Citrus Sinensis ID: 030000
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 184 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NZW8 | 186 | ADP-ribosylation factor-l | no | no | 1.0 | 0.989 | 0.625 | 3e-69 | |
| Q66HA6 | 186 | ADP-ribosylation factor-l | yes | no | 1.0 | 0.989 | 0.619 | 4e-69 | |
| Q9CQW2 | 186 | ADP-ribosylation factor-l | yes | no | 1.0 | 0.989 | 0.619 | 4e-69 | |
| Q9NVJ2 | 186 | ADP-ribosylation factor-l | yes | no | 1.0 | 0.989 | 0.619 | 4e-69 | |
| Q2KI07 | 186 | ADP-ribosylation factor-l | yes | no | 1.0 | 0.989 | 0.614 | 2e-68 | |
| Q5ZKQ8 | 186 | ADP-ribosylation factor-l | no | no | 1.0 | 0.989 | 0.608 | 4e-68 | |
| Q5R6E7 | 186 | ADP-ribosylation factor-l | yes | no | 1.0 | 0.989 | 0.614 | 5e-68 | |
| Q4R4S4 | 186 | ADP-ribosylation factor-l | N/A | no | 1.0 | 0.989 | 0.608 | 5e-68 | |
| Q8VEH3 | 186 | ADP-ribosylation factor-l | no | no | 1.0 | 0.989 | 0.603 | 8e-68 | |
| Q96BM9 | 186 | ADP-ribosylation factor-l | no | no | 1.0 | 0.989 | 0.603 | 1e-67 |
| >sp|Q6NZW8|AR8BA_DANRE ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 260 bits (665), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 115/184 (62%), Positives = 152/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ ++ +L+W +SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALINRLLDWFKSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y+VDAADR+ V +R+ELH LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Danio rerio (taxid: 7955) |
| >sp|Q66HA6|ARL8B_RAT ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 114/184 (61%), Positives = 151/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Rattus norvegicus (taxid: 10116) |
| >sp|Q9CQW2|ARL8B_MOUSE ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 114/184 (61%), Positives = 151/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Mus musculus (taxid: 10090) |
| >sp|Q9NVJ2|ARL8B_HUMAN ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 114/184 (61%), Positives = 151/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
May play a role in lysosome motility (PubMed:16537643). May play a role in chromosome segregation (PubMed:15331635). Homo sapiens (taxid: 9606) |
| >sp|Q2KI07|ARL8B_BOVIN ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (659), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 113/184 (61%), Positives = 151/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WD+GGQ RF++MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Bos taurus (taxid: 9913) |
| >sp|Q5ZKQ8|ARL8A_CHICK ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 112/184 (60%), Positives = 151/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W R+LF+K+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+T
Sbjct: 2 LALFNKLLDWFRALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIKLWD+GGQ RFR+MWERYCRGVSAI+Y+VDAAD++ + +++ELH LL KP L
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Gallus gallus (taxid: 9031) |
| >sp|Q5R6E7|ARL8B_PONAB ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 113/184 (61%), Positives = 150/184 (81%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y++DAA R+ + +R+ELH LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAAYREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Pongo abelii (taxid: 9601) |
| >sp|Q4R4S4|ARL8B_MACFA ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 112/184 (60%), Positives = 151/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WD+GGQ R+R+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRYRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI++S
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQYS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Macaca fascicularis (taxid: 9541) |
| >sp|Q8VEH3|ARL8A_MOUSE ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 111/184 (60%), Positives = 152/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W ++LF+K+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+T
Sbjct: 2 IALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIKLWD+GGQ RFR+MWERYCRGVSAI+Y+VDAAD++ + +++ELH LL KP L
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D + AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Mus musculus (taxid: 10090) |
| >sp|Q96BM9|ARL8A_HUMAN ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 255 bits (651), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 111/184 (60%), Positives = 151/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W ++LF+K+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+T
Sbjct: 2 IALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIKLWD+GGQ RFR+MWERYCRGVSAI+Y+VDAAD++ + +++ELH LL KP L
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 184 | ||||||
| 255580381 | 184 | ADP-ribosylation factor, putative [Ricin | 1.0 | 1.0 | 0.945 | 4e-99 | |
| 371501276 | 184 | ADP-ribosylation factor-like 8d [Nicotia | 1.0 | 1.0 | 0.923 | 7e-97 | |
| 388516671 | 184 | unknown [Lotus japonicus] | 1.0 | 1.0 | 0.929 | 1e-96 | |
| 356553280 | 184 | PREDICTED: ADP-ribosylation factor-like | 1.0 | 1.0 | 0.923 | 3e-96 | |
| 224069270 | 188 | predicted protein [Populus trichocarpa] | 0.994 | 0.973 | 0.923 | 4e-96 | |
| 351722553 | 184 | uncharacterized protein LOC100305570 [Gl | 1.0 | 1.0 | 0.923 | 4e-96 | |
| 357491973 | 184 | ADP-ribosylation factor-like protein [Me | 0.994 | 0.994 | 0.928 | 8e-96 | |
| 18421676 | 184 | ADP-ribosylation factor-like A1A [Arabid | 0.994 | 0.994 | 0.912 | 1e-95 | |
| 357137842 | 184 | PREDICTED: ADP-ribosylation factor-like | 0.994 | 0.994 | 0.918 | 2e-95 | |
| 449445077 | 184 | PREDICTED: ADP-ribosylation factor-like | 0.994 | 0.994 | 0.918 | 3e-95 |
| >gi|255580381|ref|XP_002531018.1| ADP-ribosylation factor, putative [Ricinus communis] gi|223529416|gb|EEF31378.1| ADP-ribosylation factor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 174/184 (94%), Positives = 181/184 (98%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MG LDS+LNWLRSLFFKQEMELSL+GLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLLDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNAVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELH+L++KPSLS
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHDLVVKPSLS 120
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDS+NID VIDWLIKHS
Sbjct: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSVNIDVVIDWLIKHS 180
Query: 181 KTAK 184
KTAK
Sbjct: 181 KTAK 184
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|371501276|dbj|BAL44265.1| ADP-ribosylation factor-like 8d [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 358 bits (918), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 170/184 (92%), Positives = 178/184 (96%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MG DS+LNWLRSLFFKQEMELSL+GLQNAGKTSLVN IATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS+PI R+ELHELL KPSLS
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSIPITRTELHELLKKPSLS 120
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIPLL+LGNKIDKSEALS+QALVDQLGL+S TDREVCCYMISCKDS+NIDAVIDWLIKHS
Sbjct: 121 GIPLLILGNKIDKSEALSQQALVDQLGLDSTTDREVCCYMISCKDSVNIDAVIDWLIKHS 180
Query: 181 KTAK 184
KTAK
Sbjct: 181 KTAK 184
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388516671|gb|AFK46397.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 171/184 (92%), Positives = 178/184 (96%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MG DS+L+WLRSLFFKQEMELSL+GLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWDSMLDWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIKLWDLGGQRRFRTMWERYCRGVSAI+YVVDAADRDSVPI+RSELHEL KPSLS
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIVYVVDAADRDSVPISRSELHELFTKPSLS 120
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIPLLVLGNKIDKSEALSKQALVDQLGLESI DREVCCYMISCKDS+NIDAVIDWLIKHS
Sbjct: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESIKDREVCCYMISCKDSVNIDAVIDWLIKHS 180
Query: 181 KTAK 184
TAK
Sbjct: 181 TTAK 184
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553280|ref|XP_003544985.1| PREDICTED: ADP-ribosylation factor-like protein 8B-A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 170/184 (92%), Positives = 177/184 (96%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MG DS LNWLRSLFFKQEMELSL+GLQNAGKTSLVN IATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWDSFLNWLRSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIKLWDLGGQRRFR+MWERYCRGVSAI+YVVDAADRDSVPI+RSELH+LL KPSLS
Sbjct: 61 KGNVTIKLWDLGGQRRFRSMWERYCRGVSAIVYVVDAADRDSVPISRSELHDLLTKPSLS 120
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIPLLVLGNKIDKSEALSKQALVDQLGLESI DREVCCYMISCKDS+N+D VIDWLIKHS
Sbjct: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESIKDREVCCYMISCKDSVNLDVVIDWLIKHS 180
Query: 181 KTAK 184
KTAK
Sbjct: 181 KTAK 184
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069270|ref|XP_002302942.1| predicted protein [Populus trichocarpa] gi|222844668|gb|EEE82215.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 355 bits (911), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 169/183 (92%), Positives = 176/183 (96%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MG DS+LNWLRSLFFKQEMELSL+GLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLFDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVP++RSELH+LL KPSLS
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPLSRSELHDLLTKPSLS 120
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIPLLV+GNKIDK EA SKQALVDQLGLESITDREVCCYMISCKDS NID VIDWLIKHS
Sbjct: 121 GIPLLVVGNKIDKPEAFSKQALVDQLGLESITDREVCCYMISCKDSTNIDIVIDWLIKHS 180
Query: 181 KTA 183
KTA
Sbjct: 181 KTA 183
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351722553|ref|NP_001237248.1| uncharacterized protein LOC100305570 [Glycine max] gi|255625945|gb|ACU13317.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 355 bits (911), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 170/184 (92%), Positives = 176/184 (95%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MG DS LNWLRSLFFKQEMELSL+GLQNAGKTSLVN IATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWDSFLNWLRSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIKLWDLGGQRRFR+MWERYCRGVSAI+YVVDAADRDSVPI+RSELH+LL KPSLS
Sbjct: 61 KGNVTIKLWDLGGQRRFRSMWERYCRGVSAIVYVVDAADRDSVPISRSELHDLLTKPSLS 120
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
IPLLVLGNKIDKSEALSKQALVDQLGLESI DREVCCYMISCKDS+NID VIDWLIKHS
Sbjct: 121 AIPLLVLGNKIDKSEALSKQALVDQLGLESIKDREVCCYMISCKDSVNIDVVIDWLIKHS 180
Query: 181 KTAK 184
KTAK
Sbjct: 181 KTAK 184
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357491973|ref|XP_003616274.1| ADP-ribosylation factor-like protein [Medicago truncatula] gi|355517609|gb|AES99232.1| ADP-ribosylation factor-like protein [Medicago truncatula] gi|388507258|gb|AFK41695.1| unknown [Medicago truncatula] gi|388510186|gb|AFK43159.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 170/183 (92%), Positives = 177/183 (96%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MG DS+LNWLRSLFFKQEMELSL+GLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIKLWDLGGQRRFRTMWERYCRGVSAI+YVVDAADRDSVPI RSEL+ELL KPSL+
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIVYVVDAADRDSVPITRSELNELLTKPSLN 120
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIPLLVLGNKIDKSEALSKQALVDQLGLESI DREVCCYMISCKDS+NID VIDWLIKHS
Sbjct: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESIKDREVCCYMISCKDSVNIDVVIDWLIKHS 180
Query: 181 KTA 183
KTA
Sbjct: 181 KTA 183
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18421676|ref|NP_568553.1| ADP-ribosylation factor-like A1A [Arabidopsis thaliana] gi|17065164|gb|AAL32736.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gi|21387117|gb|AAM47962.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gi|21553410|gb|AAM62503.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gi|332006836|gb|AED94219.1| ADP-ribosylation factor-like A1A [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 167/183 (91%), Positives = 179/183 (97%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MG DS+LNWLRSLFFKQEMELSL+GLQNAGKTSLVN IATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WDLGGQRRFRTMWERYCRGVSAI+YV+DAADRDSVPI+RSEL++LL KPSL+
Sbjct: 61 KGNVTIKIWDLGGQRRFRTMWERYCRGVSAIVYVIDAADRDSVPISRSELNDLLTKPSLN 120
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIPLL+LGNKIDKSEALSKQALVDQLGLES+TDREVCCYMISCKDSINIDAVIDWLIKHS
Sbjct: 121 GIPLLILGNKIDKSEALSKQALVDQLGLESVTDREVCCYMISCKDSINIDAVIDWLIKHS 180
Query: 181 KTA 183
+TA
Sbjct: 181 RTA 183
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357137842|ref|XP_003570508.1| PREDICTED: ADP-ribosylation factor-like protein 8A-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 168/183 (91%), Positives = 177/183 (96%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MG DS+LNWLRSLFFKQEMELSL+GLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIA+SELH+LL K SL+
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIAKSELHDLLTKQSLA 120
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIPLL+LGNKIDKSEALSKQALVDQLGLESI DREVCCYMISCKD++NID VIDWLIKHS
Sbjct: 121 GIPLLILGNKIDKSEALSKQALVDQLGLESIKDREVCCYMISCKDTVNIDVVIDWLIKHS 180
Query: 181 KTA 183
KTA
Sbjct: 181 KTA 183
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445077|ref|XP_004140300.1| PREDICTED: ADP-ribosylation factor-like protein 8A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 168/183 (91%), Positives = 177/183 (96%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MGF DSILNWLRSLFFKQEMELSL+GLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIKLWDLGGQRRFRTMWERYCRGV+AI+YVVD+ADRDSVPI++SELHELL KPSLS
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIVYVVDSADRDSVPISKSELHELLTKPSLS 120
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIPLLVLGNKIDKSEALSKQ+LVD L LE+I DREVCCYMISCKDSINID VIDWLIKHS
Sbjct: 121 GIPLLVLGNKIDKSEALSKQSLVDLLELETIRDREVCCYMISCKDSINIDVVIDWLIKHS 180
Query: 181 KTA 183
KTA
Sbjct: 181 KTA 183
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 184 | ||||||
| TAIR|locus:2151734 | 184 | ARLA1A "ADP-ribosylation facto | 0.994 | 0.994 | 0.912 | 1.2e-88 | |
| TAIR|locus:2097355 | 184 | ARLA1C "ADP-ribosylation facto | 0.989 | 0.989 | 0.807 | 3e-78 | |
| TAIR|locus:2158591 | 184 | ARLA1D "ADP-ribosylation facto | 0.994 | 0.994 | 0.797 | 4.8e-78 | |
| UNIPROTKB|F2Z4I5 | 186 | ARL8B "ADP-ribosylation factor | 1.0 | 0.989 | 0.619 | 1.2e-63 | |
| UNIPROTKB|E2RE13 | 186 | ARL8B "Uncharacterized protein | 1.0 | 0.989 | 0.619 | 1.2e-63 | |
| UNIPROTKB|Q9NVJ2 | 186 | ARL8B "ADP-ribosylation factor | 1.0 | 0.989 | 0.619 | 1.2e-63 | |
| MGI|MGI:1914416 | 186 | Arl8b "ADP-ribosylation factor | 1.0 | 0.989 | 0.619 | 1.2e-63 | |
| RGD|1562830 | 186 | Arl8b "ADP-ribosylation factor | 1.0 | 0.989 | 0.619 | 1.2e-63 | |
| ZFIN|ZDB-GENE-030131-9370 | 186 | arl8ba "ADP-ribosylation facto | 1.0 | 0.989 | 0.625 | 1.6e-63 | |
| UNIPROTKB|Q2KI07 | 186 | ARL8B "ADP-ribosylation factor | 1.0 | 0.989 | 0.614 | 3.3e-63 |
| TAIR|locus:2151734 ARLA1A "ADP-ribosylation factor-like A1A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 167/183 (91%), Positives = 179/183 (97%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MG DS+LNWLRSLFFKQEMELSL+GLQNAGKTSLVN IATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WDLGGQRRFRTMWERYCRGVSAI+YV+DAADRDSVPI+RSEL++LL KPSL+
Sbjct: 61 KGNVTIKIWDLGGQRRFRTMWERYCRGVSAIVYVIDAADRDSVPISRSELNDLLTKPSLN 120
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIPLL+LGNKIDKSEALSKQALVDQLGLES+TDREVCCYMISCKDSINIDAVIDWLIKHS
Sbjct: 121 GIPLLILGNKIDKSEALSKQALVDQLGLESVTDREVCCYMISCKDSINIDAVIDWLIKHS 180
Query: 181 KTA 183
+TA
Sbjct: 181 RTA 183
|
|
| TAIR|locus:2097355 ARLA1C "ADP-ribosylation factor-like A1C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
Identities = 147/182 (80%), Positives = 167/182 (91%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MG L++ LNWLRSLFFKQEMELSLIGLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLLEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIKLWDLGGQ RFR+MWERYCR VSAI+YVVDAAD D++ +++SELH+LL K SL+
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLN 120
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIPLLVLGNKIDK ALSK+AL D++GL S+TDREVCC+MISCK+S NID VIDWL+KHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKEALTDEMGLTSLTDREVCCFMISCKNSTNIDQVIDWLVKHS 180
Query: 181 KT 182
K+
Sbjct: 181 KS 182
|
|
| TAIR|locus:2158591 ARLA1D "ADP-ribosylation factor-like A1D" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 146/183 (79%), Positives = 169/183 (92%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MG D++LNWLRSLFFKQEMELSLIGLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWDALLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KG+VTIKLWDLGGQ RFR+MWERYCR VSAI+YVVDAAD D++ +++SELH+LL K SL+
Sbjct: 61 KGSVTIKLWDLGGQPRFRSMWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLN 120
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIPLLVLGNKIDK ALSK+AL D++GL+S+TDREVCC+MISCK+S NID VIDWL+KHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKEALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHS 180
Query: 181 KTA 183
K++
Sbjct: 181 KSS 183
|
|
| UNIPROTKB|F2Z4I5 ARL8B "ADP-ribosylation factor-like protein 8B" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 114/184 (61%), Positives = 151/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
|
| UNIPROTKB|E2RE13 ARL8B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 114/184 (61%), Positives = 151/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
|
| UNIPROTKB|Q9NVJ2 ARL8B "ADP-ribosylation factor-like protein 8B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 114/184 (61%), Positives = 151/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
|
| MGI|MGI:1914416 Arl8b "ADP-ribosylation factor-like 8B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 114/184 (61%), Positives = 151/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
|
| RGD|1562830 Arl8b "ADP-ribosylation factor-like 8B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 114/184 (61%), Positives = 151/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
|
|
| ZFIN|ZDB-GENE-030131-9370 arl8ba "ADP-ribosylation factor-like 8Ba" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 115/184 (62%), Positives = 152/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ ++ +L+W +SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALINRLLDWFKSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+Y+VDAADR+ V +R+ELH LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
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| UNIPROTKB|Q2KI07 ARL8B "ADP-ribosylation factor-like protein 8B" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 113/184 (61%), Positives = 151/184 (82%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
+ + +L+W RSLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
KGNVTIK+WD+GGQ RF++MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
GIP+LVLGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KTAK 184
K+ +
Sbjct: 182 KSRR 185
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9VHV5 | ARL8_DROME | No assigned EC number | 0.6153 | 0.9891 | 0.9784 | yes | no |
| Q5R6E7 | ARL8B_PONAB | No assigned EC number | 0.6141 | 1.0 | 0.9892 | yes | no |
| Q9NVJ2 | ARL8B_HUMAN | No assigned EC number | 0.6195 | 1.0 | 0.9892 | yes | no |
| Q4R4S4 | ARL8B_MACFA | No assigned EC number | 0.6086 | 1.0 | 0.9892 | N/A | no |
| Q9CQW2 | ARL8B_MOUSE | No assigned EC number | 0.6195 | 1.0 | 0.9892 | yes | no |
| Q54R04 | ARL8_DICDI | No assigned EC number | 0.5923 | 1.0 | 0.9945 | yes | no |
| Q66HA6 | ARL8B_RAT | No assigned EC number | 0.6195 | 1.0 | 0.9892 | yes | no |
| Q2KI07 | ARL8B_BOVIN | No assigned EC number | 0.6141 | 1.0 | 0.9892 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.II.442.1 | hypothetical protein (184 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 184 | |||
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 1e-101 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 6e-58 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 8e-46 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 3e-39 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 1e-37 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 2e-35 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 8e-35 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 1e-34 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 7e-34 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 2e-33 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 1e-32 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 1e-31 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 3e-31 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 6e-31 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 2e-30 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 3e-30 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 7e-28 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 1e-27 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 2e-25 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 3e-24 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 1e-22 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 4e-22 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 6e-22 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 1e-21 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 8e-21 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 2e-20 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 2e-16 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 2e-15 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 1e-14 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 8e-14 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 3e-13 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 4e-13 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 7e-13 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 1e-12 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 4e-12 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 5e-12 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 1e-11 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 2e-11 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 3e-11 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 8e-11 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 1e-10 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 1e-10 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 3e-10 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 4e-10 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 6e-10 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 7e-09 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 1e-08 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 1e-08 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 2e-08 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 2e-08 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 4e-08 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 4e-08 | |
| cd00880 | 161 | cd00880, Era_like, E | 5e-08 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 1e-07 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 2e-07 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 3e-07 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 8e-07 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 8e-07 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 1e-06 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 1e-06 | |
| cd04163 | 168 | cd04163, Era, E | 3e-06 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 4e-06 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 4e-06 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 5e-06 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 1e-05 | |
| cd04121 | 189 | cd04121, Rab40, Rab GTPase family 40 (Rab40) conta | 2e-05 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 2e-05 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 2e-05 | |
| cd01878 | 204 | cd01878, HflX, HflX GTPase family | 2e-05 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 2e-05 | |
| cd04140 | 165 | cd04140, ARHI_like, A Ras homolog member I (ARHI) | 2e-05 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 3e-05 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 4e-05 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 4e-05 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 5e-05 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 5e-05 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 9e-05 | |
| PRK11058 | 426 | PRK11058, PRK11058, GTPase HflX; Provisional | 1e-04 | |
| pfam04670 | 230 | pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve | 1e-04 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 2e-04 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 2e-04 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 2e-04 | |
| cd04145 | 164 | cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | 4e-04 | |
| smart00173 | 164 | smart00173, RAS, Ras subfamily of RAS small GTPase | 4e-04 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 4e-04 | |
| TIGR03156 | 351 | TIGR03156, GTP_HflX, GTP-binding protein HflX | 5e-04 | |
| cd04103 | 158 | cd04103, Centaurin_gamma, Centaurin gamma (CENTG) | 7e-04 | |
| smart00010 | 166 | smart00010, small_GTPase, Small GTPase of the Ras | 7e-04 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 8e-04 | |
| cd04118 | 193 | cd04118, Rab24, Rab GTPase family 24 (Rab24) | 8e-04 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 9e-04 | |
| cd04143 | 247 | cd04143, Rhes_like, Ras homolog enriched in striat | 0.001 | |
| COG2262 | 411 | COG2262, HflX, GTPases [General function predictio | 0.001 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 0.001 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 0.002 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 0.002 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 0.002 | |
| cd09915 | 175 | cd09915, Rag, Rag GTPase subfamily of Ras-related | 0.002 | |
| PTZ00369 | 189 | PTZ00369, PTZ00369, Ras-like protein; Provisional | 0.002 | |
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 0.003 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 0.004 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 0.004 | |
| cd04130 | 173 | cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W | 0.004 | |
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 0.004 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 287 bits (736), Expect = e-101
Identities = 114/159 (71%), Positives = 137/159 (86%)
Query: 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80
E++L+GLQN+GKT+LVN IA+G +SED IPTVGFNMRKVTKGNVTIK+WDLGGQ RFR+M
Sbjct: 1 EITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSM 60
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140
WERYCRGV+AI+YVVDAADR+ + +A++ELH+LL KPSL GIPLLVLGNK D ALS
Sbjct: 61 WERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD 120
Query: 141 ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
L++Q+ L+SITDREV CY IS K+ NID V+DWLIKH
Sbjct: 121 ELIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWLIKH 159
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 6e-58
Identities = 60/156 (38%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER 83
++GL AGKT+++ + G IPT+GFN+ V NV +WD+GGQ + R +W+
Sbjct: 4 MLGLDGAGKTTILYKLK-LGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLWKH 62
Query: 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV 143
Y +++VVD++DR+ + A++ELH+LL + L G PLL+L NK D AL++ L+
Sbjct: 63 YYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESELI 122
Query: 144 DQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
+ LGLESI R S +D +DWLI+
Sbjct: 123 ELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 8e-46
Identities = 65/169 (38%), Positives = 95/169 (56%), Gaps = 2/169 (1%)
Query: 11 LRSLF-FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW 69
L LF + +EM + ++GL NAGKT+++ + G IPT+GFN+ VT NV +W
Sbjct: 5 LAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVT-TIPTIGFNVETVTYKNVKFTVW 63
Query: 70 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129
D+GGQ R +W Y A+++VVD+ADRD + A+ ELH LL + L+ PLL+L N
Sbjct: 64 DVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILAN 123
Query: 130 KIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
K D A+S+ + + LGL + DR S +D +DWL
Sbjct: 124 KQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSN 172
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 3e-39
Identities = 53/154 (34%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 7 ILNWLRSLF-----FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK 61
I +W ++ +K+E ++ +GL NAGKT+L++ + ++ +PT+ ++T
Sbjct: 2 IFDWFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSEELTI 60
Query: 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG 121
GNV +DLGG + R +W+ Y V I+++VDAAD + ++ EL LL L+
Sbjct: 61 GNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELAN 120
Query: 122 IPLLVLGNKIDKSEALSKQALVDQLGLESITDRE 155
+P+L+LGNKIDK A+S++ L + LGL T +
Sbjct: 121 VPILILGNKIDKPGAVSEEELREALGLYGTTTGK 154
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 1e-37
Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 9/177 (5%)
Query: 7 ILNWLRSL--FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDM---IPTVGFNMRKVTK 61
+L+ LR L +QE+ + L+GL NAGKT+++ +A SED+ PT GFN++ V
Sbjct: 1 LLSILRKLKPSSRQEVRILLLGLDNAGKTTILKQLA----SEDISHITPTQGFNIKNVQA 56
Query: 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG 121
+ +WD+GGQR+ R W Y ++YV+D+ADR A EL ELL + L+G
Sbjct: 57 DGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAG 116
Query: 122 IPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+P+LV NK D A + + + L L I DR S K + ++W+ K
Sbjct: 117 VPVLVFANKQDLLTAAPAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWVCK 173
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-35
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER 83
++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGGQ R W
Sbjct: 4 ILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRC 62
Query: 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV 143
Y AI+YVVD+ DRD + I++SELH +L + L LLV NK D ALS+ +
Sbjct: 63 YYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAEVA 122
Query: 144 DQLGLESITDREVCCYMISCKDSINIDAVIDWLI 177
++LGL + DR + S +D +DWL+
Sbjct: 123 EKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLV 156
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 8e-35
Identities = 58/144 (40%), Positives = 84/144 (58%), Gaps = 1/144 (0%)
Query: 11 LRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
L LF +EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD
Sbjct: 1 LSKLFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWD 59
Query: 71 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 130
+GGQ + R +W Y G +++VVD+ADRD + AR ELH ++ + LLV NK
Sbjct: 60 VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANK 119
Query: 131 IDKSEALSKQALVDQLGLESITDR 154
D +A+ + ++LGL I DR
Sbjct: 120 QDLPDAMKPHEIQEKLGLTRIRDR 143
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-34
Identities = 53/156 (33%), Positives = 92/156 (58%), Gaps = 3/156 (1%)
Query: 25 IGLQNAGKTSLVNTIATGGY-SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER 83
+GL N+GKT+++N + S++++PTVGFN+ KGN++ +D+ GQ ++R +WE
Sbjct: 5 LGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGLWEH 64
Query: 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS--GIPLLVLGNKIDKSEALSKQA 141
Y + + I++V+D++DR + +A+ EL LL P + IP+L NK+D +AL+
Sbjct: 65 YYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALTAVK 124
Query: 142 LVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 177
+ L LE+I D+ + S +D +DWL
Sbjct: 125 ITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQ 160
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 7e-34
Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKL 68
LF +EM + ++GL AGKT+++ + G S IPT+GFN+ VT N++ +
Sbjct: 3 KLFSKLFGNKEMRILMVGLDAAGKTTILYKLKLG-ESVTTIPTIGFNVETVTYKNISFTV 61
Query: 69 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 128
WD+GGQ + R +W Y +++VVD+ DRD + AR ELH +L + L +LV
Sbjct: 62 WDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFA 121
Query: 129 NKIDKSEALSKQALVDQLGLESITDR 154
NK D +A+ + ++LGL SI DR
Sbjct: 122 NKQDLPDAMKAAEITEKLGLHSIRDR 147
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-33
Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 6/158 (3%)
Query: 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80
++ ++GL AGKTSL++++++ E ++PT GFN + + ++L ++GG + R
Sbjct: 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKY 60
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140
W+RY G +++VVD+AD + +P+AR ELH+LL P +PL+VL NK D A S Q
Sbjct: 61 WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQ 118
Query: 141 ALVDQLGLESIT-DREV---CCYMISCKDSINIDAVID 174
+ +L LE I R + ++AV D
Sbjct: 119 EIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD 156
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-32
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%)
Query: 24 LIGLQNAGKTSLVNTIAT------GGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQRR 76
++GL NAGKT+ + T G + I PTVG N+ + G + WDLGGQ
Sbjct: 4 ILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQEE 63
Query: 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136
R++W++Y ++YV+D+ DR+ ++S +++ +L G+PLLVL NK D +A
Sbjct: 64 LRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLPDA 123
Query: 137 LSKQAL--VDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
LS + V + I R+ +S + ++ I+WL+
Sbjct: 124 LSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLVD 167
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 1e-31
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 6/153 (3%)
Query: 11 LRSLFFKQ-EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW 69
L SLFF + E ++ ++GL NAGKT+++ G PT+G N+ ++ N+ +W
Sbjct: 6 LWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTS-PTIGSNVEEIVYKNIRFLMW 64
Query: 70 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129
D+GGQ R+ W Y A++ V+D+ DR+ +P+ + EL+++L L LLVL N
Sbjct: 65 DIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLAN 124
Query: 130 KIDKSEALSKQALVDQLGLESITDRE----VCC 158
K D A++ + + LGL SI D CC
Sbjct: 125 KQDLKGAMTPAEISESLGLTSIRDHTWHIQGCC 157
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 3e-31
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 1/160 (0%)
Query: 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78
EM + ++GL NAGKT+++ G + PT+GFN++ + + +WD+GGQ+ R
Sbjct: 14 EMRILMLGLDNAGKTTILKKF-NGEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSLR 72
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138
+ W Y A+++VVD++DR + + EL +LL++ L+G LL+ NK D ALS
Sbjct: 73 SYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGALS 132
Query: 139 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ + + L L+SI + S N+ IDWL+
Sbjct: 133 PEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLVD 172
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-31
Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MG + L LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V
Sbjct: 1 MGLSFTKL--FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE 57
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
N++ +WD+GGQ + R +W Y + +++VVD+ DRD V AR ELH +L + L
Sbjct: 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDRE 155
LLV NK D A++ + D+LGL S+ R
Sbjct: 118 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152
|
Length = 181 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-30
Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 5/151 (3%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL 71
+SLF K+E+ + ++GL AGKT+++ + G IPT+GFN+ V N+ +WD+
Sbjct: 10 KSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDV 68
Query: 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
GGQ + R +W Y + + +++VVD+ DR+ + AR EL +L + L LLV NK
Sbjct: 69 GGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQ 128
Query: 132 DKSEALSKQALVDQLGLESITDR----EVCC 158
D A+S + ++LGL S+ R + CC
Sbjct: 129 DLPNAMSTTEVTEKLGLHSVRQRNWYIQGCC 159
|
Length = 182 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-30
Identities = 49/135 (36%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 79
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+W Y + +++VVD+ DR+ + AR EL +L + L LLV NK D A+S
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA 119
Query: 140 QALVDQLGLESITDR 154
+ D+LGL S+ +R
Sbjct: 120 AEVTDKLGLHSLRNR 134
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 7e-28
Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW 81
L +GL NAGKT+LV+ + G + + PTVGF K+ + ++DLGG FR +W
Sbjct: 2 LLTVGLDNAGKTTLVSALQ-GEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIW 60
Query: 82 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA 141
Y +++VVD++D D V + L ELL P +SG P+LVL NK DK AL
Sbjct: 61 VNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGAD 120
Query: 142 LVDQLGLESITDREVC-CYMISCKDSINIDAVID 174
+++ L LE + + C++ C + ID
Sbjct: 121 VIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKID 154
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-27
Identities = 41/133 (30%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKV-TKGNVTIKLWDLGGQRRFRTM 80
L+GL +AGK++L+ + ++E + IPTVGFN+ + + ++++ +WD+GGQ + RT+
Sbjct: 4 LLGLDSAGKSTLLYKLK---HAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140
W+ Y ++YVVD++D + ++ EL +L + G+P+++L NK D AL+ +
Sbjct: 61 WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120
Query: 141 ALVDQLGLESITD 153
+ + L+
Sbjct: 121 EITRRFKLKKYCS 133
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 2e-25
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 11/177 (6%)
Query: 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN---VTIKLWDLG 72
Q + + ++GL +AGKT+++ + + +PT GFN K V+ GN VT WD+G
Sbjct: 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNAKGVTFHFWDVG 60
Query: 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 132
GQ + R +W+ Y R I++VVD+ D + + A++ELH++ G+P+LVL NK D
Sbjct: 61 GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQD 120
Query: 133 KSEALSKQALVDQLGLESITDR-----EVCCYMISCKDSINIDAVIDWLIKHSKTAK 184
AL + L L ++ + C +I ++ + + ++K K +
Sbjct: 121 LPNALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMILKRRKMLR 177
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 3e-24
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 15/165 (9%)
Query: 24 LIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVT--KGNVTIKLWDLGGQRRFR 78
++G GK+SL+N + G S+ T ++ KG V + L D G F
Sbjct: 2 VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFG 61
Query: 79 TMWE-----RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 133
+ RG IL VVD+ DR+S A+ + L K GIP++++GNKID
Sbjct: 62 GLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNKIDL 118
Query: 134 SEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
E + L+ L I V + +S K +D + + LI+
Sbjct: 119 LEEREVEELLRLEELAKILG--VPVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 1e-22
Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 8 LNWLRSLF-----FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG 62
+W + + + ++ +GL NAGKT+L++ + ++ PT ++ G
Sbjct: 1 FDWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSEELAIG 59
Query: 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI 122
N+ +DLGG ++ R +W+ Y V+ I+Y+VDA D++ ++ EL LL L+ +
Sbjct: 60 NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATV 119
Query: 123 PLLVLGNKIDKSEALSKQALVDQLGLESIT 152
P L+LGNKID A S+ L LGL + T
Sbjct: 120 PFLILGNKIDAPYAASEDELRYALGLTNTT 149
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 4e-22
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWD 70
F +E ++ ++G GKT+L+N + + E PT+G T + N+ ++LWD
Sbjct: 1 LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60
Query: 71 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 130
GQ +R++ Y RG + IL V D+ R+S E E L + + +P+L++GNK
Sbjct: 61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120
Query: 131 ID-KSEALSKQALVDQLGLESITDRE 155
ID E S + +++QL E +
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVL 146
|
Length = 219 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 87.0 bits (215), Expect = 6e-22
Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 12/161 (7%)
Query: 25 IGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERY 84
+GL AGKT+++ + + + IPT+GFN+ V N+ +WD+GG+ + R +W+ Y
Sbjct: 5 LGLDGAGKTTILFKLKQDEFMQP-IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHY 63
Query: 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVD 144
A+++V+D++ RD V A SEL +LL + L LL+ NK D + ALS + + +
Sbjct: 64 YLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTE 123
Query: 145 QLGLESITDREVCC----YMISC--KDSINIDAVIDWLIKH 179
L L ++CC Y+ C + + + +DWL +
Sbjct: 124 LLSLH-----KLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 1e-21
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
LIG GKTSL+ +SE+ T+G F + + +KL WD GQ RFR+
Sbjct: 5 LIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQERFRS 64
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y RG + V D +R+S L+EL + IP++++GNK D L
Sbjct: 65 ITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEY-APPNIPIILVGNKSD----LED 119
Query: 140 QALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 178
+ V + + S K N+D + L +
Sbjct: 120 ERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 8e-21
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRF 77
+ LIG GK+SL++ G +SE T+G F + + +KL WD GQ RF
Sbjct: 3 IILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF 62
Query: 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137
R++ Y RG L V D +R+S + L EL + + ++++GNK D L
Sbjct: 63 RSITSSYYRGAVGALLVYDITNRESFENLENWLKELREY-ASPNVVIMLVGNKSD----L 117
Query: 138 SKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIKH 179
+Q V + E+ + + S K + N++ + L +
Sbjct: 118 EEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-20
Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 32/171 (18%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
L+G GK+SL+ + E+ IPT+G F + + T+KL WD GQ RFR
Sbjct: 4 LVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRA 63
Query: 80 MWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKID---- 132
+ Y RG L V D RDS V E+ +P++++GNK D
Sbjct: 64 LRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILR--HAD--ENVPIVLVGNKCDLEDQ 119
Query: 133 ----KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 178
E +AL +LG +M S K + N++ + L +
Sbjct: 120 RVVSTEEG---EALAKELG---------LPFMETSAKTNENVEEAFEELAR 158
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-16
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
LIG GK+SL+ + ED+ T+G F ++ VT +KL WD GQ RFRT
Sbjct: 5 LIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQERFRT 64
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
+ Y RG ++ V D RD+ + L+EL + +++GNKIDK
Sbjct: 65 LTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-15
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 28/168 (16%)
Query: 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WD 70
FK L LIG GK+ L+ A Y+E I T+G F +R + T+KL WD
Sbjct: 2 LFK----LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWD 57
Query: 71 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 130
GQ RFRT+ Y RG I+ V D D++S + L E + + + + L++GNK
Sbjct: 58 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNK 116
Query: 131 --------IDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 170
+D +EA + D+LG+ + S K++ N++
Sbjct: 117 CDLTDKKVVDYTEA---KEFADELGIPFLE--------TSAKNATNVE 153
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-14
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 75
+L LIG GK+ L+ + ++ I T+G F +R + IKL WD GQ
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63
Query: 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
RFRT+ Y RG I+ V D D S ++ + + S + +++GNK D E
Sbjct: 64 RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHAS-EDVERMLVGNKCDMEE 122
Query: 136 --ALSK---QALVDQLGLESITDREVCCYMISCKDSINIDA 171
+SK +AL + G++ + S K +IN++
Sbjct: 123 KRVVSKEEGEALAREYGIKFLE--------TSAKANINVEE 155
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 8e-14
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 22/168 (13%)
Query: 19 EMELSLIGLQNAGKTSLVNTIATGGYSED-MIPTVGFN--MRKVTKGNVTIK--LWDLGG 73
E+++ ++G N GK++L+N + S P N + + T K L D G
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 74 QRRFRTMWERYCRGVSAILYVVDAA----DRDSVPIARSELHELLMKPSLSGIPLLVLGN 129
Q + + Y R V + L V D D + + +++ + SG+P++++GN
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE---SGVPIILVGN 117
Query: 130 KIDKSEALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAVID 174
KID +A K L +L E I +S + NID+
Sbjct: 118 KIDLRDAKLKTHVAFLFAKLNGEPII-------PLSAETGKNIDSAFK 158
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-13
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRF 77
L L+G + GK+S+V +SE+ T+G F + V + T+K WD GQ R+
Sbjct: 4 LVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY 63
Query: 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 132
R++ Y RG +A + V D +S A+S + EL + + L GNK D
Sbjct: 64 RSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALA-GNKAD 117
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-13
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80
L+G ++GKT+L + TG + P V +KG + L D+ G + R
Sbjct: 5 LLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKK-LTLVDVPGHEKLRDK 63
Query: 81 -WERYCRGVSAILYVVDAAD--RDSVPIARSELHELLMKPSLS--GIPLLVLGNKIDKSE 135
E + AI++VVD+A ++ +A L+++L IP+L+ NK D
Sbjct: 64 LLEYLKASLKAIVFVVDSATFQKNIRDVA-EFLYDILTDLEKIKNKIPILIACNKQDLFT 122
Query: 136 ALSKQALVDQLGLE 149
A + + + L E
Sbjct: 123 AKPAKKIKELLEKE 136
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 7e-13
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
LIG N GKT +V +G +SE T+G F M+ + +KL WD GQ RFRT
Sbjct: 8 LIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRT 67
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ + Y R + + D R S + E + K S + LL++GNK D E +
Sbjct: 68 ITQSYYRSANGAIIAYDITRRSSFESVPHWIEE-VEKYGASNVVLLLIGNKCDLEE--QR 124
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAV 172
+ L ++ + + S K+S N++
Sbjct: 125 EVLFEEACTLAEHYGILAVLETSAKESSNVEEA 157
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-12
Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 14/163 (8%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVT--KGNVTIKLWDLGGQRRFRT 79
L+G GKTSLV ++E T F + V + + +WD GQ R+
Sbjct: 5 LLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA 64
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG--IPLLVLGNKIDKSEAL 137
+ Y R + V D D DS + + EL + G I L+++GNKID L
Sbjct: 65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKEL---KQMRGNNISLVIVGNKID----L 117
Query: 138 SKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIKH 179
+Q +V + E + S K I+ + L K
Sbjct: 118 ERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-12
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTI--KLWDLGGQR 75
+++ L+G GKTSL+ G + E+ I T+G N + ++ I +WDLGGQR
Sbjct: 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60
Query: 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 132
F M C+ AIL++ D + ++ + E + + + IP+LV G K D
Sbjct: 61 EFINMLPLVCKDAVAILFMFDLTRKSTLNSIK-EWYRQARGFNKTAIPILV-GTKYD 115
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 5e-12
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 20/167 (11%)
Query: 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRR 76
+L +IG + GKTS + A ++ + TVG F ++ V + + IKL WD GQ R
Sbjct: 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62
Query: 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKP-SLSGIPLLVLGNKIDKSE 135
+RT+ Y RG + + D + +S + ++ K S ++++GNK D +
Sbjct: 63 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI--KTYSWDNAQVILVGNKCDMED 120
Query: 136 -----ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 177
A + L DQLG E + S K++IN+ V + L+
Sbjct: 121 ERVVSAERGRQLADQLGFEF--------FEASAKENINVKQVFERLV 159
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-11
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
LIG GKT LV G + T+G F ++ V IKL WD GQ RFR+
Sbjct: 12 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS 71
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ + Y R +A++ D +S L E+ + I +LV GNKID +E +
Sbjct: 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILV-GNKIDLAE---R 127
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINID 170
+ + Q E +++ S K+S N++
Sbjct: 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVE 158
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-11
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFR- 78
+IG N GKT L G + E T+G + R+ T + ++LWD GQ RFR
Sbjct: 7 VIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK 66
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 132
+M + Y R V A+++V D + S S + E + +P +++GNK D
Sbjct: 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCD 120
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-11
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNTIA------------TGGYSEDMIPTVGFNMRKVT-KGNVT 65
E ++ +IG AGKT+ V ++ + TV + + +
Sbjct: 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTG 69
Query: 66 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL 125
+ L+ GQ RF+ MWE RG + +VD+ S PI + S + IP++
Sbjct: 70 VHLFGTPGQERFKFMWEILSRGAVGAIVLVDS----SRPITFHAEEIIDFLTSRNPIPVV 125
Query: 126 VLGNKIDKSEALSKQALVDQLGLESIT 152
V NK D +AL + + + L LE ++
Sbjct: 126 VAINKQDLFDALPPEKIREALKLELLS 152
|
Length = 187 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 8e-11
Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 16/168 (9%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG---FNMRKVTKGN-VTIK 67
+S K + L+G GK+SL+N T + + T+G N G+ VT++
Sbjct: 2 KSSLLK----VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQ 57
Query: 68 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPL 124
+WD GQ RFR++ + RG L D S + + E P
Sbjct: 58 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 117
Query: 125 LVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDA 171
++LGNKID E +Q ++ D Y S KD+ N+ A
Sbjct: 118 VILGNKIDIPE---RQVSTEEAQ-AWCRDNGDYPYFETSAKDATNVAA 161
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-10
Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKV----TKGNVTIKLWDLGG 73
+++ ++G N GK+S++ G +++D T+G F +++ + +V + LWD G
Sbjct: 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60
Query: 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 133
Q F + + Y RG A + V DR+S E + ++ IP++++ KID
Sbjct: 61 QEEFDAITKAYYRGAQACILVFSTTDRES--FEAIESWKEKVEAECGDIPMVLVQTKID- 117
Query: 134 SEALSKQALVDQLGLESITDR-EVCCYMISCKDSINIDAVIDWL 176
L QA++ E++ R ++ + S KD N+ + ++L
Sbjct: 118 ---LLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-10
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
+IG GK+ L++ + +D T+G F R V G ++KL WD GQ RFR+
Sbjct: 5 IIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQERFRS 64
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
+ Y RG + L V D R+S + L + S I ++++GNK D +
Sbjct: 65 VTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLAS-PDIVIILVGNKKDLED 119
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-10
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRR 76
+L +IG GK+SL+ A +S I T+G F +R V +KL WD GQ R
Sbjct: 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67
Query: 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
FRT+ Y RG ++ V D + +S + L E+ + + + +++GNK D E
Sbjct: 68 FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEI--EQNCDDVCKVLVGNKNDDPE 124
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-10
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 27/173 (15%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVT---KGNVTIKLWDLGGQRRFR 78
+IG GKTS++ G +S+ T+G F ++ + V ++LWD+ GQ RF
Sbjct: 5 VIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG 64
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMK-----------PSLSGIPLLVL 127
M Y +G + V D + R E ++K P+ IP L+L
Sbjct: 65 GMTRVYYKGAVGAIIVFD--------VTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLL 116
Query: 128 GNKID-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
NK D K E L+K +Q+ + + + S K++INI+ + +L+K+
Sbjct: 117 ANKCDLKKERLAKDP--EQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKN 167
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 6e-10
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
LIG GK+SL+ + + ED+ PT+G F ++++T G +KL WD GQ RFRT
Sbjct: 19 LIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT 77
Query: 80 MWERYCRGVSAILYVVDAADRDS 102
+ Y R I+ V D R++
Sbjct: 78 LTSSYYRNAQGIILVYDVTRRET 100
|
Length = 211 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 7e-09
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK--GNVTIKL--WDLGGQRRF 77
+ +IG + +GK+SL++ + G + + + G + T T L WD GG+
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREEL 61
Query: 78 RTMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKI 131
+ + + AIL V D DR+S V + L ++ IP++++GNK+
Sbjct: 62 KFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPN--LRKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-08
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 31 GKTSLVNTIATGGYSEDMIPTVG--FNMRKVT---KGNVTIKLWDLGGQRRFRTMWERYC 85
GKTSL+ A G+ + T+G F R++T NVT+++WD+GGQ+ M ++Y
Sbjct: 12 GKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQQIGGKMLDKYI 71
Query: 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI--PLLVL-GNKID 132
G A+ V D + S + ++ K + P +VL GNK D
Sbjct: 72 YGAQAVCLVYDITNSQSFENL-EDWLSVVKKVNEESETKPKMVLVGNKTD 120
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-08
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQRRFRT 79
LIG GK++L++ ++ D T+G F R + TIK +WD GQ R+R
Sbjct: 8 LIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQERYRA 67
Query: 80 MWERYCRGVSAILYVVDAADRDS-VPIAR--SELHELLMKPSLSGIPLLVLGNKID 132
+ Y RG L V D + + + R EL + + S I ++++GNK D
Sbjct: 68 ITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDH----ADSNIVIMLVGNKSD 119
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-08
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 25 IGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNV--TIKLWDLGGQRRFRTM 80
+G + GKT L+N + ++ T+G F M + V +++LWD GQ RF+ +
Sbjct: 6 VGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCI 65
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134
Y RG AI+ V D D S+ R L + L + S + L ++G K D S
Sbjct: 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-08
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKV-TKGNVTIKL--WDLGGQRR 76
L +IG GK+SL+ G ++E PTVG F R + + V IKL WD GQ R
Sbjct: 5 LIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER 64
Query: 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 132
FR++ Y R +L V D +R+S L E +++G+K D
Sbjct: 65 FRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-08
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRF 77
L +G Q+ GKTS++ + T+G F + + + T++L WD GQ RF
Sbjct: 3 LVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQERF 62
Query: 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
R++ Y R S + V D +R S + ++ + I +LV GNK D S+
Sbjct: 63 RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLV-GNKTDLSD 119
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-08
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGY-SEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFR 78
L+G GKT L+ G + + I TVG F + VT V +KL WD GQ RFR
Sbjct: 5 LVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQERFR 64
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134
++ Y R A+L + D ++ S R+ L E+L S + +++LGNK D S
Sbjct: 65 SVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQ-SDVVIMLLGNKADMS 119
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-08
Identities = 38/169 (22%), Positives = 60/169 (35%), Gaps = 23/169 (13%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-----GNVTIKLWDLGG----- 73
+ G N GK+SL+N + G + P G V K + L D G
Sbjct: 2 IFGRPNVGKSSLLNAL-LGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEG 60
Query: 74 ---QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 130
+ R + +L VVD +D E L G P+L++ NK
Sbjct: 61 GLGRERVEEARQVA-DRADLVLLVVD-SDLT-----PVEEEAKLGLLRERGKPVLLVLNK 113
Query: 131 IDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
ID ++ L+ + LE + D V +S ID + + +
Sbjct: 114 IDLVPESEEEELLRERKLELLPDLPVI--AVSALPGEGIDELRKKIAEL 160
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQRRFRT 79
++G GKTSL+N +S T+G F ++VT + VT+++WD GQ RF++
Sbjct: 5 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQERFQS 64
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG---IPLLVLGNKIDKSE 135
+ + RG + V D + S S E L++ S P +VLGNKID E
Sbjct: 65 LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEE 123
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-07
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRF 77
L L+G GKT+ V TG + + + T+G + + +G + +WD GQ +F
Sbjct: 3 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF 62
Query: 78 RTMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134
+ + Y + + D R + VP +L + IP+++ GNK+D
Sbjct: 63 GGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRV-----CENIPIVLCGNKVDIK 117
Query: 135 EALSKQ 140
+ K
Sbjct: 118 DRKVKP 123
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-07
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 14/167 (8%)
Query: 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN-----VTIKLWDLGG 73
E +L L+G GKTSL + + D T G N++ + + +WD GG
Sbjct: 1 EAKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGG 60
Query: 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 133
Q + + + S L V D D V L ++ +S P++++G ID+
Sbjct: 61 QEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVS--PVILVGTHIDE 118
Query: 134 SEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
S K+AL + +I + +SCK+ I + + K
Sbjct: 119 SCDEDILKKALNKK--FPAIINDIH---FVSCKNGKGIAELKKAIAK 160
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 8e-07
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKLWDLGGQRRFRTMW 81
L+G N GKTSL++ + +D + TVG F +++ N++I WD G+ +F +
Sbjct: 5 LLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAFYLKQWGPYNISI--WDTAGREQFHGLG 61
Query: 82 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140
YCRG +A++ D ++ S+ L + + V+GNK+D +E +
Sbjct: 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALA 119
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 8e-07
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 30/163 (18%)
Query: 31 GKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN-VTIKLWDLGGQRRFRTMWERYCRG 87
GK++L +G + E+ PT+ + + V G T+ + D GQ F M ++Y R
Sbjct: 11 GKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEFSAMRDQYIRN 70
Query: 88 VSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKID--------KSEA 136
+ V R+S + R ++ + K +P++++GNK D E
Sbjct: 71 GDGFILVYSITSRESFEEIKNIREQILRVKDKED---VPIVLVGNKCDLENERQVSTEEG 127
Query: 137 LSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 178
+AL ++ G C ++ S K +INID + + L++
Sbjct: 128 ---EALAEEWG---------CPFLETSAKTNINIDELFNTLVR 158
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-06
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGN-VTIKLWDLGGQRRFRT 79
L+G GK+ LV GY + T + K +G + + WD GQ RF+T
Sbjct: 5 LLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT 64
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 132
M Y A + V D + + E ++ IP +V+ NKID
Sbjct: 65 MHASYYHKAHACILVFDVTRKITYKNLSKWYEE--LREYRPEIPCIVVANKID 115
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-06
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT---KGN-VTIKLWDLGGQR 75
+++ +IG + GKTSL+ + E TVG + + T +G + +++WD GQ
Sbjct: 1 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60
Query: 76 RFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKID 132
RF ++ Y R I+ V D + D +P + +++ K + LL++GNK+D
Sbjct: 61 RFNSITSAYYRSAKGIILVYDITKKETFDDLP----KWMKMIDKYASEDAELLLVGNKLD 116
Query: 133 KSEALSKQALVDQLG---LESITDREVCCYMISCKDSINIDAV 172
+ + + Q G + IT C S KD+ N+D +
Sbjct: 117 CE---TDREITRQQGEKFAQQITGMRFC--EASAKDNFNVDEI 154
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-06
Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 48/191 (25%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNTI------------------ATGGYSEDM----- 48
+S F +++IG N GK++L+N + G Y++D
Sbjct: 2 KSGF------VAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIF 55
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS 108
+ T G + K G R + W + V +L+VVDA++
Sbjct: 56 VDTPGIHKPKKKLGE-----------RMVKAAWSAL-KDVDLVLFVVDASEWIG-----E 98
Query: 109 ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168
+L S P++++ NKID + + + E E+ + IS N
Sbjct: 99 GDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELHPFAEI--FPISALKGEN 156
Query: 169 IDAVIDWLIKH 179
+D ++++++++
Sbjct: 157 VDELLEYIVEY 167
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-06
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLWDLGGQRRF 77
L LIG GKT L+ + I T+G F M+ +V V I++WD GQ R+
Sbjct: 3 LLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY 62
Query: 78 RTMWERYCRGVSAILYVVD-AADRDSVPIAR--SELHELLMKPSLSGIPLLVLGNKIDKS 134
+T+ ++Y R I V D +++R I + S++ E + G+ +++GNK D+
Sbjct: 63 QTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY----APEGVQKILIGNKADEE 118
Query: 135 EA 136
+
Sbjct: 119 QK 120
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-06
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 46 EDMIPTVGFNMRKVTKGNVTIKL--WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV 103
