)
                      .++++++.+        .+++ +++|||||++.||..||||||+|+|+..+...     +....++.+..     .....
T Consensus         2 ~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (142)
T 2ouc_A            2 IIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRI   81 (142)
T ss_dssp             EECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHHHHHHHHTTSSCHHHHHHTTSCTTHHHHH
T ss_pred             ccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHHHHHHhhcCCcchhhhCCChhhhHHHhcc
Confidence            467778777        4443 58999999999999999999999998532110     00000111100     00000


Q ss_pred             CCCCeEEEEcCCChhH---------HHHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          135 RKHDEIIVGCQSGKRS---------MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       135 ~~~~~ivv~c~~g~rs---------~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                       ++++|||||++|.++         ..++..|...|| +|++|+||+.+|.++|.++.
T Consensus        82 -~~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~~~w~~~g~~~~  137 (142)
T 2ouc_A           82 -FSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNHENLC  137 (142)
T ss_dssp             -HHSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHHHHHTTTCGGGE
T ss_pred             -CCCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCHHHHHHHCHHhh
Confidence             267899999998874         467788999999 99999999999999998763

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.84  E-value=4.4e-21  Score=158.84  Aligned_cols=110  Identities=16%  Similarity=0.077  Sum_probs=91.9

Q ss_pred             CcccCHHHHHHHHhCCCeEEEcCC--------hhhHhcCCCCCcEEecccc-ccC-------CCCCCCHHHHHHHHh--c
Q 029984           72 PTSVPVRVAHELLQAGHRYLDVRT--------PEEFSAGHATGAINVPYMY-RVG-------SGMTKNLKFVEEVST--R  133 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~~~~liDvR~--------~~e~~~ghIpgAi~ip~~~-~~~-------~~~~~~~~~~~~~~~--~  133 (184)
                      ...++++++.+++++ ++|||||+        +.||..||||||+|||+.. +..       .+.+...+.+...+.  .
T Consensus        13 ~~~Is~~el~~~l~~-~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~~~~~~~~lp~~~~f~~~l~~~g   91 (373)
T 1okg_A           13 KVFLDPSEVADHLAE-YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPXAEFIDWCMANG   91 (373)
T ss_dssp             CCEECHHHHTTCGGG-SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHTT
T ss_pred             CcEEcHHHHHHHcCC-cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccccCCccccCCCHHHHHHHHHHcC
Confidence            567899999888777 89999998        6999999999999999974 322       234555566665554  4


Q ss_pred             CCCCCeEEEEc-CCChhHH-HHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          134 FRKHDEIIVGC-QSGKRSM-MAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       134 l~~~~~ivv~c-~~g~rs~-~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      ++++++||||| .+|.++. ++++.|+..|| +|++|+||+.+|+++|+|++
T Consensus        92 i~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~~g~pv~  142 (373)
T 1okg_A           92 MAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEME  142 (373)
T ss_dssp             CSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEE
T ss_pred             CCCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHHHHHhhcCCcc
Confidence            67899999999 6788886 99999999999 99999999999999999875

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.83  E-value=9.2e-21  Score=159.25  Aligned_cols=112  Identities=19%  Similarity=0.262  Sum_probs=96.9

Q ss_pred             cccCHHHHHHHHh---------CCCeEEEcC--ChhhHhcCCCCCcEEeccccccC--CCCCCCHHHHHHHHhc--CCCC
Q 029984           73 TSVPVRVAHELLQ---------AGHRYLDVR--TPEEFSAGHATGAINVPYMYRVG--SGMTKNLKFVEEVSTR--FRKH  137 (184)
Q Consensus        73 ~~i~~~~~~~~~~---------~~~~liDvR--~~~e~~~ghIpgAi~ip~~~~~~--~~~~~~~~~~~~~~~~--l~~~  137 (184)
                      ..++.+++.++++         ++.+|||+|  ++.||..||||||+|+|+..+..  .+.+.+.+.++..+..  ++++
T Consensus       124 ~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~  203 (423)
T 2wlr_A          124 QLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHD  203 (423)
T ss_dssp             GEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEETTTTEECCHHHHHHHHHHTTCCTT
T ss_pred             cccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhccCCCCCCCCHHHHHHHHHHcCCCCC
Confidence            4678888888876         247899999  99999999999999999976543  3566777788877754  6789


Q ss_pred             CeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          138 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       138 ~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      ++||+||++|.+|..+++.|+.+||++|++|+|||.+|...|+|+++
T Consensus       204 ~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~~g~pv~~  250 (423)
T 2wlr_A          204 TTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVER  250 (423)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHHHHHTTCCCBC
T ss_pred             CeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHHHhhCCCCccc
Confidence            99999999999999999999999999999999999999999999863

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.83  E-value=9.3e-22  Score=162.89  Aligned_cols=99  Identities=17%  Similarity=0.295  Sum_probs=82.7

Q ss_pred             hCCCeEEEcCChhhHh-----------cCCCCCcEEecccccc--C-CCC-CCCHHHHHHHHhcC----CC---CCeEEE
Q 029984           85 QAGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRV--G-SGM-TKNLKFVEEVSTRF----RK---HDEIIV  142 (184)
Q Consensus        85 ~~~~~liDvR~~~e~~-----------~ghIpgAi~ip~~~~~--~-~~~-~~~~~~~~~~~~~l----~~---~~~ivv  142 (184)
                      .++.+|||||++.||.           .||||||+|||+.++.  . .+. +.+.+.++..+..+    ++   +++||+
T Consensus       172 ~~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~~~~l~~~~~~~~~gi~~~~~d~~ivv  251 (373)
T 1okg_A          172 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVF  251 (373)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEE
T ss_pred             ccCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhhccCCCCCccCCHHHHHHHHHhhhcCCCcccCCCCEEE
Confidence            4568899999999999           9999999999997654  2 233 56677787777654    77   899999


Q ss_pred             EcCCChhHHHHHHHHHHccCCCeeeccccHHHHHh-CCCCCC
Q 029984          143 GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-NGLPTE  183 (184)
Q Consensus       143 ~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~-~g~p~~  183 (184)
                      ||++|.||..++..|..+||++|++|+|||.+|.. .|+|++
T Consensus       252 yC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~  293 (373)
T 1okg_A          252 SCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIM  293 (373)
T ss_dssp             ECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHH
T ss_pred             ECCchHHHHHHHHHHHHcCCCCeeEeCChHHHHhcCCCCCcc
Confidence            99999999999999999999999999999999987 577653

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.83  E-value=1.3e-20  Score=162.76  Aligned_cols=101  Identities=25%  Similarity=0.347  Sum_probs=86.8

Q ss_pred             CcccCHHHHHHHHhC--CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC-CCCCeEEEEcCCCh
Q 029984           72 PTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEIIVGCQSGK  148 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ivv~c~~g~  148 (184)
                      ...++++++.+++.+  +.+|||||++.||..||||||+|||+.           ++........ +++++|||||++|.
T Consensus         6 ~~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAv~ip~~-----------~~~~~~~~l~~~~~~~iVvyc~~g~   74 (539)
T 1yt8_A            6 IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS-----------RLELEIHARVPRRDTPITVYDDGEG   74 (539)
T ss_dssp             CEEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGG-----------GHHHHHHHHSCCTTSCEEEECSSSS
T ss_pred             CcccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCCEECCHH-----------HHHHHHHhhCCCCCCeEEEEECCCC
Confidence            456889999988863  589999999999999999999999984           2222332323 47899999999999


Q ss_pred             hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          149 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       149 rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      +|..+++.|+..||+||++|+||+.+|+++|+|++
T Consensus        75 ~s~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~  109 (539)
T 1yt8_A           75 LAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGELF  109 (539)
T ss_dssp             HHHHHHHHHHHTTCSSEEEETTHHHHHHHTTCCCB
T ss_pred             hHHHHHHHHHHcCCCceEEeCCCHHHHHhcCCCcc
Confidence            99999999999999999999999999999999985

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.82  E-value=4.9e-21  Score=142.28  Aligned_cols=108  Identities=22%  Similarity=0.315  Sum_probs=79.4

Q ss_pred             CCCcccCHHHHHHHHhC--------CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC-------
Q 029984           70 GVPTSVPVRVAHELLQA--------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-------  134 (184)
Q Consensus        70 ~~~~~i~~~~~~~~~~~--------~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l-------  134 (184)
                      .....|+++++.+++++        +++|||||+ .||..||||||+|||+..+..     ....+..+...+       
T Consensus        28 ~~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~-----~~~~l~~l~~~~~~~~~~~  101 (169)
T 3f4a_A           28 TNVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQ-----DPEYLRELKHRLLEKQADG  101 (169)
T ss_dssp             CSEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHH-----CHHHHHHHHHHHHHHHHTS
T ss_pred             CCCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhc-----ccccHHHHHHHHHhhcccc
Confidence            34567999999998864        378999999 999999999999999853211     001122222211       


Q ss_pred             CCCCeEEEEcCCC-hhHHHHHHHHHH----cc--CCCeeeccccHHHHHhCCCCCC
Q 029984          135 RKHDEIIVGCQSG-KRSMMAATDLLN----AG--FAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       135 ~~~~~ivv~c~~g-~rs~~~~~~L~~----~G--~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      .++++|||||.+| .|+..++..|.+    .|  +.+|++|+|||.+|.++|.|.+
T Consensus       102 ~~~~~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~~~~~~  157 (169)
T 3f4a_A          102 RGALNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVYGDDE  157 (169)
T ss_dssp             SSCEEEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHHHTTCT
T ss_pred             cCCCeEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHcCCcc
Confidence            1247999999986 799888876654    36  5789999999999999877654

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.80  E-value=2.6e-20  Score=135.87  Aligned_cols=105  Identities=21%  Similarity=0.194  Sum_probs=77.0

Q ss_pred             CcccCHHHHHHHHhC---CCeEEEcCChhhHhcCCCCCcEEecccccc------C----CCCCCCHHHHHHHHhcCCCCC
Q 029984           72 PTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRV------G----SGMTKNLKFVEEVSTRFRKHD  138 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~---~~~liDvR~~~e~~~ghIpgAi~ip~~~~~------~----~~~~~~~~~~~~~~~~l~~~~  138 (184)
                      ...++++++.+++++   +++|||||++.||..||||||+|||+..+.      .    ...+..+ .....+..+++++
T Consensus        15 ~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~   93 (154)
T 1hzm_A           15 AISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRG-EDRDRFTRRCGTD   93 (154)
T ss_dssp             SSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTS-HHHHHHHHSTTSS
T ss_pred             ccccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCceEeCccHHHHhhhhcCcccHHHhCCCH-HHHHHHhccCCCC
Confidence            445677777777653   689999999999999999999999986432      1    0122222 2223344567889


Q ss_pred             eEEEEcCCChhH-------HHHHHHHHHc---cCCCeeeccccHHHHHhC
Q 029984          139 EIIVGCQSGKRS-------MMAATDLLNA---GFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       139 ~ivv~c~~g~rs-------~~~~~~L~~~---G~~~v~~l~GG~~~W~~~  178 (184)
                      +|||||.+|.++       ..+++.|+.+   ||+ |++|+||+.+|..+
T Consensus        94 ~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~~~  142 (154)
T 1hzm_A           94 TVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCR-AFYLEGGFSKFQAE  142 (154)
T ss_dssp             CEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCC-CEECCCCHHHHHHH
T ss_pred             eEEEEeCCCCccccccccchHHHHHHHHHHHCCCc-eEEEcChHHHHHHH
Confidence            999999988765       3446667655   998 99999999999875

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.79  E-value=1e-19  Score=158.18  Aligned_cols=94  Identities=26%  Similarity=0.504  Sum_probs=84.9

Q ss_pred             cccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHH
Q 029984           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (184)
Q Consensus        73 ~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~  152 (184)
                      ..++++++.++++++.+|||||++.||..||||||+|||+            +.+......++++++||+||.+|.||..
T Consensus       489 ~~i~~~~~~~~~~~~~~~iDvR~~~e~~~ghi~ga~~ip~------------~~l~~~~~~l~~~~~iv~~C~~g~rs~~  556 (588)
T 3ics_A          489 DTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIPL------------DELRDRLEEVPVDKDIYITCQLGMRGYV  556 (588)
T ss_dssp             CEECTTTHHHHHHTTCEEEECSCGGGGGGCBCTTEEECCH------------HHHTTCGGGSCSSSCEEEECSSSHHHHH
T ss_pred             ceecHHHHHHHhcCCCEEEEcCCHHHHhcCCCCCCEECCH------------HHHHHHHhhCCCCCeEEEECCCCcHHHH
Confidence            4578888888888889999999999999999999999998            4556666678899999999999999999


Q ss_pred             HHHHHHHccCCCeeeccccHHHHHhCC
Q 029984          153 AATDLLNAGFAGITDIAGGFAAWRQNG  179 (184)
Q Consensus       153 ~~~~L~~~G~~~v~~l~GG~~~W~~~g  179 (184)
                      +++.|++.||+ |++|+||+.+|+++.
T Consensus       557 a~~~l~~~G~~-v~~l~GG~~~w~~~~  582 (588)
T 3ics_A          557 AARMLMEKGYK-VKNVDGGFKLYGTVL  582 (588)
T ss_dssp             HHHHHHHTTCC-EEEETTHHHHHHHHC
T ss_pred             HHHHHHHcCCc-EEEEcchHHHHHhhh
Confidence            99999999998 999999999998763

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.79  E-value=3.4e-19  Score=130.79  Aligned_cols=105  Identities=19%  Similarity=0.248  Sum_probs=77.1

Q ss_pred             CCCcccCHHHHHHHHhC---------CCeEEEcCChhhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHH----
Q 029984           70 GVPTSVPVRVAHELLQA---------GHRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVS----  131 (184)
Q Consensus        70 ~~~~~i~~~~~~~~~~~---------~~~liDvR~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~----  131 (184)
                      .....++++++.+++++         +.+|||||++.||..||||||+|+|+..+.     ..+...    +....    
T Consensus         8 ~~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~~~~~~~~~~----~~~~~~~~~   83 (158)
T 3tg1_B            8 ASIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKIT----VLDLISCRE   83 (158)
T ss_dssp             ---CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHHHHHTTSSCC----HHHHTCCCC
T ss_pred             CCCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHHhhhhcCccc----HHhhcCCHH
Confidence            44567899999998872         489999999999999999999999996331     110000    00000    


Q ss_pred             --hcC--CCCCeEEEEcCCC---------hhHHHHHHHHHHccCCCeeeccccHHHHHhCC
Q 029984          132 --TRF--RKHDEIIVGCQSG---------KRSMMAATDLLNAGFAGITDIAGGFAAWRQNG  179 (184)
Q Consensus       132 --~~l--~~~~~ivv~c~~g---------~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g  179 (184)
                        ..+  .++++|||||.+|         .++..++..|...|| +|++|+|||.+|.++.
T Consensus        84 ~~~~~~~~~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~-~v~~L~GG~~~W~~~~  143 (158)
T 3tg1_B           84 GKDSFKRIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNH  143 (158)
T ss_dssp             SSCSSTTTTTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTC-CEEEETTHHHHHTSSC
T ss_pred             HHHHHhccCCCeEEEEECCCCcccccCcchHHHHHHHHHHhCCC-cEEEeCCcHHHHHHHh
Confidence              001  2478999999998         468899999999999 6999999999997753

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.79  E-value=3.8e-20  Score=159.94  Aligned_cols=91  Identities=27%  Similarity=0.477  Sum_probs=77.2

Q ss_pred             cCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHH
Q 029984           75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAA  154 (184)
Q Consensus        75 i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~  154 (184)
                      ++++++.++ +++++|||||++.||..+|||||+|||+.            .+......++++++||+||++|.||..++
T Consensus       475 i~~~~~~~~-~~~~~~iDvR~~~e~~~~~i~ga~~ip~~------------~l~~~~~~~~~~~~iv~~c~~g~rs~~a~  541 (565)
T 3ntd_A          475 IHFDQIDNL-SEDQLLLDVRNPGELQNGGLEGAVNIPVD------------ELRDRMHELPKDKEIIIFSQVGLRGNVAY  541 (565)
T ss_dssp             ECTTTTTSC-CTTEEEEECSCGGGGGGCCCTTCEECCGG------------GTTTSGGGSCTTSEEEEECSSSHHHHHHH
T ss_pred             eeHHHHHhC-CCCcEEEEeCCHHHHhcCCCCCcEECCHH------------HHHHHHhhcCCcCeEEEEeCCchHHHHHH
Confidence            344444443 44578999999999999999999999984            33444556889999999999999999999


Q ss_pred             HHHHHccCCCeeeccccHHHHHhCC
Q 029984          155 TDLLNAGFAGITDIAGGFAAWRQNG  179 (184)
Q Consensus       155 ~~L~~~G~~~v~~l~GG~~~W~~~g  179 (184)
                      +.|++.|| +|++|+||+.+|+++|
T Consensus       542 ~~l~~~G~-~v~~l~gG~~~w~~~g  565 (565)
T 3ntd_A          542 RQLVNNGY-RARNLIGGYRTYKFAS  565 (565)
T ss_dssp             HHHHHTTC-CEEEETTHHHHHHHTC
T ss_pred             HHHHHcCC-CEEEEcChHHHHHhCc
Confidence            99999999 9999999999999876

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.76  E-value=3e-18  Score=139.28  Aligned_cols=108  Identities=19%  Similarity=0.337  Sum_probs=83.9

Q ss_pred             ccCHHHHHHHHhCC-----CeEEEcCChhhHh-----------cCCCCCcEEeccccccCC-C-CCC-CHHHHHHHH---
Q 029984           74 SVPVRVAHELLQAG-----HRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGS-G-MTK-NLKFVEEVS---  131 (184)
Q Consensus        74 ~i~~~~~~~~~~~~-----~~liDvR~~~e~~-----------~ghIpgAi~ip~~~~~~~-~-~~~-~~~~~~~~~---  131 (184)
                      .++.+++.+.++++     .+|||+|++++|.           .||||||+|+|+..++.. + .+. ..+.+...+   
T Consensus       185 v~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~~~~~~~~~e~l~~~l~~~  264 (327)
T 3utn_X          185 IVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPETKTYPEAGEAIHATLEKA  264 (327)
T ss_dssp             EECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTTTCCCCCTTHHHHHHHHHH
T ss_pred             eecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCCCCCCCCcHHHHHHHHHHH
Confidence            35677777777653     6899999999996           599999999999776543 2 222 223332222   


Q ss_pred             -----hcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCC
Q 029984          132 -----TRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP  181 (184)
Q Consensus       132 -----~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p  181 (184)
                           ..++++++||+||++|.+|+..+..|+.+||+++++|+|+|.+|.....|
T Consensus       265 ~~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsEW~~r~~p  319 (327)
T 3utn_X          265 LKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEWVLKSGP  319 (327)
T ss_dssp             HHHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHCG
T ss_pred             HHHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHHhccccCC
Confidence                 24678999999999999999999999999999999999999999875433

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.75  E-value=1.5e-18  Score=134.55  Aligned_cols=92  Identities=17%  Similarity=0.123  Sum_probs=72.6

Q ss_pred             CCCeEEEcCChhhHhcCCCCCcEEeccc--cccCC---CCCCCHHHHHHHHhcCCCCCeEEEEcCCCh-hHHHHHHHHHH
Q 029984           86 AGHRYLDVRTPEEFSAGHATGAINVPYM--YRVGS---GMTKNLKFVEEVSTRFRKHDEIIVGCQSGK-RSMMAATDLLN  159 (184)
Q Consensus        86 ~~~~liDvR~~~e~~~ghIpgAi~ip~~--~~~~~---~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~-rs~~~~~~L~~  159 (184)
                      ++.+|||+|++.||..||||||+|+|+.  .+...   +++.+.+.+...+..++.+++|||||++|. +|..+++.|+ 
T Consensus         5 ~~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyc~~g~~~s~~a~~~L~-   83 (230)
T 2eg4_A            5 EDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLREEAELKALEGGLTELFQTLGLRSPVVLYDEGLTSRLCRTAFFLG-   83 (230)
T ss_dssp             TTCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCCSHHHHHHHHHHHHHHHHHTTCCSSEEEECSSSCHHHHHHHHHHH-
T ss_pred             CCEEEEECCChhhHhhCcCCCCEECCccchhcccCCCCCcCCCHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHHHH-
Confidence            4588999999999999999999999985  32210   011122455666666666899999999988 9999999999 


Q ss_pred             ccCCCeeeccccHHHHHhCCCCCC
Q 029984          160 AGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       160 ~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      .||++|++|+||   |.+  +|++
T Consensus        84 ~G~~~v~~l~GG---W~~--~p~~  102 (230)
T 2eg4_A           84 LGGLEVQLWTEG---WEP--YATE  102 (230)
T ss_dssp             HTTCCEEEECSS---CGG--GCCB
T ss_pred             cCCceEEEeCCC---Ccc--Cccc
Confidence            999999999999   876  6663

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.74  E-value=1.5e-19  Score=153.69  Aligned_cols=86  Identities=33%  Similarity=0.475  Sum_probs=0.0

Q ss_pred             HHHHHh-CCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHH
Q 029984           80 AHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL  158 (184)
Q Consensus        80 ~~~~~~-~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~  158 (184)
                      +.++++ ++.+|||||++.||..||||||+|+|+.            .+......++++++||+||.+|.||..++..|+
T Consensus       379 ~~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~iv~~C~~G~rs~~a~~~L~  446 (466)
T 3r2u_A          379 HSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHG------------KLLETDLPFNKNDVIYVHCQSGIRSSIAIGILE  446 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhCCCcEEEEeCCHHHHhcCcCCCCEECCHH------------HHHHHHhhCCCCCeEEEECCCChHHHHHHHHHH
Confidence            334443 3478999999999999999999999983            445555668889999999999999999999999


Q ss_pred             HccCCCeeeccccHHHHHh
Q 029984          159 NAGFAGITDIAGGFAAWRQ  177 (184)
Q Consensus       159 ~~G~~~v~~l~GG~~~W~~  177 (184)
                      +.||++|++|+|||.+|++
T Consensus       447 ~~G~~~v~~l~GG~~~W~~  465 (466)
T 3r2u_A          447 HKGYHNIINVNEGYKDIQL  465 (466)
T ss_dssp             -------------------
T ss_pred             HcCCCCEEEecChHHHHhh
Confidence            9999999999999999975

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.72  E-value=1.6e-18  Score=147.39  Aligned_cols=121  Identities=17%  Similarity=0.156  Sum_probs=92.5

Q ss_pred             CCccccccccccCcccc----cCCCCcccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHH
Q 029984           51 SKILSFCPKASLRGNLE----AVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF  126 (184)
Q Consensus        51 ~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~  126 (184)
                      |.|.......|..++..    ..+....++++++++++.++ +|||+|++.||..||||||+|+|+.          ..+
T Consensus       247 p~~~~~~~~~N~~G~~~~~~~~~~~~~~is~~~l~~~l~~~-~iiD~R~~~~y~~ghIpGA~~i~~~----------~~~  315 (474)
T 3tp9_A          247 PIYFARMKLVNKVGPRLLAELGAPERVDLPPERVRAWREGG-VVLDVRPADAFAKRHLAGSLNIPWN----------KSF  315 (474)
T ss_dssp             CTTHHHHHHHHHHCCCCHHHHCCCEECCCCGGGHHHHHHTS-EEEECSCHHHHHHSEETTCEECCSS----------TTH
T ss_pred             CccHHHHHhhhccCcccccccccCCCceeCHHHHHHHhCCC-EEEECCChHHHhccCCCCeEEECcc----------hHH
Confidence            33433333445444332    24456678999999998887 9999999999999999999999984          123


Q ss_pred             HHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          127 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       127 ~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      ........+++++|||||+.|. +..+++.|+..||++|+.|.+|+.+|+.+|.|++
T Consensus       316 ~~~~~~l~~~~~~vvvy~~~~~-~~~~~~~L~~~G~~~v~~~l~G~~~W~~~g~~~~  371 (474)
T 3tp9_A          316 VTWAGWLLPADRPIHLLAADAI-APDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVA  371 (474)
T ss_dssp             HHHHHHHCCSSSCEEEECCTTT-HHHHHHHHHHTTCCCEEEEECGGGGTTCCGGGEE
T ss_pred             HHHHHhcCCCCCeEEEEECCCc-HHHHHHHHHHcCCcceEEecCcHHHHHhcccccc
Confidence            3333333478899999999876 5679999999999999986779999999887754

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.72  E-value=1.9e-17  Score=121.48  Aligned_cols=110  Identities=10%  Similarity=0.103  Sum_probs=73.0

Q ss_pred             CCcccCHHHHHHHHhC---CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCC------CCHHHHHHHHhcCCCCCeEE
Q 029984           71 VPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT------KNLKFVEEVSTRFRKHDEII  141 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~---~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~------~~~~~~~~~~~~l~~~~~iv  141 (184)
                      ....++++++.+++++   +.+|||||++.||..||||||+|||+..+. .+..      .-++.....+....+.+.||
T Consensus        18 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAinip~~~l~-~~~~~~~l~~~lp~~~~~l~~~~~~~~~VV   96 (157)
T 2gwf_A           18 GSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAIS-PGVTASWIEAHLPDDSKDTWKKRGNVEYVV   96 (157)
T ss_dssp             -CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCC-TTCCHHHHHHTSCHHHHHHHHTTTTSSEEE
T ss_pred             CCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCcccCHHHcC-CCCcHHHHHHHcCHHHHHHHHhcCCCCEEE
Confidence            3456889999988864   578999999999999999999999986432 1110      00111222233333455689


Q ss_pred             EEcCCChh----HHHHHHHHH----Hc----cCC-CeeeccccHHHHHhCCCCC
Q 029984          142 VGCQSGKR----SMMAATDLL----NA----GFA-GITDIAGGFAAWRQNGLPT  182 (184)
Q Consensus       142 v~c~~g~r----s~~~~~~L~----~~----G~~-~v~~l~GG~~~W~~~g~p~  182 (184)
                      +||.++.+    +..+++.|.    +.    |+. +|++|+||+.+|++. +|.
T Consensus        97 vy~~~~~~~~~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~  149 (157)
T 2gwf_A           97 LLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQ  149 (157)
T ss_dssp             EECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CGG
T ss_pred             EEcCCCCccccCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH-Chh
Confidence            99987643    234555554    22    454 399999999999874 654

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.72  E-value=1.8e-17  Score=121.42  Aligned_cols=112  Identities=11%  Similarity=0.121  Sum_probs=74.4

Q ss_pred             CCCCcccCHHHHHHHHhC---CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCC------CCHHHHHHHHhcCCCCCe
Q 029984           69 VGVPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT------KNLKFVEEVSTRFRKHDE  139 (184)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~---~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~------~~~~~~~~~~~~l~~~~~  139 (184)
                      ......++++++.+++++   +.+|||||++.||..||||||+|||+..+. .+..      .-++.....+....+.+.
T Consensus        11 ~~~~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gainip~~~~~-~~~~~~~l~~~lp~~~~~~~~~~~~~~~   89 (157)
T 1whb_A           11 TKEKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAIS-PGVTASWIEAHLPDDSKDTWKKRGNVEY   89 (157)
T ss_dssp             CCCCSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCEEECSSSCC-TTCCHHHHHHSCCTTHHHHHHGGGTSSE
T ss_pred             cccCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCcccCHHHcc-CCCcHHHHHHHCChHHHHHHHhcCCCCE
Confidence            345567899999988864   578999999999999999999999985332 1110      000111122222223456


Q ss_pred             EEEEcCCChh----HHHHHHHHHHc--------cCC-CeeeccccHHHHHhCCCCC
Q 029984          140 IIVGCQSGKR----SMMAATDLLNA--------GFA-GITDIAGGFAAWRQNGLPT  182 (184)
Q Consensus       140 ivv~c~~g~r----s~~~~~~L~~~--------G~~-~v~~l~GG~~~W~~~g~p~  182 (184)
                      ||+||..+.+    +..+++.|.+.        ||. +|++|+||+.+|.+. +|.
T Consensus        90 VVvy~~~~~~~~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~  144 (157)
T 1whb_A           90 VVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQ  144 (157)
T ss_dssp             EEEECSSCCGGGCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH-CGG
T ss_pred             EEEECCCCCccccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH-Chh
Confidence            8999987643    34556666632        454 399999999999874 654

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.71  E-value=6.6e-17  Score=131.41  Aligned_cols=112  Identities=14%  Similarity=0.098  Sum_probs=91.2

Q ss_pred             CCcccCHHHHHHHHhCC----CeEEEcC--------C-hhhH-hcCCCCCcEEecccccc-----CCCCCCCHHHHHHHH
Q 029984           71 VPTSVPVRVAHELLQAG----HRYLDVR--------T-PEEF-SAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVS  131 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~~----~~liDvR--------~-~~e~-~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~  131 (184)
                      .-..|+++++.+++..+    +++||++        + ..|| +++|||||++++++.+.     ..+++.+++.++..+
T Consensus        26 ~~~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~~~~~ph~LP~~~~f~~~l  105 (327)
T 3utn_X           26 LFDLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKSPYPHMFPTKKVFDDAM  105 (327)
T ss_dssp             SCEEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCTTSSSTTCCCCHHHHHHHH
T ss_pred             cccccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCCCCCCCCCCcCHHHHHHHH
Confidence            34469999999988632    6789985        2 4577 68999999999986543     235677888888877


Q ss_pred             hc--CCCCCeEEEEcCCCh-hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          132 TR--FRKHDEIIVGCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       132 ~~--l~~~~~ivv~c~~g~-rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      ..  ++++++||||++.+. .|.+++|+|+..|+++|++|+|| .+|.++|+|++
T Consensus       106 ~~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~~~g~p~~  159 (327)
T 3utn_X          106 SNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLNNF-NQYREFKYPLD  159 (327)
T ss_dssp             HHTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCSEEEEESCH-HHHHHTTCCCB
T ss_pred             HHcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCCceeecccH-HHHHHhCCCcc
Confidence            76  588999999998654 68899999999999999999877 89999999986

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.42  E-value=2.5e-13  Score=115.27  Aligned_cols=81  Identities=21%  Similarity=0.294  Sum_probs=63.3

Q ss_pred             hCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCC
Q 029984           85 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG  164 (184)
Q Consensus        85 ~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~  164 (184)
                      +++++|||+|++.+|..||||||+|+|+.          ..+..+....++++++||+||+ +.++.++++.|+..||++
T Consensus       294 ~~~~~ilD~R~~~~y~~gHIpGAv~ip~~----------~~~~~~~~~~~~~~~~vvly~~-~~~a~~a~~~L~~~G~~~  362 (466)
T 3r2u_A          294 NTNRLTFDLRSKEAYHGGHIEGTINIPYD----------KNFINQIGWYLNYDQEINLIGD-YHLVSKATHTLQLIGYDD  362 (466)
T ss_dssp             CCCSEEEECSCHHHHHHSCCTTCEECCSS----------TTHHHHHTTTCCTTSCEEEESC-HHHHHHHHHHHHTTTCCC
T ss_pred             CCCeEEEECCCHHHHhhCCCCCcEECCcc----------HHHHHHHHhccCCCCeEEEEEC-CchHHHHHHHhhhhhccc
Confidence            35689999999999999999999999984          1233444444688999999999 558999999999999999


Q ss_pred             eee-ccccHHHHH
Q 029984          165 ITD-IAGGFAAWR  176 (184)
Q Consensus       165 v~~-l~GG~~~W~  176 (184)
                      |+. ++|+...|.
T Consensus       363 v~~~l~g~~~~~~  375 (466)
T 3r2u_A          363 IAGYQLPQSKIQT  375 (466)
T ss_dssp             EEEEECCC-----
T ss_pred             ccccccCcccccH
Confidence            987 677665543

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=98.26  E-value=2.7e-06  Score=61.50  Aligned_cols=83  Identities=18%  Similarity=0.188  Sum_probs=52.6

Q ss_pred             CHHHHHHHHhCC-CeEEEcCChhh------------HhcC-CCCCcEEeccccccCCCCCCCHHHHHHHHhcC-CCCCeE
Q 029984           76 PVRVAHELLQAG-HRYLDVRTPEE------------FSAG-HATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEI  140 (184)
Q Consensus        76 ~~~~~~~~~~~~-~~liDvR~~~e------------~~~g-hIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l-~~~~~i  140 (184)
                      +.+++..+.+.+ ..|||+|++.|            |... +|.|.+|+|....     ....+.+......+ ..+.+|
T Consensus        31 ~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~~-----~~~~~~~~~~~~~l~~~~~pV  105 (156)
T 2f46_A           31 TKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTAR-----DIQKHDVETFRQLIGQAEYPV  105 (156)
T ss_dssp             CGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCTT-----TCCHHHHHHHHHHHHTSCSSE
T ss_pred             CHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCCC-----CCCHHHHHHHHHHHHhCCCCE
Confidence            445666665555 67999997765            3334 5998999998421     12234444444433 347899


Q ss_pred             EEEcCCChhHHHHHHHH-HHccCC
Q 029984          141 IVGCQSGKRSMMAATDL-LNAGFA  163 (184)
Q Consensus       141 vv~c~~g~rs~~~~~~L-~~~G~~  163 (184)
                      +|||.+|.|+..++..+ ...|++
T Consensus       106 lvHC~sG~Rs~~l~al~l~~~g~~  129 (156)
T 2f46_A          106 LAYCRTGTRCSLLWGFRRAAEGMP  129 (156)
T ss_dssp             EEECSSSHHHHHHHHHHHHHTTCC
T ss_pred             EEECCCCCCHHHHHHHHHHHcCCC
Confidence            99999999987554332 345653

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A

Probab=95.92  E-value=0.014  Score=40.87  Aligned_cols=83  Identities=12%  Similarity=0.073  Sum_probs=47.7