D+ V F R +T IKL WD GQ FR++ Y RG + L V D R++
Sbjct: 33 HDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 92
Query: 104 PIARSELHELLMKPSLSGIPLLVLGNKID 132
S L + + S S + ++++GNK D
Sbjct: 93 NHLTSWLED-ARQHSNSNMTIMLIGNKCD 120
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 5e-06
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
+IG GK+ L++ + D T+G F R + IKL WD GQ RFR
Sbjct: 7 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRA 66
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHEL--LMKPSLSGIPLLVLGNKID 132
+ Y RG + L V D R + S L + L P+ + ++GNK D
Sbjct: 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV---IFLIGNKAD 118
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 23/170 (13%)
Query: 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQ 74
E +L L+G GKT+ V TG + + IPT+G + G + +WD GQ
Sbjct: 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68
Query: 75 RRFRTMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKI 131
+F + + Y + + D R + VP ++ + IP++++GNK+
Sbjct: 69 EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV-----CENIPIVLVGNKV 123
Query: 132 DKSEALSKQALVDQLGLESIT---DREVCCYMISCKDSINIDAVIDWLIK 178
D + K IT + + Y IS K + N + WL +
Sbjct: 124 DVKDRQVKAR--------QITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
|
Length = 215 |
| >gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 2e-05
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRT 79
L+G + GK ++ ++ G +G + + T V ++LWD GQ RF T
Sbjct: 11 LVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT 70
Query: 80 MWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKID---K 133
++ Y RG I+ V D +R D + E+ E G+P +++GN++ K
Sbjct: 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE-----HAPGVPKILVGNRLHLAFK 125
Query: 134 SEALSKQA 141
+ ++QA
Sbjct: 126 RQVATEQA 133
|
The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 2e-05
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGNVTIKL--WDLGGQRRFRT 79
+IG GK+ L+ + D+ V F R +T N IKL WD GQ FR+
Sbjct: 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS--EAL 137
+ Y RG + L V D R++ S L + + + + ++++GNK D + A+
Sbjct: 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAV 129
Query: 138 SKQ 140
S +
Sbjct: 130 STE 132
|
Length = 210 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-05
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 15/138 (10%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80
+ GL ++GKTSL + TG + P+ + + KG L D G + R
Sbjct: 8 IAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKY-MLHKGFSF-TLIDFPGHVKLRQK 65
Query: 81 W---ERYCRGVSAILYVVD-AADRDSVPIARSELHELLMKPSLS--GIPLLVLGNKID-- 132
+ + I++VVD A V L+E+L L GI +L+ NK +
Sbjct: 66 LLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACNKQESF 125
Query: 133 --KSEALSKQALVDQLGL 148
+ KQAL ++
Sbjct: 126 TARPPKKIKQALEKEINT 143
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|206666 cd01878, HflX, HflX GTPase family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 2e-05
Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 58/187 (31%)
Query: 23 SLIGLQNAGKTSLVNTIATGG-YSEDMI-----PTVGFNMRKVTKGNVTIKLWDLGGQRR 76
+L+G NAGK++L N + +ED + PT R++ L G R
Sbjct: 45 ALVGYTNAGKSTLFNALTGADVLAEDQLFATLDPTT----RRI----------KLPGGRE 90
Query: 77 --------------------FR-TMWERYCRGVSAILYVVDAADRDSVPIARSEL---HE 112
FR T+ E +L+VVDA+D P ++ E
Sbjct: 91 VLLTDTVGFIRDLPHQLVEAFRSTLEE--VAEADLLLHVVDASD----PDREEQIETVEE 144
Query: 113 LLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172
+L + IP++++ NKID + + + +++ IS K +D +
Sbjct: 145 VLKELGADDIPIILVLNKIDLLDDEELEERLRAGRPDAV--------FISAKTGEGLDLL 196
Query: 173 IDWLIKH 179
+ + +
Sbjct: 197 KEAIEEL 203
|
HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPI--- 105
+ T G K + +L+D+GGQR R W V+AI++VV ++ D V
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212
Query: 106 ARSELHELLM-------KPSLSGIPLLVLGNKID 132
+ + L E L P P+++ NK D
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKD 246
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI) | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 2e-05
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV---TKGNVTIKLWDLGGQRRFRTM 80
+ G GK+SLV G + E IPT+ R+V +K T+++ D G +F M
Sbjct: 6 VFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQFPAM 65
Query: 81 WERY--CRGVSAILYVVDAADRDSVPIARSELHELLMK---PSLSGIPLLVLGNKIDKSE 135
+R +G + IL V + S+ + ++EL+ + +L IP++++GNK D+S
Sbjct: 66 -QRLSISKGHAFIL-VYSITSKQSLEELKP-IYELICEIKGNNLEKIPIMLVGNKCDESP 122
Query: 136 ALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIKHSK 181
+ V ++ C +M S K + N+ + L+ K
Sbjct: 123 SRE----VSSSEGAALARTWNCAFMETSAKTNHNVQELFQELLNLEK 165
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 3e-05
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)
Query: 25 IGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTM 80
+G GKT+ V TG + + + T+G + + +G + +WD GQ +F +
Sbjct: 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60
Query: 81 WE-RYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136
+ Y +G AI+ + D R +VP +L + IP+++ GNK+D +
Sbjct: 61 RDGYYIQGQCAII-MFDVTARVTYKNVPNWHRDLVRV-----CENIPIVLCGNKVDVKDR 114
Query: 137 LSKQALVDQLGLESIT---DREVCCYMISCKDSINIDAVIDWLIK 178
++ +SIT + + Y IS K + N + WL +
Sbjct: 115 --------KVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 151
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 4e-05
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
+G V ++LWD GQ RFR++ Y R +A + V D +R S + ++L +
Sbjct: 26 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD 85
Query: 121 GIPLLVLGNKID 132
I LV GNK D
Sbjct: 86 VIIALV-GNKTD 96
|
Length = 176 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-05
Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 41/177 (23%)
Query: 31 GKTSLVNTIATGGYSEDMIPTVGFN-MRKVTKGN---VTIKLWDLGGQRRFRTMWERYCR 86
GKT L+ A G + E+ +PTV N + + N + + LWD GQ E Y R
Sbjct: 15 GKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQ-------EDYDR 67
Query: 87 -------GVSAILYVVDAADRDSVPIARSELHELLMK--PSLS----GIPLLVLGNKIDK 133
V IL + S L + K P ++ G P++++G K D
Sbjct: 68 LRPLSYPDVDVILICYSVDNPTS-------LDNVEDKWYPEVNHFCPGTPIVLVGLKTDL 120
Query: 134 SEALSKQALVDQLGLESIT-------DREVCCYM-ISC--KDSINIDAVIDWLIKHS 180
+ + + + GLE +T + + I C K N+D V D I +
Sbjct: 121 RKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVA 177
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-05
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Query: 25 IGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN------------VTIKLWD 70
+G GKT+ + ++ I TVG F ++V + V ++LWD
Sbjct: 10 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHLQLWD 69
Query: 71 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 130
GQ RFR++ + R L + D S R+ + +L ++++GNK
Sbjct: 70 TAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVLIGNK 129
Query: 131 IDKSE-----ALSKQALVDQLGL 148
D + + L D+ G+
Sbjct: 130 ADLPDQREVSERQARELADKYGI 152
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-05
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQRRFRT 79
LIG GK+++++ + + T+G F R + T+K +WD GQ R+R
Sbjct: 17 LIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA 76
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 132
+ Y RG L V D R + + L E L + S I +++ GNK D
Sbjct: 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRE-LRDHADSNIVIMMAGNKSD 128
|
Length = 216 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 9e-05
Identities = 29/158 (18%), Positives = 67/158 (42%), Gaps = 8/158 (5%)
Query: 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQR 75
E ++ ++G GK++L +G + E PT+ RK V +++ D G
Sbjct: 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60
Query: 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
+F +M + Y + + V ++ + + +++ +P++++GNK+D
Sbjct: 61 QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVD--- 117
Query: 136 ALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
L + V ++ + C +M S K ++ +
Sbjct: 118 -LESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNEL 154
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|182934 PRK11058, PRK11058, GTPase HflX; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 22 LSLIGLQNAGKTSLVNTIATGG-YSED-MIPTVGFNMRKVTKGNV-TIKLWDLGGQRR-- 76
+SL+G NAGK++L N I Y+ D + T+ +R++ +V L D G R
Sbjct: 200 VSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL 259
Query: 77 -------FR-TMWERYCRGVSAILYVVDAAD-RDSVPIARSELHELLMKPSLSGIPLLVL 127
F+ T+ E R + +L+VVDAAD R I ++ +L + IP L++
Sbjct: 260 PHDLVAAFKATLQE--TRQATLLLHVVDAADVRVQENIE--AVNTVLEEIDAHEIPTLLV 315
Query: 128 GNKID 132
NKID
Sbjct: 316 MNKID 320
|
Length = 426 |
| >gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 27/96 (28%)
Query: 24 LIGLQNAGKTSLVNTI-------------ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
L+GL+ +GK+S+ + I AT + V F GN+T+ LWD
Sbjct: 4 LMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQS---HVRFL------GNLTLNLWD 54
Query: 71 LGGQRRF-----RTMWERYCRGVSAILYVVDAADRD 101
GQ F E V ++YV D R+
Sbjct: 55 CPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESRE 90
|
GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQ 74
+E ++ ++G GK+++ + + + PT+ + + + + D GQ
Sbjct: 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQ 60
Query: 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS-GIPLLVLGNKID 132
F M ++Y R + DR S A E EL+ + L+ IPL+++GNK+D
Sbjct: 61 AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEAS-EFKELITRVRLTEDIPLVLVGNKVD 118
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 25 IGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRTM 80
+G GK+ ++ G + +PT+G + ++KV+ N +++ +DL G + +
Sbjct: 6 MGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV 65
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHE----LLMKPSLSGIPLLVLGNKIDKS 134
+ + +L V D DR S S L E ++ I ++V NKID +
Sbjct: 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 7/164 (4%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFR 78
L +G GKT+L+ + TV K V VTI + D G F
Sbjct: 2 LVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSFP 61
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138
M + + A V D +S + E+L +P++V+GNKID L+
Sbjct: 62 AMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDS---LA 118
Query: 139 KQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIKHSK 181
++ + L ++ ++ S KD+ N+ V L++ +
Sbjct: 119 ERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQAN 162
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
| >gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 4e-04
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 70 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMK-PSLSGIPLLVLG 128
D GQ F M E+Y R L V DR S + H +++ P++++G
Sbjct: 56 DTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVD-KFHTQILRVKDRDEFPMILVG 114
Query: 129 NKIDKSEALSKQALV-DQLGLESITDREVCCYMISCKDSINIDA 171
NK D L Q V + G E ++ S KD +N+D
Sbjct: 115 NKAD----LEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDK 154
|
The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 4e-04
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 26/155 (16%)
Query: 31 GKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTMWERYCRG 87
GK++L G + +D PT+ + RK + + + + D GQ F M ++Y R
Sbjct: 12 GKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRT 71
Query: 88 VSAILYVVDAADRDSVPIARSELHELLMK-PSLSGIPLLVLGNKID--------KSEALS 138
L V DR S + + E +++ +P++++GNK D E
Sbjct: 72 GEGFLLVYSITDRQSFEEIK-KFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEG-- 128
Query: 139 KQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+ L Q G C ++ S K+ +N+D
Sbjct: 129 -KELARQWG---------CPFLETSAKERVNVDEA 153
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 4e-04
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQ---RRF 77
++G GKT L+ + T + + +PTV ++ G V + LWD GQ R
Sbjct: 5 VVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEYDRL 64
Query: 78 RTMWERYCRGVSAILYVVDAADRDSVP-IARSELHELLMKPSLSGIPLLVLGNKID 132
R + Y L S + E+ K +P++++G KID
Sbjct: 65 RPL--SYP-QTDVFLLCFSVDSPSSFENVKTKWYPEI--KHYCPNVPIILVGTKID 115
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 5e-04
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 33/174 (18%)
Query: 23 SLIGLQNAGKTSLVNTIATGG-YSEDMI-----PTVGFNMRKVT-KGNVTIKLWDLGGQR 75
+L+G NAGK++L N + Y+ D + PT R++ + L D G
Sbjct: 193 ALVGYTNAGKSTLFNALTGADVYAADQLFATLDPT----TRRLDLPDGGEVLLTDTVGFI 248
Query: 76 R---------FR-TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL 125
R FR T+ E R +L+VVDA+D D + ++L + IP L
Sbjct: 249 RDLPHELVAAFRATLEE--VREADLLLHVVDASDPDREEQIE-AVEKVLEELGAEDIPQL 305
Query: 126 VLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
++ NKID L+D+ +E + + +S K +D +++ + +
Sbjct: 306 LVYNKID---------LLDEPRIERLEEGYPEAVFVSAKTGEGLDLLLEAIAER 350
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like) [Unknown function, General]. Length = 351 |
| >gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 7e-04
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 9/156 (5%)
Query: 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKGNVTIKLW-DLGGQRRF 77
++L ++G +GK++LV+ TG Y + P G F + G + L D GG
Sbjct: 1 LKLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA 60
Query: 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137
++ V A+++V D S H+L ++S IPL+++G + D A
Sbjct: 61 -----QFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQ-DAISAS 114
Query: 138 SKQALVDQLGLESITDREVCCYMISCKD-SINIDAV 172
+ + + D + D + C Y +C +N++ V
Sbjct: 115 NPRVIDDARARQLCADMKRCSYYETCATYGLNVERV 150
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158 |
| >gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 7e-04
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 26/155 (16%)
Query: 31 GKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTMWERYCRG 87
GK++L G + ++ PT+ + RK + + + + D GQ F M ++Y R
Sbjct: 14 GKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRT 73
Query: 88 VSAILYVVDAADRDSVPIARSELHELLMK-PSLSGIPLLVLGNKID--------KSEALS 138
L V DR S + E +++ +P++++GNK D E
Sbjct: 74 GEGFLLVYSITDRQSFEEIA-KFREQILRVKDRDDVPIVLVGNKCDLENERVVSTEEG-- 130
Query: 139 KQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+ L Q G C ++ S K+ IN+D
Sbjct: 131 -KELARQWG---------CPFLETSAKERINVDEA 155
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 8e-04
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRF 77
L ++G GKT+ V TG + + PT+G + + G + WD GQ +F
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
Query: 78 RTMWE-RYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKID 132
+ + Y G AI+ + D R + VP +L + IP+++ GNK+D
Sbjct: 76 GGLRDGYYIHGQCAII-MFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVD 128
|
Length = 219 |
| >gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24) | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 8e-04
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 7/136 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIP-TVG--FNMRKVTKGN--VTIKLWDLGGQRRFR 78
++G ++ GKTSLV + T+G F +++ G VT+ +WD G R+
Sbjct: 5 MLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE 64
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138
M Y RG A + D D S A+ + EL + + + G K D E
Sbjct: 65 AMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL--QNLEEHCKIYLCGTKSDLIEQDR 122
Query: 139 KQALVDQLGLESITDR 154
VD ++ D
Sbjct: 123 SLRQVDFHDVQDFADE 138
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 9e-04
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ 145
+ V +L+VVDA + I + +L K P++++ NKID K+ L+
Sbjct: 83 KDVDLVLFVVDADE----KIGPGD-EFILEKLKKVKTPVILVLNKIDL--VKDKEELLPL 135
Query: 146 LGLESITDR----EVCCYMISCKDSINIDAVIDWLIKH 179
L E +++ E+ IS N+D ++D + K+
Sbjct: 136 L--EELSELMDFAEI--VPISALKGDNVDELLDVIAKY 169
|
Length = 292 |
| >gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1) | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.001
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 27/167 (16%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV--TKGNV-TIKLWDLGGQRRFRTM 80
++G GKT++V+ G + E PT+ RK+ +G V + + D G F M
Sbjct: 5 VLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAM 64
Query: 81 WERYCRGVSAI-----LYVVDAADRDS---VPIARSELHE-----LLMKPSLSGIPLLVL 127
R +S + + V +R+S V R ++ E IP+++
Sbjct: 65 -----RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119
Query: 128 GNKIDKSEALSKQAL-VDQLGLESITDREVCCYM-ISCKDSINIDAV 172
GNK D+ Q V+QL + E C Y +S K + N+D +
Sbjct: 120 GNKADRDFPREVQRDEVEQL----VGGDENCAYFEVSAKKNSNLDEM 162
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247 |
| >gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 36/176 (20%)
Query: 23 SLIGLQNAGKTSLVNTIATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDL---------G 72
+L+G NAGK++L N + Y D + + I+L D G
Sbjct: 196 ALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTR------RIELGDGRKVLLTDTVG 249
Query: 73 GQRR--------FRTMWERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIP 123
R F++ E + +L+VVDA+D + + + E + ++L + IP
Sbjct: 250 FIRDLPHPLVEAFKSTLEE-VKEADLLLHVVDASDPE--ILEKLEAVEDVLAEIGADEIP 306
Query: 124 LLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
++++ NKID L D+ L + IS K +D + + +I+
Sbjct: 307 IILVLNKIDL--------LEDEEILAELERGSPNPVFISAKTGEGLDLLRERIIEL 354
|
Length = 411 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.001
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQ--- 74
+L ++G GKTSL+ G + E+ PTV N +V V + LWD GQ
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62
Query: 75 RRFRTMWERYCRG-VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID- 132
R R + Y + V I + +D DS+ R++ E + + +P++++G K D
Sbjct: 63 ERLRPL--SYSKAHVILIGFAIDTP--DSLENVRTKWIEEVRR-YCPNVPVILVGLKKDL 117
Query: 133 KSEALSKQALVDQ 145
+ EA++K
Sbjct: 118 RQEAVAKGNYATD 130
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 8/154 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTM 80
LIG + GK+SL+ ++ + + E+ +P V + VT V + D + + R
Sbjct: 7 LIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEITIPADVTPERVPTTIVDTSSRPQDRAN 65
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG-IPLLVLGNKIDKSEALSK 139
R + I V ++ R L + L +P++++GNK D + S+
Sbjct: 66 LAAEIRKANVICLVYSVDRPSTLE--RIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ 123
Query: 140 QALVDQLGLESITDREV-CCYMISCKDSINIDAV 172
L +++ RE+ C S K IN+ V
Sbjct: 124 AGLEEEMLPIMNEFREIETCVECSAKTLINVSEV 157
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 28/170 (16%)
Query: 24 LIGLQNAGKTSLVNTIA---------TGGYSEDMIPTVGF-NMRKV----TKGNVTIKLW 69
++G N GK++L N + T G + D I R+ T G
Sbjct: 8 IVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDED 67
Query: 70 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129
+L R + + IL+VVD R+ + A E+ ++L + S P++++ N
Sbjct: 68 ELQELIREQALIAIEE--ADVILFVVDG--REGITPADEEIAKILRR---SKKPVILVVN 120
Query: 130 KIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
KID +A LG IS + I ++D +++
Sbjct: 121 KIDNLKAEELAYEFYSLGFGEP-------VPISAEHGRGIGDLLDAVLEL 163
|
Length = 444 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTM 80
++G ++ GK+SL G + E PT+ K+ +++ D GQ + +
Sbjct: 6 VLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEYSIL 65
Query: 81 WERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKID 132
++Y G+ + V R S V + ++ ++L K S +P++++GNK D
Sbjct: 66 PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKES---VPIVLVGNKSD 117
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases | Back alignment and domain information |
|---|
Score = 36.8 bits (85), Expect = 0.002
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 60 TKGNVTIKLWDLGGQRRFRTM---WERYCRGVSAILYVVDAAD 99
GN T+ LWD GQ F E + V A++YV+D D
Sbjct: 44 FLGNXTLNLWDCPGQDVFFEPTKDKEHIFQXVGALIYVIDVQD 86
|
Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175 |
| >gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional | Back alignment and domain information |
|---|
Score = 36.8 bits (85), Expect = 0.002
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQR 75
E +L ++G GK++L + ++ PT+ + RK + + + + D GQ
Sbjct: 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQE 64
Query: 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 132
+ M ++Y R L V R S S ++L +P++++GNK D
Sbjct: 65 EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCD 121
|
Length = 189 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.003
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 91 ILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKID-----KSEALSKQALVD 144
+++VVD D P + L EL+ P++++GNKID KQ +
Sbjct: 37 VVHVVDIFD---FPGSLIPGLAELI-----GAKPVILVGNKIDLLPKDVKPNRLKQWVKK 88
Query: 145 QLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181
+L + + ++V +S K ++ +I+ + K +K
Sbjct: 89 RLKIGGLKIKDVIL--VSAKKGWGVEELIEEIKKLAK 123
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 35.3 bits (82), Expect = 0.004
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 25/123 (20%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG-------FNMRKVTKGNVTIKLWDLGGQRR 76
L+G N GK++L+N + + + V + V I L D G
Sbjct: 4 LVGRPNVGKSTLINAL-----TGAKVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLIE 58
Query: 77 ------FRTMWERYCRGVS---AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVL 127
+ R+ + IL VVDA + + E+ E L K L P++++
Sbjct: 59 GASEGKGVEGFNRFLEAIREADLILLVVDA--SEGLTEDDEEILEELEK--LPKKPIILV 114
Query: 128 GNK 130
NK
Sbjct: 115 LNK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.004
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFR 78
++++G GK++L T + + P + + + V++++ D GQ++
Sbjct: 2 IAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQNE 61
Query: 79 T--MWERYCRGVSAILYVVDAADRDSVPIARSELHELL--MKPSLSGIPLLVLGNKID 132
ER R + V DR S + L +L+ +K IP++++GNK D
Sbjct: 62 DPESLERSLRWADGFVLVYSITDRSSFDVVSQ-LLQLIREIKKRDGEIPVILVGNKAD 118
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42 | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.004
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQRRFRTM 80
L+G GKTSL+ + T GY + +PT F++ + G V ++L D GQ F +
Sbjct: 5 LVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL 64
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.004
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 31 GKTSLVNTIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQ 74
GKT L+ T + ED +PTV N +V V + LWD GQ
Sbjct: 10 GKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQ 56
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 184 | |||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 100.0 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 100.0 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 100.0 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 100.0 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 100.0 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 100.0 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 100.0 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 100.0 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 100.0 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 100.0 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 100.0 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 100.0 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 100.0 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 100.0 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 100.0 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 100.0 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 100.0 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 100.0 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 100.0 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 100.0 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 100.0 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 100.0 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 100.0 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 100.0 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 100.0 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 100.0 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 100.0 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 100.0 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 100.0 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 100.0 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 100.0 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 100.0 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 100.0 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 100.0 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 100.0 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 100.0 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 100.0 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 100.0 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 100.0 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 100.0 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 100.0 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 100.0 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 100.0 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 100.0 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 100.0 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.98 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.98 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.98 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.98 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.98 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.98 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.98 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.98 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.98 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.98 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.98 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.97 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.97 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.97 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.97 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.97 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.97 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.97 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.97 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.97 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.97 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.97 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.97 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.97 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.97 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.97 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.97 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.97 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.97 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.97 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.97 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.97 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.97 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.96 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.96 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.96 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.96 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.96 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.96 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.96 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.96 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.96 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.96 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.96 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.95 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.95 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.95 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.95 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.95 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.95 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.95 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.94 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.94 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.94 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.94 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.94 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.94 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.94 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.94 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.94 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.94 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.94 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.94 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.94 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.93 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.93 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.93 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.93 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.93 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.93 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.93 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.93 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.93 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.93 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.93 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.93 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.93 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.93 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.93 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.92 | |
| PTZ00099 | 176 | rab6; Provisional | 99.92 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.92 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.92 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.92 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.92 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.92 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.92 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.91 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.91 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.91 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.91 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.91 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.91 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.91 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.91 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.91 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.91 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.91 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.9 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.9 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.9 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.9 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.9 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.9 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.9 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.9 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.9 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.89 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.89 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.89 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.89 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.89 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.89 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.89 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.89 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.89 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.88 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.88 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.88 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.88 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.88 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.88 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.87 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.87 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.87 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.87 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.87 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.86 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.86 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.86 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.86 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.86 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.86 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.85 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.85 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.85 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.84 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.84 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.84 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.84 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.84 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.84 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.84 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.83 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.83 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.83 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.83 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.83 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.83 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.83 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.82 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.82 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.82 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.82 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.82 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.82 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.82 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.81 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.81 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.81 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.81 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.81 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.81 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.8 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.8 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.8 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.79 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.79 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.78 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.78 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.77 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.77 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.77 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.76 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.76 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.76 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.74 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.74 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.74 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.74 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.73 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.73 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.73 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.73 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.71 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.7 | |
| PRK13768 | 253 | GTPase; Provisional | 99.69 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.68 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.68 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.67 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.66 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.64 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.63 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.62 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.61 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.61 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.61 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.61 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.61 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.61 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.6 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.6 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.59 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.59 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.58 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.58 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.57 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.57 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.57 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.57 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.56 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.55 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.54 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.52 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.51 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.49 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.49 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.49 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.49 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.48 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.48 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.47 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.46 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 99.44 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.43 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 99.41 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.41 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.41 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 99.34 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.32 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.31 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.31 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.28 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.28 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.27 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.26 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.24 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.24 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 99.22 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 99.21 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.21 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 99.2 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 99.18 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 99.17 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.17 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.16 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.16 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.15 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 99.13 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.11 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.1 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.1 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 99.09 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 99.08 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.06 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 99.06 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 99.02 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 99.02 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 99.01 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 99.0 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 99.0 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.99 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.96 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.95 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.94 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.93 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.93 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.92 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.91 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.89 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.88 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.88 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.88 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.87 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.87 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.85 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.84 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.83 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.81 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.8 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.79 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.75 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.74 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.74 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.72 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.7 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.7 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.67 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.67 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.66 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.65 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.65 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.64 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.63 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.61 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.59 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.57 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.57 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.53 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.5 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.5 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.5 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.48 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.48 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.47 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.44 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.41 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.36 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.34 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 98.32 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 98.31 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.31 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.28 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.25 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.25 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.24 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 98.2 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.15 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 98.13 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 98.13 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 98.11 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.09 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 98.06 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 98.05 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 98.04 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 98.03 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 98.03 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.02 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 98.0 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.99 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.99 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.98 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.97 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 97.96 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.96 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.96 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.94 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.93 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 97.92 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.92 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.92 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.91 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.9 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.89 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.87 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 97.85 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.84 | |
| PRK06696 | 223 | uridine kinase; Validated | 97.83 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 97.83 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.83 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.82 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.82 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.81 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.8 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 97.8 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.8 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.79 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.79 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.78 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 97.78 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.77 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.76 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.75 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.75 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.75 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 97.74 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.72 | |
| PF05729 | 166 | NACHT: NACHT domain | 97.71 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.69 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.66 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.66 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 97.65 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 97.65 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.64 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.63 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 97.62 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.62 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.61 | |
| KOG2743 | 391 | consensus Cobalamin synthesis protein [Coenzyme tr | 97.61 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.61 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.61 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.6 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.6 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.6 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.59 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 97.58 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.58 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.57 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.55 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.54 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.54 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.53 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.53 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.53 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.53 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 97.53 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 97.52 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.52 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 97.52 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 97.52 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.52 | |
| PLN02674 | 244 | adenylate kinase | 97.52 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.51 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.51 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.51 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.51 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.5 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 97.5 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.49 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 97.49 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 97.49 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 97.47 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.47 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 97.46 |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=207.40 Aligned_cols=172 Identities=34% Similarity=0.630 Sum_probs=148.8
Q ss_pred HhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCE
Q 030000 11 LRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSA 90 (184)
Q Consensus 11 ~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (184)
.++.+.++.+||+++|+.+||||||++++..+.+. .+.+|.+.....++..++.+.+||+||++++...+..+++++|+
T Consensus 9 ~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~ 87 (181)
T PLN00223 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
T ss_pred HHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 34445577899999999999999999999887775 46788888888888889999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|+|+++++++.....++..++......++|+++++||+|+....+.+++.+.++......+.+.++++||++|+|++
T Consensus 88 iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 99999999999999888888877665444679999999999998877778888888776555566678899999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
++|+||.+.+.++
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988764
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=204.36 Aligned_cols=157 Identities=30% Similarity=0.491 Sum_probs=136.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.-|||+++|+.|+|||+|+.++..+.+...+..|+|+.+.. ++.+.+++++|||+||++|++....+|++++++|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 35999999999999999999999999999999999977764 55677999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-----HHHHHHHhCCCccCCCcee-EEEeeeccCC
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-----KQALVDQLGLESITDREVC-CYMISCKDSI 167 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 167 (184)
|||+++.+||.++..|+.++-++.. .++|.++|+||+|+.+... .+++...++. + ++++||+++.
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~--------~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGI--------PIFLETSAKDST 158 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHHHHHhcCC--------cceeecccCCcc
Confidence 9999999999999999999866544 6799999999999976432 2333333332 4 9999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030000 168 NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~~ 183 (184)
|++++|..|...++.+
T Consensus 159 NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 159 NVEDAFLTLAKELKQR 174 (205)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999888764
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=201.61 Aligned_cols=171 Identities=33% Similarity=0.618 Sum_probs=144.9
Q ss_pred HhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCE
Q 030000 11 LRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSA 90 (184)
Q Consensus 11 ~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (184)
+++...++.+||+++|++|||||||++++..+.+.. +.+|.+.....+...++.+.+||+||++++...+..+++++|+
T Consensus 9 ~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ 87 (182)
T PTZ00133 9 FKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNG 87 (182)
T ss_pred HHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 444556778999999999999999999998777764 5678887777778888999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|+|++++.++.....++..++......++|+++|+||.|+.+.....++.+.++......+.+.++++||++|.|++
T Consensus 88 iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 88 LIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 99999999999999888888877655444578999999999997666666777777765555556678899999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|++|.+.+.+
T Consensus 168 e~~~~l~~~i~~ 179 (182)
T PTZ00133 168 EGLDWLSANIKK 179 (182)
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=197.69 Aligned_cols=163 Identities=22% Similarity=0.353 Sum_probs=140.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.+|++++|+.++||||||++++.+.|...+.+|+|+++.. ++...+.+++|||+||++|+++.+.|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 45999999999999999999999999999999999977654 45667999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|||+++..+|++...|+....+.....++-+++|+||.||.+..... ...+....+..+..|.++||+.|+||.++|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs---~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVS---IEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhh---HHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 99999999999999999999999888789999999999997764322 222222223334579999999999999999
Q ss_pred HHHHHHhhhc
Q 030000 174 DWLIKHSKTA 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
..|...++.+
T Consensus 178 rrIaa~l~~~ 187 (221)
T KOG0094|consen 178 RRIAAALPGM 187 (221)
T ss_pred HHHHHhccCc
Confidence 9998887653
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=200.95 Aligned_cols=166 Identities=34% Similarity=0.631 Sum_probs=143.1
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..++.+||+++|++|||||||++++..+.+. .+.+|.+.....+....+.+.+||+||++++...+..+++++|++|+|
T Consensus 9 ~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 9 FGNKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 3456799999999999999999999877774 466888887777778889999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+|++++.++.....++..++......++|+++|+||+|+......+++.+.++......+.+.++++||++|.|++++|+
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~ 167 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLT 167 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHH
Confidence 99999999999998888887654446799999999999977666677777777665556677788999999999999999
Q ss_pred HHHHHhh
Q 030000 175 WLIKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
||.+.+.
T Consensus 168 ~l~~~~~ 174 (175)
T smart00177 168 WLSNNLK 174 (175)
T ss_pred HHHHHhc
Confidence 9988764
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=196.88 Aligned_cols=161 Identities=25% Similarity=0.416 Sum_probs=136.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Eeec--CEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|+.++|||||+-|+..+.|.+...+|+|..+.. +... .+++.||||+|+++|+++-+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 357999999999999999999999999999889999955543 4433 488999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cCHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|||+++.+||.....|+.++..... +++-+.+|+||+|+.+. ...++...... ..+..++++||++|.|++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe-----~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAE-----SQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHH-----hcCCEEEEEecccccCHH
Confidence 99999999999999999999977765 78888899999999873 22333222221 234469999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
++|..|.+.++..
T Consensus 157 ~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 157 EIFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHHHhccCc
Confidence 9999999998764
|
|
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=186.88 Aligned_cols=183 Identities=72% Similarity=1.168 Sum_probs=175.5
Q ss_pred CchHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh
Q 030000 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 80 (184)
|++++....|+++.+-+.++.+.++|..+||||||++.+..+.+.+...||.|++..++..+++.+.+||.||+++|++.
T Consensus 2 ~~~~~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsm 81 (186)
T KOG0075|consen 2 CAKLRKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 81 (186)
T ss_pred hhHHHHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEE
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|..|++.+++++||+|+.+++........+..++......++|+++++||.|+..+-....+.+++++.....+++..|.
T Consensus 82 WerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~s 161 (186)
T KOG0075|consen 82 WERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFS 161 (186)
T ss_pred HHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCHHHHHHHHHHHhhhc
Q 030000 161 ISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
+|+++..||+.+.+|+.++-...
T Consensus 162 iScke~~Nid~~~~Wli~hsk~~ 184 (186)
T KOG0075|consen 162 ISCKEKVNIDITLDWLIEHSKSL 184 (186)
T ss_pred EEEcCCccHHHHHHHHHHHhhhh
Confidence 99999999999999999987653
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=197.77 Aligned_cols=161 Identities=35% Similarity=0.646 Sum_probs=137.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++.+||+++|++|+|||||++++..+.+. .+.+|.+.....+....+.+.+||+||++++...+..+++++|++++|+|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D 85 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 85 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 56799999999999999999999877765 45678887777777888999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
++++.++.....++...+......++|+++|+||+|+......++..+.++........++++++||++|.|++++|+||
T Consensus 86 ~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 86 SADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred CCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 99999999998888888765444578999999999997655666777776655445556689999999999999999999
Q ss_pred HH
Q 030000 177 IK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 166 ~~ 167 (168)
T cd04149 166 SS 167 (168)
T ss_pred hc
Confidence 65
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=194.78 Aligned_cols=158 Identities=33% Similarity=0.637 Sum_probs=135.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+||+++|.+|||||||++++..+.+. .+.+|.+.....+....+.+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC
Confidence 58999999999999999999888776 46788888777778888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 100 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
+.++.....++..+.......+.|+++++||+|+......+++.+.+.......+.+.++++||++|.|++++|+||.+
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 80 RERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 9999999888887765544456899999999999765555566666665555556677889999999999999999865
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=191.08 Aligned_cols=170 Identities=36% Similarity=0.722 Sum_probs=152.1
Q ss_pred HHhhhhc-cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 10 WLRSLFF-KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 10 ~~~~~~~-~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
.+++... +++.+|+++|+.||||||+++++..+... ...||.|.....+...++.+.+||.+|+..++..|..+++++
T Consensus 4 ~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~ 82 (175)
T PF00025_consen 4 VLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNA 82 (175)
T ss_dssp HHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTE
T ss_pred HHHHhcccCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeeeCcEEEEEEeccccccccccceeecccc
Confidence 3444443 78899999999999999999999876544 477899999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccC-CCceeEEEeeeccCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT-DREVCCYMISCKDSI 167 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 167 (184)
|++|||+|+++.+.+......+..++......++|+++++||+|+......+++.+.+.+.... .+.+.++.|||.+|+
T Consensus 83 ~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~ 162 (175)
T PF00025_consen 83 DGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE 162 (175)
T ss_dssp SEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred ceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence 9999999999999999999999999887666789999999999998888888888888877765 678899999999999
Q ss_pred CHHHHHHHHHHHh
Q 030000 168 NIDAVIDWLIKHS 180 (184)
Q Consensus 168 ~i~~l~~~i~~~~ 180 (184)
|+.+.++||.+.+
T Consensus 163 Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 163 GVDEGLEWLIEQI 175 (175)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC
Confidence 9999999999864
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=189.16 Aligned_cols=161 Identities=30% Similarity=0.582 Sum_probs=135.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
||+++|++|||||||++++.++.+. .+.+|.+.....++..++.+.+||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~ 79 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHR 79 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcH
Confidence 6899999999999999999988765 467888887777888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc-CCCceeEEEeeeccCCCHHHHHHHHHHH
Q 030000 101 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
.++.....|+..++......+.|+++++||+|+......++..+.+..... ..+.+.++++||++|.||+++|+|+.+.
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 80 DRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred HHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 999999999988876654556899999999999766566666555543322 2234578899999999999999999987
Q ss_pred hhh
Q 030000 180 SKT 182 (184)
Q Consensus 180 ~~~ 182 (184)
+..
T Consensus 160 ~~~ 162 (169)
T cd04158 160 LVA 162 (169)
T ss_pred Hhh
Confidence 654
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=188.70 Aligned_cols=161 Identities=30% Similarity=0.578 Sum_probs=138.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|++|+|||||++++..+.+.. ..+|.+.....+......+.+||+||++++...+..+++++|++++|+|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 357899999999999999999999888764 5788888877888888999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
+++++++.....++..++......++|+++++||+|+....+.+++.+.++........++++++||++|+|+++++++|
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 99998888888888877665545679999999999997655666777777655444556789999999999999999999
Q ss_pred HH
Q 030000 177 IK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 172 ~~ 173 (174)
T cd04153 172 AS 173 (174)
T ss_pred hc
Confidence 75
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=187.84 Aligned_cols=154 Identities=21% Similarity=0.330 Sum_probs=133.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+|++++|+.|+|||+|+.+++...|.+....|+|+.+. .++...+++++|||+|++.|++....+++.+.++++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 3689999999999999999999999999999999996654 366778999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-----HHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|||+++.++|..+..|+..+..+. .++..+++++||+|+....++ +.+.+..+ ..++++||++++|
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehg--------LifmETSakt~~~ 155 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHG--------LIFMETSAKTAEN 155 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcC--------ceeehhhhhhhhh
Confidence 999999999999999999996654 478999999999999664332 33444433 4689999999999
Q ss_pred HHHHHHHHHHHh
Q 030000 169 IDAVIDWLIKHS 180 (184)
Q Consensus 169 i~~l~~~i~~~~ 180 (184)
++|+|......+
T Consensus 156 VEEaF~nta~~I 167 (216)
T KOG0098|consen 156 VEEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999998776655
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=188.97 Aligned_cols=161 Identities=32% Similarity=0.605 Sum_probs=135.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|++|||||||++++.+..+ ....+|.++....+....+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVD 90 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 4568999999999999999999987644 356678887777777778999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
++++.++.....++..++......++|+++++||+|+.+....++..+.+.........++++++||++|.|++++++++
T Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 91 SSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 99998998888888877665445689999999999997765666666666544334556789999999999999999998
Q ss_pred HH
Q 030000 177 IK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 171 ~~ 172 (173)
T cd04154 171 VD 172 (173)
T ss_pred hc
Confidence 75
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=183.89 Aligned_cols=171 Identities=34% Similarity=0.665 Sum_probs=161.7
Q ss_pred hhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 13 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.++.+++.+|+++|..++||||++.++..+++... .||+|++...++.++..+.+||.+|+++++..|..|+++.+++|
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 46778999999999999999999999988887655 99999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+|.+|++++......+..++......+.|+++++||.|+...-+..++.+.+++..+..+.+.+..|||.+|+|+.+.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHH
Confidence 99999999999999999999999888789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcC
Q 030000 173 IDWLIKHSKTAK 184 (184)
Q Consensus 173 ~~~i~~~~~~~~ 184 (184)
++|+.+.+.+++
T Consensus 170 l~wl~~~~~~~~ 181 (181)
T KOG0070|consen 170 LDWLSNNLKKRR 181 (181)
T ss_pred HHHHHHHHhccC
Confidence 999999988754
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=193.54 Aligned_cols=158 Identities=22% Similarity=0.368 Sum_probs=125.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.|+++|..|+|||||++++..+.+...+.+|.+..+. .+.. ..+.+++||++|++++...+..+++++|++|+|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999999998888888875443 3443 34889999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
++++++|+.+..|+..+. .....++|+++|+||+|+...... .+..+.+... ...+.++++||++|.||+++|++
T Consensus 82 vtd~~Sf~~l~~w~~~i~-~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~---~~~~~~~etSAktg~gV~e~F~~ 157 (202)
T cd04120 82 ITKKETFDDLPKWMKMID-KYASEDAELLLVGNKLDCETDREISRQQGEKFAQQ---ITGMRFCEASAKDNFNVDEIFLK 157 (202)
T ss_pred CcCHHHHHHHHHHHHHHH-HhCCCCCcEEEEEECcccccccccCHHHHHHHHHh---cCCCEEEEecCCCCCCHHHHHHH
Confidence 999999999998887653 333467999999999998643222 1111111100 11346999999999999999999
Q ss_pred HHHHhhh
Q 030000 176 LIKHSKT 182 (184)
Q Consensus 176 i~~~~~~ 182 (184)
+.+.+.+
T Consensus 158 l~~~~~~ 164 (202)
T cd04120 158 LVDDILK 164 (202)
T ss_pred HHHHHHH
Confidence 9987754
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=189.92 Aligned_cols=157 Identities=25% Similarity=0.427 Sum_probs=134.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|||||+++.++..+.|...+.+|+|+.+.. .....+.+++|||+||++|+.....|++.+++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 356999999999999999999999999999999999977754 3455688999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-----HHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-----KQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|||+++..+|+++..|+..+ .......+|.++|+||+|+..... -+.+...+ +++++++||++|.
T Consensus 90 LvyDitne~Sfeni~~W~~~I-~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~--------G~~F~EtSAk~~~ 160 (207)
T KOG0078|consen 90 LVYDITNEKSFENIRNWIKNI-DEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREY--------GIKFFETSAKTNF 160 (207)
T ss_pred EEEEccchHHHHHHHHHHHHH-HhhCCCCCcEEEeeccccccccccccHHHHHHHHHHh--------CCeEEEccccCCC
Confidence 999999999999999977766 444556999999999999966322 13333333 3469999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
||++.|-.+.+.+.+
T Consensus 161 NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 161 NIEEAFLSLARDILQ 175 (207)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988874
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=191.71 Aligned_cols=159 Identities=18% Similarity=0.272 Sum_probs=128.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|.+|+|||||++++..+.+...+.+|.+..+. . +....+.+.+||+||++++...+..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 479999999999999999999999998888888875443 2 3344578999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|++++.++.....|+..+.......++|+++|+||+|+...... ++.. .+ ....++++++|||++|.||+++|
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~----a~~~~~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR-NL----AREFNCPFFETSAALRHYIDDAF 156 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHH-HH----HHHhCCEEEEEecCCCCCHHHHH
Confidence 99999999999887766544434467999999999998653222 1111 11 11234579999999999999999
Q ss_pred HHHHHHhhh
Q 030000 174 DWLIKHSKT 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++...+.+
T Consensus 157 ~~l~~~~~~ 165 (172)
T cd04141 157 HGLVREIRR 165 (172)
T ss_pred HHHHHHHHH
Confidence 999987764
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=185.43 Aligned_cols=158 Identities=32% Similarity=0.662 Sum_probs=131.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGY-SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+|+++|++|||||||++++.+..+ ...+.+|.+.....+...++.+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998763 5566788887777777788999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCC--CCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHH
Q 030000 100 RDSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 177 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 177 (184)
+.++.....++..+.... ...++|+++++||+|+.+.....+..+.++........++++++||++|.|+++++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 988888888877776542 235799999999999976555556666655443334456799999999999999999986
Q ss_pred H
Q 030000 178 K 178 (184)
Q Consensus 178 ~ 178 (184)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=189.32 Aligned_cols=158 Identities=20% Similarity=0.343 Sum_probs=128.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|..|+|||||+.++..+.+...+.+|.+..+. .+ +...+.+++||++|++++...+..+++++|++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 4689999999999999999999998887777777665442 23 3345889999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|||++++.+|..+..|+..+.... ++.|+++|+||.|+.... ..++..+.. ....++++++||++|.||++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a-----~~~~~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYA-----ERNGMTFFEVSPLCNFNITE 157 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHH-----HHcCCEEEEecCCCCCCHHH
Confidence 999999999999999988885543 579999999999996422 222222211 12345799999999999999
Q ss_pred HHHHHHHHhhh
Q 030000 172 VIDWLIKHSKT 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+++.+.+..
T Consensus 158 ~F~~l~~~i~~ 168 (189)
T cd04121 158 SFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=187.49 Aligned_cols=167 Identities=24% Similarity=0.404 Sum_probs=136.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
.+..+||+++|++|+|||||++++.+.+|...+..|+|..+.. ++...+.++||||+||++|.++-..+++++|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 3456999999999999999999999999999999999966554 445568899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
++|||.+++.+|+++..|..+++.+.. ...-|+++++||+|+......+...+....-......+|+|++|||.+.|
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 999999999999999999999988754 34579999999999966332211111111001123467999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
|.+.|..+...+..
T Consensus 166 V~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 166 VDEAFEEIARRALA 179 (210)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=191.21 Aligned_cols=163 Identities=20% Similarity=0.266 Sum_probs=126.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..+||+++|+.|+|||||+.++..+.+...+.+|.+..+. .++...+.+.+|||+|++++...+..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 3589999999999999999999999998888899886554 2445568899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc---------cCCCc-eeEEEeee
Q 030000 95 VDAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------ITDRE-VCCYMISC 163 (184)
Q Consensus 95 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~Sa 163 (184)
||++++.+|+.+.. |...+... .+++|+++|+||.|+.+.....+......... ....+ ++++++||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999974 55544332 25799999999999965322111111111000 01112 47999999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++|+||+++|+++.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987654
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=181.91 Aligned_cols=162 Identities=26% Similarity=0.406 Sum_probs=139.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|+.|+|||||+-+|..+.|.+....|+|.++. .+....+++.+|||+||++|+.+.+.|++.+.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 3599999999999999999999999999999899996654 356777999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|||++.+++|..+..|+.++-.+...+++-.++|+||+|..++. ...+..++...+...+.++++||++.+|++..|
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R---~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESER---VVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcc---cccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 99999999999999999999888888899999999999974322 222333344445566779999999999999999
Q ss_pred HHHHHHhhh
Q 030000 174 DWLIKHSKT 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+.+.+.+
T Consensus 167 eelveKIi~ 175 (209)
T KOG0080|consen 167 EELVEKIIE 175 (209)
T ss_pred HHHHHHHhc
Confidence 999988764
|
|
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=187.91 Aligned_cols=156 Identities=23% Similarity=0.332 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||+.++..+.+...+.+|.+..+.. ++...+.+.+|||+|++++......++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 689999999999999999999999988888998754432 34456889999999999999999999999999999999
Q ss_pred CCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCccccc------------CHHHHHHHhCCCccCCCce-eEEEee
Q 030000 97 AADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEAL------------SKQALVDQLGLESITDREV-CCYMIS 162 (184)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~S 162 (184)
++++.+|+.+ ..|+..+.... +++|+++|+||+|+.+.. ..++. +.+. ...+. ++++||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~-~~~a----~~~~~~~~~E~S 154 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQG-EELR----KQIGAAAYIECS 154 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHH-HHHH----HHcCCCEEEECC
Confidence 9999999998 57777664432 479999999999995431 11111 1111 11223 599999
Q ss_pred eccCCCHHHHHHHHHHHhhh
Q 030000 163 CKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~ 182 (184)
|++|.||+++|+.+.+.+.+
T Consensus 155 Ak~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 155 SKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred CCcccCHHHHHHHHHHHHhc
Confidence 99999999999999987654
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=173.57 Aligned_cols=178 Identities=31% Similarity=0.579 Sum_probs=157.6
Q ss_pred CchHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh
Q 030000 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 80 (184)
|+++.-++..... +++++|+++|..||||||+++++.+.. .....||.|+...+...+.+++++||.+||...++.
T Consensus 1 mg~lsilrk~k~k---erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~ 76 (185)
T KOG0073|consen 1 MGLLSILRKQKLK---EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSY 76 (185)
T ss_pred CcHHHHHHHHHhh---hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEecceEEEEEEcCCcchhHHH
Confidence 5666666655422 358999999999999999999996544 667889999999999999999999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc-CCCceeEE
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCY 159 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (184)
|..|+.++|++|+|+|..++.+++.....+...+.....-+.|++++.||.|+......+++...+.+... ...+++++
T Consensus 77 W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~ 156 (185)
T KOG0073|consen 77 WKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLV 156 (185)
T ss_pred HHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEE
Confidence 99999999999999999999999999999998887766677999999999999887888888888888776 77899999
Q ss_pred EeeeccCCCHHHHHHHHHHHhhh
Q 030000 160 MISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 160 ~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.||+.+|+++.+-++|+.+.+-+
T Consensus 157 ~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 157 KCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred EEeccccccHHHHHHHHHHHHHH
Confidence 99999999999999999987754
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=183.96 Aligned_cols=157 Identities=34% Similarity=0.574 Sum_probs=136.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
+|+++|++|||||||++++.+. +...+.+|.+.....+...++.+++||+||++.+...+..+++++|++++|+|+++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDD 79 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCch
Confidence 4899999999999999999866 666778899988778888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccC---CCceeEEEeeeccC------CCHHH
Q 030000 101 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT---DREVCCYMISCKDS------INIDA 171 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~i~~ 171 (184)
.++.....++..+.......++|+++|+||+|+.......++.+.+...... ...+.+++|||++| .|+.+
T Consensus 80 ~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 80 DRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred hHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHH
Confidence 9999999998888766555689999999999998877777777777665443 23567888999998 89999
Q ss_pred HHHHHHH
Q 030000 172 VIDWLIK 178 (184)
Q Consensus 172 l~~~i~~ 178 (184)
.|+|+.+
T Consensus 160 ~~~wl~~ 166 (167)
T cd04161 160 GLRWLLA 166 (167)
T ss_pred HHHHHhc
Confidence 9999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=184.53 Aligned_cols=162 Identities=31% Similarity=0.553 Sum_probs=137.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|.+|||||||++++.++.+. .+.+|.+.....+...++++.+||+||+..+...+..+++++|++++|+|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD 93 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVD 93 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 66799999999999999999999987664 34567776666777788999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccC-------CCceeEEEeeeccCCCH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT-------DREVCCYMISCKDSINI 169 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i 169 (184)
++++.++.....++..++......++|+++++||+|+......+++.+.+++.... .+...+++|||++|+|+
T Consensus 94 ~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~ 173 (184)
T smart00178 94 AYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGY 173 (184)
T ss_pred CCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCCh
Confidence 99998888888888877665445679999999999997766778888888764422 25678999999999999
Q ss_pred HHHHHHHHHH
Q 030000 170 DAVIDWLIKH 179 (184)
Q Consensus 170 ~~l~~~i~~~ 179 (184)
+++++||.+.
T Consensus 174 ~~~~~wl~~~ 183 (184)
T smart00178 174 GEGFKWLSQY 183 (184)
T ss_pred HHHHHHHHhh
Confidence 9999999875
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=182.28 Aligned_cols=157 Identities=39% Similarity=0.707 Sum_probs=129.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
||+++|++++|||||++++..+.+. ...+|.+.....++..+..+.+||+||++.+...+..+++.++++++|+|++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 79 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDR 79 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 6899999999999999999877765 356777777777778889999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 101 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
.++.....++..+++.....+.|+++++||+|+.+.....++.+.++.........+++++||++|.|++++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 80 DRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 777776676766655444457999999999999765555556555554434445568999999999999999999875
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=186.62 Aligned_cols=158 Identities=17% Similarity=0.235 Sum_probs=125.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+..+||+++|++|+|||||+.++..+.+...+.+|.+..+. .++...+.+.+|||+|++++......+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 35689999999999999999999999998888888875543 234456889999999999999999999999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCcccc--------------cCHHHHHHHhCCCccCCCc-ee
Q 030000 94 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEA--------------LSKQALVDQLGLESITDRE-VC 157 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~-~~ 157 (184)
|||++++.+|..+ ..|...+.... ++.|+++|+||+|+.+. ...++..+ .....+ .+
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~-----~a~~~~~~~ 155 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN-----MAKQIGAAT 155 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH-----HHHHcCCCE
Confidence 9999999999997 67777665432 57999999999998542 11111111 111223 37
Q ss_pred EEEeeeccCCC-HHHHHHHHHHHhh
Q 030000 158 CYMISCKDSIN-IDAVIDWLIKHSK 181 (184)
Q Consensus 158 ~~~~Sa~~~~~-i~~l~~~i~~~~~ 181 (184)
+++|||++|+| |+++|+.+...+.
T Consensus 156 ~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 156 YIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred EEECCcCCCCCCHHHHHHHHHHHHh
Confidence 99999999998 9999999988654
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=184.55 Aligned_cols=164 Identities=28% Similarity=0.521 Sum_probs=130.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe-----ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+.+||+++|++|||||||++++..+.+... .+|.+....... ...+.+.+||+||++++...+..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998877644 566665544432 24688999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccC-CCceeEEEeeeccCCCHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT-DREVCCYMISCKDSINIDA 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|+|++++.++.....++..+.......+.|+++++||+|+.+.....+....+...... ...++++++||++|+|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 999999988888888777777665555679999999999987655555555554433222 2346789999999999999
Q ss_pred HHHHHHHHhhh
Q 030000 172 VIDWLIKHSKT 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
++++|.+.+.+
T Consensus 161 l~~~l~~~l~~ 171 (183)
T cd04152 161 GLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=188.02 Aligned_cols=160 Identities=26% Similarity=0.404 Sum_probs=128.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe---ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT---KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|+|||||++++.++.+...+.+|.+..+. .+. ...+.+.+||+||++++...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999999988888888885443 333 3468899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcC---CCCCCCcEEEEEeCCCccc--ccCHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 95 VDAADRDSVPIARSELHELLMK---PSLSGIPLLVLGNKIDKSE--ALSKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~iivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
||+++++++..+..|+..+... ....++|+++|+||+|+.. ....++..+..... ....++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 9999999999998887766432 2236789999999999963 23333333322211 1146999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030000 170 DAVIDWLIKHSKTA 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
+++|+++.+.+.+.
T Consensus 157 ~e~f~~l~~~l~~~ 170 (201)
T cd04107 157 EEAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=188.12 Aligned_cols=161 Identities=20% Similarity=0.307 Sum_probs=130.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...+||+++|++|+|||||++++..+.+...+.+|.+..+.. ++...+.+++|||||++++...+..++++++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 346999999999999999999999998887788887755542 44556789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|+++++++.....|...+.+.....++|+++++||+|+.+.. ...+..+... ....+++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK-----SFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HhCCEEEEeeCCCCCCHHH
Confidence 99999999999999988888766555689999999999985432 2111111111 1134799999999999999
Q ss_pred HHHHHHHHhhh
Q 030000 172 VIDWLIKHSKT 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+++.+.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=183.39 Aligned_cols=158 Identities=20% Similarity=0.331 Sum_probs=127.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
++||+++|.+|+|||||+++++.+.+...+.+|.+..+. . +....+.+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 479999999999999999999988887777777764332 2 3344577889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|.++..+++....|+..+.......+.|+++++||+|+..... .+.. +.+. .....+++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLA----RQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHH----HHhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999999988887665567899999999999965322 1211 1111 0112479999999999999999
Q ss_pred HHHHHHhh
Q 030000 174 DWLIKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+++.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=182.02 Aligned_cols=155 Identities=35% Similarity=0.629 Sum_probs=133.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD 101 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 101 (184)
|+++|++|+|||||++++.++.+...+.+|.+.....+...++.+.+||+||++++...+..+++++|++++|+|++++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 78999999999999999999888888889988877778888999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc-CCCceeEEEeeecc------CCCHHHHHH
Q 030000 102 SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCKD------SINIDAVID 174 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~i~~l~~ 174 (184)
++.....|+..+.... .++|+++|+||+|+.......++.+.++.... ....+.++++||++ ++|+.++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 8988888888775442 58999999999999776666666666554444 34567889999988 999999999
Q ss_pred HHHH
Q 030000 175 WLIK 178 (184)
Q Consensus 175 ~i~~ 178 (184)
.++.
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8764
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=182.51 Aligned_cols=163 Identities=33% Similarity=0.576 Sum_probs=137.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|++|||||||++++.++.+. .+.+|.+.....+...+..+.+||+||++++...+..++++++++++|+|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 45799999999999999999999987764 56677777777788888999999999999999889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc-----------CCCceeEEEeeecc
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-----------TDREVCCYMISCKD 165 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~ 165 (184)
+++..++.....++..++......+.|+++++||+|+......++..+.++.... ....+++++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9999889888888888876655567999999999999766666777776654221 12456799999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030000 166 SINIDAVIDWLIKHS 180 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~ 180 (184)
|+|++++|+|+.+.+
T Consensus 176 ~~gv~e~~~~l~~~~ 190 (190)
T cd00879 176 RQGYGEAFRWLSQYL 190 (190)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=183.53 Aligned_cols=158 Identities=20% Similarity=0.323 Sum_probs=125.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|||||||++++..+.+...+.+|.+..+ ..+ ....+.+.+||+||++++...+..++++++++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999888777777766332 223 344477889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|++++.++.....|+..+.......++|+++++||+|+.+.... .+....+.. ....+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR----QWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999998888866555568999999999998653221 111111111 1125799999999999999999
Q ss_pred HHHHHh
Q 030000 175 WLIKHS 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
++.+.+
T Consensus 157 ~l~~~~ 162 (163)
T cd04136 157 DLVRQI 162 (163)
T ss_pred HHHHhc
Confidence 998765
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=174.91 Aligned_cols=159 Identities=24% Similarity=0.385 Sum_probs=133.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-|||+++|+.|+|||+|++++..+-|++..+.|+|..+. ++++..+++++|||+|+++|++..+.+++.++++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 489999999999999999999999999999999995554 3556779999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
||++...+|+-+..|+.++-.+.+ .++--++|+||+|+.+. .++.++++.+........++++||++.+|++.+|.
T Consensus 87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 999999999999999999876644 56777889999998654 33334444333334555689999999999999998
Q ss_pred HHHHHhh
Q 030000 175 WLIKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
.+.-.+.
T Consensus 163 ~~a~rli 169 (213)
T KOG0095|consen 163 DLACRLI 169 (213)
T ss_pred HHHHHHH
Confidence 8876553
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=187.73 Aligned_cols=160 Identities=24% Similarity=0.419 Sum_probs=127.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+||+++|.+|+|||||++++..+.+.. ..+|.+..+.......+.+.+||++|++.+...+..+++++|++|+|||+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN 79 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999999874 5778887766666677889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc-------------------c--CH---HHHHHHhCCC------
Q 030000 100 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA-------------------L--SK---QALVDQLGLE------ 149 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-------------------~--~~---~~~~~~~~~~------ 149 (184)
+++|..+..|+..+... ...++|+++|+||+|+.+. . .. ..+.+.....
T Consensus 80 ~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~ 158 (220)
T cd04126 80 VQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDED 158 (220)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccccc
Confidence 99999999888877654 3357999999999998651 0 11 1222222100
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.......++++|||++|.||+++|+.+++.+.
T Consensus 159 ~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 159 LSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00012357999999999999999999998765
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=182.33 Aligned_cols=156 Identities=23% Similarity=0.441 Sum_probs=127.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe----ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||+++++.+.+...+.+|.+....... ...+.+.+||+||++.+......++..+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888788888876655432 34588999999999999888888999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
|++++.++..+..|+..+..... ++|+++|+||+|+.+.....+..+.. .....+++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQITFH-----RKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHHHH-----HHcCCEEEEEeCCCCCChHHHHHH
Confidence 99999999999988888766543 89999999999997433222221111 123457999999999999999999
Q ss_pred HHHHhhh
Q 030000 176 LIKHSKT 182 (184)
Q Consensus 176 i~~~~~~ 182 (184)
+.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9988764
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=184.25 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=123.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|+|||||++++..+.+...+.+|.+..+. .++...+.+.+|||+|++++......+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 379999999999999999999999998888888875543 23445688999999999999999999999999999999
Q ss_pred eCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCcccc--------------cCHHHHHHHhCCCccCCCce-eEE
Q 030000 96 DAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEA--------------LSKQALVDQLGLESITDREV-CCY 159 (184)
Q Consensus 96 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~ 159 (184)
|++++++|+.+ ..|...+.... ++.|+++|+||+|+.+. ...++. +.+ ....+. +++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~-~~~----a~~~~~~~~~ 153 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQG-CAI----AKQLGAEIYL 153 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHH-HHH----HHHhCCCEEE
Confidence 99999999996 67777665432 57999999999998541 111111 111 111232 699
Q ss_pred EeeeccCCC-HHHHHHHHHHHhh
Q 030000 160 MISCKDSIN-IDAVIDWLIKHSK 181 (184)
Q Consensus 160 ~~Sa~~~~~-i~~l~~~i~~~~~ 181 (184)
+|||++|+| |+++|+.+.....
T Consensus 154 E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 154 ECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred ECccCcCCcCHHHHHHHHHHHHh
Confidence 999999995 9999999988543
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=184.75 Aligned_cols=158 Identities=21% Similarity=0.301 Sum_probs=127.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|+|||||++++..+.+...+.+|.+..... ++...+.+.+||+||++++...+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 3799999999999999999999999888877787755432 334457899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++..+..|+..+... ..++.|+++|+||+|+..... .++..+... ...++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFAD-----ENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 9999999999999998876443 235789999999999965432 222222221 12457999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999987754
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=181.62 Aligned_cols=157 Identities=18% Similarity=0.287 Sum_probs=125.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|+|||||++++.++.+...+.+|.+..+.. +....+.+.+||+||++++...+..++++++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 3799999999999999999999998877777777644322 3334467889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|+++..++.....|+..+.+.....+.|+++|+||+|+.+... ..+..+... ....+++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK-----SYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH-----HhCCeEEEecCCCCCCHHHHHH
Confidence 9999999999988888877665556899999999999865322 222212111 1234699999999999999999
Q ss_pred HHHHHh
Q 030000 175 WLIKHS 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998765
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=178.49 Aligned_cols=157 Identities=38% Similarity=0.714 Sum_probs=136.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
||+++|.+|||||||++++.++.+ ....+|.+.....+......+.+||+||++.+...+..+++++|++++|+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~ 79 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDR 79 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 689999999999999999998873 4567788888888888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 101 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
.++.....++..+.......+.|+++++||+|+......++..+.++........++++++||++|.|++++|++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 80 ERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 899998888888877655678999999999999877666677776665444456778999999999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=182.02 Aligned_cols=160 Identities=21% Similarity=0.364 Sum_probs=129.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee------------ecCEEEEEEEcCCccchhHhHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT------------KGNVTIKLWDLGGQRRFRTMWER 83 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~------------~~~~~~~~~d~~g~~~~~~~~~~ 83 (184)
..+||+++|++|||||||++++..+.+...+.+|.+..+.. +. ...+.+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999988888888755532 22 23478999999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEe
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++++|++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++..+... ..+.+++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD-----KYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH-----HcCCeEEEE
Confidence 999999999999999999999999998877655444678999999999996532 2222211111 112469999
Q ss_pred eeccCCCHHHHHHHHHHHhhh
Q 030000 162 SCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
||++|.|++++|+++.+.+.+
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999987654
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=181.86 Aligned_cols=158 Identities=19% Similarity=0.213 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++..+.+...+.+|.+..+. .+. ...+.+++||++|++++...+..+++++|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 69999999999999999999999998888898876554 333 334889999999999999988889999999999999
Q ss_pred CCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC---------cc-CCCceeEEEeeecc
Q 030000 97 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE---------SI-TDREVCCYMISCKD 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~Sa~~ 165 (184)
+++++++..+.. |...+... .+++|+++|+||+|+.......+........ .. ....+.++++||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999975 65555332 2579999999999986532211110000000 00 11235799999999
Q ss_pred CCCHHHHHHHHHHH
Q 030000 166 SINIDAVIDWLIKH 179 (184)
Q Consensus 166 ~~~i~~l~~~i~~~ 179 (184)
|.|++++|+.++..
T Consensus 160 g~~v~~~f~~~~~~ 173 (175)
T cd01874 160 QKGLKNVFDEAILA 173 (175)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999874
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=188.30 Aligned_cols=159 Identities=22% Similarity=0.374 Sum_probs=130.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe----ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|||||||+++++.+.+...+.+|.+....... ...+.+.+||++|++++...+..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56799999999999999999999999998888899886655432 34589999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|||++++.++..+..|+..+... ..+.|+++|+||+|+.......+..+ + .....++++++||++|.|++++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~~-~----~~~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-F----HRKKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHHH-H----HHhcCCEEEEcCCCCCCCHHHH
Confidence 999999999999999998887654 25799999999999864322111111 1 1123457999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+.+
T Consensus 164 f~~l~~~~~~ 173 (219)
T PLN03071 164 FLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHc
Confidence 9999988754
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=187.78 Aligned_cols=158 Identities=21% Similarity=0.253 Sum_probs=125.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..+||+++|++|+|||||+.++..+.|...+.+|.+..+.. +....+.+.+|||+|+++|......+++++|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 46899999999999999999999999998888998755542 334568899999999999999999999999999999
Q ss_pred EeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCcccc--------------cCHHHHHHHhCCCccCCCce-eE
Q 030000 95 VDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEA--------------LSKQALVDQLGLESITDREV-CC 158 (184)
Q Consensus 95 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~ 158 (184)
||++++.+|... ..|+..+.... ++.|+++|+||+|+.+. ...++. +.+ ....++ .+
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~-~~~----a~~~~~~~~ 164 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQG-CAL----AKQLGAEVY 164 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHH-HHH----HHHcCCCEE
Confidence 999999999984 67777665432 47899999999998542 111111 111 112233 58
Q ss_pred EEeeeccCC-CHHHHHHHHHHHhhh
Q 030000 159 YMISCKDSI-NIDAVIDWLIKHSKT 182 (184)
Q Consensus 159 ~~~Sa~~~~-~i~~l~~~i~~~~~~ 182 (184)
++|||++|+ ||+++|+.+...+.+
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHHHHHH
Confidence 999999998 899999999877644
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=182.89 Aligned_cols=158 Identities=23% Similarity=0.364 Sum_probs=126.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
||+++|++|||||||++++..+.+...+.+|.+..+.. +......+++||+||++++...+..+++++|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988888998865532 23345789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH---HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
+++++++.....|+..+.+.......|+++|+||+|+.+.... ++....+. .....+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA----AEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999998888766544456789999999998654221 11111111 1112468999999999999999
Q ss_pred HHHHHHhhh
Q 030000 174 DWLIKHSKT 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999987643
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=179.13 Aligned_cols=158 Identities=34% Similarity=0.664 Sum_probs=129.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC------CCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGG------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+|+++|++|+|||||++++.... ....+.+|.+.....+...+..+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 58999999999999999997532 233456788877777888899999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc--cCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES--ITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+.+++++.....++..+.......++|+++++||+|+.......+..+.+.... .....++++++||++|+|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888877655556899999999999977655555555544321 2234568999999999999999
Q ss_pred HHHHHH
Q 030000 173 IDWLIK 178 (184)
Q Consensus 173 ~~~i~~ 178 (184)
++||.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999975
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=182.60 Aligned_cols=160 Identities=25% Similarity=0.437 Sum_probs=124.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|+.|+|||||++++..+.+...+.+|.+..+. .+. ...+.+.+||++|++++...+..+++++|++++|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899986553 343 34478999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc---CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|++++.++..+..|+..+.... ....| ++|+||+|+.... ......+.. .......+.+++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~-~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQA-RKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHH-HHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999888775542 24566 5789999985321 111111110 0011122357999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+..
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987654
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=178.81 Aligned_cols=157 Identities=23% Similarity=0.403 Sum_probs=126.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.+...+.+|.+..+. .+. ...+.+.+||+||++++...+..++++++++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988877888875443 232 33478999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|.++++++..+..|+..+... .....|+++|+||+|+.+... .++..+... ..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLAD-----QLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 999999999999888876443 335789999999999965432 122111111 112369999999999999999
Q ss_pred HHHHHHhhh
Q 030000 174 DWLIKHSKT 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++.+.+..
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999988765
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=179.40 Aligned_cols=157 Identities=20% Similarity=0.330 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||+++++++.+...+.+|.+..+. .+ ....+.+++||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888888886543 23 344688999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCC----CCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 96 DAADRDSVPIARSELHELLMKPSL----SGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
|++++.++.....|+..+.+.... .+.|+++|+||+|+.+.. ..++...... ....+++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-----SKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-----HcCCeEEEEECCCCCCH
Confidence 999999999999988888665442 579999999999996422 2222222111 12246999999999999
Q ss_pred HHHHHHHHHHhh
Q 030000 170 DAVIDWLIKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
+++++++.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=179.90 Aligned_cols=158 Identities=22% Similarity=0.332 Sum_probs=125.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|||||||++++.++.+...+.+|.+..+. . +....+.+.+||+||++++...+..++++++++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999998887777676653322 2 33345788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+++++++.....|...+.......+.|+++++||+|+.... ..+...+.... ...+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-----WGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH-----cCCEEEEeecCCCCCHHHHHH
Confidence 99999999999888877665555679999999999986532 22222111111 124799999999999999999
Q ss_pred HHHHHhhh
Q 030000 175 WLIKHSKT 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99988764
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=177.03 Aligned_cols=157 Identities=28% Similarity=0.558 Sum_probs=128.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEee-cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+|+++|++|||||||++++.++.+.. ..+|.+.....+.. ..+.+.+||+||+..+...+..++.++|++++|+|+.+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~ 79 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSD 79 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc
Confidence 58999999999999999999888753 46777766655553 45789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccC-CCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 100 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT-DREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
+.++.....++..++......+.|+++++||+|+......+++...+...... ...++++++||++|+|+++++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 80 EARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 88888888888888765544689999999999997655556666555433222 24567999999999999999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=169.10 Aligned_cols=156 Identities=25% Similarity=0.466 Sum_probs=135.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---Ee-ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+|++++|+..+|||||+.++.+..|......|.|+.+.. ++ .+.+++++|||+|+++++...-.++++++++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 4799999999999999999999999999999999977654 22 3458899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-----CHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
||+++.++|.....|...+. .....+.|+|+++||||+.++. ....+.+.++. .+|++||+.+.|+
T Consensus 101 yDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf--------efFEtSaK~NinV 171 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF--------EFFETSAKENINV 171 (193)
T ss_pred EecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh--------HHhhhcccccccH
Confidence 99999999999999988774 4466899999999999996643 23556666665 4999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030000 170 DAVIDWLIKHSKTA 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
.++|+.+.+.++.+
T Consensus 172 k~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 172 KQVFERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
|
|
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=179.02 Aligned_cols=155 Identities=23% Similarity=0.365 Sum_probs=124.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++..+.+...+.+|.+.... .+.. ..+.+.+||++|++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888886543 3333 3478899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|+++++++..+..|+..+... ...+.|+++|+||.|+...... .+....+.. ....+++++||++|.|++++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAK----EYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999988877544 2357999999999998654322 111111111 1124689999999999999999
Q ss_pred HHHHH
Q 030000 175 WLIKH 179 (184)
Q Consensus 175 ~i~~~ 179 (184)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=181.95 Aligned_cols=158 Identities=22% Similarity=0.307 Sum_probs=126.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|+|||||++++.++.+.....+|.+..+.. +....+.+.+||+||++++...+..+++++|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888877766776643332 3344477899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|++++.++.....|+..+.+.....+.|+++++||+|+..... .++..+... ...++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-----KLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-----HcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999999888877655556899999999999865432 222111111 123479999999999999999
Q ss_pred HHHHHHhh
Q 030000 174 DWLIKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+++.+.++
T Consensus 157 ~~l~~~~~ 164 (164)
T cd04145 157 HDLVRVIR 164 (164)
T ss_pred HHHHHhhC
Confidence 99988763
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=179.96 Aligned_cols=158 Identities=15% Similarity=0.289 Sum_probs=125.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
++||+++|.+|+|||||++++..+.+...+.+|.+..+ ..+ +...+.+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999998877777765222 223 344567889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH-HHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|++++.++.....|+..+.......++|+++|+||+|+....... .....+.. ....+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE----EWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH----HhCCEEEEecCCCCCCHHHHHH
Confidence 999999999999988887665545689999999999986532211 11111111 1124789999999999999999
Q ss_pred HHHHHh
Q 030000 175 WLIKHS 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
++.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998765
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=179.98 Aligned_cols=159 Identities=20% Similarity=0.251 Sum_probs=120.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|||||||+.++..+.+...+.+|.+..+. .++...+.+.+|||+|++++...+..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 379999999999999999999999998888888764432 23445588999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCC--------Ccc-CCCceeEEEeeec
Q 030000 96 DAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGL--------ESI-TDREVCCYMISCK 164 (184)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~--------~~~-~~~~~~~~~~Sa~ 164 (184)
|++++++|..+.. |+..+... .++.|+++|+||+|+.+... .+...+.... ... .....++++|||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999864 55544332 25799999999999854221 1111110000 000 0112479999999
Q ss_pred cCCCHHHHHHHHHHH
Q 030000 165 DSINIDAVIDWLIKH 179 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~ 179 (184)
+|+|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=177.02 Aligned_cols=161 Identities=33% Similarity=0.647 Sum_probs=137.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|++|||||||++++.+..+. ...+|.+.....+...+..+.+||+||+..+...+..++++++++++|+|
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D 90 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVID 90 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEe
Confidence 45799999999999999999999876654 35677787777777788999999999999988888899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
+.+..++.....++...+......++|+++++||+|+.+....+++.+.++......+.++++++||++|+|++++++||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 91 SADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 99888888888887777665555679999999999997776677777777766666666778999999999999999999
Q ss_pred HH
Q 030000 177 IK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 171 ~~ 172 (173)
T cd04155 171 CK 172 (173)
T ss_pred hc
Confidence 75
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=174.87 Aligned_cols=157 Identities=71% Similarity=1.180 Sum_probs=135.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD 101 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 101 (184)
|+++|++|||||||++++.+..+.....+|.+.....+......+.+||+||++.+...+..+++.+|++++|+|+++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 78999999999999999999999888889999888888778899999999999999999999999999999999999888
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 102 SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
++.....++..+.......++|+++++||+|+.+.....+..+.+..........+++++|+++|.|++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88877777777766555568999999999998776655566666655444455678999999999999999999975
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=180.51 Aligned_cols=155 Identities=25% Similarity=0.415 Sum_probs=134.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.-|||+++|++++|||-|+.++..++|.....+|+|+.+.+ ++.+.++.+||||+||++|+.....+++.+.++++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 45999999999999999999999999999999999977765 55677999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc-----cCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA-----LSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|||++...+|++...|+.++..+.. .++++++|+||+||... ++.+.+.+..++ .++++||+++.|
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l--------~f~EtSAl~~tN 163 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGL--------FFLETSALDATN 163 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhHhHHHhcCc--------eEEEeccccccc
Confidence 9999999999999999999977655 68999999999999652 223334443333 599999999999
Q ss_pred HHHHHHHHHHHhh
Q 030000 169 IDAVIDWLIKHSK 181 (184)
Q Consensus 169 i~~l~~~i~~~~~ 181 (184)
+++.|+.+...+-
T Consensus 164 Ve~aF~~~l~~I~ 176 (222)
T KOG0087|consen 164 VEKAFERVLTEIY 176 (222)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877653
|
|
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=177.66 Aligned_cols=158 Identities=26% Similarity=0.417 Sum_probs=128.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|+|||||++++.++.+...+.+|.+..+. .+. ...+.+.+||+||++++...+..+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 589999999999999999999999998888888875443 333 3447899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+++++++..+..|+..+... ...+.|+++++||+|+.+.. ..++..+... ....+++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIKFLETSAKANINVEEA 156 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999888877554 33679999999999997532 2222222221 12347999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+..
T Consensus 157 ~~~i~~~~~~ 166 (167)
T cd01867 157 FFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHh
Confidence 9999998754
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=183.52 Aligned_cols=158 Identities=18% Similarity=0.272 Sum_probs=124.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
||+++|.+|+|||||++++..+.+...+.+|.+..+.. +....+.+.+||+||++++...+..+++++|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999998887777877744322 334456799999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCC--CCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 98 ADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
++..++..+..|+..+..... ..++|+++|+||+|+..... ..+..+.. ...+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALA-----RRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEecCCCCCCHHHHH
Confidence 999999999988877754332 35789999999999864322 11111111 1123469999999999999999
Q ss_pred HHHHHHhhhc
Q 030000 174 DWLIKHSKTA 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
+++.+.+..+
T Consensus 156 ~~l~~~l~~~ 165 (190)
T cd04144 156 YTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHh
Confidence 9999887643
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=176.10 Aligned_cols=157 Identities=25% Similarity=0.392 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++..+.+.....++.+..... ++...+.+.+||++|++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999998887777766544322 3445678999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
|++++.++.....|+..+... .++.|+++++||+|+.... ..+..+ +. ....++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFN-FA----EKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999888888777543 2478999999999984321 111111 11 112357999999999999999999
Q ss_pred HHHHhhhcC
Q 030000 176 LIKHSKTAK 184 (184)
Q Consensus 176 i~~~~~~~~ 184 (184)
+.+.+.+.|
T Consensus 153 l~~~~~~~~ 161 (161)
T cd04124 153 AIKLAVSYK 161 (161)
T ss_pred HHHHHHhcC
Confidence 999887765
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-32 Score=176.66 Aligned_cols=158 Identities=25% Similarity=0.420 Sum_probs=126.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||++++.++.+...+.+|.+.... .+. ...+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 479999999999999999999998887777777774433 333 3357899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+++++++..+..|+..+.... ..+.|+++++||+|+.+.... ++...... ...++++++||++|+|+.++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCCcCHHHH
Confidence 99999999999999888775442 357899999999998654321 22222111 12347999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=183.96 Aligned_cols=160 Identities=24% Similarity=0.383 Sum_probs=128.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee---ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+||+++|++|+|||||++++.++.+...+.+|.+..... +. ...+.+++||+||++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 4899999999999999999999999887777887755432 32 234789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|||++++.++..+..|+..+.........|+++++||+|+.+.... .+..+.+. ...+.+++++||++|+|++++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sak~g~~v~e~ 157 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA----KDLGMKYIETSARTGDNVEEA 157 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH----HHhCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999988876555456889999999998653221 11111111 112257999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|++|.+.+.+
T Consensus 158 f~~l~~~~~~ 167 (211)
T cd04111 158 FELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=181.67 Aligned_cols=161 Identities=22% Similarity=0.267 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.||+++|++|+|||||++++..+.+...+.+|.+..+.. ++...+.+++||++|++++...+..++++++++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 389999999999999999999999988778887755432 33345789999999999998888889999999999999
Q ss_pred CCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhC---------CCcc-CCCceeEEEeeecc
Q 030000 97 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG---------LESI-TDREVCCYMISCKD 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~Sa~~ 165 (184)
++++.+|..... |+..+... ..+.|+++|+||+|+.......+...... .... ....++++++||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999998864 66555433 25799999999999965433221111110 0000 11235799999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
|.|++++|+++.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988764
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=183.32 Aligned_cols=162 Identities=18% Similarity=0.268 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+|+|++|+|||||+.++..+.+...+.+|.+..+. .++...+.+.+|||+|++.|......+++++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999999888899886554 234456889999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHH--------HhCCCccCCCc-eeEEEeeeccC
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVD--------QLGLESITDRE-VCCYMISCKDS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~Sa~~~ 166 (184)
++++++|+.+..+|...+... .+++|+++|+||+|+.+.... +...+ ..+.......+ .+|++|||+++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 999999999965444443332 367999999999998653110 10000 00000011123 37999999999
Q ss_pred CC-HHHHHHHHHHHhhh
Q 030000 167 IN-IDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~-i~~l~~~i~~~~~~ 182 (184)
++ |+++|+.+......
T Consensus 161 ~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 161 ERSVRDVFHVATVASLG 177 (222)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 85 99999998876543
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=176.97 Aligned_cols=152 Identities=22% Similarity=0.326 Sum_probs=115.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+||+++|+.|+|||||+.++..+.+.....++.+.....+... .+.+.+||++|++. ..+++++|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 4899999999999999999998888766656555433444444 47799999999975 2456789999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 98 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+++.+|+....|+..+.......++|+++|+||.|+... ... .+..+.+.. ....+.+++|||++|.||+++|+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~---~~~~~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA---DMKRCSYYETCATYGLNVERVFQ 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH---HhCCCcEEEEecCCCCCHHHHHH
Confidence 999999999999888876655567999999999998431 111 111111111 11235799999999999999999
Q ss_pred HHHHH
Q 030000 175 WLIKH 179 (184)
Q Consensus 175 ~i~~~ 179 (184)
.+.+.
T Consensus 153 ~~~~~ 157 (158)
T cd04103 153 EAAQK 157 (158)
T ss_pred HHHhh
Confidence 99865
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=177.02 Aligned_cols=160 Identities=25% Similarity=0.394 Sum_probs=127.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..+||+++|++|+|||||++++..+.+...+.+|.+.... . ++...+.+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 35689999999999999999999999988877788775543 2 3445578899999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|+++++++..+..|...+..... ..++|+++++||+|+.... ..++..+.... ....+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCC
Confidence 99999999999999888887755432 3578999999999986422 22333222211 1123689999999999
Q ss_pred HHHHHHHHHHHh
Q 030000 169 IDAVIDWLIKHS 180 (184)
Q Consensus 169 i~~l~~~i~~~~ 180 (184)
+.++|+++.+.+
T Consensus 159 v~~~~~~~~~~~ 170 (170)
T cd04116 159 VAAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=181.99 Aligned_cols=158 Identities=22% Similarity=0.330 Sum_probs=126.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEee---cCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|+|||||++++.++.+...+.+|.+.... .+.. ..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999998888889885543 2332 358899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCC--CCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+++++++..+..|+..+..... ..+.|+++|+||+|+..... .++.. .+.. ....+++++||++|+|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~-~~~~----~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHA-RFAQ----ANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHH-HHHH----HcCCEEEEEECCCCCCHH
Confidence 999999999999988887765432 24578999999999964321 11111 1111 112468999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|+++.+.+..
T Consensus 156 ~lf~~l~~~l~~ 167 (215)
T cd04109 156 LLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=174.76 Aligned_cols=157 Identities=26% Similarity=0.390 Sum_probs=124.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|+|||||++++..+.+...+.+|.+.. ...+...+ +.+.+||+||++++...+..+++++|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 5899999999999999999999888877777777643 33444444 6889999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++..+..|+..+... ...++|+++|+||+|+.+... .+...+.... .....++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 83 YDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEK----NGMLAVLETSAKESQNVEEA 157 (165)
T ss_pred EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHH----cCCcEEEEEECCCCCCHHHH
Confidence 9999999999998888877543 346799999999999975432 1221111111 11235899999999999999
Q ss_pred HHHHHHHh
Q 030000 173 IDWLIKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
++++.+.+
T Consensus 158 ~~~l~~~l 165 (165)
T cd01864 158 FLLMATEL 165 (165)
T ss_pred HHHHHHhC
Confidence 99998753
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=167.75 Aligned_cols=158 Identities=22% Similarity=0.346 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+|++++|+.|+|||+|+.++....+......|+|+.+.. ++ .+.++++||||+||++|++....+++.+.+.++||
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVY 89 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 89 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEE
Confidence 899999999999999999999999999999999977654 33 45588999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
|+++.++|..+..|+..... ...+++-+++++||.|+.+..+..- .+ .......++..++++|+++|+|++|.|-.