Q ss_pred             HHHHHHHHhCC-CeEEEcCChhhHhcCCCCCc--EEeccccccCCCCCCCHHHHHHHHhc----CCCCCeEEEEcCCCh-
Q 029984           77 VRVAHELLQAG-HRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSGK-  148 (184)
Q Consensus        77 ~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ivv~c~~g~-  148 (184)
                      .++++.+.+.+ ..|||+|+..|......+|-  +++|+.+.    .....+.+......    +..+.+|+|+|..|. 
T Consensus        25 ~~~~~~L~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~  100 (150)
T 4erc_A           25 PAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDF----CPPAPDQIDRFVQIVDEANARGEAVGVHCALGFG  100 (150)
T ss_dssp             HHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTT----SCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSH
T ss_pred             HHHHHHHHHCCCCEEEEcCCCCCCcccccCCceEEEEecCCC----CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence            56666666667 57999998766544344443  45665322    11223333333322    345789999999886 


Q ss_pred             hHHHHH-H-HHHHccCC
Q 029984          149 RSMMAA-T-DLLNAGFA  163 (184)
Q Consensus       149 rs~~~~-~-~L~~~G~~  163 (184)
                      |+..++ . .+...|++
T Consensus       101 Rsg~~~a~~l~~~~~~~  117 (150)
T 4erc_A          101 RTGTMLACYLVKERGLA  117 (150)
T ss_dssp             HHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            776433 3 33446663

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}

Probab=95.09  E-value=0.036  Score=38.64  Aligned_cols=83  Identities=11%  Similarity=0.065  Sum_probs=46.3

Q ss_pred             CHHHHHHHHhCC-CeEEEcCChhhHhcCCCC--CcEEeccccccCCCCCCCHHHHHHHHh----cCCCCCeEEEEcCCCh
Q 029984           76 PVRVAHELLQAG-HRYLDVRTPEEFSAGHAT--GAINVPYMYRVGSGMTKNLKFVEEVST----RFRKHDEIIVGCQSGK  148 (184)
Q Consensus        76 ~~~~~~~~~~~~-~~liDvR~~~e~~~ghIp--gAi~ip~~~~~~~~~~~~~~~~~~~~~----~l~~~~~ivv~c~~g~  148 (184)
                      ..+.+..+.+.+ ..|||+|+..|+....++  +-+++|+.+..    ....+.+.....    .+..+.+|+|+|..|.
T Consensus        25 ~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~~~~d~~----~p~~~~~~~~~~~i~~~~~~~~~vlVHC~aG~  100 (151)
T 2img_A           25 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFC----PPAPDQIDRFVQIVDEANARGEAVGVHCALGF  100 (151)
T ss_dssp             SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTTC----CCCHHHHHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cHHHHHHHHHCCCCEEEECCCCCCCCHHHHhhCCeEEEeCCCCC----CCCHHHHHHHHHHHHHHHhCCCcEEEECCCCC
Confidence            445666666666 578999988665433333  24566663221    122233333222    2345789999999875


Q ss_pred             -hHHHHH-HHHHHc-cC
Q 029984          149 -RSMMAA-TDLLNA-GF  162 (184)
Q Consensus       149 -rs~~~~-~~L~~~-G~  162 (184)
                       |+..++ ..|... |+
T Consensus       101 ~Rsg~~~~~~l~~~~~~  117 (151)
T 2img_A          101 GRTGTMLACYLVKERGL  117 (151)
T ss_dssp             SHHHHHHHHHHHHHHCC
T ss_pred             ChHHHHHHHHHHHHhCc
Confidence             766543 333333 65

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=94.09  E-value=0.0072  Score=44.09  Aligned_cols=22  Identities=18%  Similarity=0.451  Sum_probs=20.2

Q ss_pred             CeEEEcCChhhHhcCCCCCcEEeccc
Q 029984           88 HRYLDVRTPEEFSAGHATGAINVPYM  113 (184)
Q Consensus        88 ~~liDvR~~~e~~~ghIpgAi~ip~~  113 (184)
                      .++||||++.||.    |||+|||..
T Consensus       122 ~~liDvRe~~E~~----pgA~~iprg  143 (168)
T 1v8c_A          122 GAVVRFREVEPLK----VGSLSIPQL  143 (168)
T ss_dssp             TEEEEEEEEEEEE----ETTEEEEEE
T ss_pred             eEEEECCChhhcC----CCCEEcChh
Confidence            3899999999999    999999974

>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}

Probab=93.97  E-value=0.092  Score=36.56  Aligned_cols=80  Identities=16%  Similarity=0.180  Sum_probs=41.2

Q ss_pred             HHHHHhCC-CeEEEcCChhhHhcCCCCC---cEEeccccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCC-hhHHHH
Q 029984           80 AHELLQAG-HRYLDVRTPEEFSAGHATG---AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMMA  153 (184)
Q Consensus        80 ~~~~~~~~-~~liDvR~~~e~~~ghIpg---Ai~ip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~rs~~~  153 (184)
                      +..+.+.+ ..|||+|+..+   ...|+   -+++|..+......... ++.++.+...+..+.+|+|+|..| .||..+
T Consensus        22 ~~~L~~~gi~~Vi~l~~~~~---~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~   98 (145)
T 2nt2_A           22 LEDLQNRGVRYILNVTREID---NFFPGVFEYHNIRVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHSKMGVSRSAST   98 (145)
T ss_dssp             HHHHHHTTEEEEEECCSSSC---CSCBTTBEEEECCCCSSTTCCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHH
T ss_pred             HHHHHHCCCCEEEEeCCCCc---cCCCCCcEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCeEEEECCCCCchHHHH
Confidence            34444556 56899997543   11232   25677642211111110 122222222234577999999988 588643


Q ss_pred             --HHHHHHccC
Q 029984          154 --ATDLLNAGF  162 (184)
Q Consensus       154 --~~~L~~~G~  162 (184)
                        +..+...|+
T Consensus        99 v~ayLm~~~~~  109 (145)
T 2nt2_A           99 VIAYAMKEYGW  109 (145)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhCC
Confidence              455555665

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A

Probab=93.85  E-value=0.11  Score=36.24  Aligned_cols=85  Identities=8%  Similarity=-0.025  Sum_probs=44.8

Q ss_pred             HHHHHHHhCC-CeEEEcCChhhHhc-------CCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcCCC
Q 029984           78 RVAHELLQAG-HRYLDVRTPEEFSA-------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSG  147 (184)
Q Consensus        78 ~~~~~~~~~~-~~liDvR~~~e~~~-------ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~~g  147 (184)
                      +++..+.+.+ ..|||+|+..|...       ..| .-+++|......+......+.+...+..+  ..+.+|+|+|..|
T Consensus        24 ~d~~~L~~~gi~~Vi~l~~~~e~~~~~~~~~~~gi-~~~~ipi~d~~~~~~~~~~~~~~~~~~~i~~~~~~~vlvHC~aG  102 (151)
T 1xri_A           24 ANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGI-RLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKRG  102 (151)
T ss_dssp             HHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTC-EEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECSSS
T ss_pred             cCHHHHHHCCCCEEEECCCCCcChhHHHHHHhcCC-eEEecccccccCccccCCHHHHHHHHHHHHcCCCCCEEEECCCC
Confidence            4444444445 67999998655321       112 23566653211111112233444444332  2467999999988


Q ss_pred             h-hHHHHH-HHHHHccCC
Q 029984          148 K-RSMMAA-TDLLNAGFA  163 (184)
Q Consensus       148 ~-rs~~~~-~~L~~~G~~  163 (184)
                      . |+..++ ..|...|++
T Consensus       103 ~~RTg~~~a~~l~~~g~~  120 (151)
T 1xri_A          103 KHRTGCLVGCLRKLQKWC  120 (151)
T ss_dssp             SSHHHHHHHHHHHHTTBC
T ss_pred             CCHHHHHHHHHHHHhCCC
Confidence            6 876654 444455653

>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*

Probab=93.45  E-value=0.2  Score=37.29  Aligned_cols=83  Identities=19%  Similarity=0.175  Sum_probs=44.0

Q ss_pred             CHHHHHHHHhCC-CeEEEcCChhhHhcCCCC---------C--cEEeccccccCCCCCCCHHHHHHHHh----cCCCCCe
Q 029984           76 PVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---------G--AINVPYMYRVGSGMTKNLKFVEEVST----RFRKHDE  139 (184)
Q Consensus        76 ~~~~~~~~~~~~-~~liDvR~~~e~~~ghIp---------g--Ai~ip~~~~~~~~~~~~~~~~~~~~~----~l~~~~~  139 (184)
                      ..+++..+.+.+ ..|||+|+..|...-.++         |  -+++|+.+..    ....+.+.....    .+..+.+
T Consensus        60 ~~~d~~~L~~~gi~~Vv~l~~~~E~~~~~~~~~~~~~~~~gi~~~~~pi~d~~----~p~~~~~~~~~~~i~~~~~~~~~  135 (212)
T 1fpz_A           60 VQKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGG----TPDIASCCEIMEELTTCLKNYRK  135 (212)
T ss_dssp             HHHHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCTTC----CCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCEEEEcCCHHHHHhcCCccHHHHHHHcCCEEEEecCCCCC----CCCHHHHHHHHHHHHHHHhCCCC
Confidence            345565555555 679999998765432111         2  2455553211    112222222222    2335779


Q ss_pred             EEEEcCCCh-hHHHHH-HHHHHc--cC
Q 029984          140 IIVGCQSGK-RSMMAA-TDLLNA--GF  162 (184)
Q Consensus       140 ivv~c~~g~-rs~~~~-~~L~~~--G~  162 (184)
                      |+|+|..|. |+..++ ..|...  |+
T Consensus       136 VlVHC~aG~gRTg~~~a~~L~~~~~g~  162 (212)
T 1fpz_A          136 TLIHSYGGLGRSCLVAACLLLYLSDTI  162 (212)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhccCC
Confidence            999999876 766543 444443  55

>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}

Probab=93.41  E-value=0.099  Score=37.24  Aligned_cols=80  Identities=20%  Similarity=0.292  Sum_probs=40.3

Q ss_pred             HHHhCC-CeEEEcCChhhHhcCCCCC--cEEeccccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCC-hhHHHH--H
Q 029984           82 ELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMMA--A  154 (184)
Q Consensus        82 ~~~~~~-~~liDvR~~~e~~~ghIpg--Ai~ip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~rs~~~--~  154 (184)
                      .+.+.+ ..|||+|+..+..  ...|  -+++|..+......... .+.++.+...+..+.+|+|+|..| .|+..+  +
T Consensus        32 ~L~~~gI~~Vi~l~~~~~~~--~~~~~~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~~~a  109 (164)
T 2hcm_A           32 LLVRAGITLCVNVSRQQPGP--RAPGVAELRVPVFDDPAEDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTA  109 (164)
T ss_dssp             HHHHTTEEEEEECSSSCCCC--CCTTCEEEECCCCSCTTSCCHHHHHHHHHHHHHHHHTTCEEEEEESSSSHHHHHHHHH
T ss_pred             HHHHCCCeEEEEcCCCCCCC--CCCCCEEEEEeCcCCCCchHHHHHHHHHHHHHHHHHcCCEEEEECCCCCchHHHHHHH
Confidence            344456 5689999865421  1122  25566532211111000 111111222234578999999988 587754  3


Q ss_pred             HHHHHccCC
Q 029984          155 TDLLNAGFA  163 (184)
Q Consensus       155 ~~L~~~G~~  163 (184)
                      ..+...|++
T Consensus       110 yLm~~~~~~  118 (164)
T 2hcm_A          110 YLMRHRGHS  118 (164)
T ss_dssp             HHHHHSCCC
T ss_pred             HHHHHhCCC
Confidence            555566763

>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}

Probab=92.91  E-value=0.2  Score=35.45  Aligned_cols=81  Identities=11%  Similarity=0.095  Sum_probs=39.8

Q ss_pred             HHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCC-hhHHHH--HHH
Q 029984           82 ELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMMA--ATD  156 (184)
Q Consensus        82 ~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~rs~~~--~~~  156 (184)
                      .+.+.+ ..|||+|+..+.....| .-+++|..+......... .+.++.+...+..+.+|+|+|..| .|+..+  +..
T Consensus        28 ~L~~~gI~~Vi~l~~~~~~~~~~i-~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~~~ayl  106 (160)
T 1yz4_A           28 QLGRNKITHIISIHESPQPLLQDI-TYLRIPVADTPEVPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYV  106 (160)
T ss_dssp             HHHHTTCCEEEEECSSCCCCCTTC-EEEEECCCSCTTSCGGGGHHHHHHHHHHHHHTTCCEEEEETTSSSHHHHHHHHHH
T ss_pred             HHHHCCCeEEEEccCCCCCccCCC-eEEEEECCCCCCccHHHHHHHHHHHHHHHHHcCCeEEEECCCCCchHHHHHHHHH
Confidence            333455 57899997643211111 125666632211111111 111222222223577999999988 587743  344


Q ss_pred             HHHccCC
Q 029984          157 LLNAGFA  163 (184)
Q Consensus       157 L~~~G~~  163 (184)
                      +...|++
T Consensus       107 m~~~~~~  113 (160)
T 1yz4_A          107 MTVTGLG  113 (160)
T ss_dssp             HHHHCCC
T ss_pred             HHHcCCC
Confidence            4556763

>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*

Probab=92.65  E-value=0.58  Score=36.88  Aligned_cols=42  Identities=17%  Similarity=0.203  Sum_probs=27.3

Q ss_pred             CcccCHHHHHHHHhCC-CeEEEcCChhhHhcC----CCCCc--EEeccc
Q 029984           72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAG----HATGA--INVPYM  113 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~g----hIpgA--i~ip~~  113 (184)
                      +..++.+++..+.+-+ -.|||.|++.|....    ..+|.  +|+|..
T Consensus        53 l~~lt~~d~~~L~~lGI~tVIDLR~~~E~~~~~pd~~~~Gi~~~~iPi~  101 (296)
T 1ywf_A           53 LSRLDDAGRATLRRLGITDVADLRSSREVARRGPGRVPDGIDVHLLPFP  101 (296)
T ss_dssp             CTTCCHHHHHHHHHHTCCEEEECCCHHHHHHHCSCCCCTTCEEEECCCC
T ss_pred             cccCCHHHHHHHHhCCCCEEEECcChhhhhccCCCCCCCCCEEEEecCc
Confidence            3446677877776656 579999999885422    33454  466653

>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A

Probab=92.64  E-value=0.28  Score=33.94  Aligned_cols=80  Identities=18%  Similarity=0.150  Sum_probs=40.3

Q ss_pred             HHHhCC-CeEEEcCChhhH-hcCCCCCcEEeccccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCCh-hHHHH--HH
Q 029984           82 ELLQAG-HRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSGK-RSMMA--AT  155 (184)
Q Consensus        82 ~~~~~~-~~liDvR~~~e~-~~ghIpgAi~ip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g~-rs~~~--~~  155 (184)
                      .+.+.+ ..|||+++.... ...++ .-.++|..+......... ++.++.+......+.+|+|+|..|. ||..+  +.
T Consensus        24 ~L~~~gI~~Vi~l~~~~~~~~~~~~-~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~~~~ay  102 (144)
T 3ezz_A           24 MLDALGITALLNVSSDCPNHFEGHY-QYKCIPVEDNHKADISSWFMEAIEYIDAVKDCRGRVLVHSQAGISRSATICLAY  102 (144)
T ss_dssp             HHHHTTCCEEEECSSSCCCTTTTTS-EEEECCCCSSSSCCTTTTHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHH
T ss_pred             HHHHCCCeEEEEccCCCCccCCCCc-eEEEEEcccCCCCChHHHHHHHHHHHHHHHhcCCeEEEECCCCCChhHHHHHHH
Confidence            344455 579999974321 11111 235677643322222221 2222222222345679999999886 77643  34


Q ss_pred             HHHHccC
Q 029984          156 DLLNAGF  162 (184)
Q Consensus       156 ~L~~~G~  162 (184)
                      .+...|+
T Consensus       103 lm~~~~~  109 (144)
T 3ezz_A          103 LMMKKRV  109 (144)
T ss_dssp             HHHHHTC
T ss_pred             HHHHcCC
Confidence            4444665

>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}

Probab=92.14  E-value=0.25  Score=35.19  Aligned_cols=80  Identities=15%  Similarity=0.181  Sum_probs=39.1

Q ss_pred             HHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCC-hhHHHH--HHH
Q 029984           82 ELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMMA--ATD  156 (184)
Q Consensus        82 ~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~rs~~~--~~~  156 (184)
                      .+.+.+ ..|||+|+..+-...++ .-+++|..+......... .+.++.+...+..+.+|+|+|..| .||..+  +..
T Consensus        27 ~L~~~gI~~Vi~l~~~~~~~~~~i-~~~~ip~~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSg~~~~ayL  105 (165)
T 1wrm_A           27 QLSKNKVTHILSVHDSARPMLEGV-KYLCIPAADSPSQNLTRHFKESIKFIHECRLRGESCLVHCLAGVSRSVTLVIAYI  105 (165)
T ss_dssp             HHHHTTEEEEEECSTTCCCCSTTC-EEEECCCCSSTTSCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHHCCCcEEEEecCCCCCCCCCC-eEEEEECCCCCCccHHHHHHHHHHHHHHHHHCCCeEEEECCCCCChhHHHHHHHH
Confidence            343455 56899997653211111 125666532211111110 112222222234578999999988 587763  344