T Consensus 90 D~TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R~Vtf-lE--As~FaqEnel~flETSa~TGeNVEEaFl~ 165 (214)
T KOG0086|consen 90 DITSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPEREVTF-LE--ASRFAQENELMFLETSALTGENVEEAFLK 165 (214)
T ss_pred eccchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhhhhhH-HH--HHhhhcccceeeeeecccccccHHHHHHH
Confidence 99999999999999998744 4457888999999999966543311 11 11122233446899999999999999977
Q ss_pred HHHHhh
Q 030000 176 LIKHSK 181 (184)
Q Consensus 176 i~~~~~ 181 (184)
....+.
T Consensus 166 c~~tIl 171 (214)
T KOG0086|consen 166 CARTIL 171 (214)
T ss_pred HHHHHH
Confidence 666554
|
|
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=168.39 Aligned_cols=154 Identities=28% Similarity=0.489 Sum_probs=131.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-++.+|+|++|+|||+|+.++..+.|..++..|+|.++.. +++..++++|||++|+++|+.+...+++..+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 3678899999999999999999999999999999966543 556679999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-----CHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
||.++.+||.+..+|+.++.+... .+|-++|+||.|..+.. +...+....+ +.+|++|+++++|+
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncd--sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg--------ie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCD--SVPKVLVGNKNDDPERRVVDTEDARAFALQMG--------IELFETSAKENENV 157 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCc--cccceecccCCCCccceeeehHHHHHHHHhcC--------chheehhhhhcccc
Confidence 999999999999999999966544 78999999999987632 2233333333 35899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030000 170 DAVIDWLIKHSKT 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+.+|.-|.+.+.+
T Consensus 158 E~mF~cit~qvl~ 170 (198)
T KOG0079|consen 158 EAMFHCITKQVLQ 170 (198)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999887654
|
|
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=180.80 Aligned_cols=158 Identities=25% Similarity=0.441 Sum_probs=127.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|+|||||++++.++.+...+.+|.+..+. .+. ...+.+.+||+||++.+...+..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 4689999999999999999999999888778888875543 333 334678999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|+++++++..+..|+..+... ....|+++|+||+|+.+... .++..+... ....+++++||++|.||++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAG-----QMGISLFETSAKENINVEE 157 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECCCCcCHHH
Confidence 99999999999999888877543 25789999999999875432 222222211 1125799999999999999
Q ss_pred HHHHHHHHhhh
Q 030000 172 VIDWLIKHSKT 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+++.+.+..
T Consensus 158 lf~~l~~~~~~ 168 (199)
T cd04110 158 MFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=178.86 Aligned_cols=156 Identities=21% Similarity=0.296 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||+++++++.+...+.+|.+..+.. .....+.+.+||+||++++......+++.++++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 799999999999999999999999887777777644432 33455789999999999999888889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcC--CCCCCCcEEEEEeCCCcccccCHH-HHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 97 AADRDSVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
++++.++.....|+..+... ....++|+++|+||+|+.+..... +...... .....+++++||++|+|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACA----TEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHH----HHhCCcEEEeecCCCCCHHHHH
Confidence 99999999988887655332 223579999999999996532211 1111111 1123468999999999999999
Q ss_pred HHHHHH
Q 030000 174 DWLIKH 179 (184)
Q Consensus 174 ~~i~~~ 179 (184)
++|.+.
T Consensus 158 ~~l~~~ 163 (165)
T cd04140 158 QELLNL 163 (165)
T ss_pred HHHHhc
Confidence 999864
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=160.49 Aligned_cols=173 Identities=35% Similarity=0.626 Sum_probs=159.9
Q ss_pred HHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
..+.+++.+++++|+.+|..++||||++..+.-+.. ....+|.|++...+..++..+++||.+|+...+..|..|+...
T Consensus 7 k~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gt 85 (180)
T KOG0071|consen 7 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGT 85 (180)
T ss_pred HHHHHHhCcccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCC
Confidence 445556788999999999999999999999975543 4667899999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
.++|+|+|+.+.+.++..+..+..++........|+++..||.|+.....++++.+.+.+...+.+.+.+.++|+.+|+|
T Consensus 86 qglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdg 165 (180)
T KOG0071|consen 86 QGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDG 165 (180)
T ss_pred ceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchh
Confidence 99999999999999999999999999998888999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
..+-+.|+...++.
T Consensus 166 L~eglswlsnn~~~ 179 (180)
T KOG0071|consen 166 LKEGLSWLSNNLKE 179 (180)
T ss_pred HHHHHHHHHhhccC
Confidence 99999999987653
|
|
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=175.96 Aligned_cols=159 Identities=28% Similarity=0.451 Sum_probs=126.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchh-HhHHhhccCCCEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFR-TMWERYCRGVSAILY 93 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~i~ 93 (184)
.+||+++|++|+|||||+++++.+.+...+.+|.+.... .+ ....+.+.+||+||++++. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 479999999999999999999999888777777775443 23 3445889999999999887 467888999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeecc---CCCH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKD---SINI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i 169 (184)
|+|++++.++.....|+..+.......++|+++|+||+|+...... .+..+.+.. ....+++++||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD----AHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH----HcCCcEEEEeccCCcCCCCH
Confidence 9999999999999998887766655568999999999998654321 122222211 1235799999999 8999
Q ss_pred HHHHHHHHHHhh
Q 030000 170 DAVIDWLIKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
.++|..+.+.++
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=178.00 Aligned_cols=157 Identities=20% Similarity=0.281 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEe---ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT---KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.+...+.+|.+..+. .+. ...+.+.+|||||++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 48999999999999999999999998888888775543 233 33578999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCccccc------CHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 96 DAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEAL------SKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++.+++.... |+..+... .++.|+++|+||+|+.... ...+..+.... ....+++++||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK----QGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHH----cCCcEEEEccCCCCCC
Confidence 9999999998865 55444322 2579999999999986532 11111111110 1112689999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
++++|+.+.+.+..
T Consensus 155 v~~~f~~l~~~~~~ 168 (187)
T cd04132 155 VEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988765
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=167.85 Aligned_cols=156 Identities=26% Similarity=0.429 Sum_probs=132.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee---ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
-+++++|+|++-+|||||+..+..+++..-..||+|.++.. ++ +..+++++|||+||++|++....++++.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 46899999999999999999999999999999999976643 22 44588999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCccccc-----CHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+|||++++++|+....|+.+...... ..++-+.+|++|+|+.... +.+++....+ ..++++|+++|
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg--------M~FVETSak~g 158 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG--------MAFVETSAKNG 158 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcC--------ceEEEecccCC
Confidence 99999999999999999998866655 4456677899999997532 2344444444 45999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030000 167 INIDAVIDWLIKHSK 181 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~ 181 (184)
.|+++.|..+.+.+.
T Consensus 159 ~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 159 CNVEEAFDMLAQEIF 173 (213)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999999888764
|
|
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=174.62 Aligned_cols=155 Identities=22% Similarity=0.336 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.+.....++.+..+. .++...+.+++||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777777764443 23344578999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|++++.++..+..|+..+... ..+++|+++++||+|+..... .++....... ..++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQE-----NGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHHH
Confidence 999999999998888766433 346899999999999965322 2222222211 12579999999999999999
Q ss_pred HHHHHHh
Q 030000 174 DWLIKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++.+.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=172.78 Aligned_cols=153 Identities=23% Similarity=0.435 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee----ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+||+++|++|+|||||++++..+.+...+.+|.+..+.. +. ...+.+.+||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998887778888765532 22 345889999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|+++++++..+..|...+... ..++|+++|+||+|+..... .++..+.... ..++++++|+++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKR-----LQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHH-----cCCeEEEEECCCCCCHHH
Confidence 99999999999998888776432 25799999999999865332 2222221111 123699999999999999
Q ss_pred HHHHHHHH
Q 030000 172 VIDWLIKH 179 (184)
Q Consensus 172 l~~~i~~~ 179 (184)
+++++.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999865
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=177.26 Aligned_cols=158 Identities=27% Similarity=0.436 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|||||||++++..+.+.. .+.+|.+..+.. +....+.+++||+||++++...+..+++++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888753 556676644432 334457899999999999999899999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+++..++.....|+..+... ...++|+++|+||+|+.... ..++.. .+.. ....+++++||++|+|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~-~l~~----~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGE-RLAK----EYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHH-HHHH----HcCCeEEEEeCCCCCCHHHH
Confidence 9999999999998888777554 33578999999999996432 112211 1111 11247999999999999999
Q ss_pred HHHHHHHhhhc
Q 030000 173 IDWLIKHSKTA 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
|++|.+.+...
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999887654
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=177.53 Aligned_cols=151 Identities=22% Similarity=0.419 Sum_probs=123.3
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC
Q 030000 25 IGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 25 ~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
+|.+|||||||+++++.+.+...+.+|.+...... +...+.+.+||++|++++..++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 59999999999999999988888888988665432 23468899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 101 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
.++..+..|+..+.+.. .++|+++|+||+|+.......+..+ + .....+.+++|||++|.||.++|+++.+.+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~-~----~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSIT-F----HRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHH-H----HHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998888776543 5799999999999854321111111 1 122356799999999999999999999877
Q ss_pred hh
Q 030000 181 KT 182 (184)
Q Consensus 181 ~~ 182 (184)
..
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 54
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-31 Score=176.17 Aligned_cols=159 Identities=23% Similarity=0.393 Sum_probs=125.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.+...+.+|.+..+. .+ ....+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988777788774443 23 334578899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|+++++++..+..|+..+.... ..+.|+++++||+|+.+.... .+....+. ....++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999888775443 246899999999998753321 11111111 11233699999999999999999
Q ss_pred HHHHHhhhc
Q 030000 175 WLIKHSKTA 183 (184)
Q Consensus 175 ~i~~~~~~~ 183 (184)
++.+.+.++
T Consensus 156 ~l~~~~~~~ 164 (188)
T cd04125 156 LLVKLIIKR 164 (188)
T ss_pred HHHHHHHHH
Confidence 999887653
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-31 Score=181.26 Aligned_cols=157 Identities=19% Similarity=0.324 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccce-eEEE--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF-NMRK--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~-~~~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||+++++.+.+...+.+|.+. .... +....+.+.+|||+|++.+......++.++|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998777787762 2223 33445889999999999998888888899999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcC--------CCCCCCcEEEEEeCCCccc--ccCHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 97 AADRDSVPIARSELHELLMK--------PSLSGIPLLVLGNKIDKSE--ALSKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+++.++|+.+..|+..+... ....++|+++|+||+|+.. ....++..+.... ...+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 99999999999888877543 1235799999999999964 2233444444332 12457999999999
Q ss_pred CCHHHHHHHHHHHh
Q 030000 167 INIDAVIDWLIKHS 180 (184)
Q Consensus 167 ~~i~~l~~~i~~~~ 180 (184)
.|++++|++|.+..
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999865
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.6e-31 Score=171.56 Aligned_cols=156 Identities=22% Similarity=0.362 Sum_probs=124.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||++++.++.+...+.+|.+..+. .+... .+.+.+||+||++++...+..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999999888777777775443 33333 36789999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++..+..|+..+.... ..++|+++|+||+|+.... ..++...... ....+++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 99999999999998888765543 3468999999999986532 2222222221 12357999999999999999
Q ss_pred HHHHHHHh
Q 030000 173 IDWLIKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
++++.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-31 Score=172.50 Aligned_cols=156 Identities=18% Similarity=0.217 Sum_probs=123.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
++.+||+++|.+|+|||||+++++++.+. ..+.+|.+..+. .+ ....+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999987 778888775432 23 34447889999999999988888889999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-----CHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++|+|++++.++.....|+..+.. ..++|+++|+||+|+.+.. ..+++.+.++.. .++++||++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccC
Confidence 999999999888888777765422 2479999999999986432 223333333221 3589999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|++++|+.+.+.+..
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999987754
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-31 Score=172.22 Aligned_cols=155 Identities=22% Similarity=0.363 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++++..+.....++.+..+ ..+.. ..+.+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988777777776443 33333 3467999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|++++.++.....|+..+..... .+.|+++++||+|+.+.. ..++...... ....+++++|+++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEEeCCCCCCHHHHH
Confidence 99999999999988887765433 379999999999995432 2222222211 123579999999999999999
Q ss_pred HHHHHHh
Q 030000 174 DWLIKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++.+.+
T Consensus 155 ~~i~~~l 161 (161)
T cd01861 155 RKIASAL 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-31 Score=180.99 Aligned_cols=160 Identities=21% Similarity=0.331 Sum_probs=128.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|+|||||++++.++.+...+.+|.+..+. .+. ...+.+.+||+||++++...+..++++++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 4589999999999999999999999888777788876543 333 344789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|+|++++.++..+..|+..+.... ..++|+++|+||+|+...... .+....+.. ...++++++||++|.|++++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~----~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAE----KEGLSFLETSALEATNVEKA 165 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHH
Confidence 999999999999998887765442 357999999999998653322 122222211 12457999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+.+
T Consensus 166 f~~l~~~i~~ 175 (216)
T PLN03110 166 FQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHH
Confidence 9999887754
|
|
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=170.75 Aligned_cols=156 Identities=26% Similarity=0.411 Sum_probs=125.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EE--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RK--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
++||+++|++|+|||||++++.++.+.....+|.+..+ .. ++.....+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999988776677766332 22 344557899999999999999899999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+++++++.....|+..+..... .++|+++++||+|+.... ..++..+.... ...+++++||++|.|+.++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADE-----NGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHH
Confidence 999999999999988887765543 679999999999987422 23222222211 1247999999999999999
Q ss_pred HHHHHHHh
Q 030000 173 IDWLIKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
++++.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999876
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-31 Score=173.62 Aligned_cols=158 Identities=20% Similarity=0.295 Sum_probs=125.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
++||+++|.+|||||||++++.++.+...+.+|.+..+. . +....+.+.+||+||++++...+..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 479999999999999999999999887777777764432 2 3334478899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|.++++++.....|...+.......+.|+++++||.|+.+.... ++..... . .....+++++||++|.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~-~---~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLS-Q---QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHH-H---HcCCceEEEeeCCCCCCHHHHH
Confidence 99999999999988887766555568999999999998654321 1111111 0 0112579999999999999999
Q ss_pred HHHHHHh
Q 030000 174 DWLIKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++...+
T Consensus 157 ~~i~~~~ 163 (168)
T cd04177 157 IDLVRQI 163 (168)
T ss_pred HHHHHHH
Confidence 9999765
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=170.96 Aligned_cols=158 Identities=20% Similarity=0.292 Sum_probs=126.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|+|||||++++.++.+.....+|.+.... . +......+.+||+||++++......+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 489999999999999999999998887777777664432 2 333447899999999999999889999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++..+..|+..+.... .++.|+++|+||.|+.+.. ..++...... ....+++++||++|+|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999888775543 3679999999999997432 2222222221 12346999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999988754
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=169.98 Aligned_cols=156 Identities=26% Similarity=0.438 Sum_probs=125.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+.....++.+..+. . +....+.+.+||+||++.+......+++++|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999988887666777765443 2 2334578999999999999988899999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|++++.++.....|+..+.......+.|+++++||+|+.... ..++..+... ...++++++|+++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEEEEEecCCCCCHHHHHH
Confidence 999999999998888877666666789999999999997432 2322222221 1245799999999999999999
Q ss_pred HHHHHh
Q 030000 175 WLIKHS 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
++.+.+
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 998763
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=171.04 Aligned_cols=159 Identities=26% Similarity=0.440 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.+..+.....+|.+..+. .+ ....+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777777765432 23 334477889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCC---CCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 96 DAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
|+.++.++.....|...+..... ..++|+++|+||+|+..+. ..+........ ....+++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS----NGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH----cCCceEEEEECCCCCCHH
Confidence 99999998888777766544332 3479999999999997422 23332222211 112479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 157 ~l~~~i~~~~~~ 168 (172)
T cd01862 157 QAFETIARKALE 168 (172)
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=169.61 Aligned_cols=158 Identities=25% Similarity=0.454 Sum_probs=126.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.+..+.....++.+.... .+... .+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777777775443 33333 378999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|++++.+++.+..|+..+..... +++|+++++||+|+.+.. ..+...+... ...++++++|+++|+|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAE-----EHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHH
Confidence 99999999998888777655433 589999999999987632 2222222211 123469999999999999999
Q ss_pred HHHHHHhhhc
Q 030000 174 DWLIKHSKTA 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
++|.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999987653
|
Rab GTPases are implicated in vesicle trafficking. |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-31 Score=171.62 Aligned_cols=155 Identities=29% Similarity=0.502 Sum_probs=128.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--E--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
||+++|++|||||||++++.++.+...+.+|.+..... + +...+.+.+||++|++++.......++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999998888888655543 2 3355789999999999999989999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
.++++++..+..|+..+..... .+.|+++++||.|+.+.. ..++..+... ..+.+++++|++++.||.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-----ELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-----HTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-----HhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999999888766544 568999999999998632 2222222221 1124799999999999999999
Q ss_pred HHHHHhh
Q 030000 175 WLIKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
.+.+.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=170.23 Aligned_cols=155 Identities=16% Similarity=0.303 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccceeEEE--E--e-ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG--GYSEDMIPTVGFNMRK--V--T-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~t~~~~~~~--~--~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+||+++|++|||||||++++..+ .+...+.+|.+..... + . ...+.+.+||+||++.+...+..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 5677777888755432 2 2 34588999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH-HHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA-LVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|+|+++++++.....|+..+.... .+.|+++|+||+|+.+...... ..+.+. .....+++++||++|.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999998888887765442 5699999999999965432221 111111 11124699999999999999
Q ss_pred HHHHHHHHh
Q 030000 172 VIDWLIKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998865
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=176.65 Aligned_cols=160 Identities=20% Similarity=0.259 Sum_probs=119.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEE--eecCEEEEEEEcCCccchh--------HhHHhhccC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKV--TKGNVTIKLWDLGGQRRFR--------TMWERYCRG 87 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~--~~~~~~~~~~d~~g~~~~~--------~~~~~~~~~ 87 (184)
+||+|+|.+|+|||||++++.++.+...+.+|.+... ..+ ....+.+.+|||||...+. ......+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999998877777776332 223 3344788999999965431 112345789
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCC--CCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeee
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|++++|||++++++++....|+..+.... ...++|+++|+||+|+.... ..++..+... ....++++++||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCcEEEecC
Confidence 999999999999999999988888776543 24679999999999996532 1222111111 112457999999
Q ss_pred ccCCCHHHHHHHHHHHhhhc
Q 030000 164 KDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~~ 183 (184)
++|.|++++|+.+.+.+-.+
T Consensus 157 k~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 157 KYNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCCHHHHHHHHHHHhhcc
Confidence 99999999999999876543
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=169.48 Aligned_cols=158 Identities=22% Similarity=0.327 Sum_probs=127.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++..+.+...+.++.+..+.. +....+.+.+||+||+.++......+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999988877777766643333 33345789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+.++.++.....|+..+.......++|+++|+||+|+.+. ........... ....+++++||++|.|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-----QWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999888877655568999999999999762 22222222111 1124799999999999999999
Q ss_pred HHHHHhhh
Q 030000 175 WLIKHSKT 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988754
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=171.47 Aligned_cols=160 Identities=19% Similarity=0.237 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++..+.+...+.+|.+..+. . +....+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999887777777653322 2 33345778999999999999888889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc----------cCCCceeEEEeeeccC
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----------ITDREVCCYMISCKDS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~Sa~~~ 166 (184)
.+++.++......+...+... .++.|+++++||+|+.+............... ......+++++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999998865444444333 46899999999999855322111111000000 0011236899999999
Q ss_pred CCHHHHHHHHHHHh
Q 030000 167 INIDAVIDWLIKHS 180 (184)
Q Consensus 167 ~~i~~l~~~i~~~~ 180 (184)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-31 Score=175.88 Aligned_cols=156 Identities=22% Similarity=0.319 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|+|||||++++..+.+.. .+.+|.+..+. .+. ...+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988864 56677775442 233 3447788999999999998888999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC------HHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS------KQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|++++.++.....|+..+... ..+.|+++|+||+|+.+... .++..+ +. .....+++++||++|.|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~g 153 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD-FA----DEIKAQHFETSSKTGQN 153 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHH-HH----HHcCCeEEEEeCCCCCC
Confidence 9999999999888888776443 24799999999999864321 111111 11 11234689999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
++++++++.+.+.+
T Consensus 154 v~~l~~~i~~~~~~ 167 (193)
T cd04118 154 VDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=172.08 Aligned_cols=159 Identities=23% Similarity=0.284 Sum_probs=118.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
|+|+|++|+|||||++++..+.+...+.+|....+. . +....+.+.+|||||++++...+..+++++|++++|+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 579999999999999999999988777777654433 2 2334567999999999999998899999999999999999
Q ss_pred CCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHH--------hCCCccCCCc-eeEEEeeeccCC
Q 030000 99 DRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQ--------LGLESITDRE-VCCYMISCKDSI 167 (184)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~--------~~~~~~~~~~-~~~~~~Sa~~~~ 167 (184)
++++++.+.. |+..+... .+++|+++|+||+|+...... ....+. .........+ .+++++||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999998864 55555433 257999999999998653211 000000 0000001112 368999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
|++++|+.+.+.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987754
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=169.43 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+||+++|++|+|||||++++..+.+.....++...... .+....+.+++||+||++.+...+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998886554443332222 2344678899999999998888778888999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH---HHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 98 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ---ALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+++.++..+..++...++... .+.|+++|+||+|+.+..... +....+.. .. ....+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~-~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMN-EF-REIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHH-HH-hcccEEEEeccccccCHHHHHH
Confidence 999999987654444433322 479999999999997654321 11111100 00 0112689999999999999999
Q ss_pred HHHHHhhh
Q 030000 175 WLIKHSKT 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
.+.+.+..
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887643
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=171.83 Aligned_cols=159 Identities=19% Similarity=0.289 Sum_probs=126.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|+|||||++++....+...+.+|.+.... .+....+.+.+||++|++.+...+..+++++|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999998888777777775543 233344778999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|++++.++..+..|+..+.... ..+.|+++++||+|+.... ..++..+... ...++++++||+++.|+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEE 158 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 999999999999988877665432 3579999999999986532 2222222211 1234799999999999999
Q ss_pred HHHHHHHHhhh
Q 030000 172 VIDWLIKHSKT 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+++.+.+.+
T Consensus 159 ~f~~l~~~~~~ 169 (210)
T PLN03108 159 AFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHH
Confidence 99999887753
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=168.96 Aligned_cols=159 Identities=20% Similarity=0.257 Sum_probs=118.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.||+++|++|||||||++++..+.+...+.+|.+..+. . +....+.+.+||+||++++...+..++.++|++++|+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999888777777764432 2 33445788999999999998888788999999999999
Q ss_pred CCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc----------cCCCceeEEEeeecc
Q 030000 97 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----------ITDREVCCYMISCKD 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~Sa~~ 165 (184)
+++++++..... |...+... ..+.|+++++||+|+.+.....+......... ......++++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999888864 44444322 24789999999999865322111111000000 001234799999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030000 166 SINIDAVIDWLIKHS 180 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~ 180 (184)
|.|++++|+++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=164.78 Aligned_cols=155 Identities=25% Similarity=0.353 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||+++++++.+.....++.+... ..+. ...+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999998888766555554333 2333 33467899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|+++++++.....|+..+..... .++|+++++||+|+..... .++..+... ....+++++|+++|+|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHH
Confidence 99999999988888777655433 4799999999999875332 222222221 123468999999999999999
Q ss_pred HHHHHHh
Q 030000 174 DWLIKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998865
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-30 Score=171.27 Aligned_cols=157 Identities=22% Similarity=0.290 Sum_probs=123.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc-eeEEEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
||+++|++|+|||||+++++.+.+...+.+|.. .....+...+ +.+++||+||+..+...+..+++++|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999999888776666654 3223344333 7899999999999988888899999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 98 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+++.++.....|+..+.......++|+++++||+|+.+... .+...+... .....+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence 99999999998888887765556899999999999865321 111111111 01124689999999999999999
Q ss_pred HHHHHhh
Q 030000 175 WLIKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998765
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=174.31 Aligned_cols=160 Identities=21% Similarity=0.362 Sum_probs=122.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||++++..+.+. .+.+|.+.... .+. ...+.+.+||+||++++...+..+++++|+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 35799999999999999999999987764 45666665442 233 34578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 93 YVVDAADRDSVPIARSELHELLM-KPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
+|+|+++++++..+..++...+. .....+.|+++|+||+|+...... ++...... ....+++++||++|.|+
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-----EHGCLFLECSAKTRENV 165 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 99999999999998775544433 233456899999999998654322 22221111 12346999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030000 170 DAVIDWLIKHSKT 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++|+++.+.+..
T Consensus 166 ~~l~~~l~~~~~~ 178 (211)
T PLN03118 166 EQCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987754
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=172.02 Aligned_cols=154 Identities=21% Similarity=0.257 Sum_probs=115.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EE--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RK--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+|++++|++|+|||||+.++..+.+...+.+|....+ .. ++...+.+.+||+||++++...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999999888887777764222 12 33445788999999999999988889999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-------------HHHHHHhCCCccCCCceeEEEee
Q 030000 97 AADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSK-------------QALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
++++.+++... .|+..+... ..+.|+++++||+|+.+.... .+....+.. ......++++|
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~---~~~~~~~~e~S 155 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE---KIGACEYIECS 155 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH---HhCCCeEEEEe
Confidence 99999999885 455555432 246999999999998643210 000111100 01123799999
Q ss_pred eccCCCHHHHHHHHHH
Q 030000 163 CKDSINIDAVIDWLIK 178 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~ 178 (184)
|++|.|++++|+.++-
T Consensus 156 a~~~~~v~~lf~~~~~ 171 (173)
T cd04130 156 ALTQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9999999999998763
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=168.26 Aligned_cols=156 Identities=17% Similarity=0.232 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE---EEEeecCEEEEEEEcCCccc-hhHhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQRR-FRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~~~i~v~d 96 (184)
||+++|++|+|||||+++++.+.+...+.+|.+..+ ..++...+.+.+||+||++. +......+++++|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 589999999999999999998887766666654222 22444557899999999985 34456778899999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCC-CHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSI-NIDAV 172 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l 172 (184)
++++.+++.+..|+..+..... ..+.|+++|+||+|+.+... .++..+... ....+++++||++|. |++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-----ELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-----HcCCEEEEeCCCCCchhHHHH
Confidence 9999999999888776654332 45799999999999865322 211111111 112469999999995 99999
Q ss_pred HHHHHHHhh
Q 030000 173 IDWLIKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
|+++.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998764
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=172.83 Aligned_cols=157 Identities=20% Similarity=0.238 Sum_probs=110.7
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCCCCccce-e-EE-----------EEeecCEEEEEEEcCCccchhH
Q 030000 19 EMELSLIGLQNAGKTSLVN-TIATGG-----YSEDMIPTVGF-N-MR-----------KVTKGNVTIKLWDLGGQRRFRT 79 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~-~~~~~~-----~~~~~~~t~~~-~-~~-----------~~~~~~~~~~~~d~~g~~~~~~ 79 (184)
.+||+++|+.|+|||||+. ++.++. +...+.+|.+. . +. .++...+.+.+|||+|+++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 555443 34556677752 1 11 23455789999999999763
Q ss_pred hHHhhccCCCEEEEEEeCCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccC----------------HHHH
Q 030000 80 MWERYCRGVSAILYVVDAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS----------------KQAL 142 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------------~~~~ 142 (184)
....+++++|++++|||++++.++..+.. |...+.... ++.|+++|+||+|+..... ....
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 34557899999999999999999999974 666553332 4789999999999853100 0000
Q ss_pred HHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHH
Q 030000 143 VDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
....+.......++++++|||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 0000111111234579999999999999999999864
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=162.33 Aligned_cols=153 Identities=27% Similarity=0.462 Sum_probs=123.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE--e--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV--T--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~--~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.+..+.....+|.+...... . .....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887777777655542 2 24588999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc--cccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS--EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|+++++++.....|+..+.... ..+.|+++++||+|+. .....++..+.... ...+++++|+++|.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-----NGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHH
Confidence 9999888999888887776553 2579999999999996 22233333332221 34579999999999999999
Q ss_pred HHHHH
Q 030000 174 DWLIK 178 (184)
Q Consensus 174 ~~i~~ 178 (184)
++|.+
T Consensus 155 ~~i~~ 159 (159)
T cd00154 155 QSLAE 159 (159)
T ss_pred HHHhC
Confidence 99863
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=165.83 Aligned_cols=159 Identities=17% Similarity=0.330 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee-EEEEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN-MRKVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~-~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.||+++|++|+|||||++++.++.+.....+|.+.. ...+.. ..+.+.+||+||++++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999888876666666532 233333 34678999999999999889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
.++..+++....++..+.+.....+.|+++++||+|+..... .++...... ....+++++||++|.|+.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-----SWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999988887766556889999999999864322 111111111 1124799999999999999999
Q ss_pred HHHHHhhhc
Q 030000 175 WLIKHSKTA 183 (184)
Q Consensus 175 ~i~~~~~~~ 183 (184)
++.+.+...
T Consensus 157 ~l~~~~~~~ 165 (180)
T cd04137 157 LLIEEIEKV 165 (180)
T ss_pred HHHHHHHHh
Confidence 999887653
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=173.28 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccc--eeEEE--EeecCEEEEEEEcCCccchhHhHHhhcc-CCCEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS-EDMIPTVG--FNMRK--VTKGNVTIKLWDLGGQRRFRTMWERYCR-GVSAILY 93 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~--~~~~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~-~~~~~i~ 93 (184)
+||+++|++|+|||||++++..+.+. ..+.++.+ ..... +......+.+||+||++.+ ....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999888775 55556653 22233 3345688999999999832 2334556 8999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|||++++.++.....|+..+.......++|+++|+||+|+.+... .++. ..+. ....++++++||++|.|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~a----~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RACA----VVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHHH----HHcCCeEEEecCCCCCCHHH
Confidence 999999999999988888776654446899999999999865432 1111 1111 11234689999999999999
Q ss_pred HHHHHHHHhh
Q 030000 172 VIDWLIKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
+|+++.+.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-29 Score=162.97 Aligned_cols=158 Identities=24% Similarity=0.366 Sum_probs=122.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..++|+++|++|||||||++++..+.+.....+|.+... ..+... .+.+.+||+||++.+...+..++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 458999999999999999999998888777777776333 233333 4678999999999999988999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|+|+.++.++.....|+..+... ...++|+++++||+|+.+.... ....+.+.. ....+++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSD----AQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHH----HcCCeEEEeeCCCCCCHHHH
Confidence 99999988888888877655332 3357999999999998654332 222222211 11246999999999999999
Q ss_pred HHHHHHHh
Q 030000 173 IDWLIKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
|+++.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=163.05 Aligned_cols=155 Identities=25% Similarity=0.361 Sum_probs=123.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
||+++|++|||||||++++++..+.....++.+.... .+... .+.+.+||+||++.+......+++++|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 6899999999999999999988877777776663222 23333 57899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 98 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
++++++.....++..+.........|+++++||+|+.... ..+........ ...+++++|+++|.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKE-----WGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHH-----cCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999988888776555689999999999987632 12222222111 1147999999999999999999
Q ss_pred HHHHh
Q 030000 176 LIKHS 180 (184)
Q Consensus 176 i~~~~ 180 (184)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98764
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=166.01 Aligned_cols=157 Identities=18% Similarity=0.283 Sum_probs=116.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|||||||++++.++.+.....++...... ......+.+.+||+||++++.......++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999999886666665543222 233446789999999999888777788899999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH----------HHHHhCCCccCCCceeEEEeeeccC
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA----------LVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++++.++......+...+.... .+.|+++|+||+|+........ ..+.... .......+++++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKL-AKEIGAIGYMECSALTQ 158 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHH-HHHhCCeEEEEeecCCC
Confidence 9998888887665544443322 4799999999999976553211 0000000 01112237999999999
Q ss_pred CCHHHHHHHHHH
Q 030000 167 INIDAVIDWLIK 178 (184)
Q Consensus 167 ~~i~~l~~~i~~ 178 (184)
.|+++++++|.+
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=164.73 Aligned_cols=159 Identities=23% Similarity=0.429 Sum_probs=128.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----eecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|||||||+++++.+.+...+.+|.+...... ..+.+.+.+||++|++++...+..++.++++++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 4569999999999999999999988888888888888766553 345689999999999999888888999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+|+++..++..+..|+..+.... .+.|+++++||+|+.+.....+..... ......++++|+++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 87 IMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFH-----RKKNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999988887775442 478999999999986432222222211 122346899999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|.+|.+.+..
T Consensus 160 f~~ia~~l~~ 169 (215)
T PTZ00132 160 FLWLARRLTN 169 (215)
T ss_pred HHHHHHHHhh
Confidence 9999987754
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=163.07 Aligned_cols=157 Identities=22% Similarity=0.262 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.||+++|++|+|||||++++..+.+...+.+|....+. . +......+.+||++|++.+.......+.+++++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988887666666553332 2 23344678999999999887776677899999999999
Q ss_pred CCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccC------------HHHHHHHhCCCccCCCceeEEEeee
Q 030000 97 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS------------KQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++.+++..+.. |...+... .+++|+++|+||+|+.+... .++ ...+.. .....+++++||
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~e~Sa 155 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQ-GKRVAK---EIGAKKYMECSA 155 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHH-HHHHHH---HhCCcEEEEccC
Confidence 999999998875 55555432 24699999999999854211 011 111100 011236999999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++|.|++++|+++.+.+..
T Consensus 156 ~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 156 LTGEGVDDVFEAATRAALL 174 (187)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999977654
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=149.54 Aligned_cols=176 Identities=30% Similarity=0.532 Sum_probs=156.4
Q ss_pred HHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecC-EEEEEEEcCCccchhHhHH
Q 030000 4 LDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRFRTMWE 82 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~ 82 (184)
+.++...+++.+ .+++||+++|-.++|||||++.+. ++.+....+|.|++..++...+ +.+++||.+|+...+..|.
T Consensus 3 l~til~~~ks~t-~rEirilllGldnAGKTT~LKqL~-sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWs 80 (185)
T KOG0074|consen 3 LETILCCCKSRT-RREIRILLLGLDNAGKTTFLKQLK-SEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWS 80 (185)
T ss_pred HHHHHHHhcCCC-cceEEEEEEecCCCcchhHHHHHc-cCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhh
Confidence 344444455544 788999999999999999999995 4445677899999999998776 9999999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEee
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.|+.+.|++|||+|.+|...|+.+...+.+++.......+|+++..||.|+......++....+.+.....+.+.+-+||
T Consensus 81 NYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~cs 160 (185)
T KOG0074|consen 81 NYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECS 160 (185)
T ss_pred hhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCc
Confidence 99999999999999999999999999999999888888999999999999999888889998888888888899999999
Q ss_pred eccCCCHHHHHHHHHHHhh
Q 030000 163 CKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~ 181 (184)
|.+++|+..-.+|+....+
T Consensus 161 als~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred cccccCccCcchhhhcCCC
Confidence 9999999999999887654
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=156.97 Aligned_cols=169 Identities=32% Similarity=0.609 Sum_probs=148.0
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc-------CCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccC
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT-------GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRG 87 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~-------~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 87 (184)
+.+..+.|+++|..++|||||+.+.-. +-.+....+|.|.+...+...+..+.+||.+||+..++.|..+|..
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHH
Confidence 456789999999999999999998752 1122345679999999999889999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCC-CccCCCceeEEEeeeccC
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL-ESITDREVCCYMISCKDS 166 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~ 166 (184)
++++|+++|+++++.++.....+..+.......++|+++.+||.|+.+....+++...++. .....+..++.++||.+|
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTG 172 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence 9999999999999999999999999888888889999999999999988888888877773 334456778999999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 030000 167 INIDAVIDWLIKHSKTA 183 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~~ 183 (184)
+||++...|+...++++
T Consensus 173 egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 173 EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 99999999999998875
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=150.75 Aligned_cols=174 Identities=34% Similarity=0.599 Sum_probs=155.8
Q ss_pred HHhhhhcc-ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 10 WLRSLFFK-QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 10 ~~~~~~~~-~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
+++.+... .+.+|+++|..|+||||++.++.-++. ....||.|++...+.+++.++++||.+|+...+..|..|+.+.
T Consensus 8 ~f~~L~g~e~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt 86 (182)
T KOG0072|consen 8 LFKALQGPEREMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADT 86 (182)
T ss_pred HHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccccccccccceeeEccCcccccHHHHHHhccc
Confidence 34444444 789999999999999999988865553 3567899999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++|||+|.+|.+.+......+..++.+....+..++++.||.|..-.....+....+++.....+.+.+|.+||.+|+|
T Consensus 87 ~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~G 166 (182)
T KOG0072|consen 87 DAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEG 166 (182)
T ss_pred ceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccC
Confidence 99999999999999999998888888887778888999999999988888899999999988888999999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q 030000 169 IDAVIDWLIKHSKTAK 184 (184)
Q Consensus 169 i~~l~~~i~~~~~~~~ 184 (184)
+++..+|+.+-++.++
T Consensus 167 ld~~~DWL~~~l~~~~ 182 (182)
T KOG0072|consen 167 LDPAMDWLQRPLKSRQ 182 (182)
T ss_pred CcHHHHHHHHHHhccC
Confidence 9999999999888753
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-30 Score=157.49 Aligned_cols=159 Identities=28% Similarity=0.389 Sum_probs=127.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
-.|||+++|..-+|||||+-+++.++|.....+|....+ .+++ ....++.||||+||++|+..-+.|+++.+++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 369999999999999999999999999888777765333 3333 445778999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|||++|+++|+....|..++..... ..+-+++|+||+|+.+... .++..... ......++++||+++.||.+
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe~YA-----esvGA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAEAYA-----ESVGALYMETSAKDNVGISE 165 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHHHHH-----HhhchhheecccccccCHHH
Confidence 9999999999999999998855433 6688999999999965322 12222211 22344699999999999999
Q ss_pred HHHHHHHHhhh
Q 030000 172 VIDWLIKHSKT 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+.+...+.+
T Consensus 166 lFe~Lt~~MiE 176 (218)
T KOG0088|consen 166 LFESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHHH
Confidence 99988876643
|
|
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-30 Score=158.63 Aligned_cols=153 Identities=24% Similarity=0.432 Sum_probs=127.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe-------------ecCEEEEEEEcCCccchhHhHHhhcc
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT-------------KGNVTIKLWDLGGQRRFRTMWERYCR 86 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~-------------~~~~~~~~~d~~g~~~~~~~~~~~~~ 86 (184)
+|.+.+|++|+||||++.+...++|.....+|+|+++..-. ...+-+++|||+||++|++..-.+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999997776521 12367899999999999999999999
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-----HHHHHHhCCCccCCCceeEEEe
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVCCYMI 161 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++=++++++|+++..+|.+...|+.++..+.-..+..+++++||+|+.+.... ..+.+.++ .|||++
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg--------lPYfET 161 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYG--------LPYFET 161 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhC--------CCeeee
Confidence 99999999999999999999999998866655567789999999999664322 23333333 479999
Q ss_pred eeccCCCHHHHHHHHHHHh
Q 030000 162 SCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~~ 180 (184)
||-+|.||++..+.+.+.+
T Consensus 162 SA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 162 SACTGTNVEKAVELLLDLV 180 (219)
T ss_pred ccccCcCHHHHHHHHHHHH
Confidence 9999999998887776654
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=159.01 Aligned_cols=117 Identities=28% Similarity=0.403 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe-------ecCEEEEEEEcCCccchhHhHHhhccCCCE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT-------KGNVTIKLWDLGGQRRFRTMWERYCRGVSA 90 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~-------~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (184)
+||+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+++||++|++++......+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999998888888884432 222 245789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCC------------------CCCCCcEEEEEeCCCcccc
Q 030000 91 ILYVVDAADRDSVPIARSELHELLMKP------------------SLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~iivv~nK~D~~~~ 136 (184)
+|+|||++++.+++.+..|+..+.... ...++|+++|+||.|+.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 999999999999999999998886531 2357999999999998653
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-27 Score=153.46 Aligned_cols=154 Identities=18% Similarity=0.124 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEeecCEEEEEEEcCCccchh---------HhHHhhccCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFR---------TMWERYCRGV 88 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~~~~ 88 (184)
.+|+++|++|+|||||++++.+..+.... ..|.+.....+...+..+++|||||+.... .........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 37999999999999999999988764322 235556666666677899999999974210 1111112336
Q ss_pred CEEEEEEeCCCCCCH--HHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 89 SAILYVVDAADRDSV--PIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
|++++|+|+++..++ .....++..+... ..+.|+++|+||+|+.+.....+..+.. ....++++++||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEEE-----ELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHhh-----hhccCceEEEEeccc
Confidence 899999999887654 4444555544322 1479999999999997654433311111 223457999999999
Q ss_pred CCHHHHHHHHHHHh
Q 030000 167 INIDAVIDWLIKHS 180 (184)
Q Consensus 167 ~~i~~l~~~i~~~~ 180 (184)
.|++++++++.+++
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=152.43 Aligned_cols=151 Identities=28% Similarity=0.462 Sum_probs=126.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC
Q 030000 24 LIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 24 v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
++|++++|||+|+-++..+.|-. ...+|+|+.+.. +....+++++|||+||++|++....+++++|+.+++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999999988777743 445788876653 4566789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc-----cCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 99 DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA-----LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
+..||++...|+.++..+. ...+.+++++||+|+..+ ++-+.+.+..+. |++++||++|.|++..|
T Consensus 82 nkasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i--------pfmetsaktg~nvd~af 152 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI--------PFMETSAKTGFNVDLAF 152 (192)
T ss_pred cchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHHHCC--------CceeccccccccHhHHH
Confidence 9999999999999886653 367889999999999542 233555565554 69999999999999999
Q ss_pred HHHHHHhhhc
Q 030000 174 DWLIKHSKTA 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
-.|.+.+.+.
T Consensus 153 ~~ia~~l~k~ 162 (192)
T KOG0083|consen 153 LAIAEELKKL 162 (192)
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=155.04 Aligned_cols=157 Identities=23% Similarity=0.209 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecCE-EEEEEEcCCccc----h---hHhHHhhccCCCE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNV-TIKLWDLGGQRR----F---RTMWERYCRGVSA 90 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~----~---~~~~~~~~~~~~~ 90 (184)
+|+++|.+|||||||++++.+...... ...|.......+...+. .+.+|||||+.+ . ...+...+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 689999999999999999987654221 22344444444555555 899999999642 1 1122233557999
Q ss_pred EEEEEeCCCC-CCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 91 ILYVVDAADR-DSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 91 ~i~v~d~~~~-~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|++++ .++.....|...+..... ..++|+++|+||+|+.+.....+....+... ....+++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE---LWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhh---CCCCCEEEEecCCCCC
Confidence 9999999998 788888877776654322 2478999999999997655443333322111 0234689999999999
Q ss_pred HHHHHHHHHHHh
Q 030000 169 IDAVIDWLIKHS 180 (184)
Q Consensus 169 i~~l~~~i~~~~ 180 (184)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-28 Score=160.05 Aligned_cols=160 Identities=26% Similarity=0.366 Sum_probs=135.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+||+++|.+|+|||+|..++..+.|...+.+|++..+.+ ++.+.+.+.|+||+|++++..+...++++.+++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999854543 556668899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|++++..||+....++..+.+......+|+++|+||+|+.... ..++- +.+ .....++++++||+.+.+++++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg-~~l----a~~~~~~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEG-KAL----ARSWGCAFIETSAKLNYNVDEV 156 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHH-HHH----HHhcCCcEEEeeccCCcCHHHH
Confidence 9999999999999999999777777789999999999997632 22221 111 2334456999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|..+...+..
T Consensus 157 F~~L~r~~~~ 166 (196)
T KOG0395|consen 157 FYELVREIRL 166 (196)
T ss_pred HHHHHHHHHh
Confidence 9999987765
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=154.03 Aligned_cols=152 Identities=20% Similarity=0.297 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCcc------ceeE----EEE-----eecCEEEEEEEcCCccchh
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGG-------YSEDMIPTV------GFNM----RKV-----TKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~-------~~~~~~~t~------~~~~----~~~-----~~~~~~~~~~d~~g~~~~~ 78 (184)
+|+++|++++|||||++++++.. +...+.++. +... ... +..++.+++|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998632 111111111 1111 112 3457889999999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCccCCCc
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITDRE 155 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~ 155 (184)
..+..+++++|++++|+|+++..+......+.. ... .++|+++|+||+|+.+... .+++.+.++. ..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~-----~~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGL-----DP 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC-----Cc
Confidence 999999999999999999998766666554433 221 4689999999999864321 1233333322 12
Q ss_pred eeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 156 VCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..++++||++|+|++++++++.+.++.
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 358999999999999999999987753
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=150.99 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCC--CCCccceeEEEEeec-CEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG---YSED--MIPTVGFNMRKVTKG-NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~---~~~~--~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.|+++|++|+|||||++++.+.. +... ...|.+.....+... +..+.+|||||++++......+++++|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 368999999999999999998632 2222 223444444444444 6789999999999988777778899999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH----HHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
|+|+++..... ....+. .+... ...|+++++||+|+.+.... ++..+.+... .....+++++||++|+|+
T Consensus 81 V~d~~~~~~~~-~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIMPQ-TREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCccHh-HHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCH
Confidence 99997632111 112111 11111 22489999999999654221 2233333211 113457999999999999
Q ss_pred HHHHHHHHH
Q 030000 170 DAVIDWLIK 178 (184)
Q Consensus 170 ~~l~~~i~~ 178 (184)
+++++++.+
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=155.06 Aligned_cols=154 Identities=22% Similarity=0.279 Sum_probs=109.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEeecC-EEEEEEEcCCccc---------hhHhHHhh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGN-VTIKLWDLGGQRR---------FRTMWERY 84 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~---------~~~~~~~~ 84 (184)
+..++|+++|++|||||||++++.+..+.. ...+|.......+...+ ..+.+||+||..+ +.... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 345899999999999999999999876432 23345555555555444 4899999999732 22211 23
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+.++|++++|+|++++.++.....+...+ ......++|+++|+||+|+.+..... .. ......+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcC
Confidence 66899999999999888877665544433 33334578999999999996643322 11 12234469999999
Q ss_pred cCCCHHHHHHHHHHHh
Q 030000 165 DSINIDAVIDWLIKHS 180 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~ 180 (184)
+|.|+++++++|.+++
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998764
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=139.59 Aligned_cols=155 Identities=21% Similarity=0.327 Sum_probs=124.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.||-+++|+-|+|||+|+..+...+|-...+.|+|..+. .+....+++++||++|+++|+.....+++.+.+.++|
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv 90 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 90 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence 589999999999999999999988887777788875554 3556678899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++.+.++..+..|+....+. ..++..+++++||.|+....+. ++..+... .....++++||++|.|+++.