Q ss_pred             HHHccC
Q 029984          157 LLNAGF  162 (184)
Q Consensus       157 L~~~G~  162 (184)
                      +...|+
T Consensus       106 m~~~~~  111 (165)
T 1wrm_A          106 MTVTDF  111 (165)
T ss_dssp             HHTSSC
T ss_pred             HHHcCC
Confidence            444465

>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}

Probab=92.14  E-value=0.53  Score=32.81  Aligned_cols=85  Identities=13%  Similarity=0.039  Sum_probs=42.5

Q ss_pred             HHHHHHhCC-CeEEEcCChhhHhc--CCCC-C--cEEeccccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCC-hhH
Q 029984           79 VAHELLQAG-HRYLDVRTPEEFSA--GHAT-G--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRS  150 (184)
Q Consensus        79 ~~~~~~~~~-~~liDvR~~~e~~~--ghIp-g--Ai~ip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~rs  150 (184)
                      ++..+.+.+ ..|||+|+..|...  ...+ |  -+++|..+......... ++.++.+...+..+.+|+|+|..| .|+
T Consensus        25 d~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~~~~~~ip~~d~~~~~l~~~~~~~~~~i~~~~~~~~~vlvHC~aG~~RS  104 (154)
T 2r0b_A           25 KLPVLQKHGITHIICIRQNIEANFIKPNFQQLFRYLVLDIADNPVENIIRFFPMTKEFIDGSLQMGGKVLVHGNAGISRS  104 (154)
T ss_dssp             GHHHHHHTTCCEEEEEECGGGTTTSSCCCTTTSEEEEEECCSSTTSCCGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHH
T ss_pred             cHHHHHHcCCeEEEEeCCccccccCCCCCcCceeEEEEECCCCCcccHHHHHHHHHHHHHHHHhcCCCEEEEcCCCCChH
Confidence            344444556 57899998766421  1222 2  24566532211111110 111122222223577999999988 587


Q ss_pred             HHH--HHHHHHccCC
Q 029984          151 MMA--ATDLLNAGFA  163 (184)
Q Consensus       151 ~~~--~~~L~~~G~~  163 (184)
                      ..+  +..+...|++
T Consensus       105 ~~~~~ayl~~~~~~~  119 (154)
T 2r0b_A          105 AAFVIAYIMETFGMK  119 (154)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHcCCC
Confidence            753  3444456753

>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}

Probab=91.59  E-value=0.35  Score=35.39  Aligned_cols=80  Identities=16%  Similarity=0.129  Sum_probs=40.1

Q ss_pred             HHHhCC-CeEEEcCChhhHhcCCCCCc--EEeccccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCC-hhHHHH--H
Q 029984           82 ELLQAG-HRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMMA--A  154 (184)
Q Consensus        82 ~~~~~~-~~liDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~rs~~~--~  154 (184)
                      .+...+ ..|||+|+..+  ....+|-  +++|+.+......... .+.++.+...+..+.+|+|+|..| .|+..+  +
T Consensus        46 ~L~~~gI~~Vi~l~~~~~--~~~~~gi~y~~ipi~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSgtvv~a  123 (190)
T 2wgp_A           46 LLQARGITCIVNATIEIP--NFNWPQFEYVKVPLADMPHAPIGLYFDTVADKIHSVSRKHGATLVHCAAGVSRSATLCIA  123 (190)
T ss_dssp             HHHHTTCCEEEECCSSSC--CCCCTTSEEEECCCCSSTTSCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHH
T ss_pred             HHHHCCCcEEEEecCCCC--CCCCCCCEEEEEEcccCCCCCHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH
Confidence            334455 57999997532  1123332  4566532211111111 111222222223577899999988 587643  4


Q ss_pred             HHHHHccCC
Q 029984          155 TDLLNAGFA  163 (184)
Q Consensus       155 ~~L~~~G~~  163 (184)
                      ..+...|++
T Consensus       124 yLm~~~~~s  132 (190)
T 2wgp_A          124 YLMKFHNVC  132 (190)
T ss_dssp             HHHHHHCCC
T ss_pred             HHHHHcCCC
Confidence            555556653

>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*

Probab=91.49  E-value=0.25  Score=34.52  Aligned_cols=81  Identities=12%  Similarity=0.149  Sum_probs=42.9

Q ss_pred             HHHHHH-hCC-CeEEEcCChhhHhc----------CCCCCcEEeccccccCCCCCCCHHHHHHHHh----cCCCCCeEEE
Q 029984           79 VAHELL-QAG-HRYLDVRTPEEFSA----------GHATGAINVPYMYRVGSGMTKNLKFVEEVST----RFRKHDEIIV  142 (184)
Q Consensus        79 ~~~~~~-~~~-~~liDvR~~~e~~~----------ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~----~l~~~~~ivv  142 (184)
                      +..+++ +.+ ..|||+|+..|...          ..| .-+++|..+...   ....+.+.....    .+..+.+|+|
T Consensus        19 ~~~~ll~~~gi~~Vi~l~~~~e~~~~~~~~~~~~~~gi-~~~~~p~~d~~~---~~~~~~~~~~~~~i~~~~~~~~~vlV   94 (157)
T 3rgo_A           19 MTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGV-EQLRLSTVDMTG---VPTLANLHKGVQFALKYQALGQCVYV   94 (157)
T ss_dssp             GHHHHHHHSCEEEEEEESCCTTTTTSSCCHHHHHHTTC-EEEEECCCTTTS---SCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             chHHHHHHcCCCEEEECccccccccccCCHHHHHHCCC-eEEEecCCCCCC---CChHHHHHHHHHHHHHHHHCCCEEEE
Confidence            334443 455 56899998765432          111 235666642211   122233333222    2345679999


Q ss_pred             EcCCCh-hHHHH--HHHHHHccCC
Q 029984          143 GCQSGK-RSMMA--ATDLLNAGFA  163 (184)
Q Consensus       143 ~c~~g~-rs~~~--~~~L~~~G~~  163 (184)
                      +|..|. |+..+  +..+...|++
T Consensus        95 HC~~G~~Rsg~~~~a~l~~~~~~~  118 (157)
T 3rgo_A           95 HCKAGRSRSATMVAAYLIQVHNWS  118 (157)
T ss_dssp             ESSSSSSHHHHHHHHHHHHHHTCC
T ss_pred             ECCCCCChHHHHHHHHHHHHcCCC
Confidence            999887 87755  3444445663

>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*

Probab=90.70  E-value=0.36  Score=34.78  Aligned_cols=81  Identities=11%  Similarity=0.181  Sum_probs=40.2

Q ss_pred             HHHhCC-CeEEEcCChhhHh----------cCCCCCcEEeccccccCCCCCCC-HHHHHHHHhcCCC-CCeEEEEcCCCh
Q 029984           82 ELLQAG-HRYLDVRTPEEFS----------AGHATGAINVPYMYRVGSGMTKN-LKFVEEVSTRFRK-HDEIIVGCQSGK  148 (184)
Q Consensus        82 ~~~~~~-~~liDvR~~~e~~----------~ghIpgAi~ip~~~~~~~~~~~~-~~~~~~~~~~l~~-~~~ivv~c~~g~  148 (184)
                      .+.+.+ ..|||+++..++.          ...| .-+++|..+......... .+.++.+...+.. +.+|+|+|..|.
T Consensus        48 ~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~~~~gi-~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~~VlVHC~~G~  126 (183)
T 3f81_A           48 KLQKLGITHVLNAAEGRSFMHVNTNANFYKDSGI-TYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGY  126 (183)
T ss_dssp             HHHHHTCCEEEETTBSSSTTSBCCCTGGGTTTTC-EEEECCCCCSTTSCGGGGHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             HHHHCCCcEEEECCCCccccccccchhhcccCCC-EEEEEEcCCCCcccHHHHHHHHHHHHHHHHHcCCCeEEEECCCCc
Confidence            333445 5799999766532          1111 124666532221111111 1222222222233 678999999886


Q ss_pred             -hHHH-HH-HHHHHccCC
Q 029984          149 -RSMM-AA-TDLLNAGFA  163 (184)
Q Consensus       149 -rs~~-~~-~~L~~~G~~  163 (184)
                       |+.. ++ ..+...|++
T Consensus       127 ~RSg~~v~ayLm~~~~~~  144 (183)
T 3f81_A          127 SRSPTLVIAYLMMRQKMD  144 (183)
T ss_dssp             SHHHHHHHHHHHHHHCCC
T ss_pred             chHHHHHHHHHHHHhCCC
Confidence             8765 33 444456663

>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}

Probab=90.67  E-value=0.57  Score=34.16  Aligned_cols=80  Identities=14%  Similarity=0.118  Sum_probs=40.0

Q ss_pred             HHHhCC-CeEEEcCChhhHhcCCCCCc--EEeccccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCC-hhHHHH--H
Q 029984           82 ELLQAG-HRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMMA--A  154 (184)
Q Consensus        82 ~~~~~~-~~liDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~rs~~~--~  154 (184)
                      .+...+ ..|||+|...+  ....+|-  +++|..+......... .+.++.+...+..+.+|+|+|..| .||..+  +
T Consensus        40 ~L~~~gIt~Vi~l~~~~~--~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~fI~~~~~~~~~VLVHC~aG~sRS~~vv~a  117 (188)
T 2esb_A           40 MLSSNQITMVINVSVEVV--NTLYEDIQYMQVPVADSPNSRLCDFFDPIADHIHSVEMKQGRTLLHCAAGVSRSAALCLA  117 (188)
T ss_dssp             HHHHTTCCEEEECCSSCC--CCCCTTCEEEECCCCSCTTSCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHH
T ss_pred             HHHHCCCcEEEEecCCCC--CcCCCCCEEEEEeCcCCCCccHHHHHHHHHHHHHHHHHcCCEEEEECCCCCchHHHHHHH
Confidence            333455 57899997532  1122332  4566532211111110 112222222234578999999988 587743  4


Q ss_pred             HHHHHccCC
Q 029984          155 TDLLNAGFA  163 (184)
Q Consensus       155 ~~L~~~G~~  163 (184)
                      ..+...|++
T Consensus       118 yLm~~~~~s  126 (188)
T 2esb_A          118 YLMKYHAMS  126 (188)
T ss_dssp             HHHHHSCCC
T ss_pred             HHHHHcCCC
Confidence            555566763

>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}

Probab=90.33  E-value=0.5  Score=32.69  Aligned_cols=80  Identities=13%  Similarity=0.081  Sum_probs=39.5

Q ss_pred             HHHhCC-CeEEEcCChhhHhcCCCCC--cEEeccccccCCCCCC-CHHHHHHHHhcCCCCCeEEEEcCCCh-hHHHH--H
Q 029984           82 ELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTK-NLKFVEEVSTRFRKHDEIIVGCQSGK-RSMMA--A  154 (184)
Q Consensus        82 ~~~~~~-~~liDvR~~~e~~~ghIpg--Ai~ip~~~~~~~~~~~-~~~~~~~~~~~l~~~~~ivv~c~~g~-rs~~~--~  154 (184)
                      .+.+.+ ..||+++...+  .....|  -.++|..+........ -++.++.+...+..+.+|+|+|..|. ||..+  +
T Consensus        24 ~L~~~gI~~Vl~l~~~~~--~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~sRS~~~v~a  101 (144)
T 3s4e_A           24 TLKKNKVTHILNVAYGVE--NAFLSDFTYKSISILDLPETNILSYFPECFEFIEEAKRKDGVVLVHSNAGVSRAAAIVIG  101 (144)
T ss_dssp             HHHHTTCCEEEECSSSCC--CCCTTTSEEEECCCCCCTTSCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHH
T ss_pred             HHHHcCCCEEEEccCCCC--CCCCCCCEEEEEeccCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHHHHH
Confidence            344455 57899986332  111112  2566664322211111 11222222222345678999999886 76543  3


Q ss_pred             HHHHHccCC
Q 029984          155 TDLLNAGFA  163 (184)
Q Consensus       155 ~~L~~~G~~  163 (184)
                      ..+...|++
T Consensus       102 yLm~~~~~~  110 (144)
T 3s4e_A          102 FLMNSEQTS  110 (144)
T ss_dssp             HHHHHHCCC
T ss_pred             HHHHHcCCC
Confidence            444556663

>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}

Probab=90.02  E-value=0.53  Score=35.26  Aligned_cols=77  Identities=14%  Similarity=0.131  Sum_probs=38.3

Q ss_pred             hCC-CeEEEcCChhh-HhcCCCCCcEEeccccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCC-hhHHH--HHHHHH
Q 029984           85 QAG-HRYLDVRTPEE-FSAGHATGAINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMM--AATDLL  158 (184)
Q Consensus        85 ~~~-~~liDvR~~~e-~~~ghIpgAi~ip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~rs~~--~~~~L~  158 (184)
                      +.+ ..|||++...+ +...+| .-+++|+.+......... .+.++.+...+..+.+|+|+|..| .|+..  +++.+.
T Consensus        29 ~~GIt~VInl~~e~~~~~~~gi-~y~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~aG~sRSgtvv~AYLm~  107 (211)
T 2g6z_A           29 NLHITALLNVSRRTSEACMTHL-HYKWIPVEDSHTADISSHFQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMK  107 (211)
T ss_dssp             HHTCCEEEECSSCCCCTTCTTS-EEEECCCCSSTTSCCGGGHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHHHHH
T ss_pred             HCCCCEEEEcCCCCccccccCC-EEEEeeCCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCcHHHHHHHHHHH
Confidence            344 57899997532 111111 235666642221111111 122222222234578899999988 48764  345555


Q ss_pred             HccC
Q 029984          159 NAGF  162 (184)
Q Consensus       159 ~~G~  162 (184)
                      ..|+
T Consensus       108 ~~g~  111 (211)
T 2g6z_A          108 TKQF  111 (211)
T ss_dssp             HHCC
T ss_pred             HcCC
Confidence            5665

>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}

Probab=87.79  E-value=2.7  Score=31.41  Aligned_cols=28  Identities=29%  Similarity=0.489  Sum_probs=19.6

Q ss_pred             CCCCeEEEEcCCC-hhHHHH--HHHHHHccC
Q 029984          135 RKHDEIIVGCQSG-KRSMMA--ATDLLNAGF  162 (184)
Q Consensus       135 ~~~~~ivv~c~~g-~rs~~~--~~~L~~~G~  162 (184)
                      ..+.+|+|+|..| .||..+  ++.+...|+
T Consensus       137 ~~~~~VLVHC~aG~sRS~tvv~aYLm~~~~~  167 (219)
T 2y96_A          137 DDHSKILVHCVMGRSRSATLVLAYLMIHKDM  167 (219)
T ss_dssp             STTCCEEEECSSSSSHHHHHHHHHHHHHSCC
T ss_pred             ccCCeEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence            4577899999988 487753  345555665

>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A

Probab=87.57  E-value=2.2  Score=31.45  Aligned_cols=27  Identities=22%  Similarity=0.401  Sum_probs=19.1

Q ss_pred             CCCeEEEEcCCC-hhHHHH--HHHHHHccC
Q 029984          136 KHDEIIVGCQSG-KRSMMA--ATDLLNAGF  162 (184)
Q Consensus       136 ~~~~ivv~c~~g-~rs~~~--~~~L~~~G~  162 (184)
                      .+.+|+|+|..| .||..+  +..+...|+
T Consensus       130 ~~~~VLVHC~aG~sRS~tvv~aYLm~~~~~  159 (205)
T 2pq5_A          130 PQGRVLVHCAMGVSRSATLVLAFLMIYENM  159 (205)
T ss_dssp             TTCCEEEECSSSSSHHHHHHHHHHHHHSCC
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHcCC
Confidence            567899999988 487754  345555665

>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}

Probab=86.90  E-value=4.4  Score=28.09  Aligned_cols=28  Identities=25%  Similarity=0.313  Sum_probs=18.5

Q ss_pred             CCCeEEEEcCCCh-hHHHH-HHHHHHc-cCC
Q 029984          136 KHDEIIVGCQSGK-RSMMA-ATDLLNA-GFA  163 (184)
Q Consensus       136 ~~~~ivv~c~~g~-rs~~~-~~~L~~~-G~~  163 (184)
                      ++.+|+|+|..|. |+..+ +..|... |++
T Consensus       108 ~~~~vlVHC~aG~~RTg~~~a~~L~~~~~~~  138 (167)
T 3s4o_A          108 PPPTIGVHCVAGLGRAPILVALALVEYGNVS  138 (167)
T ss_dssp             CCCEEEEECSSSSSHHHHHHHHHHHHTTCCC
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHhCCCC
Confidence            3789999999875 76543 3444444 653

>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}

Probab=86.55  E-value=0.7  Score=32.74  Aligned_cols=29  Identities=7%  Similarity=0.187  Sum_probs=19.8

Q ss_pred             CCCCeEEEEcCCCh-hHHHH--HHHHHHccCC
Q 029984          135 RKHDEIIVGCQSGK-RSMMA--ATDLLNAGFA  163 (184)
Q Consensus       135 ~~~~~ivv~c~~g~-rs~~~--~~~L~~~G~~  163 (184)
                      ..+.+|+|+|..|. ||..+  +..+...|++
T Consensus        85 ~~~~~VlVHC~~G~sRS~~vv~ayLm~~~~~s  116 (161)
T 3emu_A           85 QRKEGVLIISGTGVNKAPAIVIAFLMYYQRLS  116 (161)
T ss_dssp             HTTCEEEEEESSSSSHHHHHHHHHHHHHTTCC
T ss_pred             hcCCeEEEEcCCCCcHHHHHHHHHHHHHhCCC
Confidence            45679999999886 76543  4555556663

>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A

Probab=85.12  E-value=1.3  Score=31.67  Aligned_cols=28  Identities=18%  Similarity=0.218  Sum_probs=19.0

Q ss_pred             CCCeEEEEcCCC-hhHHHH--HHHHHHccCC
Q 029984          136 KHDEIIVGCQSG-KRSMMA--ATDLLNAGFA  163 (184)
Q Consensus       136 ~~~~ivv~c~~g-~rs~~~--~~~L~~~G~~  163 (184)
                      .+.+|+|+|..| .||..+  +..+...|..
T Consensus       107 ~~~~VlVHC~aG~~RSg~~v~aylm~~~~~~  137 (176)
T 3cm3_A          107 RNEPVLVHSAAGVNRSGAMILAYLMSKNKES  137 (176)
T ss_dssp             HTCCEEEECSSSSSHHHHHHHHHHHHHCCSS
T ss_pred             CCCcEEEECCcCCCHHHHHHHHHHHHHhCCC
Confidence            467899999988 477653  3444555654

>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*

Probab=83.82  E-value=1.7  Score=30.14  Aligned_cols=23  Identities=22%  Similarity=0.123  Sum_probs=15.3

Q ss_pred             HHHHHHHHhCC-CeEEEcCChhhH
Q 029984           77 VRVAHELLQAG-HRYLDVRTPEEF   99 (184)
Q Consensus        77 ~~~~~~~~~~~-~~liDvR~~~e~   99 (184)
                      .+++..+.+.+ ..|||+|+..|.
T Consensus        18 ~~d~~~L~~~gi~~Vi~l~~~~e~   41 (161)
T 2i6j_A           18 ENEILEWRKEGVKRVLVLPEDWEI   41 (161)
T ss_dssp             HHHHHHHHHHTCCEEEECSCHHHH
T ss_pred             HHHHHHHHHCCCCEEEEcCchhhh
Confidence            34555555555 579999998664

>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A

Probab=83.65  E-value=3.6  Score=29.68  Aligned_cols=83  Identities=18%  Similarity=0.202  Sum_probs=41.5

Q ss_pred             cCHHHHHHHH-hCC-CeEEEcCChhh----HhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc------CCCCCeEEE
Q 029984           75 VPVRVAHELL-QAG-HRYLDVRTPEE----FSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR------FRKHDEIIV  142 (184)
Q Consensus        75 i~~~~~~~~~-~~~-~~liDvR~~~e----~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~------l~~~~~ivv  142 (184)
                      .+.++..+.+ +.+ ..|||++++.+    +...+| .-+++|..+    +.....+.+......      ..++.+|+|
T Consensus        48 ~t~~~~~~~L~~~gi~~Iv~l~~~~~~~~~~~~~~i-~~~~~pi~d----~~~~~~~~~~~~~~~i~~~~~~~~~~~VlV  122 (189)
T 3rz2_A           48 ATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGI-HVLDWPFDD----GAPPSNQIVDDWLSLVKIKFREEPGCCIAV  122 (189)
T ss_dssp             TTHHHHHHHHHTTTEEEEEECSCCCSCCHHHHHSSC-EEEECCCCS----SSCCCSHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred             ccHHHHHHHHHHcCCcEEEEeCCCcCCHHHHHHcCc-EEEEecCCC----CCCCCHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence            4444444444 445 56899997532    222222 124555321    111222332322222      246789999


Q ss_pred             EcCCCh-hHHHH-HHHHHHccC
Q 029984          143 GCQSGK-RSMMA-ATDLLNAGF  162 (184)
Q Consensus       143 ~c~~g~-rs~~~-~~~L~~~G~  162 (184)
                      +|..|. |+..+ +..|...|+
T Consensus       123 HC~aG~gRSg~~va~~L~~~g~  144 (189)
T 3rz2_A          123 HCVAGLGRAPVLVALALIEGGM  144 (189)
T ss_dssp             ECSSSSTTHHHHHHHHHHTTTC
T ss_pred             ECCCCCCHHHHHHHHHHHHcCC
Confidence            999775 76643 344444555

>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}

Probab=83.54  E-value=1.9  Score=31.03  Aligned_cols=46  Identities=20%  Similarity=0.177  Sum_probs=32.5

Q ss_pred             HHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984          127 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  173 (184)
Q Consensus       127 ~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~  173 (184)
                      +..++....++.+++|+|++-..+...+..|...|+. +..+.|++.
T Consensus        36 L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~-~~~lhg~~~   81 (185)
T 2jgn_A           36 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA-CTSIHGDRS   81 (185)
T ss_dssp             HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCC-EEEEC----
T ss_pred             HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCc-eEEEeCCCC
Confidence            4444444545678999999988888999999999984 777888865

>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, P protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR}

Probab=83.18  E-value=2.1  Score=31.22  Aligned_cols=75  Identities=13%  Similarity=0.167  Sum_probs=35.9

Q ss_pred             CeEEEcCChhhHh-cCCCCCcEEeccccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCC-hhHHHHH--HHHHHccC
Q 029984           88 HRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMMAA--TDLLNAGF  162 (184)
Q Consensus        88 ~~liDvR~~~e~~-~ghIpgAi~ip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~rs~~~~--~~L~~~G~  162 (184)
                      ..|||+|++.+.. ..++ .-+++|............ .+.++.+......+.+|+|+|..| .|+..++  ..+...|.
T Consensus        75 ~~Vi~l~~~~~~~~~~~~-~~~~~p~~d~~~~~l~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~v~~yL~~~~~~  153 (195)
T 2q05_A           75 KYVLNLTMDKYTLPNSNI-NIIHIPLVDDTTTDISKYFDDVTAFLSKCDQRNEPVLVHCAAGVNRSGAMILAYLMSKNKE  153 (195)
T ss_dssp             SEEEECSSSCCCCTTCCC-EEEECCCCCSSSCCCGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCCCCcccCCc-EEEEEEcCCCCcccHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCChHHHHHHHHHHHHhCC
Confidence            3689999865321 1122 124555532111111100 122222222223567999999988 5776544  33334565


Q ss_pred             C
Q 029984          163 A  163 (184)
Q Consensus       163 ~  163 (184)
                      +
T Consensus       154 ~  154 (195)
T 2q05_A          154 S  154 (195)
T ss_dssp             S
T ss_pred             C
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	8e-35
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	2e-15
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	2e-11
d1qxna_	137	c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf	1e-10
d1uara1	143	c.46.1.2 (A:2-144) Sulfurtransferase {Thermus ther	2e-10
d1e0ca2	136	c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacte	3e-10
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	5e-10
d1yt8a3	157	c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase	5e-09
d1e0ca1	135	c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter	1e-08
d1okga2	139	c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtran	3e-08
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	7e-08
d1ymka1	174	c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens)	1e-07
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	2e-07
d1yt8a2	101	c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase P	2e-07
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	1e-06
d1urha2	120	c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtran	2e-06
d1okga1	156	c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransf	9e-06
d1rhsa2	144	c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [	1e-05
d1urha1	147	c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransf	6e-05
d1rhsa1	149	c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [Ta	6e-05
d1uara2	141	c.46.1.2 (A:145-285) Sulfurtransferase {Thermus th	1e-04
d1t3ka_	132	c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {	0.002

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  116 bits (292), Expect = 8e-35
 Identities = 79/117 (67%), Positives = 93/117 (79%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 126
           E   VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F
Sbjct: 2   EESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDF 61

Query: 127 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
           +E+VS+ F + D IIVGCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct: 62  LEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 118

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 66.3 bits (161), Expect = 2e-15
 Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 14/111 (12%)

Query: 74  SVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 132
            + V  AH+ LQ     L D+R P+ F+ GHA  A ++                      
Sbjct: 6   CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTL------------GAFMR 53

Query: 133 RFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
                  ++V C  G  S  AA  LL  G+  +  I GGF AW++   P E
Sbjct: 54  DNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE 103

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 56.8 bits (136), Expect = 2e-11
 Identities = 28/121 (23%), Positives = 39/121 (32%), Gaps = 13/121 (10%)

Query: 66  LEAVGVPTSVPVRVAHELLQ--AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN 123
           +EA     S+       LL   A    LD R  +E+      G I+VP            
Sbjct: 17  VEAERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAEL-------- 68

Query: 124 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNGLPT 182
              +            +IV C    RS++    LLNAG    +  +  G   W   G   
Sbjct: 69  --VLRVAELAPDPRTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQL 126

Query: 183 E 183
           E
Sbjct: 127 E 127

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 54.9 bits (131), Expect = 1e-10
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 80  AHELLQAGHRY--LDVRTPEEFSA---GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
           A++LLQ       +DVR P+E  A          ++             L          
Sbjct: 30  AYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGLDP-------- 81

Query: 135 RKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 184
                ++V C++  R+ +A   L   GF  I +  GG   W + GLP+  
Sbjct: 82  --EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLD 129

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 54.1 bits (129), Expect = 2e-10
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 7/112 (6%)

Query: 79  VAHELLQAGHRYLDVRTP-EEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-- 135
           V   L     R L+V      +  GH  GA  + +       + ++    EE +      
Sbjct: 14  VQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERL 73

Query: 136 ---KHDEIIVGCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
                  +++        +  A       G   +  + GG   W + G P  
Sbjct: 74  GISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLT 125

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 53.8 bits (128), Expect = 3e-10
 Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 21/135 (15%)

Query: 70  GVPTSV-----PVRVAHELLQA----GHRYLDVRTPEEFSA--------GHATGAINVPY 112
           G P ++     P      LL           D R+P+E+          GH  GA+N  +
Sbjct: 1   GGPVALSLHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEW 60

Query: 113 MYRVGSGMTKN---LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA 169
              +                         EI+  CQ+  RS +        G+  +   A
Sbjct: 61  TAAMDPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYA 120

Query: 170 GGFAAW-RQNGLPTE 183
           G +  W      P E
Sbjct: 121 GSWGEWGNHPDTPVE 135

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 5e-10
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 14/98 (14%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           +D R P E+  GH  GA+N+     +   +   L     V T  ++   +     S +R 
Sbjct: 48  IDCRYPYEYEGGHIKGAVNLH----MEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERG 103

Query: 151 MMAATDLLNA----------GFAGITDIAGGFAAWRQN 178
                 +              +  +  + GG+  +   
Sbjct: 104 PRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK 141

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.7 bits (120), Expect = 5e-09
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           P  +A  L + G R LD      ++  H  GA  V                 ++   R  
Sbjct: 9   PTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQL------------KQALERLG 56

Query: 136 KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
             +  ++ C S   +  A  ++       +  + GG +AW   GLPTE
Sbjct: 57  TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTE 104

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 48.9 bits (115), Expect = 1e-08
 Identities = 16/113 (14%), Positives = 31/113 (27%), Gaps = 8/113 (7%)

Query: 79  VAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY--------MYRVGSGMTKNLKFVEEV 130
           +   L       +D+ +   ++ GH  GA  V                   + L+ +   
Sbjct: 16  LQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGE 75

Query: 131 STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
                +   ++   + G  +      L   G      + GG  AW     P  
Sbjct: 76  LGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLS 128

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 139

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 48.3 bits (114), Expect = 3e-08
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 23/116 (19%)

Query: 91  LDVRTPEEFS-----------AGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTRFR--- 135
            D R+ + F+            GH  GA N+PY   + + G  K L+  EE+        
Sbjct: 16  TDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVV 75

Query: 136 -------KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW-RQNGLPTE 183
                       +  C SG  + +    + + G        G ++ +      P  
Sbjct: 76  QGAGDAADLSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIM 131

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 7e-08
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 21/128 (16%)

Query: 71  VPTSVPVRVAHELLQAGH---RYLDVRTPEEFSAGHATGAINVPY----MYRVGSGMTKN 123
           +  S  V   +E L+ G+     +D R  E + + H   AINV      + R+  G    
Sbjct: 14  MAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPV 73

Query: 124 LKFVE-----EVSTRFRKHDEIIVGCQSGKRS---------MMAATDLLNAGFAGITDIA 169
                     +  TR    D +++  +S             +      L         + 
Sbjct: 74  RALFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLE 133

Query: 170 GGFAAWRQ 177
           GGF+ ++ 
Sbjct: 134 GGFSKFQA 141

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 1e-07
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 15/99 (15%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH   A+N+P      S + K+            K   +I  C+ S +R
Sbjct: 48  VDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCS----LDKRVILIFHCEFSSER 103

Query: 150 SMMAATDLLNA----------GFAGITDIAGGFAAWRQN 178
                  +              +  +  + GG+  +   
Sbjct: 104 GPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ 142

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 2e-07
 Identities = 8/126 (6%), Positives = 33/126 (26%), Gaps = 21/126 (16%)

Query: 74  SVPVRVAHELLQAGHRY---LDVRTPEEFSAGHATGAINVPY-----MYRVGSGMTKNLK 125
           ++  +  + ++   +     +D R  +++       +++VP                   
Sbjct: 2   AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPD 61

Query: 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA-------------GFAGITDIAGGF 172
             ++   +    + +++         +     L +                    + GG+
Sbjct: 62  DSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGY 121

Query: 173 AAWRQN 178
             W   
Sbjct: 122 ENWLLC 127

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.0 bits (105), Expect = 2e-07
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 75  VPVRVAHELLQA-----GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE 129
           + VR  H++  A         LDVR  + F+  H   A N+P          +  +    
Sbjct: 1   IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPRR--- 57

Query: 130 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 179
                     I V       + +AA  L + G++ +  + GG + WR  G
Sbjct: 58  -------DTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAG 100

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.8 bits (102), Expect = 1e-06
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 15/115 (13%)

Query: 74  SVPVRVAHELLQAGHR---YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
            + +    +      R    LDVRTPEE+ AGH  G+ + P                E  
Sbjct: 24  RLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQL----------VQETD 73

Query: 131 STRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR-QNGLPTEP 184
                +   +++    G R+ M+A+ L   G+  +  + G   A   + G  + P
Sbjct: 74  HVASVRGARLVLVDDDGVRANMSASWLAQMGW-QVAVLDGLSEADFSERGAWSAP 127

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 43.1 bits (100), Expect = 2e-06
 Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 17/116 (14%)

Query: 77  VRVAHELLQAGHRY----LDVRTPEEFSA-------GHATGAI-NVPYMYRVGSGMTKNL 124
           V    ++L A H      +D R    F+A       G   G I     +          L
Sbjct: 5   VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGEL 64

Query: 125 KFVEEVSTRFR-----KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 175
           K  +E+   F          IIV C SG  + +    L       +    G ++ W
Sbjct: 65  KTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 120

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 41.6 bits (97), Expect = 9e-06
 Identities = 19/114 (16%), Positives = 29/114 (25%), Gaps = 19/114 (16%)

Query: 89  RYLDVRT--------PEEFSAGHATGAINV--------PYMYRVGSGMTKNLKFVEEVST 132
           R +D R           +++  H   AI                            +   
Sbjct: 23  RIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDWCM 82

Query: 133 RFRKHDE---IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
                 E   +    + G         +LN+  A    I GGF A +  GL  E
Sbjct: 83  ANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQACKAAGLEME 136

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 16/121 (13%), Positives = 27/121 (22%), Gaps = 15/121 (12%)

Query: 79  VAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNL----------KFVE 128
           V   L     + +D R    +                +   +              K  E
Sbjct: 18  VLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPE 77

Query: 129 EVSTRFR-----KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
           E+   F          +I  C+ G  +   A      G   +    G +  W     P  
Sbjct: 78  ELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPET 137

Query: 184 P 184
            
Sbjct: 138 W 138

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 22/115 (19%)

Query: 89  RYLDVRTP----------EEFSAGHATGAINVPYM--YRVGSGMTKNLKFVEEVSTRFRK 136
           + +D R            +E+  GH  GA+           S +   L   E  +   R+
Sbjct: 20  QIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRE 79

Query: 137 H-----DEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAWRQNGLPTE 183
                   +IV  +       A          G+  ++   GG A W+++ L  E
Sbjct: 80  LGVNQDKHLIVYDEG--NLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLE 132

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 22/126 (17%), Positives = 32/126 (25%), Gaps = 23/126 (18%)

Query: 81  HELLQAGH-----RYLDVRTP--------EEFSAGHATGAINVPYM--YRVGSGMTKNLK 125
            E ++AG      R LD            +E+   H  GA            S     L 
Sbjct: 16  AESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLP 75

Query: 126 FVEEVSTRFR-----KHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAWRQ 177
                +             ++V       S  A          G   ++   GGF  W +
Sbjct: 76  SEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLK 135

Query: 178 NGLPTE 183
            G P  
Sbjct: 136 EGHPVT 141

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 21/114 (18%)

Query: 91  LDVRTPEEFS----------------AGHATGAINVP---YMYRVGSGMTKNLKFVEEVS 131
           +DVR+P+E+                 AGH  GA N+P    +   G+  +          
Sbjct: 24  VDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEP 83