T Consensus 91 yditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~fae-----engl~fle~saktg~nveda 164 (215)
T KOG0097|consen 91 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAE-----ENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred EEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHh-----hcCeEEEEecccccCcHHHH
Confidence 9999999999999999887544 3477889999999999664432 22222111 22346999999999999988
Q ss_pred HHHHHHH
Q 030000 173 IDWLIKH 179 (184)
Q Consensus 173 ~~~i~~~ 179 (184)
|-...+.
T Consensus 165 fle~akk 171 (215)
T KOG0097|consen 165 FLETAKK 171 (215)
T ss_pred HHHHHHH
Confidence 8544433
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-26 Score=148.19 Aligned_cols=156 Identities=22% Similarity=0.252 Sum_probs=110.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEee---cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.|+++|++|+|||||++++..+.+.....+ |.......+.. .+..+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998876654322 33333333443 3678999999999999888888899999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHH---hCCCc--cCCCceeEEEeeeccCCCHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ---LGLES--ITDREVCCYMISCKDSINID 170 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~Sa~~~~~i~ 170 (184)
|+++........ .+..+ .. .++|+++|+||+|+.... .+...+. +.... .....++++++|+++|+|++
T Consensus 82 d~~~~~~~~~~~-~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQTIE-AIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHHHH-HHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 998754332222 12222 22 478999999999986432 2222221 11111 12345689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+..++
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T cd01887 156 DLLEAILLLAEK 167 (168)
T ss_pred HHHHHHHHhhhc
Confidence 999999987653
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-26 Score=161.52 Aligned_cols=161 Identities=19% Similarity=0.195 Sum_probs=118.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEee-cCEEEEEEEcCCccc-------hhHhHHhhccCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTK-GNVTIKLWDLGGQRR-------FRTMWERYCRGV 88 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~-------~~~~~~~~~~~~ 88 (184)
-..|+++|.++||||||++++.+.+.... ..+|.......+.. ....+.+||+||..+ ....+..+++++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 46799999999999999999997654322 23566666766766 457899999999642 233445567789
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccCHH-HHHHHhCCCccCCCceeEEEeeeccC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+++++|+|+++.++++....|..++..+.. ..++|+++|+||+|+.+..... +..+... .....+++++||+++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~----~~~~~~i~~iSAktg 313 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL----AALGGPVFLISAVTG 313 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH----HhcCCCEEEEEcCCC
Confidence 999999999988888888888777755422 2478999999999986544322 1111111 112357999999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 030000 167 INIDAVIDWLIKHSKTA 183 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~~ 183 (184)
+|++++++++.+.+.+.
T Consensus 314 ~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 314 EGLDELLRALWELLEEA 330 (335)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988654
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=167.66 Aligned_cols=160 Identities=21% Similarity=0.183 Sum_probs=113.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCcc----------chhHhH-Hh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR----------RFRTMW-ER 83 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~-~~ 83 (184)
..++|+++|.+|+|||||++++++.... ...+.|.......+...+..+.+|||||.. .+.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4689999999999999999999987642 223344445455566777888999999953 222221 23
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++++|++++|+|++++.++.... ++..+.. .++|+++|+||+|+.+........+.+..........+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 578999999999999988877664 3333322 47899999999999754332222222221111223457999999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++|.|++++|+.+.+.+++
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987754
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=144.36 Aligned_cols=154 Identities=22% Similarity=0.322 Sum_probs=116.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EeecC--EEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|.+|+|||||++++..+.+...+.++.+..... +...+ +.+.+||+||+..+...+....++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999888766666666655544 55556 8899999999999998888888999999999
Q ss_pred EeCCCC-CCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADR-DSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|.... .++.... .+...+...... +.|+++++||+|+............+... ...+++++||++|.|+.++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAKLKTHVAFLFAKL----NGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcchhhHHHHHHHhhc----cCCceEEeecCCCCCHHHH
Confidence 998766 5555554 444444443332 78999999999997654333333333221 2235999999999999999
Q ss_pred HHHHH
Q 030000 173 IDWLI 177 (184)
Q Consensus 173 ~~~i~ 177 (184)
+++|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 99874
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=156.19 Aligned_cols=161 Identities=25% Similarity=0.304 Sum_probs=106.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCC-----------ccchhHhHHhhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QRRFRTMWERYC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~~ 85 (184)
...++|+++|.+|+|||||++++.+..+.....++.+.....+... .+.+||||| ++.+...+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 3468999999999999999999998776554445444433344433 689999999 566666655554
Q ss_pred c----CCCEEEEEEeCCCCCCHH---------HHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCc
Q 030000 86 R----GVSAILYVVDAADRDSVP---------IARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLES 150 (184)
Q Consensus 86 ~----~~~~~i~v~d~~~~~~~~---------~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~ 150 (184)
. .++++++|+|..+...+. .....+...+.. .++|+++|+||+|+.+.. ..+++.+.++...
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 3 457888899986432210 011111222222 479999999999986543 2344444444311
Q ss_pred -cCCCceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 151 -ITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 151 -~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
......+++++||++| |+++++++|.+.+...
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 1111236899999999 9999999999987653
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=160.59 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=110.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccc-hhHh-------HHhhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR-FRTM-------WERYC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~-~~~~-------~~~~~ 85 (184)
.+.++|+++|.+|+|||||+|++.+..+. +...+|.+.....+...+.++.+|||||..+ +... ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 35679999999999999999999987764 3344555555566777888999999999743 2211 11247
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.++|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...+..+.+... .....++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccC
Confidence 78999999999754 455554444433332 34677889999998643 233333333211 1234699999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
|.|++++++++.+.++.
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999988764
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=149.16 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC----CCCC-----CCCCccceeEEEEee--------------cCEEEEEEEcCCccc
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG----GYSE-----DMIPTVGFNMRKVTK--------------GNVTIKLWDLGGQRR 76 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~----~~~~-----~~~~t~~~~~~~~~~--------------~~~~~~~~d~~g~~~ 76 (184)
++|+++|++++|||||+++++.. .+.. ....|.+.....+.. .++.+++|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 1111 122444444333332 268899999999987
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH----HHHHHHhCC--Cc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALVDQLGL--ES 150 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~~~~~~~--~~ 150 (184)
+..........+|++++|+|+.+.........+. +... .+.|+++++||+|+...... ++..+.+.. ..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6555555567889999999998755444332222 1111 25799999999998754332 222222111 01
Q ss_pred cCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 151 ITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.....++++++||++|+|++++++++.+.+.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1224568999999999999999999998775
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=155.16 Aligned_cols=153 Identities=20% Similarity=0.172 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchh--------HhHHhhccCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--------TMWERYCRGVS 89 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~~~~ 89 (184)
+|+++|.+|+|||||+|++++.+.. .....|...........+.++.+|||||..... .....+++++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999987653 222233333333344556789999999965321 12334578999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++++|+|+++..+.. .++...+.. .+.|+++|+||+|+.+..........+... ....+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCH
Confidence 999999998876654 222333332 478999999999996433222222222111 11126899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030000 170 DAVIDWLIKHSKT 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++++++.+.++.
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998765
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-25 Score=147.30 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC------------------CccceeEEEEeecCEEEEEEEcCCccchhHhHH
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMI------------------PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE 82 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~------------------~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 82 (184)
+|+++|.+|+|||||++++++........ .+.......+...+..+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999998766544321 222333344556678999999999999888888
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH----HHHHHhCCCcc-------
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESI------- 151 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~----~~~~~~~~~~~------- 151 (184)
.+++.+|++++|+|+.++...... ..+... .. .+.|+++++||+|+....... ...+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~-~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIA-RE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-HHHHHH-HH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 889999999999999876544322 222222 22 579999999999997644432 23333332211
Q ss_pred --CCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 152 --TDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 152 --~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.....+++++||++|.|++++++++.+.++.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 2246789999999999999999999998763
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-25 Score=142.07 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchhH--------hHHhhccCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT--------MWERYCRGV 88 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~ 88 (184)
++|+++|++|+|||||++++++.... .....+.......+...+..+.+|||||...+.. .....+.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 58999999999999999999976642 1222333344445666778999999999765432 122456789
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+.++.+......+.. ..+.|+++++||+|+.+.... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998777766543322 357999999999999765433 1223345799999999999
Q ss_pred HHHHHHHHHHHh
Q 030000 169 IDAVIDWLIKHS 180 (184)
Q Consensus 169 i~~l~~~i~~~~ 180 (184)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-25 Score=157.67 Aligned_cols=152 Identities=22% Similarity=0.266 Sum_probs=110.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEee-cCEEEEEEEcCCcc---------chhHhHHhhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQR---------RFRTMWERYC 85 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~---------~~~~~~~~~~ 85 (184)
..++|+++|.+|+|||||+|++.+.... ....+|.+.....+.. .+..+.+|||||.. .+.... ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 3489999999999999999999987643 2345677776666666 46789999999972 233322 247
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.++|++++|+|++++.+......+.. ++......+.|+++|+||+|+.+..... .... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~-~L~~l~~~~~piIlV~NK~Dl~~~~~v~---~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEK-VLEELGAEDIPQLLVYNKIDLLDEPRIE---RLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHH-HHHHhccCCCCEEEEEEeecCCChHhHH---HHHh------CCCCEEEEEccC
Confidence 78999999999999887766544333 3333334578999999999996532221 1111 112589999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030000 166 SINIDAVIDWLIKHS 180 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~ 180 (184)
|.|+++++++|.+.+
T Consensus 337 g~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 337 GEGLDLLLEAIAERL 351 (351)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998753
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=147.34 Aligned_cols=157 Identities=25% Similarity=0.311 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCCCCCC----------------CCccceeEEEEeecCEEEEEEEcCCccchhHhH
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT--GGYSEDM----------------IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW 81 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~--~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 81 (184)
-+|+++|++++|||||+++++. +.+.... ..|.......+...+..+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999996 4443322 122233334567788999999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCC--ccCCCce
Q 030000 82 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLE--SITDREV 156 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~--~~~~~~~ 156 (184)
..+++++|++++|+|+++.. +.....++..... .++|+++++||+|+..... .++..+.+... ......+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998642 2333333333322 4789999999999865322 12222222110 1122356
Q ss_pred eEEEeeeccCCCH----------HHHHHHHHHHhh
Q 030000 157 CCYMISCKDSINI----------DAVIDWLIKHSK 181 (184)
Q Consensus 157 ~~~~~Sa~~~~~i----------~~l~~~i~~~~~ 181 (184)
+++++||++|.|+ .++.+.|.+.++
T Consensus 158 ~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 158 PVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred CEEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 8999999999765 455555555443
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-25 Score=163.59 Aligned_cols=160 Identities=19% Similarity=0.165 Sum_probs=112.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh-----------HHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM-----------WER 83 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------~~~ 83 (184)
..++|+++|.+++|||||++++++... ....+.|.......+...+..+.+|||||..+.... ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 358999999999999999999997653 222334444444556667778999999997543321 123
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc-cccCHHHHHHHhCCCccCCCceeEEEee
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS-EALSKQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
+++.+|++++|+|+.++.+..... .+..... .++|+++|+||+|+. +....++..+.+..........+++++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 578899999999999876665543 2222222 478999999999997 3233334444433222223456899999
Q ss_pred eccCCCHHHHHHHHHHHhhh
Q 030000 163 CKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~ 182 (184)
|++|.|++++++++.+....
T Consensus 326 A~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887653
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-25 Score=146.27 Aligned_cols=159 Identities=23% Similarity=0.268 Sum_probs=115.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC--------------------CCCCCccceeEEEEe--ecCEEEEEEEcCCcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS--------------------EDMIPTVGFNMRKVT--KGNVTIKLWDLGGQR 75 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~--------------------~~~~~t~~~~~~~~~--~~~~~~~~~d~~g~~ 75 (184)
+..+|+++|+.++|||||+++|+..... ....-|.......+. .....++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5689999999999999999999943321 112345566666777 889999999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhC-----CCc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG-----LES 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~-----~~~ 150 (184)
.|.......+..+|++|+|+|+.++-... ....+..... .++|+++|+||+|+... ...+..+.+. ...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeecccccccc-cccccccccc----cccceEEeeeeccchhh-hHHHHHHHHHHHhccccc
Confidence 99998889999999999999998764433 3333333322 47899999999999832 2222222111 111
Q ss_pred cCC-CceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 151 ITD-REVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 151 ~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
... ..++++++||++|.|++++++.+.+.++.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLPS 188 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS--
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCcC
Confidence 112 36799999999999999999999998863
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=161.69 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=111.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh--------HHhhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM--------WERYC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 85 (184)
+..++|+++|.+|+|||||+|++++.+. ......|.+.....+...+..+.+|||||.+++... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 3568999999999999999999998663 223344656666667778889999999998754332 22357
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+++|++++|+|++++.++.....+.. ..+.|+++|+||+|+.+..... .....+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 88999999999998877764433221 3578999999999996543222 11234689999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030000 166 SINIDAVIDWLIKHSK 181 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~ 181 (184)
|.|++++++++.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998875
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-25 Score=156.29 Aligned_cols=158 Identities=20% Similarity=0.208 Sum_probs=114.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecC-EEEEEEEcCCccc-------hhHhHHhhccCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-VTIKLWDLGGQRR-------FRTMWERYCRGV 88 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~-------~~~~~~~~~~~~ 88 (184)
...|+++|.++||||||++++........ ..+|.......++..+ ..+.+||+||..+ ....+..+++++
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 46799999999999999999997654322 2345556666666666 8899999999642 223344456789
Q ss_pred CEEEEEEeCCCC---CCHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 89 SAILYVVDAADR---DSVPIARSELHELLMKP-SLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 89 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+++++|+|+++. .+++....+..++.... ...+.|+++|+||+|+......++..+.+... ...+++++||+
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~----~~~~vi~iSAk 312 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA----LGKPVFPISAL 312 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH----cCCcEEEEEcc
Confidence 999999999876 57777777666654432 12478999999999997654444444333211 12469999999
Q ss_pred cCCCHHHHHHHHHHHh
Q 030000 165 DSINIDAVIDWLIKHS 180 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~ 180 (184)
+++|+++++++|.+.+
T Consensus 313 tg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 313 TGEGLDELLYALAELL 328 (329)
T ss_pred CCcCHHHHHHHHHHHh
Confidence 9999999999998865
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-26 Score=148.82 Aligned_cols=164 Identities=21% Similarity=0.296 Sum_probs=126.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---Ee-ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+|++|+|+.++|||+|+-.+..+.|+..+.||...++.. +. ...+.+.+|||+||++|...+...+.++|.+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 46899999999999999999999999999999998855443 42 566889999999999999988888999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc----------cCCCceeEEEeee
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----------ITDREVCCYMISC 163 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~Sa 163 (184)
||++.++.++++...-|...+++.. +++|+++|++|.|+.+.....+.....+... ....-..+++|||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 9999999999997555544444444 7899999999999974321111111111100 0012256999999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++..|+.++|+........
T Consensus 162 ~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhCCcHHHHHHHHHHHhc
Confidence 9999999999988877643
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-25 Score=142.04 Aligned_cols=134 Identities=21% Similarity=0.221 Sum_probs=92.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCcc-----chhHhHHhhccCCCEEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR-----RFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~-----~~~~~~~~~~~~~~~~i~v~ 95 (184)
||+++|++|+|||||++++.+..+. +.+|.+..+ .. .+||+||+. .+.... ..++++|++++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-----~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~ 70 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-----ND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQ 70 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-----cC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEe
Confidence 8999999999999999999877652 334443322 11 689999973 233333 3578999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|++++.++... .|. ... ..|+++++||+|+.+.. ..++..+..... ...+++++||++|.|++++|+
T Consensus 71 d~~~~~s~~~~-~~~-~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 71 SATDPESRFPP-GFA-SIF------VKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred cCCCCCcCCCh-hHH-Hhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCCCCHHHHHH
Confidence 99999887542 222 221 24999999999986532 222222222111 112689999999999999999
Q ss_pred HHH
Q 030000 175 WLI 177 (184)
Q Consensus 175 ~i~ 177 (184)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=155.37 Aligned_cols=121 Identities=21% Similarity=0.392 Sum_probs=102.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEee---------------cCEEEEEEEcCCccchh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK---------------GNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~---------------~~~~~~~~d~~g~~~~~ 78 (184)
....+||+++|+.|+|||||++++.++.+...+.+|+|.... .+.. ..+.+++||++|++++.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 345799999999999999999999999998888889886542 2332 34779999999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-----------CCCCcEEEEEeCCCcccc
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-----------LSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~iivv~nK~D~~~~ 136 (184)
.++..++++++++|+|+|+++..++..+..|+..+..... ..++|+++|+||+|+.+.
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999999988865421 135899999999999653
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=146.62 Aligned_cols=153 Identities=24% Similarity=0.238 Sum_probs=107.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEeec-CEEEEEEEcCCccch-------hHhHHhhccCCCEEEE
Q 030000 24 LIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQRRF-------RTMWERYCRGVSAILY 93 (184)
Q Consensus 24 v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~-------~~~~~~~~~~~~~~i~ 93 (184)
++|++|+|||||++++.+... ......|.......+... +..+.+||+||..+. ...+...++++|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998764 222334555555556666 888999999996321 1122345778999999
Q ss_pred EEeCCCC------CCHHHHHHHHHHHhcCCC------CCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEe
Q 030000 94 VVDAADR------DSVPIARSELHELLMKPS------LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMI 161 (184)
Q Consensus 94 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
|+|+.+. .++.....+...+..... ..+.|+++|+||+|+............. .......+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE---LALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH---HhcCCCCCEEEE
Confidence 9999887 466666666666644322 1479999999999997654433321111 112234569999
Q ss_pred eeccCCCHHHHHHHHHHH
Q 030000 162 SCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~ 179 (184)
||+++.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999999765
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-25 Score=148.14 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCCccceeEEEEee---------------------------------
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSE-----DMIPTVGFNMRKVTK--------------------------------- 61 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~-----~~~~t~~~~~~~~~~--------------------------------- 61 (184)
++|+++|+.|+|||||++.+....... ....|....+..+.+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 478999999999999999996431111 111122211111111
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~ 141 (184)
....+.+||+||++++...+...+..+|++++|+|+.++.........+..+... ...|+++++||+|+........
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 1267999999999999888888889999999999998642211222222222111 2357999999999975332222
Q ss_pred HHHHhCC--CccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 142 LVDQLGL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 142 ~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..+.+.. .......++++++||++|+|++++++++.+.++.
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 2222111 1111234579999999999999999999988764
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=140.39 Aligned_cols=146 Identities=23% Similarity=0.216 Sum_probs=102.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccchhH--------hHHhhccCCCEE
Q 030000 23 SLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT--------MWERYCRGVSAI 91 (184)
Q Consensus 23 ~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~~~~ 91 (184)
+++|.+|+|||||++++++... ......|...........+..+.+|||||...+.. .....++++|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4789999999999999997652 12222344455555667778999999999877543 334567889999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
++|+|+.+..+.... ++..++.. .+.|+++|+||+|+.+..........++ ..+++++|+++|.|+++
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLG-------FGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcC-------CCCeEEEecccCCCHHH
Confidence 999999765444332 23333332 3599999999999976433211111111 11579999999999999
Q ss_pred HHHHHHHHh
Q 030000 172 VIDWLIKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++++.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998764
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=147.80 Aligned_cols=164 Identities=26% Similarity=0.401 Sum_probs=121.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEee----cCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|||||||++++..+.+...+.+|.+..+..... ..+++.+||++|++++...+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999998888887755544222 15779999999999999999999999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHH-----------hCCCccC-CCceeEEE
Q 030000 94 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ-----------LGLESIT-DREVCCYM 160 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~ 160 (184)
|+|..+..++... ..|...+ ......+.|+++++||+|+............ ....... .....+++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l-~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEEL-RELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEecccchhhhHHHHHHHHHH-HHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 9999984454444 5554444 3333357999999999999876432211110 0000000 01223899
Q ss_pred eeec--cCCCHHHHHHHHHHHhhh
Q 030000 161 ISCK--DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~--~~~~i~~l~~~i~~~~~~ 182 (184)
+|++ ++.++++++..+...+.+
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHH
Confidence 9999 999999999998887753
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-25 Score=142.10 Aligned_cols=152 Identities=28% Similarity=0.451 Sum_probs=114.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEee----cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC
Q 030000 24 LIGLQNAGKTSLVNTIATGGY-SEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 24 v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
++|++|+|||||++++.+... .....+|. ........ ....+.+||+||+..+...+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 44444444 44444433 3788999999999988888888899999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 99 DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
++.+......++..........+.|+++++||+|+.............. .......+++++|++++.|+.+++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQ--LAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHH--HHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 9888887777644444445557899999999999976554433210000 11223457999999999999999999863
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-24 Score=156.63 Aligned_cols=151 Identities=23% Similarity=0.283 Sum_probs=108.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC--C-CCCCCccceeEEEEeecCEEEEEEEcCCccchhHh--------HHhh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGY--S-EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM--------WERY 84 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~--~-~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~ 84 (184)
.++.++|+++|++|+|||||+|++++... . ...+.|.......+...+..+.+|||||+.+.... ...+
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 34679999999999999999999997653 2 22233444555567778889999999998654432 2356
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|++++|+|++++.++... |+.... ..++|+++|+||+|+... +.+.+.+. ...+++.+|++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~NK~Dl~~~-~~~~~~~~--------~~~~~~~vSak 344 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVLNKIDLKIN-SLEFFVSS--------KVLNSSNLSAK 344 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEEECccCCCc-chhhhhhh--------cCCceEEEEEe
Confidence 7899999999999988877654 444332 246899999999998643 22222221 12358899999
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+ .||+++++.+.+.+.+
T Consensus 345 ~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 345 Q-LKIKALVDLLTQKINA 361 (442)
T ss_pred c-CCHHHHHHHHHHHHHH
Confidence 8 6899998888877643
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-25 Score=140.72 Aligned_cols=142 Identities=26% Similarity=0.344 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecCEEEEEEEcCCccch------hHhHHhhc--cCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRF------RTMWERYC--RGVS 89 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~------~~~~~~~~--~~~~ 89 (184)
++|+++|.|++|||||+|++++.+.... ++.|.......+...+..+.++|+||.-.. ......++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 5899999999999999999998875433 445777777778888999999999993221 12223333 5899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc----CHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++++|+|+++ ++.......++.. .++|+++++||+|..... +.+.+.+.++. |++.+||++
T Consensus 81 ~ii~VvDa~~---l~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATN---LERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSART 145 (156)
T ss_dssp EEEEEEEGGG---HHHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTT
T ss_pred EEEEECCCCC---HHHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCC
Confidence 9999999976 3333333333433 379999999999998754 45667776654 699999999
Q ss_pred CCCHHHHHHHH
Q 030000 166 SINIDAVIDWL 176 (184)
Q Consensus 166 ~~~i~~l~~~i 176 (184)
++|++++.+.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=160.93 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=108.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccc--------hhHhHHhhcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYCR 86 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 86 (184)
...+|+++|.+|+|||||++++++.... ...+.|.......+...+..+.+|||||.+. +......+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 3478999999999999999999976542 2222344445555667778899999999763 3344556788
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+|++++|+|+++..+... ..+...+.. .++|+++|+||+|+..... +..+..... . . ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g-~---~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSLG-L---G-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhcC-C---C-CeEEEEcCCC
Confidence 9999999999998766543 223333332 4799999999999864321 111111111 1 1 2478999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|++++++++.+.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999988754
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-26 Score=146.39 Aligned_cols=157 Identities=25% Similarity=0.417 Sum_probs=133.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+.-+|++|+|..++||||++++++.+-|...+..|++.++.. +..+++.+.+||++|++++......+++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 356999999999999999999999999999999999976654 5566778889999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-----HHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-----KQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+||+.+|..+|+....|...+.+.. ..+|.++|-||+|+.+... .+-..+.+ +..++-+|++...
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l--------~~RlyRtSvked~ 167 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL--------HKRLYRTSVKEDF 167 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHh--------hhhhhhhhhhhhh
Confidence 9999999999999999999986653 4899999999999976432 22233333 2347889999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030000 168 NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~~ 183 (184)
|+...|.++++.+.++
T Consensus 168 NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLTQQ 183 (246)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999887653
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=140.93 Aligned_cols=147 Identities=24% Similarity=0.253 Sum_probs=103.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEeecCEEEEEEEcCCccchhH------hHHhhc--cCCCEEEE
Q 030000 24 LIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRRFRT------MWERYC--RGVSAILY 93 (184)
Q Consensus 24 v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~~~~~~i~ 93 (184)
++|.+|+|||||++++.+........ .|.......++..+..+.+|||||+..+.. ....++ +++|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999876443333 355555566777778899999999876543 244455 48999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|+|+.+..... .++..+.. .++|+++++||+|+.+........+.+.. ..+.+++++|+++|.|+.+++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSE----LLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHH----hhCCCeEEEEccCCCCHHHHH
Confidence 99998754322 23333322 36899999999999764332221221111 112469999999999999999
Q ss_pred HHHHHHhh
Q 030000 174 DWLIKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+++.+..+
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988754
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=144.24 Aligned_cols=157 Identities=24% Similarity=0.297 Sum_probs=113.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe----ecCEEEEEEEcCCccchhHhHHhhccCC-CEEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGV-SAILYVV 95 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~d~~g~~~~~~~~~~~~~~~-~~~i~v~ 95 (184)
+|+++|++|||||||++++..+.+.....++ ......+. .....+.+||+||+.+++..+..+++++ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988776555443 22332222 2467899999999999999888899998 9999999
Q ss_pred eCCCC-CCHHHHHHHHHHHhcCC--CCCCCcEEEEEeCCCcccccCHHHHHHHhC-------------C-----------
Q 030000 96 DAADR-DSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEALSKQALVDQLG-------------L----------- 148 (184)
Q Consensus 96 d~~~~-~~~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~-------------~----------- 148 (184)
|+.+. .++.....++..++... ...++|+++++||+|+......+.+.+.+. +
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99887 66777766666554322 225899999999999876543322111110 0
Q ss_pred -----------CccCCCceeEEEeeeccCC-CHHHHHHHHHH
Q 030000 149 -----------ESITDREVCCYMISCKDSI-NIDAVIDWLIK 178 (184)
Q Consensus 149 -----------~~~~~~~~~~~~~Sa~~~~-~i~~l~~~i~~ 178 (184)
.......+.++++|++.+. |++++.+||.+
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0001136788999998876 69999999875
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=137.98 Aligned_cols=156 Identities=20% Similarity=0.138 Sum_probs=105.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchh-----------HhHHhh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-----------TMWERY 84 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~~~~~ 84 (184)
.++|+++|++|+|||||++++++.... .....+.......+...+..+.+||+||..+.. ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999876532 112223333334455566778999999964321 111234
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cCHHHHHHHhCCCccCCCceeEEEee
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
+.++|++++|+|+.++.+..... .+..... .+.|+++++||+|+... ...+...+.+..........+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLR-IAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHH-HHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 67899999999998887765432 2222221 36899999999999765 33333333332221112345799999
Q ss_pred eccCCCHHHHHHHHHHH
Q 030000 163 CKDSINIDAVIDWLIKH 179 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~ 179 (184)
|++++|+.++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-24 Score=139.96 Aligned_cols=136 Identities=21% Similarity=0.368 Sum_probs=106.8
Q ss_pred CCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 030000 42 GGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKP 117 (184)
Q Consensus 42 ~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 117 (184)
+.|...+.+|.+..+.. +....+.+.+|||||++++...+..+++++|++++|+|++++.+|.....|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677788899866643 33456889999999999999999999999999999999999999999999988886653
Q ss_pred CCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 118 SLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 118 ~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
. .++|+++|+||+|+.+.. ...+...... .....++++||++|+||+++|++|.+.+.+.
T Consensus 83 ~-~~~piilVgNK~DL~~~~~v~~~e~~~~~~-----~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 G-KDVIIALVGNKTDLGDLRKVTYEEGMQKAQ-----EYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred C-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3 568999999999986422 2222222111 1234689999999999999999999988653
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=156.25 Aligned_cols=161 Identities=22% Similarity=0.208 Sum_probs=113.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEeecCEEEEEEEcCCccch-------hHhHHhhccCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF-------RTMWERYCRGV 88 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~-------~~~~~~~~~~~ 88 (184)
--..|+++|.++||||||+++|.+.+... .+.+|.......++..+..+.+||+||.... ......+++++
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 34789999999999999999999765432 2345777777788888899999999995321 12233457789
Q ss_pred CEEEEEEeCCCC----CCHHHHHHHHHHHhcCC----------CCCCCcEEEEEeCCCcccccCHHHH-HHHhCCCccCC
Q 030000 89 SAILYVVDAADR----DSVPIARSELHELLMKP----------SLSGIPLLVLGNKIDKSEALSKQAL-VDQLGLESITD 153 (184)
Q Consensus 89 ~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~iivv~nK~D~~~~~~~~~~-~~~~~~~~~~~ 153 (184)
+++++|+|+++. +.+.....+..++..+. ...+.|.++|+||+|+.+.....+. .+.+. .
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~-----~ 312 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE-----A 312 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH-----H
Confidence 999999999753 34444444433343322 2347899999999999654332222 22221 1
Q ss_pred CceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 154 REVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
..++++++||++++|+++++++|.+.+...
T Consensus 313 ~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 313 RGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 245799999999999999999999888653
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-24 Score=142.01 Aligned_cols=162 Identities=20% Similarity=0.240 Sum_probs=105.2
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEeecCEEEEEEEcCCc----------cchhHhHHh
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGGQ----------RRFRTMWER 83 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~~g~----------~~~~~~~~~ 83 (184)
+....++|+++|++|+|||||+++++++.+.....++.+.... .....+.++.+||+||. +.+......
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 4456789999999999999999999987644444444332111 11112468999999994 334444444
Q ss_pred hccC---CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEE
Q 030000 84 YCRG---VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 84 ~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
++.. ++++++|+|..++..... .++...+.. .++|+++++||+|+.+....+...+.+... ......++++
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~~~~~~~~~ 173 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKA-LKFGDDEVIL 173 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHH-HHhcCCceEE
Confidence 4544 467888899876544332 222233322 468999999999997654443333222111 1111457899
Q ss_pred eeeccCCCHHHHHHHHHHHhhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+||++|.|++++++.|.+.+..
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999988764
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=152.28 Aligned_cols=156 Identities=20% Similarity=0.261 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEeec-CEEEEEEEcCCccc-------hhHhHHhhccCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKG-NVTIKLWDLGGQRR-------FRTMWERYCRGVS 89 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~-------~~~~~~~~~~~~~ 89 (184)
..|+++|.++||||||++++.+.+... .+.+|.......+... +..+.+||+||..+ ....+..++++++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 489999999999999999999766432 2334666666666665 68899999999632 1223334567799
Q ss_pred EEEEEEeCCCC---CCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 90 AILYVVDAADR---DSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|+|+++. +++.....+..++..+.. ..++|.++|+||+|+.... ..+++.+.+. .+++++||+
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~ 310 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISAL 310 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCC
Confidence 99999999764 566666666555544322 2478999999999984321 1122222222 368999999
Q ss_pred cCCCHHHHHHHHHHHhhhc
Q 030000 165 DSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~~ 183 (184)
+++|++++++++.+.+.+.
T Consensus 311 tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 311 TGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 9999999999999887653
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-24 Score=138.43 Aligned_cols=142 Identities=19% Similarity=0.211 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCcc----chhHhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR----RFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~----~~~~~~~~~~~~~~~~i~v~d 96 (184)
+|+++|++|+|||||++++.+.. .. ..+|.+..+. .. .+||+||.. ++.......++++|++++|+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~-~~~~~~v~~~---~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TL-ARKTQAVEFN---DK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-cc-CccceEEEEC---CC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe
Confidence 79999999999999999987543 21 1223222221 11 269999962 232233344789999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
+++..++.. .++... ..+.|+++++||+|+.. .+.+...+.+.... ...+++++||++|+|++++++++
T Consensus 74 ~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~---~~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 74 ANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPD-ADVAATRKLLLETG---FEEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred CCCcccccC--HHHHhc-----cCCCCeEEEEEccccCc-ccHHHHHHHHHHcC---CCCCEEEEECCCccCHHHHHHHH
Confidence 998776532 333332 13679999999999854 33333333322111 12479999999999999999999
Q ss_pred HHHhhh
Q 030000 177 IKHSKT 182 (184)
Q Consensus 177 ~~~~~~ 182 (184)
.+.+.+
T Consensus 143 ~~~~~~ 148 (158)
T PRK15467 143 ASLTKQ 148 (158)
T ss_pred HHhchh
Confidence 988754
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=162.68 Aligned_cols=160 Identities=17% Similarity=0.117 Sum_probs=114.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccc----------hhHh-HHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR----------FRTM-WER 83 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~-~~~ 83 (184)
..++|+++|.+|+|||||++++++... ....+.|.+.....+...+..+.+|||||..+ +... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 358999999999999999999998764 22233455555555667777889999999532 2111 123
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++++|++++|+|+++..+...... +..+.. .++|+++|+||+|+.+....+...+.+..........+++++||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~i-~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLKV-MSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 4788999999999998887776543 333322 47899999999999764443344333322211233457899999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988765
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=157.63 Aligned_cols=154 Identities=20% Similarity=0.249 Sum_probs=111.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCC----------CCccceeEEEEe-----ecCEEEEEEEcCCccc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGG-------YSEDM----------IPTVGFNMRKVT-----KGNVTIKLWDLGGQRR 76 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~-------~~~~~----------~~t~~~~~~~~~-----~~~~~~~~~d~~g~~~ 76 (184)
.-+|+++|+.++|||||+++++... +...+ +.|+......+. ...+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3579999999999999999998642 11111 112222222232 2348899999999999
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCccCC
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITD 153 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~ 153 (184)
|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++|+||+|+..... .+++.+.++.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~----- 152 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGL----- 152 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCC-----
Confidence 9999999999999999999999877777665554432 2 3689999999999864321 1233333322
Q ss_pred CceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 154 REVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
....++++||++|.|+++++++|.+.++.
T Consensus 153 ~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 153 DASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred CcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 11258999999999999999999988764
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-23 Score=150.52 Aligned_cols=154 Identities=24% Similarity=0.267 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEeecCE-EEEEEEcCCccch--hHhH------HhhccCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGNV-TIKLWDLGGQRRF--RTMW------ERYCRGV 88 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~--~~~~------~~~~~~~ 88 (184)
.+|+++|.+|+|||||+|++.+.+... ....|.+.....+...+. .+.+|||||..+. ...+ ...++++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 689999999999999999999766432 234566666656655543 7899999997331 1222 2336789
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCcee-EEEeeeccCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVC-CYMISCKDSI 167 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 167 (184)
|++++|+|++++.++.....+.. ++......++|+++|+||+|+.+.... .. .... ...+ ++++||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~-iL~el~~~~~pvIiV~NKiDL~~~~~~-~~-~~~~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNT-VLEEIDAHEIPTLLVMNKIDMLDDFEP-RI-DRDE------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHH-HHHHhccCCCCEEEEEEcccCCCchhH-HH-HHHh------cCCCceEEEeCCCCC
Confidence 99999999999877766543322 333333357999999999998643211 11 1110 0112 5789999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
|+++++++|.+.+..
T Consensus 349 GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 349 GIPLLFQALTERLSG 363 (426)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999988753
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=154.05 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=111.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchhH-----------hHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT-----------MWER 83 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~~ 83 (184)
..++|+++|.+|+|||||++++++.... ...+.|.......+...+..+.+|||||..+... ....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 5699999999999999999999976531 1222344444445566778899999999643211 1223
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++.+|++++|+|++++.+..... .+..... .++|+++++||+|+.+....++..+.+..........+++++||
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 578899999999999876665443 2222222 46899999999999754434444444432222234568999999
Q ss_pred ccCCCHHHHHHHHHHHhh
Q 030000 164 KDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~ 181 (184)
++|.|++++++.+.+...
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887654
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-23 Score=156.50 Aligned_cols=156 Identities=21% Similarity=0.271 Sum_probs=110.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCE-EEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNV-TIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+..+|+++|++++|||||++++.+..+.....+ |.......+...+. .+.+|||||++.|..++...+..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4568999999999999999999998776554332 33333344444333 89999999999999999888999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc----cCCCceeEEEeeeccCCCH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----ITDREVCCYMISCKDSINI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~i 169 (184)
|+|+++....+.... +... ...++|+++++||+|+... ..++..+.+.... ......+++++||++|+|+
T Consensus 165 VVda~dgv~~qT~e~-i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVMPQTIEA-ISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCCHhHHHH-HHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 999987543333322 2222 2247999999999998642 2233333322111 1112357999999999999
Q ss_pred HHHHHHHHH
Q 030000 170 DAVIDWLIK 178 (184)
Q Consensus 170 ~~l~~~i~~ 178 (184)
+++++++..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=134.00 Aligned_cols=154 Identities=23% Similarity=0.217 Sum_probs=103.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC---CCccceeEEEEeecCEEEEEEEcCCccchhH--------hHHhhccC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDM---IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT--------MWERYCRG 87 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~ 87 (184)
..+|+++|++|+|||||++++.+....... ..+.......+......+.+||+||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999876542211 1222222333455668899999999654322 23445788
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc-ccCHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALSKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+|++++|+|+.++.. ....++...+.. .+.|+++++||+|+.. .....+..+.+... ....+++.+|++++
T Consensus 83 ~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~ 154 (168)
T cd04163 83 VDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALKG 154 (168)
T ss_pred CCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEeccC
Confidence 999999999987622 222233333222 3689999999999973 33334333333221 22357899999999
Q ss_pred CCHHHHHHHHHHHh
Q 030000 167 INIDAVIDWLIKHS 180 (184)
Q Consensus 167 ~~i~~l~~~i~~~~ 180 (184)
.|+++++++|.+.+
T Consensus 155 ~~~~~l~~~l~~~~ 168 (168)
T cd04163 155 ENVDELLEEIVKYL 168 (168)
T ss_pred CChHHHHHHHHhhC
Confidence 99999999998764
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-23 Score=145.90 Aligned_cols=157 Identities=22% Similarity=0.205 Sum_probs=105.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCcccee-EEEEeecCEEEEEEEcCCccchh--------HhHHhhcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFN-MRKVTKGNVTIKLWDLGGQRRFR--------TMWERYCR 86 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~-~~~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~ 86 (184)
+.-.|+++|++|||||||+|++++...... ...|.... .......+.++.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 456799999999999999999998765321 12222222 22233456899999999964432 22334578
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc-ccCHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALSKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++|++++|+|+++. +.....++...+. ..+.|+++|+||+|+.. ........+.+... ....+++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence 89999999999873 2223333333333 24689999999999973 23333333333221 1234689999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
|.|++++++++.+.++.
T Consensus 156 ~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 156 GDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999988754
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=138.30 Aligned_cols=148 Identities=22% Similarity=0.294 Sum_probs=95.8
Q ss_pred hhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCc----cceeEEEEeecCEEEEEEEcCCcc----------ch
Q 030000 12 RSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPT----VGFNMRKVTKGNVTIKLWDLGGQR----------RF 77 (184)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~d~~g~~----------~~ 77 (184)
...+..+.++|+++|++|+|||||++++++..+.....++ ........+ ..+.+||+||.. .+
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~ 87 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKW 87 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHH
Confidence 3445567899999999999999999999987643333333 333333222 268999999942 23
Q ss_pred hHhHHhhcc---CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH----HHHHHHhCCCc
Q 030000 78 RTMWERYCR---GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALVDQLGLES 150 (184)
Q Consensus 78 ~~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~~~~~~~~~ 150 (184)
......+++ .++++++|+|+.++.+.... .+...+.. .++|+++++||+|+.+..+. +++.+.+...
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~- 161 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD- 161 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc-
Confidence 333334444 46899999999875554443 22223322 47899999999999754333 2233333221
Q ss_pred cCCCceeEEEeeeccCCCHH
Q 030000 151 ITDREVCCYMISCKDSINID 170 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~i~ 170 (184)
....+++++||++|+|++
T Consensus 162 --~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 --ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred --cCCCceEEEECCCCCCCC
Confidence 233479999999999973
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-23 Score=159.01 Aligned_cols=156 Identities=22% Similarity=0.293 Sum_probs=112.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+...|+++|+.++|||||+++|..+.+...... |.......+...+..+++|||||++.|..++...+..+|++++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILV 367 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLV 367 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEE
Confidence 4678999999999999999999987766543322 33333344566678999999999999999999889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhC---C-CccCCCceeEEEeeeccCCCHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG---L-ESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+++....+.... +... ...++|+++++||+|+... +.+.....+. . .......++++++||++|+|++
T Consensus 368 VdAddGv~~qT~e~-i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~ 441 (787)
T PRK05306 368 VAADDGVMPQTIEA-INHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID 441 (787)
T ss_pred EECCCCCCHhHHHH-HHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence 99987543333222 2222 2257999999999999653 2222222221 1 0111234689999999999999
Q ss_pred HHHHHHHH
Q 030000 171 AVIDWLIK 178 (184)
Q Consensus 171 ~l~~~i~~ 178 (184)
+++++|..
T Consensus 442 eLle~I~~ 449 (787)
T PRK05306 442 ELLEAILL 449 (787)
T ss_pred HHHHhhhh
Confidence 99999874
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-23 Score=133.58 Aligned_cols=152 Identities=25% Similarity=0.200 Sum_probs=106.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCCC--CccceeEEEEeec-CEEEEEEEcCCccchhH-------hHHhhccCCCEEE
Q 030000 24 LIGLQNAGKTSLVNTIATGGYS-EDMI--PTVGFNMRKVTKG-NVTIKLWDLGGQRRFRT-------MWERYCRGVSAIL 92 (184)
Q Consensus 24 v~G~~~~GKstli~~~~~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~-------~~~~~~~~~~~~i 92 (184)
++|++|||||||++++.+.... .... .+........... ...+.+||+||...... ....++.++|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999876544 2222 2323333333333 67899999999765532 3445778999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+|+.+........ +.... ...+.|+++++||+|+..........+............+++++|++++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999887776655 22222 2258999999999999876655544322222233445678999999999999999
Q ss_pred HHHHHHHh
Q 030000 173 IDWLIKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=151.55 Aligned_cols=150 Identities=24% Similarity=0.280 Sum_probs=108.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCc--------cchhHhHHhhccCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ--------RRFRTMWERYCRGVS 89 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~--------~~~~~~~~~~~~~~~ 89 (184)
+|+++|.+|+|||||+|++.+.... ...+.|.......+...+..+.+|||||. +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999976632 22334555666667778889999999996 344455666788999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++++|+|+.++.+... ..+..+++. .++|+++|+||+|+............++. .+++++||++|.|+
T Consensus 81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~-------~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGF-------GEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCC-------CCeEEEeCCcCCCh
Confidence 9999999977544332 333334333 47899999999998654322111111111 15899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030000 170 DAVIDWLIKHSKT 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++++++.+.+..
T Consensus 149 ~~ll~~i~~~l~~ 161 (429)
T TIGR03594 149 GDLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999988754
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=151.32 Aligned_cols=148 Identities=22% Similarity=0.236 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccc--------hhHhHHhhccCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYCRGV 88 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~~~ 88 (184)
++|+++|.+|+|||||++++.+... ....+.|.......+...+..+.+|||||+.. .......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5899999999999999999997763 22223355556666777789999999999876 233345567899
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+.++.+.. ..++..++.. .+.|+++|+||+|+.+.. ....+..... ...++++||++|.|
T Consensus 82 d~il~vvd~~~~~~~~--~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~lg-----~~~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTPA--DEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSLG-----LGEPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCHH--HHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhcC-----CCCCEEEEeeCCCC
Confidence 9999999998754433 2233333333 378999999999975422 1222222111 11378999999999
Q ss_pred HHHHHHHHHHH
Q 030000 169 IDAVIDWLIKH 179 (184)
Q Consensus 169 i~~l~~~i~~~ 179 (184)
++++++++.+.
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=156.05 Aligned_cols=159 Identities=20% Similarity=0.268 Sum_probs=112.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--Ccc--ceeEEEEee--cCEEEEEEEcCCccchhHhHHhhccCCC
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTV--GFNMRKVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVS 89 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~--~~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 89 (184)
..+...|+++|++++|||||++++....+..... .|. +.....+.. .+..+.+|||||++.|..++...+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3567899999999999999999999776654322 222 222222222 4589999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC----ccCCCceeEEEeeecc
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE----SITDREVCCYMISCKD 165 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~ 165 (184)
++++|+|+.+....+.... +..+ ...++|+++++||+|+... ..++..+.+... ......++++++||++
T Consensus 321 iaILVVDA~dGv~~QT~E~-I~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEA-INYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEEECcCCCChhhHHH-HHHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999987544333222 2222 2257899999999998653 223333322111 1112246899999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030000 166 SINIDAVIDWLIKHS 180 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~ 180 (184)
|.|++++++++....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999987643
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=138.18 Aligned_cols=157 Identities=24% Similarity=0.197 Sum_probs=112.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccch--------hHhHHhhcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF--------RTMWERYCR 86 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~--------~~~~~~~~~ 86 (184)
+.--|+++|.|++|||||+|++++.+.. +...+|.......+..++.++.++||||..+- .......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 4567899999999999999999988753 23333444445556677899999999994332 223334578
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++|++++|+|+++.... ...+....++. .+.|+++++||+|...+.. .....+.+... .....++++||++
T Consensus 85 dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~~ 156 (298)
T COG1159 85 DVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPISALK 156 (298)
T ss_pred cCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEeeccc
Confidence 89999999999764332 33333333333 4689999999999887665 34444444322 2223799999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
|.|++.+.+.+.+.++.
T Consensus 157 g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 157 GDNVDTLLEIIKEYLPE 173 (298)
T ss_pred cCCHHHHHHHHHHhCCC
Confidence 99999999999998865
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=127.06 Aligned_cols=155 Identities=26% Similarity=0.374 Sum_probs=123.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC------------CCCCCccceeEEEEeecC-EEEEEEEcCCccchhHhHHhh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS------------EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRFRTMWERY 84 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~------------~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~ 84 (184)
...||+|.|+.++||||+++++...... .....|..+++......+ ..+.+++||||++|..+|..+
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l 88 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEIL 88 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHH
Confidence 5689999999999999999999855421 112246667777766555 889999999999999999999
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
.+.+.++|+++|.+.+..+ .. ..+..++.... .+|++|++||.|+.+....+++.+.+.... ...+++..+|.
T Consensus 89 ~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~a~ 161 (187)
T COG2229 89 SRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEIDAT 161 (187)
T ss_pred hCCcceEEEEEecCCCcch-HH-HHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeeecc
Confidence 9999999999999998888 22 22333333322 299999999999999988888888887653 45689999999
Q ss_pred cCCCHHHHHHHHHHH
Q 030000 165 DSINIDAVIDWLIKH 179 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~ 179 (184)
++++..+.++.+...
T Consensus 162 e~~~~~~~L~~ll~~ 176 (187)
T COG2229 162 EGEGARDQLDVLLLK 176 (187)
T ss_pred cchhHHHHHHHHHhh
Confidence 999999998887765
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=146.40 Aligned_cols=161 Identities=20% Similarity=0.230 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecC-EEEEEEEcCCccc-------hhHhHHhhccCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-VTIKLWDLGGQRR-------FRTMWERYCRGVS 89 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~-------~~~~~~~~~~~~~ 89 (184)
..|+++|.++||||||+|++.+.+.... +.+|.......+...+ ..+.++|+||..+ .......++++++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 4799999999999999999997664322 3346666666676664 5699999999643 1222334688899
Q ss_pred EEEEEEeCC---CCCCHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 90 AILYVVDAA---DRDSVPIARSELHELLMKP-SLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 90 ~~i~v~d~~---~~~~~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++++|+|++ +.+.+.....+...+.... ...+.|+++|+||+|+.......+..+.+... .....+++.+||++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~t 317 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAAS 317 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCC
Confidence 999999987 4556666666666554431 12368999999999996544333222222111 01112589999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
+.|+++++++|.+.++.
T Consensus 318 g~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 318 GLGVKELCWDLMTFIEE 334 (390)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999998865
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=153.90 Aligned_cols=158 Identities=20% Similarity=0.192 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCCC--CCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG---YSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~---~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.|+++|++++|||||++++.+.. +..+. +.|....+..+...+..+.+||+||+++|...+...+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999998633 32222 3344555555666778999999999999999888889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCHHHHHHHhCC--CccC-CCceeEEEeeeccCCCHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSKQALVDQLGL--ESIT-DREVCCYMISCKDSINID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+++....+. ...+. ++.. .++| +++|+||+|+.+....+...+.+.. .... ....+++++||++|+|++
T Consensus 81 VDa~~G~~~qT-~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVMTQT-GEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCcHHH-HHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99987432222 22222 2222 3577 9999999999764432222211111 0011 124689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+..
T Consensus 156 eL~~~L~~l~~~ 167 (581)
T TIGR00475 156 ELKKELKNLLES 167 (581)
T ss_pred hHHHHHHHHHHh
Confidence 999998876653
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=134.34 Aligned_cols=146 Identities=17% Similarity=0.128 Sum_probs=99.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC------------------CCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGY------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 80 (184)
+++|+++|+.++|||||+++|+.... ....+.|.......++..+.++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 58999999999999999999985310 012223444444556677889999999999998888
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCH-H----HHHHHhCCCccCCC
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-Q----ALVDQLGLESITDR 154 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 154 (184)
....+..+|++++|+|+...-... ....+..+ .. .++| +++++||+|+...... + ++.+.+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~-~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLA-RQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 888889999999999997643222 22222322 22 3566 7789999998643221 1 22222222222234
Q ss_pred ceeEEEeeeccCCCH
Q 030000 155 EVCCYMISCKDSINI 169 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~i 169 (184)
.++++++||++|.|+
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 678999999999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=150.93 Aligned_cols=155 Identities=19% Similarity=0.146 Sum_probs=104.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCCCCCccceeEEEEeec
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGY---------------------------------SEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~---------------------------------~~~~~~t~~~~~~~~~~~ 62 (184)
.+++++|+++|++++|||||+++|+...- ....+.|.......++..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 45789999999999999999999983211 012344666666778888
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--H-
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--K- 139 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~- 139 (184)
++.+.+|||||++++.......+..+|++++|+|+++...+.....+...+.... ...|+++++||+|+.+... .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 9999999999999887766666789999999999987322222222222222221 2246999999999965211 1
Q ss_pred ---HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 140 ---QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+++.+.+.........++++++||++|+|+++.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 222222222222223467999999999999873
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-22 Score=152.87 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=110.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------CCCCccceeEEEE-----eecCEEEEEEEcCCcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG--YSE---------------DMIPTVGFNMRKV-----TKGNVTIKLWDLGGQR 75 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~---------------~~~~t~~~~~~~~-----~~~~~~~~~~d~~g~~ 75 (184)
+..+|+++|+.++|||||+.+++... +.. ..+.|+......+ +..++.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 44689999999999999999998531 110 1122322222223 2346899999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH---HHHHHHhCCCccC
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---QALVDQLGLESIT 152 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 152 (184)
+|...+..+++.+|++++|+|+++.........+... .. .++|+++|+||+|+...... +++.+.++.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~-~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~---- 156 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGI---- 156 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCC----
Confidence 9999999999999999999999887665554444332 21 46899999999998643221 223332222
Q ss_pred CCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 153 DREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
....++++||++|.|+++++++|.+.++.
T Consensus 157 -~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 157 -DASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred -CcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 12358999999999999999999988764
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=130.40 Aligned_cols=110 Identities=25% Similarity=0.511 Sum_probs=81.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC----C--CCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS----E--DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~----~--~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
||+|+|++|||||||++++.+..+. . ....+..............+.+||++|++.+...+...+.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988776 1 111233333344445555699999999998888777779999999999
Q ss_pred EeCCCCCCHHHHHHH---HHHHhcCCCCCCCcEEEEEeCCC
Q 030000 95 VDAADRDSVPIARSE---LHELLMKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~iivv~nK~D 132 (184)
||++++.++..+..+ +..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999887554 3333221 24599999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=151.44 Aligned_cols=154 Identities=18% Similarity=0.135 Sum_probs=103.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc--CCCC-------------------------------CCCCCccceeEEEEeec
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT--GGYS-------------------------------EDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~--~~~~-------------------------------~~~~~t~~~~~~~~~~~ 62 (184)
.++.++|+++|+.++|||||+++|+. +... ...+.|.+.....+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45679999999999999999999984 2111 11233555556667778
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccC--H
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALS--K 139 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~ 139 (184)
++.+.+||+||+++|.......+..+|++++|+|+++.++..... .+...+.... ...|+++++||+|+.+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 899999999999998877777788999999999998874331111 1111122221 2357999999999964211 1
Q ss_pred ----HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 140 ----QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 140 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+++.+.+.........++++++||++|+|+.+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222222212222356899999999999986
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-22 Score=142.76 Aligned_cols=175 Identities=20% Similarity=0.184 Sum_probs=127.6
Q ss_pred hHHHHHHHHh-h--hhcc---ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCC
Q 030000 3 FLDSILNWLR-S--LFFK---QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 3 ~~~~~~~~~~-~--~~~~---~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g 73 (184)
|++.+.+.++ . .... ..++|+++|.|++|||||+|++++.+. ....+.|.+.....++..+..+.++||+|
T Consensus 156 Lld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAG 235 (444)
T COG1160 156 LLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAG 235 (444)
T ss_pred HHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCC
Confidence 4566666653 1 1111 469999999999999999999998764 34556788888888999999999999999
Q ss_pred ccchhHh-----------HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cCHH
Q 030000 74 QRRFRTM-----------WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQ 140 (184)
Q Consensus 74 ~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~ 140 (184)
..+-... ....+..++.+++|+|++.+-+.+. .....+... .+.++++++||||+.+. ...+
T Consensus 236 iRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD--~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~ 310 (444)
T COG1160 236 IRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD--LRIAGLIEE---AGRGIVIVVNKWDLVEEDEATME 310 (444)
T ss_pred CCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH--HHHHHHHHH---cCCCeEEEEEccccCCchhhHHH
Confidence 4432221 2234678999999999987644433 222333222 58999999999999875 4455
Q ss_pred HHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 141 ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+..+.+..........+++++||++|.++.++++.+.+....
T Consensus 311 ~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 311 EFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred HHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHH
Confidence 555555554455567799999999999999999999876543
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=154.55 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=105.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccc--------hhHhHHhhcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYCR 86 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 86 (184)
...+|+++|.+++|||||+|++++.... ...+.|........+..+..+.+|||||.+. +......+++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 3478999999999999999999976542 1222333344444566778999999999653 3344455688
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+|++++|+|+++. +......+...+.. .++|+++|+||+|+..... ...+...+. . ...+++||++|
T Consensus 354 ~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg-~----~~~~~iSA~~g 421 (712)
T PRK09518 354 LADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLG-L----GEPYPISAMHG 421 (712)
T ss_pred hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcC-C----CCeEEEECCCC
Confidence 99999999999764 33333333334333 5799999999999854321 112221111 1 12578999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|+.++++++.+.+..
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999988754
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-22 Score=150.32 Aligned_cols=161 Identities=20% Similarity=0.234 Sum_probs=115.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc--CCCCCC----------------CCCccceeEEEEeecCEEEEEEEcCCccchh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT--GGYSED----------------MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~--~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 78 (184)
++..+|+++|+.++|||||+++++. +.+... ...|.......+++.++.+++|||||+.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3456899999999999999999996 333221 1123333344567889999999999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCcc--CC
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESI--TD 153 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~--~~ 153 (184)
..+..+++.+|++++|+|+.+.... .....+..... .++|.++++||+|+..... .+++.+.+..... ..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 9999999999999999999865333 23333443333 4789999999999865332 2333333321111 12
Q ss_pred CceeEEEeeeccCC----------CHHHHHHHHHHHhhh
Q 030000 154 REVCCYMISCKDSI----------NIDAVIDWLIKHSKT 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~----------~i~~l~~~i~~~~~~ 182 (184)
..++++.+||++|. ++..+++.|.+.++.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 45789999999998 589999999988764
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=150.68 Aligned_cols=157 Identities=22% Similarity=0.291 Sum_probs=115.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC--CCCC----------------CCCCccceeEEEEeecCEEEEEEEcCCccchhHhHH
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG--GYSE----------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE 82 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~--~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 82 (184)
+|+++|+.++|||||+++|+.. .+.. ..+.|+......+.+.++.+++|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999852 2211 122344555566888999999999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCcc--CCCcee
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESI--TDREVC 157 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~~ 157 (184)
.+++.+|++++|+|+.+. .......++..... .++|+++++||+|+..... ..+..+.+..... ....++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 999999999999999764 34445555555543 4789999999999865321 1222232221111 123568
Q ss_pred EEEeeeccCC----------CHHHHHHHHHHHhhh
Q 030000 158 CYMISCKDSI----------NIDAVIDWLIKHSKT 182 (184)
Q Consensus 158 ~~~~Sa~~~~----------~i~~l~~~i~~~~~~ 182 (184)
++++||++|. |+..+++.|.+.++.
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 9999999996 799999999998764
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-22 Score=135.89 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---------------------------------CCCCccceeEEEEeecCEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSE---------------------------------DMIPTVGFNMRKVTKGNVTIK 67 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~---------------------------------~~~~t~~~~~~~~~~~~~~~~ 67 (184)
+|+++|++|+|||||+++|+...-.. ....|.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999997432110 122344444555667788999
Q ss_pred EEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHH
Q 030000 68 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQ 145 (184)
Q Consensus 68 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~ 145 (184)
+|||||++++.......++.+|++++|+|+.++..... ... ..+.... ...++++|+||+|+.+... .......
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~-~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRH-SYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHH-HHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999999887777777899999999999986532222 111 1122221 1245788999999864221 1111111
Q ss_pred hCC--CccCCCceeEEEeeeccCCCHHH
Q 030000 146 LGL--ESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 146 ~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+.. ........+++++||++|.|+.+
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 110 11112235699999999999875
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=126.61 Aligned_cols=164 Identities=23% Similarity=0.317 Sum_probs=116.6
Q ss_pred HHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCC----CCCCCCCccceeEEEEeecCEEEEEEEcCC----------cc
Q 030000 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGG----YSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QR 75 (184)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g----------~~ 75 (184)
.+...+......|+++|.+++|||||+|++++.+ ....++.|.-.++..+... +.++|.|| .+
T Consensus 15 ~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 15 DIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred CHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHH
Confidence 3445566678899999999999999999999865 2344455666666665554 78999999 44
Q ss_pred chhHhHHhhccC---CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH----HHHHHhCC
Q 030000 76 RFRTMWERYCRG---VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGL 148 (184)
Q Consensus 76 ~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~----~~~~~~~~ 148 (184)
.+......|++. ..++++++|+..+ ....+..+..++.+ .++|+++++||+|..+..... ...+.+..
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence 455556666643 5789999999554 44445555566555 689999999999998865553 33333333
Q ss_pred CccCCCceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 149 ESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
....... ++..|+.++.|++++.+.|.+.+...
T Consensus 167 ~~~~~~~--~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 167 PPPDDQW--VVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred CCCccce--EEEEecccccCHHHHHHHHHHHhhcc
Confidence 2222211 78899999999999999999887654
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=133.20 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=111.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--------------------CCCCCccceeEEEEeecCEEEEEEEcCCccchhHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS--------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 80 (184)
+|+++|+.|+|||||+++++...-. .....|.......+.+.+.++++|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999853110 01112333455567788999999999999999998
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc---CHHHHHHHhCC---------
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---SKQALVDQLGL--------- 148 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~---~~~~~~~~~~~--------- 148 (184)
+..+++.+|++++|+|+.+.... ....++..... .++|+++++||+|+.... ..+++.+.++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 99999999999999999876443 23333333322 478999999999986421 11222222211
Q ss_pred ---------------------------------Cc--------------cCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 149 ---------------------------------ES--------------ITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 149 ---------------------------------~~--------------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.. ....-+|++..||.++.|+..+++.+.+.++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 00 0123578999999999999999999998876
Q ss_pred h
Q 030000 182 T 182 (184)
Q Consensus 182 ~ 182 (184)
.
T Consensus 236 ~ 236 (237)
T cd04168 236 T 236 (237)
T ss_pred C
Confidence 4
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-22 Score=135.98 Aligned_cols=147 Identities=19% Similarity=0.132 Sum_probs=97.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--C-------------------------------CCCCCccceeEEEEeecCEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGY--S-------------------------------EDMIPTVGFNMRKVTKGNVTIK 67 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~--~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 67 (184)
+|+++|+.++|||||+.+|+...- . ...+.|.......+...+..++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999973110 0 0122244445555777889999
Q ss_pred EEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCC------HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc----c
Q 030000 68 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS------VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA----L 137 (184)
Q Consensus 68 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~ 137 (184)
+||+||+..+...+...++.+|++++|+|+.+... .......+... .. ....|+++++||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccHH
Confidence 99999999888877778889999999999987421 11112222211 11 123689999999999732 1
Q ss_pred CHHHHHHHh----CCCccCCCceeEEEeeeccCCCHH
Q 030000 138 SKQALVDQL----GLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 138 ~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
...++.+.+ .........++++++||++|+|+.
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 122233222 222222345789999999999986
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-22 Score=145.84 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=104.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCCccceeEEE----------------E----ee------cCEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSE-----DMIPTVGFNMRK----------------V----TK------GNVT 65 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~-----~~~~t~~~~~~~----------------~----~~------~~~~ 65 (184)
.++++|+++|++++|||||+++|.+..... ...-|....+.. . +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 457899999999999999999996432111 111122111110 0 01 2467
Q ss_pred EEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHH
Q 030000 66 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ 145 (184)
Q Consensus 66 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~ 145 (184)
+++||+||+++|...+......+|++++|+|++++.........+..+ ... ...|+++++||+|+.+.....+..+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999988888888999999999998643112222222222 221 23468999999999764332222222
Q ss_pred hCC--CccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 146 LGL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 146 ~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
+.. .......++++++||++|+|++++++++...++
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 111 111123568999999999999999999998654
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=141.09 Aligned_cols=149 Identities=22% Similarity=0.209 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccchh---------HhHHhhccC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR---------TMWERYCRG 87 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~~~ 87 (184)
..|+++|.|++|||||+|+|.+.+. ...++.|.+..+...++.+..+.++||+|.+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 5799999999999999999998765 3445678888899999999999999999965322 233345778
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|... ........+..++.. .++|+++|+||+|....+......-.+++. ..+.+||..|.
T Consensus 84 ADvilfvVD~~~--Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGRE--GITPADEEIAKILRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCC--CCCHHHHHHHHHHHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhcc
Confidence 999999999954 344556666666663 579999999999986433222222222322 47999999999
Q ss_pred CHHHHHHHHHHHh
Q 030000 168 NIDAVIDWLIKHS 180 (184)
Q Consensus 168 ~i~~l~~~i~~~~ 180 (184)
|+.++++++.+.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999986
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=148.11 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=104.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEee----------------cCEEEEEEEcCCccchh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFNMRKVTK----------------GNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~----~~t~~~~~~~~~~----------------~~~~~~~~d~~g~~~~~ 78 (184)
..-|+++|++++|||||++++.+..+.... .++.+......+. ....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 456999999999999999999987664332 2334433322211 01238899999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--------------HHHHH-
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------KQALV- 143 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~~~~~- 143 (184)
.++..+++.+|++++|+|+++....+.... +. .+.. .++|+++++||+|+.+.-. .+...
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~-i~-~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEA-LN-ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHH-HH-HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 999999999999999999987433322221 11 2222 4789999999999864110 00000
Q ss_pred ----------HHhC---CCc-------cCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 144 ----------DQLG---LES-------ITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 144 ----------~~~~---~~~-------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
..+. ... ......+++++||++|+|+++++.++....
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0111 110 112357899999999999999999886543
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-23 Score=126.85 Aligned_cols=161 Identities=24% Similarity=0.420 Sum_probs=127.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
-.+||.++|++..|||||+-...++.+.+.+..+.|.+... +......+.+||.+|++++..+.+....++-++++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 46899999999999999999999999888888888866654 45666889999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
++|++.++++..+..|+.+.... +...+|++ ++||.|+.-.-+ .++..........+.-+.+.++||+....|+++
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~-NktAiPil-vGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGL-NKTAIPIL-VGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK 176 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhcc-CCccceEE-eccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence 99999999999999999988543 33556655 599999754322 222222222222222345799999999999999
Q ss_pred HHHHHHHHh
Q 030000 172 VIDWLIKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+|+.+..++
T Consensus 177 IFK~vlAkl 185 (205)
T KOG1673|consen 177 IFKIVLAKL 185 (205)
T ss_pred HHHHHHHHH
Confidence 999988765
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-22 Score=122.85 Aligned_cols=135 Identities=19% Similarity=0.213 Sum_probs=94.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCC----ccchhHhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g----~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
||+++|+.|||||||+++|.+..... ..|....+. =.++|||| ++.+.+.......++|.+++|.|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~--~KTq~i~~~--------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY--KKTQAIEYY--------DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc--CccceeEec--------ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 79999999999999999998655432 223222221 24589999 55666666666779999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc-cccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS-EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
++++.+.-. ..+... .+.|+|-|+||+|+. +..+.+...+.+...... .+|++|+.+|+|++++.++
T Consensus 73 at~~~~~~p--P~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 73 ATEPRSVFP--PGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred CCCCCccCC--chhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHH
Confidence 987644321 111212 368999999999998 344455555555443222 3699999999999999998
Q ss_pred HH
Q 030000 176 LI 177 (184)
Q Consensus 176 i~ 177 (184)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 85
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=144.06 Aligned_cols=164 Identities=18% Similarity=0.190 Sum_probs=104.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC-----CCCCCccceeEEE--------------Eee-------c-----CE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYS-----EDMIPTVGFNMRK--------------VTK-------G-----NV 64 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~-----~~~~~t~~~~~~~--------------~~~-------~-----~~ 64 (184)
.+++++|+++|+.++|||||+.+|.+.-.. .....|....+.. +.. . ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 456799999999999999999999642111 1112233221111 000 0 36
Q ss_pred EEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHH
Q 030000 65 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVD 144 (184)
Q Consensus 65 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~ 144 (184)
.+++||+||++++..........+|++++|+|+.++.........+..+ ... ...|+++|+||+|+.+.....+..+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999998877777777889999999998653111122222222 111 2246899999999976433221112
Q ss_pred HhC-C-CccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 145 QLG-L-ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 145 ~~~-~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.+. . ........+++++||++|+|+++++++|.+.++.
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 111 1 0111235689999999999999999999987653
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-21 Score=131.24 Aligned_cols=151 Identities=22% Similarity=0.243 Sum_probs=102.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecCEEEEEEEcCCccchh-------HhHHhhccCCCEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMWERYCRGVSAI 91 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~~~~ 91 (184)
+|+++|++|+|||||++++.+...... ..+|.......+...+..+++||+||..+.. ......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 789999999999999999997654322 2245556666677788999999999974322 2334578899999
Q ss_pred EEEEeCCCCCC-HHHHHHHHH----------------------------------------HHhcC--------------
Q 030000 92 LYVVDAADRDS-VPIARSELH----------------------------------------ELLMK-------------- 116 (184)
Q Consensus 92 i~v~d~~~~~~-~~~~~~~~~----------------------------------------~~~~~-------------- 116 (184)
++|+|++++.. ...+...+. .+++.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999976542 221211111 01100
Q ss_pred ----------CCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 117 ----------PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 117 ----------~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
....-+|+++|+||+|+.+..+.+. +.. ...++++||++|.|++++++.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~------~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR------QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc------CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0112368999999999865433331 111 124889999999999999999988764
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-21 Score=130.27 Aligned_cols=153 Identities=22% Similarity=0.249 Sum_probs=101.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC----------------Cc-------cceeE-----------------EEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMI----------------PT-------VGFNM-----------------RKVT 60 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~----------------~t-------~~~~~-----------------~~~~ 60 (184)
||+++|+.++|||||++++..+.+..... .| .|+.. ..++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58899999999999999998655433211 01 11110 2233
Q ss_pred ecCEEEEEEEcCCccchhHhHHhhcc--CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 61 KGNVTIKLWDLGGQRRFRTMWERYCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 61 ~~~~~~~~~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
..+..++++|+||+++|.......+. .+|++++|+|+..... .....+..++.. .++|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 45678999999999998776665554 6899999999876533 222222223222 4689999999999866433
Q ss_pred HHH----HHHHhCCCc---------------------cCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 139 KQA----LVDQLGLES---------------------ITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 139 ~~~----~~~~~~~~~---------------------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
..+ +.+.+.... ......++|.+|+.+|+|++++.+.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 322 222332110 1123458999999999999999988753
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=134.91 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=115.4
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHH--------h
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE--------R 83 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~--------~ 83 (184)
..+..++++++|.||+|||||+|.|++.+. ..-.++|.+.-...++..++.+.++||+|.++-....+ .
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 345679999999999999999999997764 34456788888888999999999999999665433222 3
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.++++|.+++|+|++.+.+-..... .. ....+.|+++|.||.|+......... .. ....+++.+|+
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~--~~----~~~~~~~~i~v~NK~DL~~~~~~~~~--~~------~~~~~~i~iSa 358 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLAL--IE----LLPKKKPIIVVLNKADLVSKIELESE--KL------ANGDAIISISA 358 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHH--HH----hcccCCCEEEEEechhcccccccchh--hc------cCCCceEEEEe
Confidence 4788999999999987522222221 11 22357999999999999876553322 11 11226899999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++|+|++.+.+.|.+.+..
T Consensus 359 ~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 359 KTGEGLDALREAIKQLFGK 377 (454)
T ss_pred cCccCHHHHHHHHHHHHhh
Confidence 9999999999999887754
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.9e-21 Score=148.96 Aligned_cols=152 Identities=23% Similarity=0.247 Sum_probs=106.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecCEEEEEEEcCCccchhHh----------HHhh-
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM----------WERY- 84 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----------~~~~- 84 (184)
+.++|+++|++|||||||+|++.+.+.... .+.|.......+...+.++.+||+||..++... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 357899999999999999999997654322 233554555567778899999999998765321 1223
Q ss_pred -ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 85 -CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 85 -~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
...+|++++|+|+++.++.. .+..++.+ .++|+++++||+|+.+........+.+.. ..+.+++++|+
T Consensus 82 ~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~----~LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNL---YLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSA----RLGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchhhH---HHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHH----HhCCCEEEEEe
Confidence 24789999999998754422 23333322 47999999999998754333222222211 11347999999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 030000 164 KDSINIDAVIDWLIKHS 180 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~ 180 (184)
++|+|++++.+.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999998764
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-21 Score=147.06 Aligned_cols=140 Identities=25% Similarity=0.278 Sum_probs=99.0
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccchhHh------HHhhc--cCCCEEEEEE
Q 030000 26 GLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRTM------WERYC--RGVSAILYVV 95 (184)
Q Consensus 26 G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------~~~~~--~~~~~~i~v~ 95 (184)
|++|+|||||+|++.+........+ |.......++..+..+++||+||+.++... ...++ .++|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 8999999999999998776444444 333444456677788999999998876542 23333 4789999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH----HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+++.+.. ..+..+..+ .++|+++++||+|+.+.... +.+.+.+ +.+++++||++|+|+++
T Consensus 81 Dat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l--------g~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL--------GVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc--------CCCEEEEECCCCCCHHH
Confidence 99874322 222222322 47999999999998654332 2223322 24799999999999999
Q ss_pred HHHHHHHHh
Q 030000 172 VIDWLIKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++++.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998753
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=137.22 Aligned_cols=161 Identities=17% Similarity=0.136 Sum_probs=109.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
.+++++|+++|+.++|||||+++|++.... ...+.|.......++..+..+.++|+||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 457899999999999999999999852110 12223444444445566788999999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCHH-----HHHHHhCCCcc
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSKQ-----ALVDQLGLESI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~-----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|+.+..... ....+..+ .. .++| +++++||+|+.+..+.. ++.+.+.....
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~-~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLA-RQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHH-HH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 887777788999999999997643322 22222222 22 3677 67889999987433221 22222221122
Q ss_pred CCCceeEEEeeeccCC--------CHHHHHHHHHHHhh
Q 030000 152 TDREVCCYMISCKDSI--------NIDAVIDWLIKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~--------~i~~l~~~i~~~~~ 181 (184)
.....+++++||++|. ++.++++.+.+.++
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2234689999999983 68888888887764
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=144.04 Aligned_cols=156 Identities=20% Similarity=0.243 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---CCCC--CCCccceeEEEEee-cCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGG---YSED--MIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~---~~~~--~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-|+++|+.++|||||++++.+.. +..+ .+.|....+..+.. .+..+.+||+||+++|.......+.++|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 47899999999999999998532 2222 34555544444433 346789999999999988888889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCHHHHHHHhCCC--ccCCCceeEEEeeeccCCCHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSKQALVDQLGLE--SITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|+++.-..+. ...+ .++.. .++| +++|+||+|+.+....+...+.+... .......+++++||++|+|+++
T Consensus 82 Vda~eg~~~qT-~ehl-~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGVMAQT-REHL-AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCCcHHH-HHHH-HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99976432222 2222 23222 2455 57999999997543332222222110 1112245799999999999999
Q ss_pred HHHHHHHHhh
Q 030000 172 VIDWLIKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
++++|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999987654
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=124.63 Aligned_cols=157 Identities=21% Similarity=0.363 Sum_probs=131.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe---e-cCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT---K-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~---~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..++++++|..|.||||+.++.+.++|...+.+|.|....... + +.+.+..|||+|++.+......++-+..+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 3689999999999999999999999999999999996665422 2 34899999999999999988888888999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
++|++.+-++.+...|...+.+.+. ++||++++||.|...... +.........+...+++.|++++.|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~~-----k~k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARKV-----KAKPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceecccccc-----ccccceeeecccceeEEeecccccccccch
Confidence 9999999999999999999877654 699999999999855431 122223334556689999999999999999
Q ss_pred HHHHHHhh
Q 030000 174 DWLIKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
-|+...+.
T Consensus 162 l~LarKl~ 169 (216)
T KOG0096|consen 162 LWLARKLT 169 (216)
T ss_pred HHHhhhhc
Confidence 99988763
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-20 Score=128.29 Aligned_cols=112 Identities=25% Similarity=0.320 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CCC----------------------CCCCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG--YSE----------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~--~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
-+|+++|++|+|||||+++++... ... ....++......+++.++++++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999998421 000 01122334445678889999999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
+|.......++.+|++++|+|+++..... ...++. ... ..++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~-~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFE-VCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHH-HHH---hcCCCEEEEEECCccCCC
Confidence 98887777889999999999998753322 223332 222 247899999999997553
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=122.16 Aligned_cols=154 Identities=21% Similarity=0.251 Sum_probs=97.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecCEEEEEEEcCCccc----------hhHhHHhhcc--
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQRR----------FRTMWERYCR-- 86 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~----------~~~~~~~~~~-- 86 (184)
.|+++|++|+|||||++.+.++.......++.+... ..+... ..+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 378999999999999999996555444444433222 222222 2889999999432 3333334443
Q ss_pred -CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc-CCCceeEEEeeec
Q 030000 87 -GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCK 164 (184)
Q Consensus 87 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 164 (184)
+++++++++|.....+.... .+..++.. .+.|+++++||+|+.................. .....+++++|++
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDL--EMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHH--HHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 46788999998765332221 12222222 35899999999999654443333222221100 2334578999999
Q ss_pred cCCCHHHHHHHHHHHh
Q 030000 165 DSINIDAVIDWLIKHS 180 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~ 180 (184)
++.++.+++++|.+.+
T Consensus 155 ~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 155 KGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998753
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=136.31 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=106.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC-------CC-----------CCCCCCccceeEEEEeecCEEEEEEEcCCccchh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG-------GY-----------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~-------~~-----------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 78 (184)
+++++|+++|++++|||||+++|++. .+ ....+.|.......++..+.++.++||||+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56799999999999999999999852 00 0012224444444455667889999999999988
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCcccccCH-H----HHHHHhCCCccC
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALSK-Q----ALVDQLGLESIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+.+....+ ....+..+ .. .++|.+ +++||+|+.+.... + ++.+.+......
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~-~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQ-TREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHH-HH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 87778888999999999997643222 22333322 22 367855 57999999743221 1 222222211111
Q ss_pred CCceeEEEeeeccCC----------CHHHHHHHHHHHhh
Q 030000 153 DREVCCYMISCKDSI----------NIDAVIDWLIKHSK 181 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~----------~i~~l~~~i~~~~~ 181 (184)
....+++++||++|. ++.++++.+.+.++
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 235789999999984 67888888877653
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=141.16 Aligned_cols=154 Identities=19% Similarity=0.266 Sum_probs=101.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEee------cC-----E-----EEEEEEcCCccch
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFNMRKVTK------GN-----V-----TIKLWDLGGQRRF 77 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~----~~t~~~~~~~~~~------~~-----~-----~~~~~d~~g~~~~ 77 (184)
++..|+++|++++|||||++++.+....... .++.|........ .. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 4567999999999999999999865543222 1234433222111 00 1 2789999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCC---CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC----------------
Q 030000 78 RTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---------------- 138 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------------- 138 (184)
...+...+..+|++++|+|+++. .++..+. .+.. .++|+++++||+|+...-.
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99888888999999999999873 3333222 2222 4789999999999852100
Q ss_pred --HHH-------HHHHhCCCcc----------CCCceeEEEeeeccCCCHHHHHHHHHHH
Q 030000 139 --KQA-------LVDQLGLESI----------TDREVCCYMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 139 --~~~-------~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
.+. ....+....+ .....+++++||++|+|++++++.+...
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 000 1111111111 1245789999999999999999887653
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=117.56 Aligned_cols=165 Identities=33% Similarity=0.538 Sum_probs=136.9
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.-++.-|++++|..++|||||++.+.+++. ....||.-....++...+.+++-+|.+|+..-+..|..++..++++++.
T Consensus 16 L~kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 16 LYKKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred HhccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 346788999999999999999999865554 3566777777788889999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCC------------CccCCCceeEEEee
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL------------ESITDREVCCYMIS 162 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~S 162 (184)
+|+.+.+.+......+..++......++|+++.+||+|...+...++....+.+ .....+...++-||
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcs 174 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCS 174 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEE
Confidence 999999999999998888877666678999999999999887666555544432 12334577889999
Q ss_pred eccCCCHHHHHHHHHHHh
Q 030000 163 CKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~ 180 (184)
...+.+-.+.|.|+...+
T Consensus 175 i~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 175 IVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEccCccceeeeehhhhc
Confidence 999988888888876643
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-20 Score=135.68 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=104.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC-----C--C-----------CCCCCCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATG-----G--Y-----------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~-----~--~-----------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
.+++++|+++|+.++|||||+++|+.. + . ....+.|.......++..+..+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 356899999999999999999999732 0 0 011334555555556667788999999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCcccccCH-H----HHHHHhCCCcc
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALSK-Q----ALVDQLGLESI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~-~----~~~~~~~~~~~ 151 (184)
..........+|++++|+|+.+....+. ...+..+ .. .++|.+ +++||+|+.+.... + ++.+.+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQT-REHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHH-HH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 8777777788999999999986433322 2222222 22 357755 68999998753321 1 22222222212
Q ss_pred CCCceeEEEeeeccCC--------CHHHHHHHHHHH
Q 030000 152 TDREVCCYMISCKDSI--------NIDAVIDWLIKH 179 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~--------~i~~l~~~i~~~ 179 (184)
....++++++||++|. ++.++++.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 164 PGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred CccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 2234789999999875 345566665544
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=127.24 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=100.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC---------------------CCccceeEEEE-----eecCEEEEEEEcCCc
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDM---------------------IPTVGFNMRKV-----TKGNVTIKLWDLGGQ 74 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~---------------------~~t~~~~~~~~-----~~~~~~~~~~d~~g~ 74 (184)
+|+++|+.|+|||||+++++........ ..+.......+ +...+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999864432210 01111111112 233588999999999
Q ss_pred cchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc-------ccCHHH---HHH
Q 030000 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-------ALSKQA---LVD 144 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-------~~~~~~---~~~ 144 (184)
.++......++..+|++++|+|+.+..+... ..++..... .+.|+++++||+|+.. .+..+. ..+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~ 156 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID 156 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence 9998888888999999999999987766543 223332222 3589999999999752 111111 111
Q ss_pred HhC----CCcc------CCCceeEEEeeeccCCCHH--------HHHHHHHHHhh
Q 030000 145 QLG----LESI------TDREVCCYMISCKDSINID--------AVIDWLIKHSK 181 (184)
Q Consensus 145 ~~~----~~~~------~~~~~~~~~~Sa~~~~~i~--------~l~~~i~~~~~ 181 (184)
.+. .... ......+++.|++.++++. ++++.|.+.++
T Consensus 157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 111 1100 0112347889999998776 77777776654
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=123.54 Aligned_cols=109 Identities=23% Similarity=0.228 Sum_probs=78.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--C----------------CCCCccceeEE--EEe--------ecCEEEEEEEcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS--E----------------DMIPTVGFNMR--KVT--------KGNVTIKLWDLG 72 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~--~----------------~~~~t~~~~~~--~~~--------~~~~~~~~~d~~ 72 (184)
+|+++|+.++|||||+.+|+...-. . ..+-|+..... .+. ...+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999843210 0 01112221111 122 227889999999
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
|+.+|......+++.+|++++|+|+.+...... ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999988765543 222232322 368999999999975
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-20 Score=135.27 Aligned_cols=148 Identities=18% Similarity=0.158 Sum_probs=99.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
.+++++|+++|++++|||||+++|++.... ...+.|.......++.++.++.++||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 356799999999999999999999953110 01222333333445567788999999999998
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCH-H----HHHHHhCCCcc
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-Q----ALVDQLGLESI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|+...-.-+ ....+. .+.. .++| +++++||+|+.+.... + ++.+.+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~-~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TKEHIL-LAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHH-HHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 888888889999999999997643222 222222 2222 3678 7789999999753322 1 22222222112
Q ss_pred CCCceeEEEeeeccCCC
Q 030000 152 TDREVCCYMISCKDSIN 168 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~ 168 (184)
....++++++||.+|+|
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 22357899999999874
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-20 Score=137.63 Aligned_cols=162 Identities=14% Similarity=0.130 Sum_probs=104.5
Q ss_pred HHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCC--CC---------------------------------CCCCc
Q 030000 7 ILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGY--SE---------------------------------DMIPT 51 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~--~~---------------------------------~~~~t 51 (184)
...|+.....+..++|+++|++++|||||+++|+...- .. ..+-|
T Consensus 15 ~~~~~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiT 94 (474)
T PRK05124 15 VEAYLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGIT 94 (474)
T ss_pred HHHHHhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCC
Confidence 34455444557789999999999999999999984321 00 01123
Q ss_pred cceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 030000 52 VGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 131 (184)
+...+..++..+.++.++||||++.|.......+..+|++++|+|+...-.-.....+. +.... ...|+++++||+
T Consensus 95 id~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~l--g~~~iIvvvNKi 170 (474)
T PRK05124 95 IDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLL--GIKHLVVAVNKM 170 (474)
T ss_pred eEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHh--CCCceEEEEEee
Confidence 34444456677889999999999998777777789999999999997643221111111 11111 124789999999
Q ss_pred CcccccC--HHHHHHHhCC--CccC-CCceeEEEeeeccCCCHHHH
Q 030000 132 DKSEALS--KQALVDQLGL--ESIT-DREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 132 D~~~~~~--~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~~i~~l 172 (184)
|+.+... ..+..+.+.. .... ....+++++||++|+|+.++
T Consensus 171 D~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 171 DLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 9874221 2222222211 0011 23568999999999998764
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-20 Score=123.66 Aligned_cols=158 Identities=14% Similarity=0.199 Sum_probs=97.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-----EEEee-cCEEEEEEEcCCccchhHhHHh-----hccC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-----RKVTK-GNVTIKLWDLGGQRRFRTMWER-----YCRG 87 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-----~~~~~-~~~~~~~~d~~g~~~~~~~~~~-----~~~~ 87 (184)
+++|+++|.+|+|||||+|.+++.........+.+... ..+.. ....+.+||+||.......... .+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 37899999999999999999997654432222222110 11111 1236899999997543222222 2567
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---------HHHHHHHh----CCC--ccC
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---------KQALVDQL----GLE--SIT 152 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------~~~~~~~~----~~~--~~~ 152 (184)
+|+++++.+. ++......+...+.. .+.|+++|+||+|+..+.. .++..+.+ ... ...
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8888887542 344555544445444 3689999999999854211 11222111 110 011
Q ss_pred CCceeEEEeeec--cCCCHHHHHHHHHHHhhhc
Q 030000 153 DREVCCYMISCK--DSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 153 ~~~~~~~~~Sa~--~~~~i~~l~~~i~~~~~~~ 183 (184)
....++|.+|+. .+.++..+.+.|...++..
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 234468999998 6899999999999988764
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=134.30 Aligned_cols=115 Identities=23% Similarity=0.294 Sum_probs=82.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc--CCCCC----------------------CCCCccceeEEEEeecCEEEEEEEcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT--GGYSE----------------------DMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~--~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~d~~ 72 (184)
.+..+|+++|++++|||||+++++. +.... ....++......+.+.++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3567899999999999999999973 11000 00112223334577889999999999
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
|+.+|......+++.+|++++|+|+.+.-.. ....++... ...++|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccccc
Confidence 9999988888889999999999999875322 223333322 2257999999999998653
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-19 Score=116.25 Aligned_cols=164 Identities=27% Similarity=0.356 Sum_probs=115.9
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhcc---CCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCR---GVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~---~~~~~ 91 (184)
..+.+-.|+++|+.+||||+|.-++..+... ...+.+..+...+..++-...++|.||+.+.+.....++. ++.++
T Consensus 34 rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~-~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 34 RRSKQNAVLLVGLSDSGKTSLFTQLITGSHR-GTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred hhccCCcEEEEecCCCCceeeeeehhcCCcc-CeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 3445578999999999999999999877433 2233444455556666666899999999999887777776 78999
Q ss_pred EEEEeCC-CCCCHHHHHHHHHHHhcCC--CCCCCcEEEEEeCCCcccccCHHHHHHHhCC-----------------C--
Q 030000 92 LYVVDAA-DRDSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEALSKQALVDQLGL-----------------E-- 149 (184)
Q Consensus 92 i~v~d~~-~~~~~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----------------~-- 149 (184)
|+|+|+. ..........++..++... ..+++|+++++||.|+......+.+.+.+.. .
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 9999974 3444455555555554443 3578999999999999876554333222210 0
Q ss_pred ----------------ccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 150 ----------------SITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 150 ----------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
......+.+.++|++++ +++++.+||.+.+
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 01113567899999999 7999999998763
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=134.77 Aligned_cols=151 Identities=14% Similarity=0.130 Sum_probs=102.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCCCCCccceeEEEEeec
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGY---------------------------------SEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~---------------------------------~~~~~~t~~~~~~~~~~~ 62 (184)
.+++++|+++|+.++|||||+.+|+...- ....+-|+......++..
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35689999999999999999999973110 011222444555567778
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCH-------HHHHHHHHHHhcCCCCCCC-cEEEEEeCCCcc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV-------PIARSELHELLMKPSLSGI-PLLVLGNKIDKS 134 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~iivv~nK~D~~ 134 (184)
+..++++|+||+++|.......+..+|++++|+|+.+. .+ ......+... .. .++ ++++++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-FT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-HH---cCCCcEEEEEEcccCC
Confidence 89999999999999999999999999999999999863 22 1223322222 11 356 578899999976
Q ss_pred cc----cC----HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 135 EA----LS----KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 135 ~~----~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+. .. .+++...+....+....++++++||++|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 21 11 122333332222223357899999999999853
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-19 Score=132.07 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=100.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC------C------------CCCCCCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGG------Y------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~------~------------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
.++.++|+++|++++|||||+++|+... . .....-|.......++..+..+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 3567999999999999999999998411 1 111222333334446667889999999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCH-H----HHHHHhCCCcc
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-Q----ALVDQLGLESI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|+.+....+ ....+..... .++| +++++||+|+.+.++. + ++.+.+....+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 888888888999999999998654333 2333332322 3677 7789999999753321 1 22222222222
Q ss_pred CCCceeEEEeeeccCCC
Q 030000 152 TDREVCCYMISCKDSIN 168 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~ 168 (184)
.....+++++|+.+|.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 23467899999998853
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.5e-19 Score=121.31 Aligned_cols=171 Identities=22% Similarity=0.209 Sum_probs=121.4
Q ss_pred hHHHHHHHHhhhhcc--ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEeecCEEEEEEEcCCccc--
Q 030000 3 FLDSILNWLRSLFFK--QEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRR-- 76 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~-- 76 (184)
+|...+++|+.++.= ..+.|+|.|.||+|||||++.+...+...... +|.++....++.+...++++||||.-+
T Consensus 150 fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP 229 (346)
T COG1084 150 FLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP 229 (346)
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCC
Confidence 566778888877443 46899999999999999999999877654444 588899999999999999999999211
Q ss_pred ------hhHhHHhhccC-CCEEEEEEeCCC--CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhC
Q 030000 77 ------FRTMWERYCRG-VSAILYVVDAAD--RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG 147 (184)
Q Consensus 77 ------~~~~~~~~~~~-~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 147 (184)
....-..+++. .++++|++|++. ..+.+.....+..+... .+.|+++|+||+|....+..++....+.
T Consensus 230 l~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 230 LEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred hHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHH
Confidence 11111122333 568999999974 45666666666666544 3489999999999987666555554433
Q ss_pred CCccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 148 LESITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
.... .....+++..+.+++.+-..+....
T Consensus 307 ~~~~----~~~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 307 EEGG----EEPLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred hhcc----ccccceeeeehhhHHHHHHHHHHHh
Confidence 2211 1245678888888888777776653
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=134.38 Aligned_cols=152 Identities=17% Similarity=0.161 Sum_probs=103.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC--CCC-------------------------------CCCCCccceeEEEEeec
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATG--GYS-------------------------------EDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~--~~~-------------------------------~~~~~t~~~~~~~~~~~ 62 (184)
.+++++|+++|+.++|||||+.+|+.. ... .....|.......++..