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDL-LNAGFAGITDIAGGFAAW-RQNGLPTE 183
               K  +I+V C+  +RS  +   L    G+  + +  G +  W    G+P  
Sbjct: 84  LGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIA 137

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.3 bits (77), Expect = 0.002
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 1/94 (1%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVG-CQSGKR 149
           +DVR  E    GH  G+++                  ++ +  F      + G   + + 
Sbjct: 27  IDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDKDTLVFHSALSQVRGPTCARRL 86

Query: 150 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 183
                    + G   I  +  GF  W  +G P  
Sbjct: 87  VNYLDEKKEDTGIKNIMILERGFNGWEASGKPVC 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.96
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.94
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.93
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.93
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.93
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.91
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.91
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.91
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.91
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.9
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.9
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.89
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.88
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.88
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.87
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.85
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.75
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.71
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.67
d1xria_	151	Putative phosphatase At1g05000 {Thale cress (Arabi	95.28
d1fpza_	176	Kinase associated phosphatase (kap) {Human (Homo s	92.61
d1c4oa2	174	Nucleotide excision repair enzyme UvrB {Thermus th	91.77
d1ywfa1	272	Phosphotyrosine protein phosphatase PtpB {Mycobact	90.95
d1m3ga_	145	Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax	88.13
d1ohea2	182	Proline directed phosphatase CDC14b2 {Human (Homo	85.68
d1t5la2	181	Nucleotide excision repair enzyme UvrB {Bacillus c	85.42
d1jl3a_	137	Arsenate reductase ArsC {Bacillus subtilis [TaxId:	83.65
d1t5ia_	168	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	81.51
d1jr6a_	138	HCV helicase domain {Human hepatitis C virus (HCV)	81.21

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=3.9e-30  Score=179.46  Aligned_cols=115  Identities=68%  Similarity=1.120  Sum_probs=104.9

Q ss_pred             CCCCcccCHHHHHHHHhCCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCCh
Q 029984           69 VGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (184)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~  148 (184)
                      ...++.++++.+.++++++.+|||||++.||..||||||+|+|+...........++++......++++++|||||++|.
T Consensus         4 ~~~p~~i~~~~a~~l~~~g~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~C~~G~   83 (119)
T d1tq1a_           4 SRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGG   83 (119)
T ss_dssp             SCCCEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCS
T ss_pred             ccCCCccCHHHHHHHHHCcCEEEECCCHHHHHcCCCCCccchhhcccccccccccHHHHHHHHHhcCCCcEEEEEcCCcC
Confidence            45677899999999999899999999999999999999999998665555666677888888888899999999999999


Q ss_pred             hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          149 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       149 rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      ||..++..|.+.||+||++|+|||.+|.++|+|++
T Consensus        84 rs~~a~~~L~~~G~~nv~~l~GG~~~W~~~g~P~e  118 (119)
T d1tq1a_          84 RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK  118 (119)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             cHHHHHHHHHhcccCCeEEecChHHHHHHCCCCcc
Confidence            99999999999999999999999999999999997

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=7.4e-27  Score=159.98  Aligned_cols=99  Identities=30%  Similarity=0.500  Sum_probs=89.3

Q ss_pred             CcccCHHHHHHHHhC-CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCChhH
Q 029984           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~rs  150 (184)
                      ...++++++.+++++ +.+|||||++.||..||||||+|+|.            +.+......++++++|||||.+|.||
T Consensus         4 ~~~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~gA~~ip~------------~~l~~~~~~~~~~~~ivv~c~~g~rs   71 (108)
T d1gmxa_           4 FECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTN------------DTLGAFMRDNDFDTPVMVMCYHGNSS   71 (108)
T ss_dssp             CEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCH------------HHHHHHHHHSCTTSCEEEECSSSSHH
T ss_pred             CCEeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCCCcccccc------------hhHHHHhhhccccCcccccCCCChHH
Confidence            345889999988865 48999999999999999999999998            57777788899999999999999999


Q ss_pred             HHHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          151 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       151 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      ..++..|.+.||+||++|+||+.+|+++ +|++
T Consensus        72 ~~~a~~L~~~G~~~v~~l~GG~~~W~~~-~p~e  103 (108)
T d1gmxa_          72 KGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE  103 (108)
T ss_dssp             HHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGG
T ss_pred             HHHHHHHHHcCCCCEEEEcChHHHHHHc-CCCc
Confidence            9999999999999999999999999754 7765

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.93  E-value=2.4e-26  Score=163.54  Aligned_cols=113  Identities=21%  Similarity=0.335  Sum_probs=94.0

Q ss_pred             CCcccCHHHHHHHHhC-CCeEEEcCChhhHh--------cCCCCCcEEeccccccC-CCCCCCHHHHHHHHhc--CCCCC
Q 029984           71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHD  138 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~--------~ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--l~~~~  138 (184)
                      ....++.+++.+.+++ +.+|||+|++.||.        .||||||+|+|+..+.. .+.+...+.++..+..  +++++
T Consensus        10 ~~~~~s~d~l~~~l~~~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~   89 (136)
T d1e0ca2          10 DEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDK   89 (136)
T ss_dssp             STTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTS
T ss_pred             CCceEcHHHHHHhhCCCCeEEEECcChHHhcccccccccCCcchhHhhhhhhhhhccccccchhHHHhhhhhhcccCCCC
Confidence            3446888999888875 48899999999996        78999999999865542 3444445556666554  57899


Q ss_pred             eEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhC-CCCCC
Q 029984          139 EIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-GLPTE  183 (184)
Q Consensus       139 ~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~-g~p~~  183 (184)
                      +||+||++|.+|..+++.|+.+||+||++|+|||.+|.++ ++|+|
T Consensus        90 ~vV~yC~~G~~a~~~~~~l~~~G~~~v~~ydGg~~eW~~~~~~PvE  135 (136)
T d1e0ca2          90 EIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE  135 (136)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             ceEEeCCChHHHHHHHHHHHHcCCCCcEEecCCHHHHhcCCCCCCc
Confidence            9999999999999999999999999999999999999774 99987

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=4.1e-26  Score=162.38  Aligned_cols=102  Identities=25%  Similarity=0.406  Sum_probs=87.3

Q ss_pred             CCcccCHHHHHHHHhCC--CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcCC
Q 029984           71 VPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQS  146 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~~--~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~~  146 (184)
                      ....++++++.++++++  .+|||||++.||..||||||+|||..            .+...+..+  +++++||+||.+
T Consensus        22 ~~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpGAi~ip~~------------~l~~~~~~l~~~~~~~iV~~C~~   89 (136)
T d1yt8a1          22 HTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGA------------ELVLRVAELAPDPRTRVIVNCAG   89 (136)
T ss_dssp             CCCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCTTCEECCGG------------GHHHHHHHHCCSTTSEEEEECSS
T ss_pred             CCCccCHHHHHHHHhcCCCcEEEEcCChhhccceecCCchhhhhh------------HHHHHhhcccccccceEEEEcCC
Confidence            34569999999988644  78999999999999999999999984            333333333  467899999999


Q ss_pred             ChhHHHHHHHHHHccCCC-eeeccccHHHHHhCCCCCCC
Q 029984          147 GKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       147 g~rs~~~~~~L~~~G~~~-v~~l~GG~~~W~~~g~p~~~  184 (184)
                      |.||..++..|++.||+| |++|.||+.+|..+|+|+++
T Consensus        90 g~rs~~aa~~L~~~G~~~~V~~L~GG~~~W~~~G~pve~  128 (136)
T d1yt8a1          90 RTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLEH  128 (136)
T ss_dssp             SHHHHHHHHHHHHTTCSSCEEEETTHHHHHHHTTCCCBC
T ss_pred             CCchHHHHHHHHHcCCCceEEEeCCcHHHHHHCCCCcee
Confidence            999999999999999986 99999999999999999974

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=5.1e-26  Score=165.61  Aligned_cols=103  Identities=20%  Similarity=0.307  Sum_probs=92.0

Q ss_pred             CCCcccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCCh
Q 029984           70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (184)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~  148 (184)
                      +....|+++++.++++++ .+|||||++.||..||||||+|+|..            .+......++++++||+||.+|.
T Consensus         2 P~~~~Is~~el~~~l~~~~~~ivDvR~~~e~~~ghIpga~~~~~~------------~~~~~~~~~~~~~~vv~~c~~g~   69 (157)
T d1yt8a3           2 PRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRS------------QLKQALERLGTAERYVLTCGSSL   69 (157)
T ss_dssp             CCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGG------------GHHHHHHHHCCCSEEEEECSSSH
T ss_pred             CCCCEECHHHHHHHHhCCCeEEEEeCCHHHHhhcccccceecccc------------cccccccccccCcceeeccCCcc
Confidence            345679999999998765 88999999999999999999999983            44555566788999999999999


Q ss_pred             hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          149 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       149 rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      +|..++..|...||++|++|.||+.+|+.+|+|+++
T Consensus        70 rs~~~a~~l~~~G~~~v~~L~GG~~~W~~aGlp~~~  105 (157)
T d1yt8a3          70 LARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTED  105 (157)
T ss_dssp             HHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBC
T ss_pred             hHHHHHHHHhcccCceEEEecCCHHHHhhCCCCCcC
Confidence            999999999999999999999999999999999874

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.91  E-value=6e-25  Score=156.47  Aligned_cols=101  Identities=25%  Similarity=0.399  Sum_probs=86.6

Q ss_pred             CCcccCHHHHHHHHhC--CCeEEEcCChhhHhcCC---CCCcEEeccccccCCCCCCCHHHHHHHH--hcCCCCCeEEEE
Q 029984           71 VPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGH---ATGAINVPYMYRVGSGMTKNLKFVEEVS--TRFRKHDEIIVG  143 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~--~~~liDvR~~~e~~~gh---IpgAi~ip~~~~~~~~~~~~~~~~~~~~--~~l~~~~~ivv~  143 (184)
                      ....++++++.+++.+  +++|||||++.||..+|   |+||+|+|..            .+...+  ..++++++||||
T Consensus        21 ~~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~~a~~ip~~------------~l~~~~~~~~~~~~~~ivvy   88 (137)
T d1qxna_          21 DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRG------------KLEPLLAKSGLDPEKPVVVF   88 (137)
T ss_dssp             SSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTT------------TSHHHHHHHCCCTTSCEEEE
T ss_pred             cCCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhccccccccccCCcc------------cccccccccccCcccceeee
Confidence            4557899999998853  49999999999999998   6678999974            222222  346889999999


Q ss_pred             cCCChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCC
Q 029984          144 CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       144 c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      |.+|.||..++..|.+.||+||++|+||+.+|..+|+|++
T Consensus        89 C~~G~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~P~~  128 (137)
T d1qxna_          89 CKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSL  128 (137)
T ss_dssp             CCSSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEE
T ss_pred             ecccchHHHHHHHHHHcCCCcEEEecCHHHHHHHcCCCCC
Confidence            9999999999999999999999999999999999999975

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.8e-24  Score=146.00  Aligned_cols=96  Identities=25%  Similarity=0.367  Sum_probs=79.7

Q ss_pred             ccCHHHHHHHHh--CCCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc-CCCCCeEEEEcCCChhH
Q 029984           74 SVPVRVAHELLQ--AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FRKHDEIIVGCQSGKRS  150 (184)
Q Consensus        74 ~i~~~~~~~~~~--~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ivv~c~~g~rs  150 (184)
                      ..|.+++++.+.  ++.+|||||++.||..||||||+|+|..           ......... ..++++||+||.+|.+|
T Consensus         3 v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAi~~~~~-----------~~~~~~~~~~~~~~~~vv~~~~~g~~s   71 (101)
T d1yt8a2           3 VRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS-----------RLELEIHARVPRRDTPITVYDDGEGLA   71 (101)
T ss_dssp             EECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGG-----------GHHHHHHHHSCCTTSCEEEECSSSSHH
T ss_pred             cCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCCCccccccc-----------chhhhhhhcccccCceeeeccchhhhH
Confidence            457788887663  3488999999999999999999999984           222222222 35678999999999999


Q ss_pred             HHHHHHHHHccCCCeeeccccHHHHHhCCC
Q 029984          151 MMAATDLLNAGFAGITDIAGGFAAWRQNGL  180 (184)
Q Consensus       151 ~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~  180 (184)
                      ..++..|.+.||+||++|+||+.+|+++|.
T Consensus        72 ~~~~~~l~~~G~~nV~~l~GG~~~W~~aGg  101 (101)
T d1yt8a2          72 PVAAQRLHDLGYSDVALLDGGLSGWRNAGG  101 (101)
T ss_dssp             HHHHHHHHHTTCSSEEEETTHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCcEEEeCChHHHHHHCcC
Confidence            999999999999999999999999999873

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=2e-24  Score=154.30  Aligned_cols=100  Identities=27%  Similarity=0.509  Sum_probs=87.3

Q ss_pred             hCCCeEEEcCChhhHh----------------cCCCCCcEEecccccc-CCCCCCCHHHHHHHHhc--CCCCCeEEEEcC
Q 029984           85 QAGHRYLDVRTPEEFS----------------AGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDEIIVGCQ  145 (184)
Q Consensus        85 ~~~~~liDvR~~~e~~----------------~ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~  145 (184)
                      +++.+|||+|+++||.                .||||||+|+|+..+. ..+.+.+++.++..+..  ++++++||+||+
T Consensus        18 ~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~~~~~~~~~~~~~~~~~~~~~~~~gi~~d~~vV~yC~   97 (141)
T d1uara2          18 EGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCR   97 (141)
T ss_dssp             TTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHGGGTCCTTSEEEEECS
T ss_pred             CCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCccccccccccccccccccHHHHHHHHHHhCCCCCCeEEEEec
Confidence            3568899999999996                7999999999997654 45678888888888765  578999999999


Q ss_pred             CChhHHHHHHHHHH-ccCCCeeeccccHHHHHh-CCCCCCC
Q 029984          146 SGKRSMMAATDLLN-AGFAGITDIAGGFAAWRQ-NGLPTEP  184 (184)
Q Consensus       146 ~g~rs~~~~~~L~~-~G~~~v~~l~GG~~~W~~-~g~p~~~  184 (184)
                      +|.+|..+++.|.. +||+||++|+|||.+|.+ .++|+++
T Consensus        98 ~G~~As~~~~~l~~~~G~~~v~~ydGs~~eW~~~~~~Pv~~  138 (141)
T d1uara2          98 IAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAK  138 (141)
T ss_dssp             SHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBC
T ss_pred             CcchHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCccc
Confidence            99999999999986 799999999999999977 6999975

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.3e-24  Score=154.60  Aligned_cols=108  Identities=19%  Similarity=0.333  Sum_probs=92.5

Q ss_pred             ccCHHHHHHHHh-CCCeEEEcCChhhHh------------cCCCCCcEEecccccc-CCCCCCCHHHHHHHHhc--CCCC
Q 029984           74 SVPVRVAHELLQ-AGHRYLDVRTPEEFS------------AGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKH  137 (184)
Q Consensus        74 ~i~~~~~~~~~~-~~~~liDvR~~~e~~------------~ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~--l~~~  137 (184)
                      .++.+++.+.++ ++++|||+|+++||.            .||||||+|+|+..+. ..+.+..++.++.++..  ++++
T Consensus        12 i~~~~ev~~~l~~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~gi~~~   91 (144)
T d1rhsa2          12 LKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDLT   91 (144)
T ss_dssp             EECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCCTT
T ss_pred             eecHHHHHHHhcCCCcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcchhhhhhhhcccCCHHHHHHHHHHcCCCCC
Confidence            467788877765 458999999999995            6999999999987654 44677888888888764  6789


Q ss_pred             CeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCC
Q 029984          138 DEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP  181 (184)
Q Consensus       138 ~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p  181 (184)
                      ++||+||++|.+|..+++.|+.+||++|++|+|||.+|...+.|
T Consensus        92 ~~iI~yC~sG~~A~~~~~~l~~lG~~~v~~YdGsw~eW~~~~~p  135 (144)
T d1rhsa2          92 KPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP  135 (144)
T ss_dssp             SCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCG
T ss_pred             CCEEEEecccchHHHHHHHHHHcCCCCCEEeCCCHHHHhhcCCC
Confidence            99999999999999999999999999999999999999887643

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.91  E-value=7.9e-24  Score=149.53  Aligned_cols=114  Identities=18%  Similarity=0.147  Sum_probs=89.4

Q ss_pred             CCcccCHHHHHHHHhC-CCeEEEcCChhhHhcCCCCCcEEeccccccCCC-----CCCCHHHHHHHH--hcCCCCCeEEE
Q 029984           71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG-----MTKNLKFVEEVS--TRFRKHDEIIV  142 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~-----~~~~~~~~~~~~--~~l~~~~~ivv  142 (184)
                      .+..|+++++++++++ +++|||+|+++||..||||||+|+|+..+....     ............  .....+..+++
T Consensus         7 ~p~lIs~~el~~~l~~~~~viiDvR~~~ey~~gHIpgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (135)
T d1e0ca1           7 LPLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVV   86 (135)
T ss_dssp             SCSEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEE
T ss_pred             CCcEeeHHHHHHHhcCCCeEEEECCCHHHHhcccCccccccchhhhhhcccccchhhcchhhhhhhhccccccccccccc
Confidence            4566899999998875 588999999999999999999999986554221     223333333332  23455667777


Q ss_pred             EcC-CChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          143 GCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       143 ~c~-~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      ||. ++.++..+++.|+..||+||++|+||+.+|+++|+|+++
T Consensus        87 ~~~~~~~~~~~~~~~l~~~G~~~V~~l~GG~~~W~~~g~p~~~  129 (135)
T d1e0ca1          87 YDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSR  129 (135)
T ss_dssp             ECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             cccccCccchhhHHHHHhccCCCEEEecChHHHHHHCCCCCCC
Confidence            765 667888999999999999999999999999999999974

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3.3e-24  Score=154.31  Aligned_cols=111  Identities=19%  Similarity=0.200  Sum_probs=92.1

Q ss_pred             ccCHHHHHHHHhC-CCeEEEcC----------ChhhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHHhc--CC
Q 029984           74 SVPVRVAHELLQA-GHRYLDVR----------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FR  135 (184)
Q Consensus        74 ~i~~~~~~~~~~~-~~~liDvR----------~~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--l~  135 (184)
                      .++++.+.+.+++ +++|||+|          ..++|..||||||+|+++.....     .+++.+++.+...+..  ++
T Consensus         4 lVs~~wL~~~L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~Gi~   83 (147)
T d1urha1           4 FVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGVN   83 (147)
T ss_dssp             EECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTTCC
T ss_pred             cCcHHHHHHHhCCCCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccccccccccCCCHHHHHHHHHHhCcC
Confidence            3678888887765 58999999          34689999999999999864431     2355677888887766  57


Q ss_pred             CCCeEEEEcCC-ChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          136 KHDEIIVGCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       136 ~~~~ivv~c~~-g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      ++++||+||.+ +..+.++++.|+.+||+||++|+||+.+|+++|+|+++
T Consensus        84 ~~~~vVvY~~~~~~~A~r~~~~L~~~G~~~V~vLdGG~~~W~~~g~pv~~  133 (147)
T d1urha1          84 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEE  133 (147)
T ss_dssp             TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBB
T ss_pred             CCCeEEEEeCCCcccchhHHHHHHhhcccceEEeCChHHHHHHcCCCccC
Confidence            88999999975 55788999999999999999999999999999999974

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=1.3e-24  Score=155.71  Aligned_cols=112  Identities=16%  Similarity=0.198  Sum_probs=93.8

Q ss_pred             cccCHHHHHHHHhC-CCeEEEcCC-hhhHhcCCCCCcEEecccccc---CCCCCCCHHHHHHHHhcC--CCCCeEEEEcC
Q 029984           73 TSVPVRVAHELLQA-GHRYLDVRT-PEEFSAGHATGAINVPYMYRV---GSGMTKNLKFVEEVSTRF--RKHDEIIVGCQ  145 (184)
Q Consensus        73 ~~i~~~~~~~~~~~-~~~liDvR~-~~e~~~ghIpgAi~ip~~~~~---~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~  145 (184)
                      ..++++++++.+++ +++|||+|+ ..+|..||||||+|+++....   ..+++...+.++..+..+  +++++||+||+
T Consensus         7 ~lVs~~~l~~~l~~~~v~iiDvr~~~~~y~~gHIPgAi~~~~~~~~~~~~~~~l~~~~~l~~~~~~~Gi~~~~~iVvy~~   86 (143)
T d1uara1           7 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLYGD   86 (143)
T ss_dssp             GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEECH
T ss_pred             ccCcHHHHHHHhCCCCeEEEECCCCHHHHhcCCCCCcccccccccccccccccchhhHHHHHHhhhhccCCCceEEEecC
Confidence            45788999887765 488999995 789999999999999975432   224566778888887774  88999999998


Q ss_pred             CCh-hHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          146 SGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       146 ~g~-rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      +|. .|.++++.|+.+|+++|++|+||+.+|+.+|+|+++
T Consensus        87 ~~~~~a~~~~~~l~~~G~~~V~vldGG~~~W~~~g~p~~~  126 (143)
T d1uara1          87 KNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTT  126 (143)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBC
T ss_pred             CCcccchhHHHHHHHhCCceEEEEcCcHHHHHHCCCCccC
Confidence            665 677899999999999999999999999999999874

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.3e-23  Score=151.42  Aligned_cols=114  Identities=18%  Similarity=0.170  Sum_probs=94.0

Q ss_pred             CCcccCHHHHHHHHhC-----CCeEEEcC--------ChhhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHHh
Q 029984           71 VPTSVPVRVAHELLQA-----GHRYLDVR--------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVST  132 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~-----~~~liDvR--------~~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~  132 (184)
                      .+..++++.+++.+++     +++|||+|        ..++|..||||||+|++++.+..     .+.+...+.+...+.
T Consensus         6 ~~~lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   85 (149)
T d1rhsa1           6 YRALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVG   85 (149)
T ss_dssp             CCSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhcccccchhhhhhhhHHHHHHHh
Confidence            3466899999998863     47999999        46799999999999999865432     244566777777666


Q ss_pred             c--CCCCCeEEEEcCC---ChhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          133 R--FRKHDEIIVGCQS---GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       133 ~--l~~~~~ivv~c~~---g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      .  ++++++||+||.+   +..+.+++++|+.+||+||++|+||+.+|+++|+|+++
T Consensus        86 ~~Gi~~~~~vVvy~~~~~~~~~a~r~~w~L~~~G~~~V~vLdGG~~~W~~~G~pv~~  142 (149)
T d1rhsa1          86 SLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTS  142 (149)
T ss_dssp             HTTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             hhhccCCceeEEeeccCCcchhhhHHHHHHHHcCCCceEEeCCcHHHHHHCcCcccC
Confidence            5  5788999999964   45788999999999999999999999999999999974

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.6e-23  Score=143.66  Aligned_cols=102  Identities=24%  Similarity=0.367  Sum_probs=86.9

Q ss_pred             ccCHHHHHHHHh-CCCeEEEcCChhhHh-----------cCCCCCcEEeccccccCCCCCCCHHHHHHHHhc--CCCCCe
Q 029984           74 SVPVRVAHELLQ-AGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDE  139 (184)
Q Consensus        74 ~i~~~~~~~~~~-~~~~liDvR~~~e~~-----------~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~  139 (184)
                      .++.+++....+ ++.+|||+|+++||.           .||||||+|+|+......+.+.+.+.++..+..  ++++++
T Consensus         5 ~~~~~ev~~~~~~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   84 (120)
T d1urha2           5 VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDKP   84 (120)
T ss_dssp             BCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSC
T ss_pred             HccHHHHHHHhhCCCcEEEeCCCHHHcCcccCCcccccccccccccchhchhhcccccccCCHHHhhhhhhhcccCccCc
Confidence            345566665554 558999999999995           799999999999777677777888888877664  578899


Q ss_pred             EEEEcCCChhHHHHHHHHHHccCCCeeeccccHHHH
Q 029984          140 IIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW  175 (184)
Q Consensus       140 ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W  175 (184)
                      ||+||++|.||..+++.|+.+||+||++|+|||.+|
T Consensus        85 ii~yC~sG~~A~~~~~~L~~lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          85 IIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             EEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred             eEEEccchhHHHHHHHHHHHcCCCCceEcCCChhhC
Confidence            999999999999999999999999999999999998

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.3e-23  Score=148.19  Aligned_cols=96  Identities=22%  Similarity=0.233  Sum_probs=81.8

Q ss_pred             CCcccCHHHHHHHHhCC---CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHH--hcCCCCCeEEEEcC
Q 029984           71 VPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS--TRFRKHDEIIVGCQ  145 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~--~~l~~~~~ivv~c~  145 (184)
                      ....++++++.++++++   ++|||||++.||..||||||+|+|+.            .+....  ...+++++||+||.
T Consensus        21 ~~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghipgai~~p~~------------~~~~~~~~~~~~~~~~ivl~C~   88 (130)
T d1yt8a4          21 GVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGG------------QLVQETDHVASVRGARLVLVDD   88 (130)
T ss_dssp             TCEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTCEECCHH------------HHHHSHHHHCCSBTCEEEEECS
T ss_pred             CCcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccCCccccccc------------ccccccccccCCccceEEeecC
Confidence            35678999999998653   68999999999999999999999983            333322  23478899999999


Q ss_pred             CChhHHHHHHHHHHccCCCeeeccccHHHHHhCC
Q 029984          146 SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG  179 (184)
Q Consensus       146 ~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g  179 (184)
                      +|.||..++..|+++|| ++++|+||+.+|..++
T Consensus        89 ~G~rS~~aa~~L~~~G~-~v~~l~GG~~aw~~~~  121 (130)
T d1yt8a4          89 DGVRANMSASWLAQMGW-QVAVLDGLSEADFSER  121 (130)
T ss_dssp             SSSHHHHHHHHHHHTTC-EEEEECSCCGGGCCBC
T ss_pred             CCccHHHHHHHHHHcCC-CeEEEcCchHHHHHhc
Confidence            99999999999999999 6999999999997764

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.88  E-value=1.2e-23  Score=149.96  Aligned_cols=100  Identities=16%  Similarity=0.271  Sum_probs=81.9

Q ss_pred             HhCCCeEEEcCChhhHh-----------cCCCCCcEEeccccccC----CCCCCCHHHHHHHHhc-------CCCCCeEE
Q 029984           84 LQAGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVG----SGMTKNLKFVEEVSTR-------FRKHDEII  141 (184)
Q Consensus        84 ~~~~~~liDvR~~~e~~-----------~ghIpgAi~ip~~~~~~----~~~~~~~~~~~~~~~~-------l~~~~~iv  141 (184)
                      +.++.+|||+|+++||.           .||||||+|+|+.....    ...+.+++.+...+..       +.++++||
T Consensus         9 ~~p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV   88 (139)
T d1okga2           9 IPPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFV   88 (139)
T ss_dssp             SCTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSE
T ss_pred             CCCCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccchhhccccccccccCCHHHhhhhhhhhhhhccCCCCCCeEE
Confidence            35678999999999997           79999999999864432    2345667777666543       45678999


Q ss_pred             EEcCCChhHHHHHHHHHHccCCCeeeccccHHHHHh-CCCCCC
Q 029984          142 VGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-NGLPTE  183 (184)
Q Consensus       142 v~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~-~g~p~~  183 (184)
                      +||++|.+|+.+++.|+.+||++|++|+|||.+|.+ .+.|++
T Consensus        89 ~yC~sG~~Aa~~~~~L~~~G~~~v~vydGsw~eW~~~~~~Pv~  131 (139)
T d1okga2          89 FSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIM  131 (139)
T ss_dssp             EECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHH
T ss_pred             EECCCcHHHHHHHHHHHHhCCCCccCCCCCHHHHhCCCCCCee
Confidence            999999999999999999999999999999999965 577775

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=3.3e-23  Score=146.37  Aligned_cols=104  Identities=18%  Similarity=0.278  Sum_probs=82.8

Q ss_pred             CcccCHHHHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCC-hh
Q 029984           72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG-KR  149 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g-~r  149 (184)
                      ...|+++++.++++++ .+|||||+++||+.||||||+|+|+..+        .+.+......+++++++|+||..+ .+
T Consensus         7 v~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIpgAinip~~~~--------~~~~~~~~~~~~~~~~iv~~c~~~~~~   78 (132)
T d1t3ka_           7 ISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSF--------DDKISHLVQNVKDKDTLVFHSALSQVR   78 (132)
T ss_dssp             SEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSS--------STTHHHHHHTCCSCCEEEESSSCCSSS
T ss_pred             CCEECHHHHHHHHhCCCeEEEEccCHHHHHhccCcccceeeeecc--------cccccccccccccccceEEEecccccc
Confidence            4567777887777655 7899999999999999999999998532        234566666778889999999754 46


Q ss_pred             HHHHHHHHH--------HccCCCeeeccccHHHHHhCCCCCC
Q 029984          150 SMMAATDLL--------NAGFAGITDIAGGFAAWRQNGLPTE  183 (184)
Q Consensus       150 s~~~~~~L~--------~~G~~~v~~l~GG~~~W~~~g~p~~  183 (184)
                      +..++..|.        ..||+||++|+||+.+|.++|+|+.
T Consensus        79 ~~~aa~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv~  120 (132)
T d1t3ka_          79 GPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVC  120 (132)
T ss_dssp             HHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSC
T ss_pred             chHHHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCcc
Confidence            665555444        4699999999999999999999986

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.85  E-value=6.4e-22  Score=143.10  Aligned_cols=110  Identities=16%  Similarity=0.106  Sum_probs=89.4

Q ss_pred             cccCHHHHHHHHhCCCeEEEcC--------ChhhHhcCCCCCcEEeccccccC--------CCCCCCHHHHHHHHhc--C
Q 029984           73 TSVPVRVAHELLQAGHRYLDVR--------TPEEFSAGHATGAINVPYMYRVG--------SGMTKNLKFVEEVSTR--F  134 (184)
Q Consensus        73 ~~i~~~~~~~~~~~~~~liDvR--------~~~e~~~ghIpgAi~ip~~~~~~--------~~~~~~~~~~~~~~~~--l  134 (184)
                      ..|+++++.+.+.+ ++|||+|        ...+|..||||||++++++....        ..++.+++.+...+..  +
T Consensus         8 ~lvs~~~L~~~l~d-~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l~~~~~~~~~~~~lP~~~~~~~~l~~lGI   86 (156)
T d1okga1           8 VFLDPSEVADHLAE-YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDWCMANGM   86 (156)
T ss_dssp             CEECHHHHTTCGGG-SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHTTC
T ss_pred             cEeCHHHHHHhcCC-CEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhcccccCCCCCccccCCHHHHHHHHHhccc
Confidence            45788888876654 8999999        47899999999999998754321        1245677788887766  5


Q ss_pred             CCCCeEEEEcCC-C-hhHHHHHHHHHHccCCCeeeccccHHHHHhCCCCCCC
Q 029984          135 RKHDEIIVGCQS-G-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  184 (184)
Q Consensus       135 ~~~~~ivv~c~~-g-~rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  184 (184)
                      +++++||+||+. | ..+.+++|+|+.+|+ +|++|+||+.+|+++|+|+++
T Consensus        87 ~~~~~VVvYd~~~g~~~A~R~~w~L~~~G~-~v~iLdGG~~aW~~~G~pv~t  137 (156)
T d1okga1          87 AGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMES  137 (156)
T ss_dssp             SSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEEC
T ss_pred             cCCceEEEEeCCCCchHHHHHHHHHHHcCC-eeEEeCCCHHHHHHCCCCCCC
Confidence            889999999864 3 368899999999997 799999999999999999863

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.9e-20  Score=132.70  Aligned_cols=97  Identities=19%  Similarity=0.316  Sum_probs=77.9

Q ss_pred             CCcccCHHHHHHHHhC-------CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc------CCCC
Q 029984           71 VPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR------FRKH  137 (184)
Q Consensus        71 ~~~~i~~~~~~~~~~~-------~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~------l~~~  137 (184)
                      ..+.|+++++.+++++       +++|||||++.||..|||+||+|+|..           +.+...+..      ..++
T Consensus        21 ~~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~~-----------~~~~~~l~~~~~~~~~~~~   89 (161)
T d1c25a_          21 DLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHME-----------EEVEDFLLKKPIVPTDGKR   89 (161)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHTTTSCCCCCTTSE
T ss_pred             CCCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCcH-----------HHHHHHHhhhhhhhhhccC
Confidence            4567999999999874       478999999999999999999999973           444443322      1234


Q ss_pred             CeEEEEcC-CChhHHHHHHHHHHc----------cCCCeeeccccHHHHHhC
Q 029984          138 DEIIVGCQ-SGKRSMMAATDLLNA----------GFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       138 ~~ivv~c~-~g~rs~~~~~~L~~~----------G~~~v~~l~GG~~~W~~~  178 (184)
                      ..||+||. ++.|+..++..|+..          ||++|++|+||+.+|.+.
T Consensus        90 ~~vV~yc~~s~~rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~  141 (161)
T d1c25a_          90 VIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK  141 (161)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHH
T ss_pred             CeEEEEeccccccHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHH
Confidence            56889997 788999999988764          999999999999999764

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.8e-18  Score=127.25  Aligned_cols=96  Identities=20%  Similarity=0.306  Sum_probs=76.5

Q ss_pred             CcccCHHHHHHHHhC-------CCeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHh-------cCCCC
Q 029984           72 PTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-------RFRKH  137 (184)
Q Consensus        72 ~~~i~~~~~~~~~~~-------~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~-------~l~~~  137 (184)
                      -..|+++++.+++++       +++|||+|++.||..|||+||+|+|..           +.+.....       ...+.
T Consensus        22 ~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~~-----------~~~~~~~~~~~~~~~~~~~~   90 (174)
T d1ymka1          22 LKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLDKR   90 (174)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHTTTCCC----CE
T ss_pred             CcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCch-----------HHHHHHHHHhhhhhhhhccC
Confidence            456999999999974       378999999999999999999999983           33333321       12445