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 356799999999999999999999841 100 11223445555667788
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCC---H---HHHHHHHHHHhcCCCCCCCc-EEEEEeCCCccc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS---V---PIARSELHELLMKPSLSGIP-LLVLGNKIDKSE 135 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~ 135 (184)
+..++++|+||+++|.......+..+|++++|+|+..... + ......+... .. .++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCeEEEEEEcccccc
Confidence 8999999999999999988888999999999999976421 0 1222222222 21 3665 678999999532
Q ss_pred ----ccCH----HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 136 ----ALSK----QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 136 ----~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
.... +++.+.+.........++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1222 22333332222223468899999999999864
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-19 Score=133.37 Aligned_cols=149 Identities=23% Similarity=0.308 Sum_probs=112.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccch------hHhHHhhc--cCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRF------RTMWERYC--RGV 88 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~------~~~~~~~~--~~~ 88 (184)
..+|+++|+||+|||||.|++++.+......+ |+.-....+...+.++.++|.||.-.. ......++ .+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 46799999999999999999998877666555 555666668888889999999993221 11222332 457
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc----cCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA----LSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
|++|-|+|+++-++--.+.-.+.+ .+.|++++.|++|..+. .+.+++.+.++. |++++||+
T Consensus 83 D~ivnVvDAtnLeRnLyltlQLlE-------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA~ 147 (653)
T COG0370 83 DLIVNVVDATNLERNLYLTLQLLE-------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVAK 147 (653)
T ss_pred CEEEEEcccchHHHHHHHHHHHHH-------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEee
Confidence 999999999886544444433333 37899999999999875 356777777765 69999999
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+|+|++++.+.+.+..+.
T Consensus 148 ~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 148 RGEGLEELKRAIIELAES 165 (653)
T ss_pred cCCCHHHHHHHHHHhccc
Confidence 999999999999876554
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=130.90 Aligned_cols=159 Identities=17% Similarity=0.125 Sum_probs=107.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEeecCEEEEEEEcCCccchh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 78 (184)
+++++|+++|+.++|||||+++|+..... .....|.......++..+.++.++||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 56899999999999999999999862110 122234444444455677889999999999888
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCcccccCH-H----HHHHHhCCCccC
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALSK-Q----ALVDQLGLESIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+....... ....+..+ .. .++|.+ +++||+|+.+.... + ++.+.+......
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~-~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQ-TREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHH-HH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 87778889999999999997643222 22222222 22 367876 58999999753221 1 222222222222
Q ss_pred CCceeEEEeeeccCC----------CHHHHHHHHHHHh
Q 030000 153 DREVCCYMISCKDSI----------NIDAVIDWLIKHS 180 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~----------~i~~l~~~i~~~~ 180 (184)
....+++++||++|. ++..+++.|.+.+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 345789999999875 5678888887754
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=131.81 Aligned_cols=162 Identities=17% Similarity=0.185 Sum_probs=117.0
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCC-----------------CCCCCCCccceeEEEEeecC---EEEEEEEcCCc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGG-----------------YSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQ 74 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~-----------------~~~~~~~t~~~~~~~~~~~~---~~~~~~d~~g~ 74 (184)
+.++--++.|+-+...|||||..+++... ...+.+-|+......+.+.+ +.++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 33556789999999999999999998321 11223334444444444444 99999999999
Q ss_pred cchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCC
Q 030000 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDR 154 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
-+|.......+.-|+++++|+|++..-.-+....++..+ . .+..+|.|+||+|+..... ++....+.. .+...
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~adp-e~V~~q~~~-lF~~~ 208 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSADP-ERVENQLFE-LFDIP 208 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCCH-HHHHHHHHH-HhcCC
Confidence 999999888899999999999998765555444444433 2 4788999999999976543 232222211 11222
Q ss_pred ceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 155 EVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
..+++.+||++|.|++++++.|+++++..
T Consensus 209 ~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 209 PAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred ccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 33789999999999999999999998764
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-19 Score=138.12 Aligned_cols=115 Identities=24% Similarity=0.190 Sum_probs=89.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC-------------CC-------CCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY-------------SE-------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~-------------~~-------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
.+..+|+|+|+.++|||||+++++...- .. ....|+......+.+.+..+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 4567999999999999999999984210 00 133455666667888899999999999999
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
+...+..+++.+|++++|+|+++.........| ... . ..++|+++++||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~-~---~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQA-D---RYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHH-H---hcCCCEEEEEECCCCCCC
Confidence 998899999999999999999887666544333 222 2 247899999999998753
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=138.48 Aligned_cols=162 Identities=15% Similarity=0.079 Sum_probs=105.2
Q ss_pred HHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------------------------------CCC
Q 030000 6 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSED-----------------------------------MIP 50 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~-----------------------------------~~~ 50 (184)
.+.+++.....++.++|+++|++++|||||+++|+...-... .+-
T Consensus 11 ~~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~ 90 (632)
T PRK05506 11 DILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGI 90 (632)
T ss_pred cHHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCc
Confidence 355666666677889999999999999999999994321100 111
Q ss_pred ccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 030000 51 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 130 (184)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK 130 (184)
|.......++..+.++.++||||+++|.......+..+|++++|+|+......+.... +. +.... ...++++++||
T Consensus 91 Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~-~~~~~--~~~~iivvvNK 166 (632)
T PRK05506 91 TIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SF-IASLL--GIRHVVLAVNK 166 (632)
T ss_pred CceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HH-HHHHh--CCCeEEEEEEe
Confidence 3333344566677889999999999887777777889999999999976432221111 11 11111 23578899999
Q ss_pred CCcccccC--HHHHHHHhCC--CccCCCceeEEEeeeccCCCHHH
Q 030000 131 IDKSEALS--KQALVDQLGL--ESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 131 ~D~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|+.+... .++....+.. ........+++++||++|.|+.+
T Consensus 167 ~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 167 MDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 99864211 2222222210 11122345799999999999874
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-19 Score=130.20 Aligned_cols=162 Identities=19% Similarity=0.155 Sum_probs=107.3
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcC------C------------CCCCCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATG------G------------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~------~------------~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
..+++++|+++|+.++|||||+++|.+. . .....+.|.......++..+.++.++||||+.+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 4457899999999999999999999621 1 011133455555566777788999999999999
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCH-H----HHHHHhCCCc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-Q----ALVDQLGLES 150 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~ 150 (184)
|.......+..+|++++|+|+.+....+ ....+. ++.. .++| +++++||+|+.+.... + ++.+.+....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~-~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHIL-LARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHH-HHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 8887777778899999999997653222 222222 2222 4688 5788999999753222 1 1112222111
Q ss_pred cCCCceeEEEeeec---cCCC-------HHHHHHHHHHHhh
Q 030000 151 ITDREVCCYMISCK---DSIN-------IDAVIDWLIKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~---~~~~-------i~~l~~~i~~~~~ 181 (184)
.....++++.+|+. +|.| +.++++.+.+.++
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 22235688888775 5555 7788888877654
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-19 Score=122.58 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=82.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--C------------------CCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGG--Y------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 80 (184)
+|+++|++++|||||+++++... . ......|.......+.+.+.++++|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 48999999999999999997311 0 012223444555667788999999999999999888
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+...++.+|++++|+|+.+...-.. ...+... . ..++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~-~---~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQA-D---RYNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHH-H---HcCCCEEEEEECCCCCC
Confidence 8999999999999999977543222 2222222 2 24689999999999865
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=131.63 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--C---------------------------------CCCCccceeEEEEeecCE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS--E---------------------------------DMIPTVGFNMRKVTKGNV 64 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~--~---------------------------------~~~~t~~~~~~~~~~~~~ 64 (184)
++|+++|+.++|||||+++|+...-. . ...-|.......++..+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999999732110 0 011234444455667788
Q ss_pred EEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHH
Q 030000 65 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQAL 142 (184)
Q Consensus 65 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~ 142 (184)
++.++||||+++|.......+..+|++++|+|+......+.... +. +.... ...++++++||+|+.+... .++.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~-~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-SY-IASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HH-HHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999998777778899999999999976533222221 11 22221 1346889999999865321 1122
Q ss_pred HHHhCC--CccCCCceeEEEeeeccCCCHHH
Q 030000 143 VDQLGL--ESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 143 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
.+.+.. ........+++++||++|+|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 11122346799999999999875
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=120.88 Aligned_cols=110 Identities=22% Similarity=0.237 Sum_probs=81.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC--------------------CCCCccceeEEEEeecCEEEEEEEcCCccchhHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSE--------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~--------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 80 (184)
+|+++|++|+|||||+++++...... ....+.......+.+.++.+++|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997422110 0122333444556778899999999999988888
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+..+++.+|++++|+|+++......... +... . ..++|.++++||+|...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~~~-~---~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKL-WEFA-D---EAGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHH-H---HcCCCEEEEEECCccCC
Confidence 8888999999999999987655543322 2222 2 24789999999999764
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-19 Score=121.48 Aligned_cols=155 Identities=22% Similarity=0.313 Sum_probs=112.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEeecCEE-EEEEEcCCccc-------hhHhHHhhccC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVT-IKLWDLGGQRR-------FRTMWERYCRG 87 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~-~~~~d~~g~~~-------~~~~~~~~~~~ 87 (184)
....|.++|-|++|||||++++...+...... +|.......+...+.. +.+-|.||.-+ .....-.+++.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 34568999999999999999999766533322 3555555556655544 99999999333 23345566888
Q ss_pred CCEEEEEEeCCCC---CCHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEe
Q 030000 88 VSAILYVVDAADR---DSVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMI 161 (184)
Q Consensus 88 ~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
|+..++|+|++.. ..++.+...+.++-.+ ....+.|.++|+||+|+.+.+.- .++.+.+... .++++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~pv 347 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVPV 347 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEEe
Confidence 9999999999988 7777776666655333 33467899999999999643321 4455554432 48999
Q ss_pred eeccCCCHHHHHHHHHHH
Q 030000 162 SCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~ 179 (184)
||+++++++++++-|.+.
T Consensus 348 sA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 348 SAKSGEGLEELLNGLREL 365 (366)
T ss_pred eeccccchHHHHHHHhhc
Confidence 999999999999988764
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=135.00 Aligned_cols=115 Identities=19% Similarity=0.159 Sum_probs=86.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC--------------------CCCCCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYS--------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
..+..+|+|+|++++|||||+++|+...-. ...+.|.......+.+.+.++++|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 345678999999999999999999732110 012234445566678889999999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
++.......++.+|++++|+|+.+....... ..+... .. .++|+++++||+|+..
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~-~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQA-NR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHH-HH---cCCCEEEEEECCCCCC
Confidence 9888888899999999999999876554432 222222 22 4689999999999865
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=107.42 Aligned_cols=164 Identities=16% Similarity=0.247 Sum_probs=122.1
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeE-EEEeec---CEEEEEEEcCCccch-hHhHHhhcc
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNM-RKVTKG---NVTIKLWDLGGQRRF-RTMWERYCR 86 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~-~~~~~~---~~~~~~~d~~g~~~~-~~~~~~~~~ 86 (184)
..+.+..||+|+|..++|||+++.+++.++... ...+|+.-.+ ..++.. .-.+.++||.|.... ..+-..+++
T Consensus 4 ~kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q 83 (198)
T KOG3883|consen 4 AKMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ 83 (198)
T ss_pred hhhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence 345677999999999999999999999766543 3345665333 333322 245889999997777 456667788
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH-HHHHHhCCCccCCCceeEEEeeecc
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
-+|++++||+..+++||+.....-..+-+......+|+++++||+|+.++.... ...+.+ .....+..+++++.+
T Consensus 84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~W----a~rEkvkl~eVta~d 159 (198)
T KOG3883|consen 84 FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIW----AKREKVKLWEVTAMD 159 (198)
T ss_pred cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHH----HhhhheeEEEEEecc
Confidence 899999999999999999887766666666677789999999999997654321 112222 223345689999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030000 166 SINIDAVIDWLIKHSK 181 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~ 181 (184)
....-+.|.++...+-
T Consensus 160 R~sL~epf~~l~~rl~ 175 (198)
T KOG3883|consen 160 RPSLYEPFTYLASRLH 175 (198)
T ss_pred chhhhhHHHHHHHhcc
Confidence 9999999999887654
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.7e-19 Score=128.58 Aligned_cols=157 Identities=22% Similarity=0.254 Sum_probs=112.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEee---cCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+.+=|+++|+...|||||+..+...+...... -|..+-.+.+.. ....+.++|||||+.|..+...-..-+|.+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 45678999999999999999998776543322 122222233333 4578999999999999999999888999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCC----CccCCCceeEEEeeeccCCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL----ESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|+++.-..+.... +++....++|+++++||+|..+... ......+.. .........++++||++|+|
T Consensus 84 LVVa~dDGv~pQTiEA-----I~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGVMPQTIEA-----INHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCcchhHHHH-----HHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 9999988644443332 2222336899999999999986433 333333322 12234567899999999999
Q ss_pred HHHHHHHHHHHh
Q 030000 169 IDAVIDWLIKHS 180 (184)
Q Consensus 169 i~~l~~~i~~~~ 180 (184)
+++|+..+.-..
T Consensus 158 i~eLL~~ill~a 169 (509)
T COG0532 158 IDELLELILLLA 169 (509)
T ss_pred HHHHHHHHHHHH
Confidence 999999887544
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=129.92 Aligned_cols=114 Identities=20% Similarity=0.282 Sum_probs=81.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc-CCCCCC-----------------------CCCccceeEEEEeecCEEEEEEEcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT-GGYSED-----------------------MIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~-~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~d~~ 72 (184)
.+..+|+++|++++|||||+++++. ...... ...++......+++.++.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999862 111100 0112223334577889999999999
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
|+.+|.......++.+|++++|+|+.+.-. .....++. .... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 999888877778999999999999976422 22233332 3222 5789999999999853
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-20 Score=119.68 Aligned_cols=125 Identities=21% Similarity=0.317 Sum_probs=75.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe---ecCEEEEEEEcCCccchhHhHHh---hccCCCEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT---KGNVTIKLWDLGGQRRFRTMWER---YCRGVSAI 91 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~d~~g~~~~~~~~~~---~~~~~~~~ 91 (184)
+.-.|+++|+.|||||+|..+|..+.......+. .... .+. .....+.++|+||+++.+..... +..++.++
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 3457999999999999999999988654433333 2222 222 24457899999999998875444 47889999
Q ss_pred EEEEeCCC-CCCHHHHHHHHHHHhcC--CCCCCCcEEEEEeCCCcccccCHHHHHH
Q 030000 92 LYVVDAAD-RDSVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSKQALVD 144 (184)
Q Consensus 92 i~v~d~~~-~~~~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~~~~~~~ 144 (184)
|||+|+.. ........+++..++.. .....+|+++++||+|+........+.+
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~ 135 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKK 135 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHH
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHH
Confidence 99999863 22334444444444332 2246899999999999987655444333
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=118.95 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=108.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC---CCccceeEEEEeecCEEEEEEEcCCccc------------hhHhH
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM---IPTVGFNMRKVTKGNVTIKLWDLGGQRR------------FRTMW 81 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~d~~g~~~------------~~~~~ 81 (184)
.+...|+|+|.|++|||||.|.+.+.+..... ..|.-.....+..+..++.++||||.-. +.+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 46789999999999999999999988764332 2344456666788899999999999221 11123
Q ss_pred HhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-----------------HHHHH
Q 030000 82 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----------------QALVD 144 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----------------~~~~~ 144 (184)
...++++|.+++|+|+++....... ..+.....+ .++|-+++.||.|....... .++.+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 3457789999999999864333222 222222222 57899999999997653211 11222
Q ss_pred HhCCCc---------cCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 145 QLGLES---------ITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 145 ~~~~~~---------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.+.... -....-.+|.+||++|+||+++-+++....+.
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 221110 01113358999999999999999999887654
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=129.57 Aligned_cols=163 Identities=17% Similarity=0.186 Sum_probs=105.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCC--CCCc--cceeEEE---------------Eee-------------
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY---SED--MIPT--VGFNMRK---------------VTK------------- 61 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~--~~~t--~~~~~~~---------------~~~------------- 61 (184)
...++|+++|+...|||||+.+|.+... .++ .+-| .|+.... ...
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 3578999999999999999999985322 111 1112 2222110 000
Q ss_pred ---cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 62 ---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 62 ---~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
....+.++|+||++.|.......+..+|++++|+|+.++.......+.+. +.... .-.++++++||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHHH
Confidence 02468999999999998888888889999999999986421122222222 22221 1246899999999975433
Q ss_pred HHHHHHHhCC--CccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 139 KQALVDQLGL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 139 ~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..+..+.+.. ........+++++||++|+|++++++.|.+.++.
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 3222222211 0112246689999999999999999999976653
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-19 Score=127.71 Aligned_cols=154 Identities=21% Similarity=0.151 Sum_probs=107.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc---------------------------------CCCCCCCCCccceeEEEEeec
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT---------------------------------GGYSEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~---------------------------------~~~~~~~~~t~~~~~~~~~~~ 62 (184)
.+.+++++++|+..+|||||+.+|+. .+..++.+-|+......++..
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 35789999999999999999999981 112233445777777778888
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCC-----HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS-----VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
.+.++++|+||+++|-..+.....++|+.|+|+|+.+.+. .....+.-..+.... .-..+|+++||+|+.+-.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccC
Confidence 8999999999999999988888999999999999987631 111222222222222 245688999999998632
Q ss_pred C--H----HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 138 S--K----QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 138 ~--~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
. . .++...+....+.....+|+++|+.+|+|+.+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 1 1 12222111222333467899999999998764
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-18 Score=120.32 Aligned_cols=156 Identities=23% Similarity=0.318 Sum_probs=114.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEeec-CEEEEEEEcCCc---------cchhHhHHhh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKG-NVTIKLWDLGGQ---------RRFRTMWERY 84 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~~d~~g~---------~~~~~~~~~~ 84 (184)
+..+.|.++|-.++|||||+|++.+.... .....|.+.....+... +..+.+-||.|- +.|++....
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE- 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE- 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-
Confidence 35688999999999999999999965543 23346888888887766 588999999992 234444433
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
...+|.++.|+|++++.....+.. ...++...+...+|+++|.||+|+.............. + ..+.+||+
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~-------~-~~v~iSA~ 339 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS-------P-NPVFISAK 339 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC-------C-CeEEEEec
Confidence 457999999999999955444443 34455666667799999999999876554211111111 1 47899999
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+|+|++.+.+.|.+.+..
T Consensus 340 ~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 340 TGEGLDLLRERIIELLSG 357 (411)
T ss_pred cCcCHHHHHHHHHHHhhh
Confidence 999999999999998763
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=118.34 Aligned_cols=160 Identities=19% Similarity=0.260 Sum_probs=100.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEe-ecCEEEEEEEcCCccchhH-----hHHhhccCCCEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVT-KGNVTIKLWDLGGQRRFRT-----MWERYCRGVSAI 91 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~---~~~t~~~~~~~~~-~~~~~~~~~d~~g~~~~~~-----~~~~~~~~~~~~ 91 (184)
||+++|+.+|||||+.+.++.+-.+.+ ..+|.......+. .....+++||+||+..+.. .....++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999999986654433 2367777777775 5678999999999876544 346678999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCcEEEEEeCCCcccccCHHHHHHHh----CC--CccCCCceeEEEeeec
Q 030000 92 LYVVDAADRDSVPIARSELHELLM-KPSLSGIPLLVLGNKIDKSEALSKQALVDQL----GL--ESITDREVCCYMISCK 164 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~Sa~ 164 (184)
|||+|+...+-...+......+.. ....+++.+.++++|+|+..+...++..+.. .. .........++.||..
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~ 160 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIW 160 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TT
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCc
Confidence 999999855544444333332211 1224689999999999997654432222211 11 0111124778999988
Q ss_pred cCCCHHHHHHHHHHHhh
Q 030000 165 DSINIDAVIDWLIKHSK 181 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~ 181 (184)
+ +.+.+.|..|...+.
T Consensus 161 D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 161 D-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp S-THHHHHHHHHHHTTS
T ss_pred C-cHHHHHHHHHHHHHc
Confidence 8 468888888887654
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-18 Score=125.16 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=118.4
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCC----CCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCC
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSE----DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVS 89 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 89 (184)
...+++.-|.+||+...|||||+..|.+..... ...+.+|.....+. .+..+++.|||||..|..+..+-..-+|
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtD 226 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTD 226 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCcccc
Confidence 344567889999999999999999998665421 22344555555555 5588999999999999999999888999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC----ccCCCceeEEEeeecc
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE----SITDREVCCYMISCKD 165 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~ 165 (184)
.+++|+.+.|.-..+... .+++...-++|+++++||+|.... +.++..+.+... +.....++++++||++
T Consensus 227 IvVLVVAadDGVmpQT~E-----aIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 227 IVVLVVAADDGVMPQTLE-----AIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred EEEEEEEccCCccHhHHH-----HHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 999999998864444332 333444468999999999997654 444444444322 2234578899999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030000 166 SINIDAVIDWLIKHS 180 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~ 180 (184)
|+|++.+.+.+.-..
T Consensus 301 g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 301 GENLDLLEEAILLLA 315 (683)
T ss_pred CCChHHHHHHHHHHH
Confidence 999999998876543
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-18 Score=122.46 Aligned_cols=135 Identities=20% Similarity=0.270 Sum_probs=102.9
Q ss_pred CCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC----------CCHHHHHHHHHHHhcCCC
Q 030000 49 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR----------DSVPIARSELHELLMKPS 118 (184)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 118 (184)
.+|.|+....+...+..+.+||++|+...+..|..++.+++++++|+|+++. ..+......+..+++...
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 4577777777888899999999999999999999999999999999999874 456677777777777766
Q ss_pred CCCCcEEEEEeCCCccccc------------------CHHHHHHHhC----C-CccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 119 LSGIPLLVLGNKIDKSEAL------------------SKQALVDQLG----L-ESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 119 ~~~~~iivv~nK~D~~~~~------------------~~~~~~~~~~----~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
..++|+++++||.|+.... +.+...+.+. . .....+.+..+.++|.+-.++..+|+.
T Consensus 226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDA 305 (317)
T ss_pred ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHH
Confidence 6789999999999975421 1111111111 0 001235666788999999999999999
Q ss_pred HHHHhhhc
Q 030000 176 LIKHSKTA 183 (184)
Q Consensus 176 i~~~~~~~ 183 (184)
+.+.+...
T Consensus 306 v~~~i~~~ 313 (317)
T cd00066 306 VKDIILQN 313 (317)
T ss_pred HHHHHHHH
Confidence 99887653
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.3e-18 Score=121.52 Aligned_cols=134 Identities=19% Similarity=0.272 Sum_probs=102.3
Q ss_pred CCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC----------CCHHHHHHHHHHHhcCCC
Q 030000 49 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR----------DSVPIARSELHELLMKPS 118 (184)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 118 (184)
.+|.|+....+...+..+.+||.+|+...+..|..++.+++++++|+|+++. ..+......+..+++...
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 3577777777888889999999999999999999999999999999999863 467777777888887766
Q ss_pred CCCCcEEEEEeCCCccccc-----------------CHHHHHHH----hCCCcc--CCCceeEEEeeeccCCCHHHHHHH
Q 030000 119 LSGIPLLVLGNKIDKSEAL-----------------SKQALVDQ----LGLESI--TDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 119 ~~~~~iivv~nK~D~~~~~-----------------~~~~~~~~----~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
..++|+++++||.|+.... +.....+. +..... ..+.+..+.++|.+-.++..+|+.
T Consensus 249 ~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~ 328 (342)
T smart00275 249 FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDA 328 (342)
T ss_pred ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHH
Confidence 6789999999999986521 11111111 111111 234566788999999999999999
Q ss_pred HHHHhhh
Q 030000 176 LIKHSKT 182 (184)
Q Consensus 176 i~~~~~~ 182 (184)
+.+.+.+
T Consensus 329 v~~~I~~ 335 (342)
T smart00275 329 VKDIILQ 335 (342)
T ss_pred HHHHHHH
Confidence 8887754
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=124.00 Aligned_cols=157 Identities=21% Similarity=0.257 Sum_probs=117.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC-----------------CCCCCCCccce-----eEEEEeecCEEEEEEEcCCc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG-----------------YSEDMIPTVGF-----NMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~-----------------~~~~~~~t~~~-----~~~~~~~~~~~~~~~d~~g~ 74 (184)
++.-+.+++-+-..|||||..+++... ...+.+-|+.. .+..-+++++.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 445678999999999999999998321 22233333332 22222346699999999999
Q ss_pred cchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCcc
Q 030000 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESI 151 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~ 151 (184)
-+|.-...+.+.-|.+.++|+|++..---+.+...+..+- .+.-++.|+||+|++..+. .+++.+.++....
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~ 161 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS 161 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc
Confidence 9998888888888999999999987655555555555442 4788999999999987543 3566666666543
Q ss_pred CCCceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 152 TDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
..+.+|||+|.||+++++.|.+.++..
T Consensus 162 -----dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 162 -----DAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred -----hheeEecccCCCHHHHHHHHHhhCCCC
Confidence 478899999999999999999998764
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=129.02 Aligned_cols=114 Identities=20% Similarity=0.187 Sum_probs=85.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC--------C------------CCCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY--------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~--------~------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
.+..+|+++|++++|||||+++|+...- . ....-|.......+.+.+.+++++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 4567899999999999999999974210 0 1223455566667788899999999999998
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+...+...++.+|++++|+|+.+.-.... ...+... .. .++|.++++||+|+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~-~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA-DK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH-HH---cCCCEEEEEECCCCCC
Confidence 88888889999999999999977543322 2222222 22 4689999999999875
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-18 Score=128.88 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=120.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+.+||+++|+.|+|||||+-++...+++....+-..... ..+.-..+...++|++..++.......-+++++++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 35679999999999999999999998888766554333222 2233445668999999877777777777999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCC--CCCCcEEEEEeCCCcccccCH--HH----HHHHhCCCccCCCceeEEEeeecc
Q 030000 94 VVDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALSK--QA----LVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+|+.+++++++.+...|...++... ..++|+|+|+||+|....... +. +...+... -..++|||++
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei------EtciecSA~~ 159 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI------ETCIECSALT 159 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH------HHHHhhhhhh
Confidence 9999999999999888888877644 357999999999998764432 11 11111111 1378999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030000 166 SINIDAVIDWLIKHS 180 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~ 180 (184)
-.++.++|.+..+.+
T Consensus 160 ~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 160 LANVSELFYYAQKAV 174 (625)
T ss_pred hhhhHhhhhhhhhee
Confidence 999999998877655
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=102.76 Aligned_cols=104 Identities=24% Similarity=0.248 Sum_probs=71.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccch---------hHhHHhhccCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF---------RTMWERYCRGV 88 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~---------~~~~~~~~~~~ 88 (184)
+|+|+|.+|+|||||+|+|++.+. ......|....+..+...+..+.++||||.... .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 689999999999999999997532 223344555655666778888899999995321 11223335889
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 130 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK 130 (184)
|++++|+|+.++ .-......+..+ + .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~-~~~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNP-ITEDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSH-SHHHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHH-h----cCCCEEEEEcC
Confidence 999999997662 112222222323 2 58999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-17 Score=128.13 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=84.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc--CCC------C------------CCCCCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT--GGY------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~--~~~------~------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
..+..+|+++|++++|||||+++|+. +.. . .....|.......+.+.+..++++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 34567899999999999999999973 111 0 122335555556677889999999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
++.......+..+|++++|+|+...-..+. ...+.... . .++|.++++||+|+..
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~-~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQAD-K---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHH-H---cCCCEEEEEECCCCCC
Confidence 888878888999999999999876533332 22222222 2 4689999999999864
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-17 Score=108.82 Aligned_cols=162 Identities=15% Similarity=0.054 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEeecCEEEEEEEcCCccchh-------HhH----Hhh
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMW----ERY 84 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~----~~~ 84 (184)
.+|+++|.+|+|||||+|++++....... +.|...........+..+.++||||..+.. ... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 47999999999999999999977643222 345555555666778899999999944321 111 122
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccCHHHHHHHhC-----CCccCCCceeE
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQALVDQLG-----LESITDREVCC 158 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 158 (184)
..+.|++++|+++.+ .+.. ....+..+..... ..-.++++++|++|.......++...... +.......+..
T Consensus 81 ~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 457899999999876 2222 1222222222111 11257899999999876544333222111 00000111112
Q ss_pred EE-e--eeccCCCHHHHHHHHHHHhhhc
Q 030000 159 YM-I--SCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 159 ~~-~--Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
|. . |+..+.++.++++.|.+.++.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 22 1 2566789999999999988763
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.3e-17 Score=116.67 Aligned_cols=165 Identities=19% Similarity=0.174 Sum_probs=111.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccch-hH--------hHHhh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF-RT--------MWERY 84 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~-~~--------~~~~~ 84 (184)
+..++|+++|+||+|||||+|.|.+.+. .+..+.|.+.....++..++++.+.||+|..+- .. -....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 4679999999999999999999997764 345566777777788899999999999996651 11 12234
Q ss_pred ccCCCEEEEEEeCC--CCCCHHHHHHHHHHHhc-----CCCCCCCcEEEEEeCCCcccccCH-HH-HHHHhCCCccCCCc
Q 030000 85 CRGVSAILYVVDAA--DRDSVPIARSELHELLM-----KPSLSGIPLLVLGNKIDKSEALSK-QA-LVDQLGLESITDRE 155 (184)
Q Consensus 85 ~~~~~~~i~v~d~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~iivv~nK~D~~~~~~~-~~-~~~~~~~~~~~~~~ 155 (184)
++.+|++++|+|+. +-++-..+...+...-. -....+.|++++.||.|+..+-.. .. ....... ......
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence 77899999999993 33333333333333211 122356899999999999775211 11 1111111 111222
Q ss_pred eeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 156 VCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
....++|+++++|++.+.+.+.+.+..
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 235559999999999999999887653
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=117.81 Aligned_cols=161 Identities=20% Similarity=0.290 Sum_probs=119.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC------------------CCCCCCCccceeEEEEeecCEEEEEEEcCCccchhH
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG------------------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 79 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~------------------~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 79 (184)
+--+|+++-+...|||||+..++.+. ...+.+-|+-..-..+.+.++.++++|||||.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 34579999999999999999999432 111222233344445788999999999999999999
Q ss_pred hHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCC---C--ccCCC
Q 030000 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL---E--SITDR 154 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~---~--~~~~~ 154 (184)
..+..+.=.|++++++|+.+. .....+..+.+.+.. +.+.|+|+||+|........-..+.+.+ . .....
T Consensus 84 EVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 999999999999999999865 455566666666665 6777889999998775443222222221 1 12235
Q ss_pred ceeEEEeeeccCC----------CHHHHHHHHHHHhhhc
Q 030000 155 EVCCYMISCKDSI----------NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 155 ~~~~~~~Sa~~~~----------~i~~l~~~i~~~~~~~ 183 (184)
.+|++..|++.|. ++..+|+.|.++++..
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 7789999998775 7889999999998764
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=125.11 Aligned_cols=106 Identities=22% Similarity=0.202 Sum_probs=79.8
Q ss_pred EcCCCCCHHHHHHHHhcCCCC--------------------CCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhh
Q 030000 25 IGLQNAGKTSLVNTIATGGYS--------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERY 84 (184)
Q Consensus 25 ~G~~~~GKstli~~~~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 84 (184)
+|++++|||||+++|+...-. .....|.+.....+.+.++.+++|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999632110 012335556666788899999999999999888888888
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+..+|++++|+|++.......... +.... ..++|+++++||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~-~~~~~----~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETV-WRQAE----KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHH-HHHHH----HcCCCEEEEEECCCCCC
Confidence 999999999999987665543322 22222 24789999999999864
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-16 Score=118.15 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=73.4
Q ss_pred EEEEEEEcCCccc-----hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 64 VTIKLWDLGGQRR-----FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 64 ~~~~~~d~~g~~~-----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
.++.++||||... ........+..+|++++|+|+...-+... ..+...++..+ .+.|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 5688999999643 23345567899999999999976544332 23333333321 1369999999999864222
Q ss_pred --HHHHHHHhCC--CccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 139 --KQALVDQLGL--ESITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 139 --~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
.+.+.+.+.. .........+|++||+.|.|++++++.|..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 3333333211 111223446999999999999999999876
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=111.05 Aligned_cols=153 Identities=22% Similarity=0.217 Sum_probs=109.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEeecCEEEEEEEcCCccchh-------HhHHhhccCCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMWERYCRGVS 89 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~~ 89 (184)
..+|+++|.|++|||||++.+.+.+...... +|.......+++.+.++++.|+||.-... .......++||
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 4789999999999999999999876654433 46666777789999999999999833221 33445688999
Q ss_pred EEEEEEeCCCCCC-HHHHHHHHHHH----------------------------------------hcC------------
Q 030000 90 AILYVVDAADRDS-VPIARSELHEL----------------------------------------LMK------------ 116 (184)
Q Consensus 90 ~~i~v~d~~~~~~-~~~~~~~~~~~----------------------------------------~~~------------ 116 (184)
.+++|+|+..... .+.+...+... ++.
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~ 222 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE 222 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence 9999999985433 33333333221 000
Q ss_pred ------------CCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 117 ------------PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 117 ------------~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.+..-+|.++|.||.|+...+....+.+.. ..+.+||+.+.|++++.+.|.+.+.
T Consensus 223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred CCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 001247889999999997755444444433 4899999999999999999988764
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=111.30 Aligned_cols=166 Identities=17% Similarity=0.250 Sum_probs=108.4
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeE-EEEeecCEEEEEEEcCCccc-------hhHhHHh
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNM-RKVTKGNVTIKLWDLGGQRR-------FRTMWER 83 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~d~~g~~~-------~~~~~~~ 83 (184)
+....+++|+++|..|+|||||||+++.++..+.. +.+..+.. .......-.+.+||+||..+ ++.....
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHH
Confidence 34567899999999999999999999965543322 11221111 11223345689999999554 5666777
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc------------CHHHHHH-HhC-CC
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL------------SKQALVD-QLG-LE 149 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~-~~~-~~ 149 (184)
++...|.+++++++.++.--.....+..-+... .+.++++++|.+|...+. ...++.+ +.. ..
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~---~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRDVIILG---LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHHHHHHHHhc---cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 889999999999998765443333333323222 348999999999987652 0111111 110 00
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.....-.|++..|...++|+.++...++..++.
T Consensus 191 ~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 191 RLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 011123478889999999999999999988764
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.9e-20 Score=116.42 Aligned_cols=160 Identities=21% Similarity=0.262 Sum_probs=123.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeec---CEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG---NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
-++++|+|..|+|||+++.+.+...+...+..|+|.... ...+. -+.+.+||.+||+++..+..-+++.+++.++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i 104 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI 104 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence 489999999999999999999999888888888885443 23333 3567899999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCC---CCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 94 VVDAADRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
|||.++..+|+....|...+-... ...-+|+++..||||...... ...+.+....... .--+++|+|.+.
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf----~gwtets~Kenk 180 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF----EGWTETSAKENK 180 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc----cceeeecccccc
Confidence 999999999999999988774432 234478899999999754221 1222222222211 136899999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
||+|+-..+.+++.-
T Consensus 181 ni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 181 NIPEAQRELVEKILV 195 (229)
T ss_pred ChhHHHHHHHHHHHh
Confidence 999999999888753
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-16 Score=110.80 Aligned_cols=155 Identities=23% Similarity=0.307 Sum_probs=96.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC------CCCccceeEEEE-------------------e-ecCEEEEEEEcCCc-
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSED------MIPTVGFNMRKV-------------------T-KGNVTIKLWDLGGQ- 74 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~------~~~t~~~~~~~~-------------------~-~~~~~~~~~d~~g~- 74 (184)
|+++|.+++|||||++++.+...... ..++.|...... + .....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998765321 223333332210 1 13367999999997
Q ss_pred ---cchhHhHH---hhccCCCEEEEEEeCCCC-------------CCHHHH---HHHHHH--------------------
Q 030000 75 ---RRFRTMWE---RYCRGVSAILYVVDAADR-------------DSVPIA---RSELHE-------------------- 112 (184)
Q Consensus 75 ---~~~~~~~~---~~~~~~~~~i~v~d~~~~-------------~~~~~~---~~~~~~-------------------- 112 (184)
+++..... ..++++|++++|+|+... +....+ ...+..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44444333 358999999999999631 111111 110000
Q ss_pred ------------------------HhcC-C--------------------CCCCCcEEEEEeCCCcccccCHHHHHHHhC
Q 030000 113 ------------------------LLMK-P--------------------SLSGIPLLVLGNKIDKSEALSKQALVDQLG 147 (184)
Q Consensus 113 ------------------------~~~~-~--------------------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 147 (184)
.+.. . ....+|+++++||+|+..... ..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~---~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN---NISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH---HHHHHH
Confidence 0000 0 123579999999999754322 222222
Q ss_pred CCccCCCceeEEEeeeccCCCHHHHHH-HHHHHhhh
Q 030000 148 LESITDREVCCYMISCKDSINIDAVID-WLIKHSKT 182 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~-~i~~~~~~ 182 (184)
. ......++.+||+.+.++.++.+ .+.+.++.
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 1 11244699999999999999998 68888754
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=110.79 Aligned_cols=161 Identities=23% Similarity=0.238 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEee-cCEEEEEEEcCCccc-------hhHhHHhhccCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTK-GNVTIKLWDLGGQRR-------FRTMWERYCRGVS 89 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~-~~~~~~~~d~~g~~~-------~~~~~~~~~~~~~ 89 (184)
..|.++|-|++|||||++.+...+...... +|.-.+...++. ..-.+.+-|.||.-+ .....-.++++|.
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 457899999999999999999766543332 455566666664 445699999999433 2223445678899
Q ss_pred EEEEEEeCCCCCC---HHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCccc-ccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 90 AILYVVDAADRDS---VPIARSELHELLMK-PSLSGIPLLVLGNKIDKSE-ALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~~~~---~~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+++.|+|++..+. .+.......++..+ ....+.|.++|+||+|+.. .+..+++.+.+..... ....++ +|+.
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~--~~~~~~-ISa~ 316 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG--WEVFYL-ISAL 316 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC--CCccee-eehh
Confidence 9999999986543 44444444444333 3345789999999999544 4455555555543211 111222 9999
Q ss_pred cCCCHHHHHHHHHHHhhhc
Q 030000 165 DSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~~ 183 (184)
+++|++++...+.+.+.+.
T Consensus 317 t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 317 TREGLDELLRALAELLEET 335 (369)
T ss_pred cccCHHHHHHHHHHHHHHh
Confidence 9999999999998887654
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-16 Score=109.76 Aligned_cols=115 Identities=16% Similarity=0.253 Sum_probs=72.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCccceeEE--EEeecC--EEEEEEEcCCccchhH---hH
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSED----------MIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRT---MW 81 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~----------~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~---~~ 81 (184)
.++|+++|++|+|||||+|++++..+... ..+|...... .+...+ +.+.+|||||...... .|
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999998876543 2334443332 233333 6799999999322110 00
Q ss_pred ------------------H-----hhcc--CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 82 ------------------E-----RYCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 82 ------------------~-----~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
. ..+. ++|+++|+++.+.. .+......+...+. .++|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCCH
Confidence 0 1122 36778888887642 23333222222322 26899999999999664
Q ss_pred cC
Q 030000 137 LS 138 (184)
Q Consensus 137 ~~ 138 (184)
.+
T Consensus 159 ~e 160 (276)
T cd01850 159 EE 160 (276)
T ss_pred HH
Confidence 43
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=95.75 Aligned_cols=138 Identities=17% Similarity=0.184 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCC----ccchhHhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g----~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
|++++|..|+|||||.+.+.+...... .|....+. + =-.+|||| +..+.+.......++|++++|-.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQAve~~-----d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQAVEFN-----D--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--ccceeecc-----C--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 689999999999999999975543221 22221111 0 11478998 44454545556788999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
++++.+.-.-. +. .....|+|-+++|+|+.+..+.....+.+.... .-++|.+|+.++.|++++++++
T Consensus 74 and~~s~f~p~--f~------~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 74 ANDPESRFPPG--FL------DIGVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ccCccccCCcc--cc------cccccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccHHHHHHHH
Confidence 98875432111 11 123566999999999998666655555554322 2369999999999999999998
Q ss_pred HHH
Q 030000 177 IKH 179 (184)
Q Consensus 177 ~~~ 179 (184)
...
T Consensus 142 ~~~ 144 (148)
T COG4917 142 ASL 144 (148)
T ss_pred Hhh
Confidence 754
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-17 Score=112.27 Aligned_cols=119 Identities=18% Similarity=0.103 Sum_probs=76.6
Q ss_pred EEEEEEEcCCccchh---HhHHh---hccC--CCEEEEEEeCCCCCCHHHHHHHHH-HHhcCCCCCCCcEEEEEeCCCcc
Q 030000 64 VTIKLWDLGGQRRFR---TMWER---YCRG--VSAILYVVDAADRDSVPIARSELH-ELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~---~~~~~---~~~~--~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
..+.+||+||+.+.. ..+.. .+.. .+++++++|+.............. ...... ..++|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence 468999999976643 22222 2333 789999999976554433322211 111111 1479999999999998
Q ss_pred cccCHHHHHHHhCC--------Cc-----------------cCCCceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 135 EALSKQALVDQLGL--------ES-----------------ITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 135 ~~~~~~~~~~~~~~--------~~-----------------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
+..+.++..+.+.. .. ......+++++|+++++|+++++++|.+.++..
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 76655554443331 00 001235789999999999999999999887643
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.6e-17 Score=117.07 Aligned_cols=178 Identities=20% Similarity=0.158 Sum_probs=121.2
Q ss_pred hHHHHHHHHhhhh--ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEeecCEEEEEEEcCCccc--
Q 030000 3 FLDSILNWLRSLF--FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRR-- 76 (184)
Q Consensus 3 ~~~~~~~~~~~~~--~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~-- 76 (184)
.|++.++++.+++ ..+.-+++++|-+++|||||++.+........+. +|.+.....+...-..+++.||||.-+
T Consensus 150 yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~p 229 (620)
T KOG1490|consen 150 YLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRP 229 (620)
T ss_pred HHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcc
Confidence 5788899998886 5577889999999999999999998766544333 455666677777778899999999221
Q ss_pred --hhHhHH----hhcc-CCCEEEEEEeCCC--CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhC
Q 030000 77 --FRTMWE----RYCR-GVSAILYVVDAAD--RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG 147 (184)
Q Consensus 77 --~~~~~~----~~~~-~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 147 (184)
.+..+. .++. -..+|+|+.|++. ..+.......+..+- ....+.|.|+|+||+|+...++..+-.+.+-
T Consensus 230 lEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIK--pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll 307 (620)
T KOG1490|consen 230 EEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIK--PLFANKVTILVLNKIDAMRPEDLDQKNQELL 307 (620)
T ss_pred hhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhH--HHhcCCceEEEeecccccCccccCHHHHHHH
Confidence 112111 1222 2346899999975 445555555555442 1224789999999999987766533332222
Q ss_pred CCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 148 LESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
........++++++|..+.+|+.++-+...+.+..
T Consensus 308 ~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 308 QTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred HHHHhccCceEEEecccchhceeeHHHHHHHHHHH
Confidence 11122334689999999999998877776666544
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-16 Score=108.96 Aligned_cols=136 Identities=18% Similarity=0.290 Sum_probs=102.9
Q ss_pred CCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC----------CHHHHHHHHHHHhcCC
Q 030000 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD----------SVPIARSELHELLMKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~ 117 (184)
..+|.|+....+..++..+.+.|.+||..-+.-|...+.+++++++|+++++.+ ........+..+.+..
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 457889999999999999999999999999999999999999999999998532 3444566667777777
Q ss_pred CCCCCcEEEEEeCCCccccc-----------------CHHHHHHHhC----C-CccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 118 SLSGIPLLVLGNKIDKSEAL-----------------SKQALVDQLG----L-ESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 118 ~~~~~~iivv~nK~D~~~~~-----------------~~~~~~~~~~----~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
.-.+.++|+++||.|+.++. ..++..+.+. . .....+....+.++|.+-.+|+.+|+.
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 77889999999999987631 1111111111 1 111114556777899999999999999
Q ss_pred HHHHhhhc
Q 030000 176 LIKHSKTA 183 (184)
Q Consensus 176 i~~~~~~~ 183 (184)
+.+.+...
T Consensus 339 v~d~Ii~~ 346 (354)
T KOG0082|consen 339 VTDTIIQN 346 (354)
T ss_pred HHHHHHHH
Confidence 99887653
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8e-16 Score=109.77 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=69.8
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-- 139 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-- 139 (184)
.++.+.++||+|...-... ....+|.++++.+....+.+...... .+ ....++|+||+|+.+....
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~------E~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IM------ELADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hh------hhhheEEeehhcccchhHHHH
Confidence 4588999999997633322 35569999999875444344332221 11 2224899999998765433
Q ss_pred --HHHHHHhCCCccC--CCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 140 --QALVDQLGLESIT--DREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 140 --~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.++.+.+...... ....+++.+||++|.|++++++.|.++.+
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3333333332111 12257999999999999999999998765
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-16 Score=106.06 Aligned_cols=117 Identities=19% Similarity=0.127 Sum_probs=79.5
Q ss_pred CEEEEEEEcCCccchhHhH------Hhhc--cCCCEEEEEEeCC---CCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 030000 63 NVTIKLWDLGGQRRFRTMW------ERYC--RGVSAILYVVDAA---DRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~------~~~~--~~~~~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 131 (184)
..++.++|||||-+..... ...+ ...-+++|++|.. ++.+|.....+...++-+ .+.|++++.||+
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecc
Confidence 3668999999987643211 1112 2345788999964 566777777777777655 679999999999
Q ss_pred CcccccCHHH-------HHHHhCC--Ccc--------------CCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 132 DKSEALSKQA-------LVDQLGL--ESI--------------TDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 132 D~~~~~~~~~-------~~~~~~~--~~~--------------~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
|+....-..+ +.+.+.. ..+ ..+....+.+|+.+|+|.++.|..+.+.+..