Q ss_pred             CeEEEEcC-CChhHHHHHHHHHHc----------cCCCeeeccccHHHHHhC
Q 029984          138 DEIIVGCQ-SGKRSMMAATDLLNA----------GFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       138 ~~ivv~c~-~g~rs~~~~~~L~~~----------G~~~v~~l~GG~~~W~~~  178 (184)
                      +.||+||. ++.++..++..|++.          ||++|++|+||+.+|.+.
T Consensus        91 ~~vV~yc~~s~~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~  142 (174)
T d1ymka1          91 VILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ  142 (174)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTT
T ss_pred             ceEEEEeCCCCchHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHh
Confidence            67999997 567898999888753          999999999999999764

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.4e-18  Score=118.24  Aligned_cols=105  Identities=8%  Similarity=0.059  Sum_probs=72.3

Q ss_pred             ccCHHHHHHHHhCC---CeEEEcCChhhHhcCCCCCcEEeccccccCCCCC-----CCHHHHHHHHhcCCCCCeEEEEcC
Q 029984           74 SVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT-----KNLKFVEEVSTRFRKHDEIIVGCQ  145 (184)
Q Consensus        74 ~i~~~~~~~~~~~~---~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~ivv~c~  145 (184)
                      .|+++++.+++++.   ++|||+|+++||..+|||||+|||...+......     ..+......+....+.+.||+||.
T Consensus         2 ~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~gAinip~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~iV~yd~   81 (135)
T d2gwfa1           2 AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLLDW   81 (135)
T ss_dssp             EECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEEEECS
T ss_pred             eECHHHHHHHHhcCCCCEEEEEecCCccccCCccCCeEEeCHHHcccccchhhhhhhhhHHHHHHHhccCCCCeEEEEeC
Confidence            47889999998753   8899999999999999999999998644322110     011222233344567788999998


Q ss_pred             CCh-hH---HH----HHHHHH-----HccCCCeeeccccHHHHHhC
Q 029984          146 SGK-RS---MM----AATDLL-----NAGFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       146 ~g~-rs---~~----~~~~L~-----~~G~~~v~~l~GG~~~W~~~  178 (184)
                      .+. ++   ..    ..+.|.     ..|..+|++|+||+++|.+.
T Consensus        82 ~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~  127 (135)
T d2gwfa1          82 FSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  127 (135)
T ss_dssp             SCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHhcccccccCCCcEEEEechHHHHHHh
Confidence            643 22   11    223333     24677899999999999886

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.2e-17  Score=115.68  Aligned_cols=105  Identities=20%  Similarity=0.185  Sum_probs=71.8

Q ss_pred             CcccCHHHHHHHHh---CCCeEEEcCChhhHhcCCCCCcEEeccccccC----------CCCCCCHHHHHHHHhcCCCCC
Q 029984           72 PTSVPVRVAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVG----------SGMTKNLKFVEEVSTRFRKHD  138 (184)
Q Consensus        72 ~~~i~~~~~~~~~~---~~~~liDvR~~~e~~~ghIpgAi~ip~~~~~~----------~~~~~~~~~~~~~~~~l~~~~  138 (184)
                      ...++++.+++.++   ++++|||+|++.||..||||||+|+++.....          ...... ......+....+++
T Consensus        15 ~~~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~gAini~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   93 (154)
T d1hzma_          15 AISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTR-GEDRDRFTRRCGTD   93 (154)
T ss_dssp             SSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTT-SHHHHHHHHSTTSS
T ss_pred             cCccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCCCCcccCcHHHHhhhccCCcccccccCCc-HHHHHHHhhcCCCC
Confidence            33467777877774   34899999999999999999999999753321          011222 23333344456677


Q ss_pred             eEEEEcCCCh----------hHHHHHHHHHHccCCCeeeccccHHHHHhC
Q 029984          139 EIIVGCQSGK----------RSMMAATDLLNAGFAGITDIAGGFAAWRQN  178 (184)
Q Consensus       139 ~ivv~c~~g~----------rs~~~~~~L~~~G~~~v~~l~GG~~~W~~~  178 (184)
                      .||+||..+.          +.......|...|+ +|++|+||+++|.+.
T Consensus        94 ~VVvYd~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~v~iL~GG~~~w~~~  142 (154)
T d1hzma_          94 TVVLYDESSSDWNENTGGESLLGLLLKKLKDEGC-RAFYLEGGFSKFQAE  142 (154)
T ss_dssp             CEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTC-CCEECCCCHHHHHHH
T ss_pred             eEEEEcCCCchhhhhHHHHHHHHHHHHHHHhcCC-eEEEEeCcHHHHHHH
Confidence            8999997643          22334445555565 799999999999875

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.28  E-value=0.018  Score=39.13  Aligned_cols=87  Identities=8%  Similarity=-0.031  Sum_probs=49.2

Q ss_pred             CHHHHHHHHhCC-CeEEEcCChhhHhc-------CCCCCcEEeccccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcC
Q 029984           76 PVRVAHELLQAG-HRYLDVRTPEEFSA-------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQ  145 (184)
Q Consensus        76 ~~~~~~~~~~~~-~~liDvR~~~e~~~-------ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~  145 (184)
                      +.+++..+.+-+ -.|||+|+..|...       ..| .-+|+|.............+.+......+  ..+.|++|+|.
T Consensus        22 t~~~~~~L~~lgIktIidLr~~~e~~~~~~~~~~~gi-~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlvHC~  100 (151)
T d1xria_          22 DSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGI-RLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCK  100 (151)
T ss_dssp             CHHHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTC-EEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECS
T ss_pred             CHHHHHHHHHCCCCEEEECCCcchhhcccchhhhcCc-eEeecCccccccccccccHHHHHHHHHHHhcCCCCCEEEEcC
Confidence            456666655556 57999998665321       112 23566653222222223345555554433  35679999999


Q ss_pred             CCh-hHHHHH-HHHHHccCC
Q 029984          146 SGK-RSMMAA-TDLLNAGFA  163 (184)
Q Consensus       146 ~g~-rs~~~~-~~L~~~G~~  163 (184)
                      .|. |+..++ -.|...|+.
T Consensus       101 ~GkdRTG~v~a~~l~~~g~~  120 (151)
T d1xria_         101 RGKHRTGCLVGCLRKLQKWC  120 (151)
T ss_dssp             SSSSHHHHHHHHHHHHTTBC
T ss_pred             CCchHHHHHHHHHHHHcCCC
Confidence            885 766555 444556875

>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Kinase associated phosphatase (kap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.14  Score=35.48  Aligned_cols=84  Identities=19%  Similarity=0.196  Sum_probs=46.3

Q ss_pred             HHHHHHHHhCC-CeEEEcCChhhHhcCCCCC-----------cEEeccccccCCCCCCCHHHHHHHHhcCCCCCeEEEEc
Q 029984           77 VRVAHELLQAG-HRYLDVRTPEEFSAGHATG-----------AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC  144 (184)
Q Consensus        77 ~~~~~~~~~~~-~~liDvR~~~e~~~ghIpg-----------Ai~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c  144 (184)
                      .++++.+.+.+ ..||.+-+..|+..-.++.           -+++|+.+...+....-.+.++.+.+.+..+++|+|+|
T Consensus        37 ~~dl~~L~~~gi~~Vv~L~~~~E~~~~~~~~~~~~~~~~gi~~~~~p~~D~~~p~~~~~~~~~~~i~~~l~~~~~V~VHC  116 (176)
T d1fpza_          37 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKTLIHS  116 (176)
T ss_dssp             HHHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCTTCCCCHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             HHHHHHHHhCCCCEEEEeCChhhhhhcCCCcHHHHHHHcCCEEEeCCccCCCchhhHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            45666666656 5688888888776544442           24556532211111001123333333456678899999


Q ss_pred             CCCh-hHHHH-HHHHHHc
Q 029984          145 QSGK-RSMMA-ATDLLNA  160 (184)
Q Consensus       145 ~~g~-rs~~~-~~~L~~~  160 (184)
                      ..|. |+..+ +..|...
T Consensus       117 ~~G~gRtg~v~~~~Li~~  134 (176)
T d1fpza_         117 YGGLGRSCLVAACLLLYL  134 (176)
T ss_dssp             SSSSSHHHHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHH
Confidence            9775 77654 3445443

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=91.77  E-value=0.076  Score=37.04  Aligned_cols=48  Identities=10%  Similarity=0.156  Sum_probs=39.4

Q ss_pred             HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984          125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  173 (184)
Q Consensus       125 ~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~  173 (184)
                      +.++++.+.+.++.+++|||.+-..+...+..|.+.|+. +..|.|++.
T Consensus        19 dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~-a~~~Hg~~~   66 (174)
T d1c4oa2          19 DLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIR-ARYLHHELD   66 (174)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTCC
T ss_pred             HHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCc-eEEEecccc
Confidence            455565555567889999999998999999999999995 778888865

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Mycobacterial PtpB-like
domain: Phosphotyrosine protein phosphatase PtpB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.95  E-value=0.64  Score=34.14  Aligned_cols=30  Identities=23%  Similarity=0.357  Sum_probs=21.6

Q ss_pred             CCCCeEEEEcCCCh-hHH-HHHHHHHHccCCC
Q 029984          135 RKHDEIIVGCQSGK-RSM-MAATDLLNAGFAG  164 (184)
Q Consensus       135 ~~~~~ivv~c~~g~-rs~-~~~~~L~~~G~~~  164 (184)
                      ..+.|++|+|..|. |.. .++-.|..+|++.
T Consensus       148 ~~~~pvL~HCtaGKDRTG~~aallL~llGV~~  179 (272)
T d1ywfa1         148 AAGRPVLTHCFAGKDRTGFVVALVLEAVGLDR  179 (272)
T ss_dssp             HTTCCEEEECSSSSSHHHHHHHHHHHHTTCCH
T ss_pred             ccCCCEEEecCCCCcchHHHHHHHHHHcCCCH
Confidence            46789999999887 444 4556667778853

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pac-1 [TaxId: 9606]

Probab=88.13  E-value=0.62  Score=30.72  Aligned_cols=84  Identities=12%  Similarity=0.001  Sum_probs=41.2

Q ss_pred             HHHHHHhCC-CeEEEcCChhhHhcCCCCCcEEeccccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCCh-hHHHHH-
Q 029984           79 VAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSGK-RSMMAA-  154 (184)
Q Consensus        79 ~~~~~~~~~-~~liDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g~-rs~~~~-  154 (184)
                      +...+.+.+ -.||++-+.......+...-.++|..+......... .+..+.....+..+.+|+|+|..|. ||..++ 
T Consensus        21 ~~~~L~~~gI~~Iin~~~~~~~~~~~~~~y~~i~i~D~~~~~i~~~~~~~~~~i~~~~~~~~~VlVHC~~G~sRS~~v~~  100 (145)
T d1m3ga_          21 DLQGLQACGITAVLNVSASCPNHFEGLFRYKSIPVEDNQMVEISAWFQEAIGFIDWVKNSGGRVLVHSQAGISRSATICL  100 (145)
T ss_dssp             HHHHHHHHTCSEEEECSSSSSEEECSSSEEEECCCCCSTTCCCTTSHHHHHHHHHHHHHTTCCEEECCSSSSSHHHHHHH
T ss_pred             CHHHHHHcCCcEEEEecCCCCcCCCCceEEEEEeccCCchhhHHHHHHHHHHHHHHhhccCceEEEEcccccccHHHHHH
Confidence            333444445 458888754322222222335677643222222211 1222222233346778999999876 776433 


Q ss_pred             -HHHHHccC
Q 029984          155 -TDLLNAGF  162 (184)
Q Consensus       155 -~~L~~~G~  162 (184)
                       ..+...|+
T Consensus       101 aYLm~~~~~  109 (145)
T d1m3ga_         101 AYLMQSRRV  109 (145)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHhCC
Confidence             33344455

>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Proline directed phosphatase CDC14b2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.68  E-value=3.1  Score=28.39  Aligned_cols=81  Identities=11%  Similarity=0.060  Sum_probs=43.4

Q ss_pred             HHHHHHHhCC-CeEEEcCCh----hhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHHhc-CCCCCeEEEEcCCCh-hH
Q 029984           78 RVAHELLQAG-HRYLDVRTP----EEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FRKHDEIIVGCQSGK-RS  150 (184)
Q Consensus        78 ~~~~~~~~~~-~~liDvR~~----~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ivv~c~~g~-rs  150 (184)
                      +.+..+...+ ..||++.+.    ..+..-+|. -+++|..+.    .....+.+...... ...+.+|+|+|..|. |+
T Consensus        49 ~~l~~l~~~gi~~Ii~l~~~~~~~~~~~~~gi~-~~~~p~~D~----~~P~~~~i~~~i~~~~~~~~~V~VHC~~G~gRs  123 (182)
T d1ohea2          49 TYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFD-HHDLFFADG----STPTDAIVKEFLDICENAEGAIAVHSKAGLGRT  123 (182)
T ss_dssp             HHHHHHHHTTEEEEEECSCCSSCTHHHHTTTCE-EEECCCCTT----CCCCHHHHHHHHHHHHSCSSEEEEECSSSSHHH
T ss_pred             HHHHHHHhcCCCEEEEecCCCcCccccccCCcE-EEecCCCCC----CCcCHHHHHHHHHHHHcCCCcEEEEeCCCCcch
Confidence            3455555566 468898753    333333332 245555321    12233444444333 356789999999887 77


Q ss_pred             HH--HHHHHHHccCC
Q 029984          151 MM--AATDLLNAGFA  163 (184)
Q Consensus       151 ~~--~~~~L~~~G~~  163 (184)
                      ..  ++..+...|++
T Consensus       124 gt~~a~yL~~~~~~~  138 (182)
T d1ohea2         124 GTLIACYIMKHYRMT  138 (182)
T ss_dssp             HHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHcCCC
Confidence            63  33444555763

>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=85.42  E-value=0.31  Score=33.85  Aligned_cols=48  Identities=15%  Similarity=0.251  Sum_probs=38.1

Q ss_pred             HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984          125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  173 (184)
Q Consensus       125 ~~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~  173 (184)
                      +.+.+....+.++..++++|++-..+..++..|...|+. +..+.|++.
T Consensus        19 ~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~-~~~~hg~~~   66 (181)
T d1t5la2          19 DLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIK-VAYLHSEIK   66 (181)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCC-EEEECSSCC
T ss_pred             HHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcc-eeEecCCcc
Confidence            455555555556778999999988999999999999995 777888764

>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Arsenate reductase ArsC
species: Bacillus subtilis [TaxId: 1423]

Probab=83.65  E-value=0.42  Score=31.20  Aligned_cols=38  Identities=21%  Similarity=0.043  Sum_probs=29.4

Q ss_pred             CCeEEEEcCC-ChhHHHHHHHHHHccCCCeeeccccHHH
Q 029984          137 HDEIIVGCQS-GKRSMMAATDLLNAGFAGITDIAGGFAA  174 (184)
Q Consensus       137 ~~~ivv~c~~-g~rs~~~~~~L~~~G~~~v~~l~GG~~~  174 (184)
                      ++.|+|+|.+ -.||..+-..|+..+-+++.+..+|+..
T Consensus         1 ~K~ILFVC~gN~cRSpmAEai~~~~~~~~~~~~Sag~~~   39 (137)
T d1jl3a_           1 NKIIYFLCTGNSCRSQMAEGWAKQYLGDEWKVYSAGIEA   39 (137)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHSCTTEEEEEEESSC
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhCCCCeeeccccccc
Confidence            4679999975 3499999888988877777777777653

>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.51  E-value=1.1  Score=30.24  Aligned_cols=47  Identities=15%  Similarity=0.220  Sum_probs=34.8

Q ss_pred             HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHHH
Q 029984          126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA  174 (184)
Q Consensus       126 ~~~~~~~~l~~~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~~  174 (184)
                      .+.+++..+.. ..+||||++-..+...+..|.+.|++ +..+.|++..
T Consensus        17 ~L~~ll~~~~~-~k~iIF~~~~~~~~~l~~~L~~~~~~-~~~ihg~~~~   63 (168)
T d1t5ia_          17 KLFDLLDVLEF-NQVVIFVKSVQRCIALAQLLVEQNFP-AIAIHRGMPQ   63 (168)
T ss_dssp             HHHHHHHHSCC-SSEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTSCH
T ss_pred             HHHHHHHhCCC-CeEEEEEeeeecchhhhhhhcccccc-ccccccccch
Confidence            34444444544 45889999988888899999999995 7788888654

>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=81.21  E-value=0.52  Score=31.12  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             CCeEEEEcCCChhHHHHHHHHHHccCCCeeeccccHH
Q 029984          137 HDEIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  173 (184)
Q Consensus       137 ~~~ivv~c~~g~rs~~~~~~L~~~G~~~v~~l~GG~~  173 (184)
                      ..+.||||++-..+..++..|.+.|+. +..+.+|+.
T Consensus        35 ~~k~IVFc~t~~~ae~la~~L~~~G~~-~~~~H~~~~   70 (138)
T d1jr6a_          35 GGRHLIFCHSKKKCDELAAKLVALGIN-AVAYYRGLD   70 (138)
T ss_dssp             TSCEEEECSCHHHHHHHHHHHHHHTCE-EEEECTTCC
T ss_pred             CCCEEEEeCcHHHHHHHHHHHhccccc-hhhhhccch
Confidence            456899999999999999999999995 666777643