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 9987654322 2222221 000 0145678999999999999999999887653
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=105.40 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEe------------------------ecCEEEEEEEcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVT------------------------KGNVTIKLWDLGG 73 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~------------------------~~~~~~~~~d~~g 73 (184)
++|+++|.+++|||||+|++.+........ .|......... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999877643222 23332222211 1236689999999
Q ss_pred cc----chhHh---HHhhccCCCEEEEEEeCC
Q 030000 74 QR----RFRTM---WERYCRGVSAILYVVDAA 98 (184)
Q Consensus 74 ~~----~~~~~---~~~~~~~~~~~i~v~d~~ 98 (184)
.. ..... .-..++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 23232 333488999999999996
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-15 Score=116.19 Aligned_cols=113 Identities=20% Similarity=0.241 Sum_probs=80.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC---------------CCCC---CCCCccceeE----EEEeecCEEEEEEEcCCcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG---------------GYSE---DMIPTVGFNM----RKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~---------------~~~~---~~~~t~~~~~----~~~~~~~~~~~~~d~~g~~ 75 (184)
+..+|+++|+.++|||||+++++.. ++.. ....|+.... ..+++.++.+++|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4579999999999999999999742 1111 1222433222 2356778999999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+|.......++.+|++++|+|+.+.-.... ...+..... .+.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 998888889999999999999976433222 222222222 4678899999999854
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=104.52 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=103.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC-----------------------------------CCCCCCCccceeEEEEee
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG-----------------------------------YSEDMIPTVGFNMRKVTK 61 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~-----------------------------------~~~~~~~t~~~~~~~~~~ 61 (184)
+...+++-+|+..-||||||.+|+.+. .+.+++-|++..+..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456899999999999999999999211 123355577788888888
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--H
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--K 139 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~ 139 (184)
...+|.+-|||||++|-..+..-..-||+.|+++|+-. ......+--..+.... .-..+++++||+|+.+-.. .
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHH
Confidence 89999999999999999988888888999999999943 3333322222222221 2345788899999977432 2
Q ss_pred HHHHHHhCC--CccCCCceeEEEeeeccCCCHH
Q 030000 140 QALVDQLGL--ESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 140 ~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+++.+.+.. ..+......++++||..|+|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 232222211 1122334479999999999875
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=114.62 Aligned_cols=145 Identities=18% Similarity=0.193 Sum_probs=92.3
Q ss_pred CHHHHHHHHhcCCCCCCC----CCccceeEEEEee----------------cCEEEEEEEcCCccchhHhHHhhccCCCE
Q 030000 31 GKTSLVNTIATGGYSEDM----IPTVGFNMRKVTK----------------GNVTIKLWDLGGQRRFRTMWERYCRGVSA 90 (184)
Q Consensus 31 GKstli~~~~~~~~~~~~----~~t~~~~~~~~~~----------------~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (184)
+||||+.++.+.+..... .+.+|......+. ....+.+|||||++.|.......+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 399999999977664322 2233433322221 01238999999999998888888888999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC------------------HHHHHHH-------
Q 030000 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS------------------KQALVDQ------- 145 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~------------------~~~~~~~------- 145 (184)
+++|+|+++.-..+... .+ ..+.. .++|+++++||+|+..... .+++.+.
T Consensus 553 vlLVVDa~~Gi~~qT~e-~I-~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~ 627 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIE-AI-NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK 627 (1049)
T ss_pred EEEEEECcccCCHhHHH-HH-HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 99999998632222111 11 22222 3689999999999864211 1111111
Q ss_pred ---hCCC-------ccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 146 ---LGLE-------SITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 146 ---~~~~-------~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
.+.. .-.....+++++||++|+|+++++.++....
T Consensus 628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 1110 0113467899999999999999999886543
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=98.52 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=85.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.....|+++|.+|+|||||++.+.............|. .......+.++.++|+||.. .......+.+|++++++|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI---NAMIDIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEe
Confidence 45677999999999999999999854222111122221 12233467889999999864 223344678999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcE-EEEEeCCCcccccC-HHHHHHHhCCCc--cCCCceeEEEeeeccCC
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPL-LVLGNKIDKSEALS-KQALVDQLGLES--ITDREVCCYMISCKDSI 167 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~ 167 (184)
+........ ..+...+.. .+.|. ++++||+|+.+... .++..+.+.... ....+.+++.+||+++.
T Consensus 113 a~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 113 ASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred cCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 976443322 222223322 35674 45999999874322 222222221100 01234589999998874
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=100.87 Aligned_cols=164 Identities=21% Similarity=0.222 Sum_probs=111.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCC--cc--ceeEE------------------EEe------ecCEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG---YSEDMIP--TV--GFNMR------------------KVT------KGNVT 65 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~---~~~~~~~--t~--~~~~~------------------~~~------~~~~~ 65 (184)
...++|.++|+...|||||..++.+-- +..+... |+ |+... ... .--..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 468999999999999999999997311 1000000 00 00000 000 01145
Q ss_pred EEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHH
Q 030000 66 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ 145 (184)
Q Consensus 66 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~ 145 (184)
+.++|.||++-....+-+-..-.|+.++|++++.+.......+.+..+ ... .-..++++-||+|+...+...+..+.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHHHHHHHH
Confidence 889999999988776666666679999999999887777776665544 221 23568899999999876554333333
Q ss_pred hCC--CccCCCceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 146 LGL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 146 ~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
+.. ...-..+.|++++||..+.||+.++++|.+.++..
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 321 12223567899999999999999999999988753
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-14 Score=96.83 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=74.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEeecCEEEEEEEcCCccchh--H--------hHH
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--T--------MWE 82 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~--~--------~~~ 82 (184)
....++|+++|.+|+|||||+|++++...... ...|...........+..+.+|||||..... . ...
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 35679999999999999999999998764322 1234444444455677889999999965431 0 122
Q ss_pred hhcc--CCCEEEEEEeCCCCCCHHHHH-HHHHHHhcCCC-CCCCcEEEEEeCCCccccc
Q 030000 83 RYCR--GVSAILYVVDAADRDSVPIAR-SELHELLMKPS-LSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 83 ~~~~--~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~ 137 (184)
.++. ..+++++|..++.. ++.... ..+..+....+ .--.++++|.||+|...+.
T Consensus 108 ~~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 2332 56788888766533 222222 22222222111 1124699999999987543
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-15 Score=110.31 Aligned_cols=156 Identities=19% Similarity=0.135 Sum_probs=106.3
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc---------------------------------CCCCCCCCCccceeEEEEee
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT---------------------------------GGYSEDMIPTVGFNMRKVTK 61 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~---------------------------------~~~~~~~~~t~~~~~~~~~~ 61 (184)
..+.++..+|+|+..+|||||+.+++. .+-.+..+-|+......++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 334678999999999999999999981 11222333455555556777
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC---CHH--HHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SVP--IARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
....+++.|+||+..|-..+.....++|+.++|+|++... .|+ ...+....+++..+ -..++|++||.|+..-
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSW 330 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCc
Confidence 7889999999999999998888889999999999997421 111 11223333444433 4568999999999763
Q ss_pred c--CHHHHHHHhC-----CCccCCCceeEEEeeeccCCCHHHH
Q 030000 137 L--SKQALVDQLG-----LESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 137 ~--~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
. ..+++...+. ........+.+++||+.+|+|+...
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 2 2233332222 2223345567999999999987644
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=98.39 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEeecCEEEEEEEcCCccc-------hhHhHH----hh
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQRR-------FRTMWE----RY 84 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~~~~----~~ 84 (184)
.+|+++|..||||||++|.+++....... ..|...........+..+.++||||..+ ....+. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 48999999999999999999987654332 2355555566678889999999999322 111111 22
Q ss_pred ccCCCEEEEEEeCCCCCCHHH--HHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHH-----hC-CCccCCCce
Q 030000 85 CRGVSAILYVVDAADRDSVPI--ARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ-----LG-LESITDREV 156 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~-----~~-~~~~~~~~~ 156 (184)
..+.+++++|++.... +... .-.++..++... --..++|++|..|.......+++.+. +. +......
T Consensus 81 ~~g~ha~llVi~~~r~-t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~-- 155 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRF-TEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG-- 155 (212)
T ss_dssp TT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred cCCCeEEEEEEecCcc-hHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC--
Confidence 4568999999998722 2111 122222222211 12358889999998776654333331 11 1111112
Q ss_pred eEEEeeec------cCCCHHHHHHHHHHHhhhc
Q 030000 157 CCYMISCK------DSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 157 ~~~~~Sa~------~~~~i~~l~~~i~~~~~~~ 183 (184)
.++..+.+ ....+.++++.|-+.+..+
T Consensus 156 R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 156 RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 24433333 3456888998888887765
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-15 Score=104.99 Aligned_cols=116 Identities=18% Similarity=0.108 Sum_probs=60.9
Q ss_pred EEEEEEcCCccchhHhHHhhc--------cCCCEEEEEEeCCCCCCHHHHHHH-HHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 65 TIKLWDLGGQRRFRTMWERYC--------RGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 65 ~~~~~d~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
.+.++|||||.++...+...- ...-++++++|+....+....... +... ...-..+.|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~-s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSL-SIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHH-HHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHH-HHHhhCCCCEEEeeeccCccc
Confidence 689999999998766555432 234478999998765553332221 1111 101114799999999999977
Q ss_pred cc---------CH-----------HHHHHHhCCCccCCCce-eEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 136 AL---------SK-----------QALVDQLGLESITDREV-CCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 136 ~~---------~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.. +. ..+.+.+...-...... .++.+|+++++++.+++..|-+.++
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 22 00 11111111101111223 6999999999999999999988764
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-14 Score=111.92 Aligned_cols=112 Identities=23% Similarity=0.240 Sum_probs=77.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC--CC----------------CCCccceeEEE----EeecCEEEEEEEcCCcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS--ED----------------MIPTVGFNMRK----VTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~----------------~~~t~~~~~~~----~~~~~~~~~~~d~~g~~ 75 (184)
+..+|+++|+.++|||||+.+++...-. .. ..-|+...... ....++.++++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4567999999999999999999842210 00 00122211111 23357889999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
+|.......++.+|++++|+|+...-... ....+..... .+.|.++++||+|..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhh
Confidence 99888888999999999999987653332 2233333222 256789999999975
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=104.39 Aligned_cols=160 Identities=16% Similarity=0.238 Sum_probs=84.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccce-----eEEEEeecC-EEEEEEEcCCccchhHhHHhh-----
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF-----NMRKVTKGN-VTIKLWDLGGQRRFRTMWERY----- 84 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~-----~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~----- 84 (184)
.+..++|+|+|.+|+|||||||++.+-+.........|. ....+.... ..+.+||.||...-......|
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 346799999999999999999999864433222222221 112233332 349999999954322222222
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCc--ccc-------cC----HHHH----HHHhC
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK--SEA-------LS----KQAL----VDQLG 147 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~--~~~-------~~----~~~~----~~~~~ 147 (184)
+...|.+|++.+- .|....-++...+.. .++|+.+|-||+|. .+. .. .+++ .+.+.
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 4567988887763 455555555555444 57999999999996 111 01 1221 22222
Q ss_pred CCccCCCceeEEEeeecc--CCCHHHHHHHHHHHhhhcC
Q 030000 148 LESITDREVCCYMISCKD--SINIDAVIDWLIKHSKTAK 184 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~--~~~i~~l~~~i~~~~~~~~ 184 (184)
. ......++|.+|..+ ..++..+.+.+.+.++..|
T Consensus 185 k--~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 185 K--AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp C--TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred H--cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 1 222445688898865 4578899999988877653
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-14 Score=94.85 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=64.4
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cCHHH
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQA 141 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~ 141 (184)
....++++.|.......... + ++.+|.|+|+.+...... .....+ ...-++++||+|+.+. .....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~-l--~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE-L--ADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccchh-h--hCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHH
Confidence 56677888884322222111 1 577999999976554321 100111 1223889999999753 33444
Q ss_pred HHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 142 LVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
..+..... ....+++++|+++|+|++++++++.+.+.
T Consensus 160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44444322 23467999999999999999999998764
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-14 Score=113.22 Aligned_cols=113 Identities=21% Similarity=0.197 Sum_probs=79.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC---C---------------CCCccceeEEEEeec----------CEEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSE---D---------------MIPTVGFNMRKVTKG----------NVTIKL 68 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~---------------~~~t~~~~~~~~~~~----------~~~~~~ 68 (184)
++..+|+++|+.++|||||+++|+...-.. . ...|+......+.+. ++.+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 445689999999999999999998522100 0 011111111122222 678999
Q ss_pred EEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 69 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 69 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
+||||+.+|.......++.+|++++|+|+.+.-.... ...+..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999999888889999999999999987544332 333333333 468999999999986
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-13 Score=94.96 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=70.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCC--ccceeEEEEeecCEEEEEEEcCCccchhHh-------HHhhc-
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSE-DMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRTM-------WERYC- 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-------~~~~~- 85 (184)
.+.++|+++|.+|+||||++|++++..... .... +...........+..+.++||||..+.... ...++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 467999999999999999999999766421 1111 222222333456789999999996643221 11112
Q ss_pred -cCCCEEEEEEeCCCCCCHHHH-HHHHHHHhcCCC-CCCCcEEEEEeCCCccc
Q 030000 86 -RGVSAILYVVDAADRDSVPIA-RSELHELLMKPS-LSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 86 -~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~~iivv~nK~D~~~ 135 (184)
...|++++|.+++.. .+... ...+..+...++ .--.+.++++|++|..+
T Consensus 116 ~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred cCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 258999999665432 22222 222222222111 11246899999999764
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=97.41 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=84.9
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCC------------CCC----CccceeEEEEe-----------------
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSE------------DMI----PTVGFNMRKVT----------------- 60 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~------------~~~----~t~~~~~~~~~----------------- 60 (184)
........|+++|+.|||||||+++++...... ... ...+.....+.
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALE 96 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHH
Confidence 344556778999999999999999998431100 000 00000111100
Q ss_pred ---ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 61 ---KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 61 ---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
..+..+.++++.|.-.... .+....+..+.|+|+.+.+.... .. ......|.++++||+|+.+..
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~~-------~~~~~~a~iiv~NK~Dl~~~~ 164 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--KY-------PGMFKEADLIVINKADLAEAV 164 (207)
T ss_pred HhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--hh-------HhHHhhCCEEEEEHHHccccc
Confidence 1134566777766211000 11112344566777764432211 10 111246789999999997532
Q ss_pred --CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 138 --SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
...+..+.+... ....+++++||++|+|++++++++.++.
T Consensus 165 ~~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 165 GFDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 233333333211 2346799999999999999999998864
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-14 Score=112.65 Aligned_cols=113 Identities=20% Similarity=0.195 Sum_probs=80.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--C----------------CCCCccceeEEEEee----------------c
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS--E----------------DMIPTVGFNMRKVTK----------------G 62 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~----------------~~~~t~~~~~~~~~~----------------~ 62 (184)
.+..+|+|+|+.++|||||+++|+...-. . ....|+......+.+ .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 35578999999999999999999843210 0 011122211111222 3
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
++.++++||||+.+|.......++.+|++|+|+|+...-.... ...+..... .++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 6889999999999999999999999999999999986544333 233333333 479999999999987
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.1e-14 Score=100.36 Aligned_cols=113 Identities=23% Similarity=0.329 Sum_probs=82.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc--CC--------------C--------CCCCCCccceeEEEEeecCEEEEEEEcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT--GG--------------Y--------SEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~--~~--------------~--------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g 73 (184)
+.-..+|+-+|.+|||||-..++- +. . ....+-++..+...+++.++.+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 345678899999999999999981 10 0 01111233344455788999999999999
Q ss_pred ccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
|++|.......+.-+|.+++|+|+... ++.....+.++. ...++||+=++||.|...
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVc---rlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVC---RLRDIPIFTFINKLDREG 147 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHH---hhcCCceEEEeecccccc
Confidence 999999888888999999999999654 333333333333 336899999999999644
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=96.63 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=98.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC----CC-----CCCCCccceeEEEE---------eecCEEEEEEEcCCccchhH
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG----YS-----EDMIPTVGFNMRKV---------TKGNVTIKLWDLGGQRRFRT 79 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~----~~-----~~~~~t~~~~~~~~---------~~~~~~~~~~d~~g~~~~~~ 79 (184)
..++++++|+..||||||.+++..-. |. .+.+-|.+.-+..+ ..+..++.++|+||+.....
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 34899999999999999999997321 11 11222333222222 23458899999999988777
Q ss_pred hHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH----HHHHHhC--CCccC-
Q 030000 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLG--LESIT- 152 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~----~~~~~~~--~~~~~- 152 (184)
......+-.|.+++|+|+...-.-+..+..+.--+ --...++|+||+|...+...+ +..+... ++...
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-----~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-----LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhh-----hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 77666777899999999975433333222211111 123467888999887653332 2222221 12222
Q ss_pred CCceeEEEeeeccC----CCHHHHHHHHHHHh
Q 030000 153 DREVCCYMISCKDS----INIDAVIDWLIKHS 180 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~----~~i~~l~~~i~~~~ 180 (184)
....|++++||+.| ++|.++.+.+.+.+
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 23479999999999 67777777776654
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=94.00 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=92.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc----------------------CCCCCCC------CCccceeEEEE----------
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT----------------------GGYSEDM------IPTVGFNMRKV---------- 59 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~----------------------~~~~~~~------~~t~~~~~~~~---------- 59 (184)
+.+.|+|.|+||+|||||++.+.. +.+-.+. ....+.....+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 568999999999999999999971 0000000 00112222222
Q ss_pred ----------eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEe
Q 030000 60 ----------TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129 (184)
Q Consensus 60 ----------~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~n 129 (184)
+.-++++.+++|.|--+-.... ..-+|.+++|.-+.-.+..+.++.-+.++ .-++|+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I---~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVN 175 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVDI---ADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH---HTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH---HHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEe
Confidence 1235889999998743322222 44599999999998887777666655555 3489999
Q ss_pred CCCcccccC-HHHHHHHhCCCc--cCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 130 KIDKSEALS-KQALVDQLGLES--ITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 130 K~D~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
|+|...... ..++...+.+.. ......+++.+||.+|.||+++++.|.++-.
T Consensus 176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 999654332 344444443322 2233468999999999999999999988653
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=98.49 Aligned_cols=156 Identities=15% Similarity=0.105 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-----CCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS-----EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
-|+..|+-..|||||++.+.+.... .+.+.|.+..+.....++..+.++|.||++++-+.....+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4778999999999999999865433 22345666666666677779999999999999998888888999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
|+++.-..+..+ ...++...+ ....++|+||+|..++...++..+.+..... ....+++.+|+++|+||+++.+.
T Consensus 82 ~~deGl~~qtgE--hL~iLdllg--i~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEGLMAQTGE--HLLILDLLG--IKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccCcchhhHH--HHHHHHhcC--CCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 996543333222 222333322 3456999999999876655555554432211 45567899999999999999999
Q ss_pred HHHHhh
Q 030000 176 LIKHSK 181 (184)
Q Consensus 176 i~~~~~ 181 (184)
|.+..+
T Consensus 157 l~~L~~ 162 (447)
T COG3276 157 LIDLLE 162 (447)
T ss_pred HHHhhh
Confidence 998873
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-14 Score=102.66 Aligned_cols=131 Identities=21% Similarity=0.313 Sum_probs=93.7
Q ss_pred CccceeEEEEee-cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC----------CCHHHHHHHHHHHhcCCC
Q 030000 50 PTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR----------DSVPIARSELHELLMKPS 118 (184)
Q Consensus 50 ~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 118 (184)
+|.|+....+.. .+..+.++|++|+..-+.-|..++.+++++|+|+++++. ..+......+..+.+...
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 466677777777 889999999999999999999999999999999998632 235556677777777766
Q ss_pred CCCCcEEEEEeCCCcccc--------------------cCHHHHHHHhC----CCcc-CC--CceeEEEeeeccCCCHHH
Q 030000 119 LSGIPLLVLGNKIDKSEA--------------------LSKQALVDQLG----LESI-TD--REVCCYMISCKDSINIDA 171 (184)
Q Consensus 119 ~~~~~iivv~nK~D~~~~--------------------~~~~~~~~~~~----~~~~-~~--~~~~~~~~Sa~~~~~i~~ 171 (184)
..+.|+++++||.|+... .+.+...+.+. .... .. +.+.++.++|.+..++..
T Consensus 301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~ 380 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK 380 (389)
T ss_dssp GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence 678999999999997542 11122222221 1111 11 556677899999999999
Q ss_pred HHHHHHHHh
Q 030000 172 VIDWLIKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+|+.+.+.+
T Consensus 381 v~~~v~~~i 389 (389)
T PF00503_consen 381 VFNAVKDII 389 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhcCcC
Confidence 999988754
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=104.51 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=107.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEe----------------ecCEEEEEEEcCCccchh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMI----PTVGFNMRKVT----------------KGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~----~t~~~~~~~~~----------------~~~~~~~~~d~~g~~~~~ 78 (184)
..-+||+|+..+|||-|+..+.+.+...... ..+|.++.... ..-..+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 4568999999999999999998766544322 23343333322 122447899999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCC---CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc------cC-----------
Q 030000 79 TMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA------LS----------- 138 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------~~----------- 138 (184)
.........||.+|+|+|+... +++..+. +++. .+.|+||++||+|.+-. .+
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiESi~-----lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----LLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHHHH-----HHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 9988888999999999999753 3333322 2222 58999999999996421 11
Q ss_pred -HHHHHHHhC----------CC---cc----CCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 139 -KQALVDQLG----------LE---SI----TDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 139 -~~~~~~~~~----------~~---~~----~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..++..++. +. .+ ....+.++++||.+|+||.+|+-+|++..+.
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 122222221 11 01 1246789999999999999999999987664
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=93.75 Aligned_cols=108 Identities=13% Similarity=0.005 Sum_probs=66.6
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~ 141 (184)
.++++.++||+|..... ......+|.++++.+.. +...+..+...+ .++|.++++||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 36889999999854221 23456678888775543 333333333222 3577899999999976543222
Q ss_pred HHHHh----CC--CccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 142 LVDQL----GL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 142 ~~~~~----~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
....+ .. ........+++.+||++|.|++++++++.++..
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 11111 11 001112236899999999999999999988643
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-13 Score=91.89 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=97.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC-----C------CCCCCCCccc-----------------eeEEE-----------
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG-----G------YSEDMIPTVG-----------------FNMRK----------- 58 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~-----~------~~~~~~~t~~-----------------~~~~~----------- 58 (184)
+...|+|.|.||+|||||+..|... . ..++...|-| .....
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 5578999999999999999999710 0 0011111111 11111
Q ss_pred ---------EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEe
Q 030000 59 ---------VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129 (184)
Q Consensus 59 ---------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~n 129 (184)
++.-++++.|++|.|--+..-.. ..-+|.+++|.=+.-.+..+.++.-+.++ --++|+|
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~I---~~~aDt~~~v~~pg~GD~~Q~iK~GimEi---------aDi~vIN 197 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVDI---ANMADTFLVVMIPGAGDDLQGIKAGIMEI---------ADIIVIN 197 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhHH---hhhcceEEEEecCCCCcHHHHHHhhhhhh---------hheeeEe
Confidence 12235889999998753332222 33389999988887777777776665554 3488999
Q ss_pred CCCccccc-CHHHHHHHhCCCc----cCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 130 KIDKSEAL-SKQALVDQLGLES----ITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 130 K~D~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
|.|....+ ...++...+.... ......+++.+||.+|+|+.++++.|.++.+.
T Consensus 198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 99964432 1233333333321 22345679999999999999999999988653
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=106.32 Aligned_cols=116 Identities=22% Similarity=0.224 Sum_probs=87.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC--------CC------------CCCCCccceeEEEEeecC-EEEEEEEcCCc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGG--------YS------------EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQ 74 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~--------~~------------~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~ 74 (184)
..+..+|+++|+.++|||||..+++... .. ...+-|+.....++.+.. +.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 3456789999999999999999998211 00 112224444555577784 99999999999
Q ss_pred cchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
-+|.......++-+|++++|+|+...-..+.. ..|.+..+ .++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADK----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhh----cCCCeEEEEECcccccc
Confidence 99999999999999999999999765444333 33333333 58999999999998654
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=88.17 Aligned_cols=145 Identities=15% Similarity=0.182 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC----------------------CCCCccceeEEE-E----------------e
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSE----------------------DMIPTVGFNMRK-V----------------T 60 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~----------------------~~~~t~~~~~~~-~----------------~ 60 (184)
++|.|.|++|||||+|+.+++..-... ...+..+..+.. . .
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 789999999999999999987211000 001111111110 0 0
Q ss_pred ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCcEEEEEeCCCcccccCH
Q 030000 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLM-KPSLSGIPLLVLGNKIDKSEALSK 139 (184)
Q Consensus 61 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~~~~~~~ 139 (184)
.....+.+++.+| .-... .++.-..+.-|+|+|.+..+... .+ ...... .-++|+||.|+.+....
T Consensus 94 ~~~~Dll~iEs~G-NL~~~--~sp~L~d~~~v~VidvteGe~~P---------~K~gP~i~~-aDllVInK~DLa~~v~~ 160 (202)
T COG0378 94 FPDLDLLFIESVG-NLVCP--FSPDLGDHLRVVVIDVTEGEDIP---------RKGGPGIFK-ADLLVINKTDLAPYVGA 160 (202)
T ss_pred CCcCCEEEEecCc-ceecc--cCcchhhceEEEEEECCCCCCCc---------ccCCCceeE-eeEEEEehHHhHHHhCc
Confidence 1114566777777 11111 11111233788999987654332 11 111122 45789999999886544
Q ss_pred --HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 140 --QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 140 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
+.+.+..... +...+++++|+++|+|++++++|+....
T Consensus 161 dlevm~~da~~~---np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 161 DLEVMARDAKEV---NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred cHHHHHHHHHHh---CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 5555544332 3456899999999999999999998754
|
|
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-13 Score=93.25 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=105.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeec----CEEEEEEEcCCccchhHhHHhhccCC----CE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQRRFRTMWERYCRGV----SA 90 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~----~~ 90 (184)
.-+|+|+|+.|+|||||+.++-+.+ ..+.+.-.++.+..+..+ -.++++|-..|...........+... ..
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc-ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 4579999999999999999997655 445555555555554432 36688999999877777666655432 36
Q ss_pred EEEEEeCCCC-CCHHHHHHHHHHHhcC-----------------------------------------------------
Q 030000 91 ILYVVDAADR-DSVPIARSELHELLMK----------------------------------------------------- 116 (184)
Q Consensus 91 ~i~v~d~~~~-~~~~~~~~~~~~~~~~----------------------------------------------------- 116 (184)
+|++.|.+++ .-++.+..|...+..+
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 8889999988 3344444444332110
Q ss_pred -------CCCCCCcEEEEEeCCCcccccC-----HHH----HHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 117 -------PSLSGIPLLVLGNKIDKSEALS-----KQA----LVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 117 -------~~~~~~~iivv~nK~D~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
....++|++||+||+|...--+ .++ +...+. .+....+...+++|+++..||+-+.++|.++.
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lR-kFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLR-KFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHH-HHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 0125789999999999843111 111 111111 11223355789999999999999999998764
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=92.14 Aligned_cols=123 Identities=17% Similarity=0.224 Sum_probs=70.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------CCccceeEEE--Eee--cCEEEEEEEcCCccch------h
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDM----------IPTVGFNMRK--VTK--GNVTIKLWDLGGQRRF------R 78 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~----------~~t~~~~~~~--~~~--~~~~~~~~d~~g~~~~------~ 78 (184)
.++|+|+|..|+|||||+|.|++....... ..+..+.... +.. ....+.++||||-... .
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999976543332 1122222222 222 2367889999992110 0
Q ss_pred HhHH--------hhc-------------cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 79 TMWE--------RYC-------------RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 79 ~~~~--------~~~-------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
.... .++ .+.|+++|+++++.. .+....-.....+. ..+++|.|+.|+|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 0111 111 246899999998754 33333333333333 468999999999998876
Q ss_pred CHHHHHHHh
Q 030000 138 SKQALVDQL 146 (184)
Q Consensus 138 ~~~~~~~~~ 146 (184)
+.+.+.+.+
T Consensus 159 el~~~k~~i 167 (281)
T PF00735_consen 159 ELQAFKQRI 167 (281)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665544444
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=94.41 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=42.2
Q ss_pred CCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 121 GIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 121 ~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
..+-++++||+|+.+.. +.+...+.+... ....+++.+|+++|+|++++.+|+.+..
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 46679999999997632 344444444321 2456799999999999999999998754
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=89.70 Aligned_cols=161 Identities=18% Similarity=0.161 Sum_probs=105.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc----------------CCCCCCC--CCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT----------------GGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~----------------~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
.+.+++|+.+|+.+.|||||..++.. ++.+++. +-|+...-..++..+..+..+|+||+.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 35789999999999999999988861 0111111 12333333335566778889999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCHHH-----HHHHhCCCcc
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSKQA-----LVDQLGLESI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~-----~~~~~~~~~~ 151 (184)
-..+..-..+.|+.|+|+.+++....+.-...+.. ..-++| +++++||+|+.+..+..+ ..+.+..-.+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLla-----rqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLA-----RQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhh-----hhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 98888888889999999999886555443332221 113564 667789999987544322 2233333333
Q ss_pred CCCceeEEEeeeccCC--------CHHHHHHHHHHHhh
Q 030000 152 TDREVCCYMISCKDSI--------NIDAVIDWLIKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~--------~i~~l~~~i~~~~~ 181 (184)
.....|++..||+..- .|.+|.+.+.+.++
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 3456788888886432 25666666666554
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-13 Score=85.44 Aligned_cols=114 Identities=20% Similarity=0.166 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
+||+++|..|+|||+|+.++....+...+. +|.+ +........+.++.++.|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 589999999999999999998777765444 4444 2233344567789999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 99 DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+..++... |...+... ...+.|.++++||.|+.+.... .+... ..++++|+++|.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~---~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQV---ATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCcC---CHHHH--------HHHHHHhCCCcchhh
Confidence 88887654 44434332 3356889999999997432211 11111 135678999999875
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=87.75 Aligned_cols=162 Identities=21% Similarity=0.293 Sum_probs=103.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---CccceeEEEEeecCEEEEEEEcCCccchhH---hHHhhccCCCEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMI---PTVGFNMRKVTKGNVTIKLWDLGGQRRFRT---MWERYCRGVSAIL 92 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~~~~~~~~~~~~i 92 (184)
..+|+++|...|||||+.+..+..-.+.+.. +|.......+...-+.+.+||.|||..+.. .....++++.+.+
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 3569999999999999999887554433211 222233333445557899999999886543 3556788999999
Q ss_pred EEEeCCCCCCHHHHHHH-HHHHhcCCCCCCCcEEEEEeCCCcccccCH--------HHHHHHhCCCccCCCceeEEEeee
Q 030000 93 YVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKIDKSEALSK--------QALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|+|+.+.. .+.+... +.....+.-.+++.+-+++.|+|-...+.. +...+.+...........++.+|.
T Consensus 107 fvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 999996532 2222221 111223444578899999999998764322 122222222233345667888887
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
.+. .|-|.|..+.+.+..
T Consensus 186 yDH-SIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 186 YDH-SIFEAFSKVVQKLIP 203 (347)
T ss_pred cch-HHHHHHHHHHHHHhh
Confidence 654 588888888877643
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-11 Score=90.52 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=58.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeec-----------------CEEEEEEEcCCccc-
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQRR- 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~-----------------~~~~~~~d~~g~~~- 76 (184)
...++|+++|.|++|||||+|++.+...... +..|.......+... ..++.++|+||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 4568999999999999999999987665433 233555555554433 23589999999432
Q ss_pred ------hhHhHHhhccCCCEEEEEEeCC
Q 030000 77 ------FRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 77 ------~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
.....-..++++|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1223334578899999999984
|
|
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=88.64 Aligned_cols=133 Identities=21% Similarity=0.238 Sum_probs=93.9
Q ss_pred ccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC----------CCHHHHHHHHHHHhcCCCCC
Q 030000 51 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR----------DSVPIARSELHELLMKPSLS 120 (184)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~ 120 (184)
|.|+...++....+.+.++|.+||.+-+.-|...+.+..++|+|+..+.. ..+......+..+++..-..
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 66777778888889999999999999999999999999999999987742 23334444455555554456
Q ss_pred CCcEEEEEeCCCcccccC---HHHHHHHh------------------------------------C-CCccCCCceeEEE
Q 030000 121 GIPLLVLGNKIDKSEALS---KQALVDQL------------------------------------G-LESITDREVCCYM 160 (184)
Q Consensus 121 ~~~iivv~nK~D~~~~~~---~~~~~~~~------------------------------------~-~~~~~~~~~~~~~ 160 (184)
.+.+|+++||.|+....- ...+.+.+ . ...-..+.+...+
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 688999999999865211 01111111 0 0011123455678
Q ss_pred eeeccCCCHHHHHHHHHHHhhhc
Q 030000 161 ISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
++|.+-++|..+|+...+.++.+
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr~ 371 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQRM 371 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887754
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-12 Score=82.93 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=42.2
Q ss_pred EEEEEEcCCccc----hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 030000 65 TIKLWDLGGQRR----FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 65 ~~~~~d~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 131 (184)
.+.++|+||... ....+..+++.+|++++|.+++...+-.....+.. .... ....+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~-~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQ-MLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHH-HHTT---TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHH-HhcC---CCCeEEEEEcCC
Confidence 378999999543 23567778899999999999987555443333333 3333 334489999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=90.80 Aligned_cols=96 Identities=18% Similarity=0.128 Sum_probs=73.1
Q ss_pred ccchhHhHHhhccCCCEEEEEEeCCCCC-CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH-HHHHHhCCCcc
Q 030000 74 QRRFRTMWERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESI 151 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~ 151 (184)
.+++..+...+++++|++++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+..... +..+.+.
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~---- 94 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR---- 94 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH----
Confidence 3566667777899999999999999877 89999888875532 579999999999996533221 2222221
Q ss_pred CCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 152 TDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
...++++++||++|+|++++++.+.+
T Consensus 95 -~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 -NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 23457999999999999999998764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-12 Score=86.02 Aligned_cols=135 Identities=19% Similarity=0.300 Sum_probs=95.5
Q ss_pred CCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC----------CCCCHHHHHHHHHHHhcCC
Q 030000 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 117 (184)
..||.|+....++..+..+.++|.+|+..-+.-|...+++...+++++..+ +....+.....+..++.+.
T Consensus 183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP 262 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 262 (359)
T ss_pred ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc
Confidence 346777777777788888999999999988888888888776666655443 4556777777778888888
Q ss_pred CCCCCcEEEEEeCCCcccccC------------------HHH----HHHHhC-CCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 118 SLSGIPLLVLGNKIDKSEALS------------------KQA----LVDQLG-LESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 118 ~~~~~~iivv~nK~D~~~~~~------------------~~~----~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
...+-++|+++||.|+.++.- .+. +.+.+. ...-..+...-.+++|.+-+||.-+|.
T Consensus 263 WF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFa 342 (359)
T KOG0085|consen 263 WFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFA 342 (359)
T ss_pred cccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHH
Confidence 878899999999999876321 111 111111 111112334456789999999999999
Q ss_pred HHHHHhhh
Q 030000 175 WLIKHSKT 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
.+.+.+.+
T Consensus 343 aVkDtiLq 350 (359)
T KOG0085|consen 343 AVKDTILQ 350 (359)
T ss_pred HHHHHHHH
Confidence 98887754
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.2e-12 Score=83.13 Aligned_cols=119 Identities=24% Similarity=0.382 Sum_probs=81.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEee-cCEEEEEEEcCCccchhHhHH-----hhccCCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWE-----RYCRGVS 89 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~-----~~~~~~~ 89 (184)
.-||+++|.+|||||++=..++.+-. ..-.+.|+++.-...+. ++..+++||++|++.+..... ..+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 45899999999999998777763332 22334566655555543 458899999999996654332 3577899
Q ss_pred EEEEEEeCCCCCCHHHHHHH---HHHHhcCCCCCCCcEEEEEeCCCcccccCH
Q 030000 90 AILYVVDAADRDSVPIARSE---LHELLMKPSLSGIPLLVLGNKIDKSEALSK 139 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~iivv~nK~D~~~~~~~ 139 (184)
++++|+|+...+-...+..+ +..+++ ..+...++...+|.|+......
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r 134 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDAR 134 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchH
Confidence 99999999876544444333 333332 3467888999999999875544
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.9e-11 Score=90.00 Aligned_cols=119 Identities=15% Similarity=0.126 Sum_probs=71.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC-CCCC--CCccceeEEEEeecCEEEEEEEcCCccchh----------HhHHhh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGY-SEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFR----------TMWERY 84 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~----------~~~~~~ 84 (184)
...+|+++|.+|+||||++|++++... .... ..|...........+..+.++||||..... .....+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 347899999999999999999998753 2221 223333222233457889999999955321 112223
Q ss_pred cc--CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCC-CCcEEEEEeCCCcccc
Q 030000 85 CR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLS-GIPLLVLGNKIDKSEA 136 (184)
Q Consensus 85 ~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~iivv~nK~D~~~~ 136 (184)
+. .+|++++|..+........-...+..+...++.. -...||++|+.|..++
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 33 4799999988753333212222333332222211 1457899999998863
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6e-11 Score=84.25 Aligned_cols=124 Identities=19% Similarity=0.345 Sum_probs=78.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCccceeEEE--Eeec--CEEEEEEEcCCccch---hHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSED----------MIPTVGFNMRK--VTKG--NVTIKLWDLGGQRRF---RTM 80 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~----------~~~t~~~~~~~--~~~~--~~~~~~~d~~g~~~~---~~~ 80 (184)
-.++|+++|+.|+|||||+|+|++...... ..+|+.+...+ +... ...++++||||--++ ...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 469999999999999999999997633222 12333333333 2222 367889999992211 111
Q ss_pred H-----------Hhhc--------------cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 81 W-----------ERYC--------------RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 81 ~-----------~~~~--------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
| ..++ .+.|+++|.+.++.. .+..+.-..+.-+. ..+.+|.|+.|+|...
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~lT 176 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccccCC
Confidence 1 1111 136889999998643 44444433333332 4688999999999988
Q ss_pred ccCHHHHHHHh
Q 030000 136 ALSKQALVDQL 146 (184)
Q Consensus 136 ~~~~~~~~~~~ 146 (184)
..+...+.+.+
T Consensus 177 ~~El~~~K~~I 187 (373)
T COG5019 177 DDELAEFKERI 187 (373)
T ss_pred HHHHHHHHHHH
Confidence 77765555554
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-10 Score=81.24 Aligned_cols=151 Identities=16% Similarity=0.181 Sum_probs=84.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC----CCC--------------CCCC---CccceeE---EEEe-----ecCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG----GYS--------------EDMI---PTVGFNM---RKVT-----KGNVTIKL 68 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~----~~~--------------~~~~---~t~~~~~---~~~~-----~~~~~~~~ 68 (184)
..+-|+|+|+.++|||||+|+|.+. +.. ...+ .|....+ ..++ .....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4688999999999999999999966 222 1122 2333333 2222 33478999
Q ss_pred EEcCCcc--------chhH-----------h----------HHhhcc-CCCEEEEEE-eCC----CCCCHHHH-HHHHHH
Q 030000 69 WDLGGQR--------RFRT-----------M----------WERYCR-GVSAILYVV-DAA----DRDSVPIA-RSELHE 112 (184)
Q Consensus 69 ~d~~g~~--------~~~~-----------~----------~~~~~~-~~~~~i~v~-d~~----~~~~~~~~-~~~~~~ 112 (184)
+||+|-. +... . ....+. .++..++|. |.+ .++.+... ..+...
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 9999911 1111 0 223344 788888887 764 11223333 333333
Q ss_pred HhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee--ccCCCHHHHHHHHH
Q 030000 113 LLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC--KDSINIDAVIDWLI 177 (184)
Q Consensus 113 ~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~l~~~i~ 177 (184)
+ +. .++|+++++||+|-...+. .+..+.+.. .+ ..+++.+|+ .+.+.|..+++.+.
T Consensus 176 L-k~---~~kPfiivlN~~dp~~~et-~~l~~~l~e-ky---~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 176 L-KE---LNKPFIILLNSTHPYHPET-EALRQELEE-KY---DVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred H-Hh---cCCCEEEEEECcCCCCchh-HHHHHHHHH-Hh---CCceEEEEHHHcCHHHHHHHHHHHH
Confidence 3 33 5899999999999433222 222222211 01 124555554 44556666666554
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.1e-11 Score=88.24 Aligned_cols=160 Identities=18% Similarity=0.247 Sum_probs=98.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe--ec----CEEEEEEEcCCccchhHhHHhhccCC---
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT--KG----NVTIKLWDLGGQRRFRTMWERYCRGV--- 88 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~--~~----~~~~~~~d~~g~~~~~~~~~~~~~~~--- 88 (184)
..-.|+|+|..++|||||+.+|.+.+ .+.++.+..|.-++ .. ...+.+|...|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34689999999999999999986543 23344454444333 22 25689999988777777666655432
Q ss_pred -CEEEEEEeCCCCCCHHHH-HHHHHHH------------------------h-cC------C------------------
Q 030000 89 -SAILYVVDAADRDSVPIA-RSELHEL------------------------L-MK------P------------------ 117 (184)
Q Consensus 89 -~~~i~v~d~~~~~~~~~~-~~~~~~~------------------------~-~~------~------------------ 117 (184)
-.+|+|+|.+.|..+... ..|+..+ + .+ .
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 368899999975544311 1111110 0 00 0
Q ss_pred ------------CCCCCcEEEEEeCCCcccccCH---------HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 118 ------------SLSGIPLLVLGNKIDKSEALSK---------QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 118 ------------~~~~~~iivv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
..-++|++||++|+|....-+. +-+...+. ......+..++++|++...+++-++.+|
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR-~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR-TFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH-HHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 0124899999999997542111 11111111 1122345678889999999999999998
Q ss_pred HHHhh
Q 030000 177 IKHSK 181 (184)
Q Consensus 177 ~~~~~ 181 (184)
.+.+.
T Consensus 260 ~h~l~ 264 (472)
T PF05783_consen 260 LHRLY 264 (472)
T ss_pred HHHhc
Confidence 88764
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=83.47 Aligned_cols=123 Identities=17% Similarity=0.300 Sum_probs=77.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCccceeEEEE--eec--CEEEEEEEcCCccc---------
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSED---------MIPTVGFNMRKV--TKG--NVTIKLWDLGGQRR--------- 76 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~---------~~~t~~~~~~~~--~~~--~~~~~~~d~~g~~~--------- 76 (184)
.|+++++|+.|.|||||+|+|+...+... ...|..+..... +.. ...++++||||-.+
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 59999999999999999999997644332 112333333332 222 36688999999221
Q ss_pred -----hhHhHHhh-----------cc--CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 77 -----FRTMWERY-----------CR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 77 -----~~~~~~~~-----------~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
..+....| +. +.|+++|.+.++.. .+..+.-.++.-+. ..+++|.|+.|+|.....+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHHH
Confidence 11111222 22 46889999998743 34444433333332 4788999999999988766
Q ss_pred HHHHHHHh
Q 030000 139 KQALVDQL 146 (184)
Q Consensus 139 ~~~~~~~~ 146 (184)
...+.+..
T Consensus 176 l~~~K~~I 183 (366)
T KOG2655|consen 176 LNQFKKRI 183 (366)
T ss_pred HHHHHHHH
Confidence 65544444
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-09 Score=73.97 Aligned_cols=70 Identities=19% Similarity=0.138 Sum_probs=43.7
Q ss_pred EEEEEEEcCCccc-------------hhHhHHhhccC-CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEe
Q 030000 64 VTIKLWDLGGQRR-------------FRTMWERYCRG-VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129 (184)
Q Consensus 64 ~~~~~~d~~g~~~-------------~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~n 129 (184)
..+.++|+||-.. ...+...++++ .+.+++|+|+...-.-....... ..+ ...+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia-~~l---d~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLA-KEV---DPQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHH-HHH---HHcCCcEEEEEE
Confidence 5688999999532 12345556774 45889999886432222211222 222 235789999999
Q ss_pred CCCccccc
Q 030000 130 KIDKSEAL 137 (184)
Q Consensus 130 K~D~~~~~ 137 (184)
|.|..+..
T Consensus 201 K~D~~~~~ 208 (240)
T smart00053 201 KLDLMDEG 208 (240)
T ss_pred CCCCCCcc
Confidence 99997643
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-11 Score=91.15 Aligned_cols=112 Identities=19% Similarity=0.265 Sum_probs=81.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCc---------------cceeE---------EEEeecCEEEEEEEcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPT---------------VGFNM---------RKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t---------------~~~~~---------~~~~~~~~~~~~~d~~g 73 (184)
...+|+++|+-++|||+|+..|..+..+.....+ .|... ...+.+.+-+++.||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 3467899999999999999999854432221110 01111 11234558899999999
Q ss_pred ccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
+-.|.......++.+|++++++|+.+.-.+.. ...+...+ ..+.|+.+|+||.|..
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai----q~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI----QNRLPIVVVINKVDRL 262 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH----hccCcEEEEEehhHHH
Confidence 99999999999999999999999987755543 33333333 3589999999999964
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-11 Score=85.56 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=100.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc----------------ceeEEE--E-------------------
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV----------------GFNMRK--V------------------- 59 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~----------------~~~~~~--~------------------- 59 (184)
+.++.|++.|+.+.|||||...|.-++.....+.|. ...+.. +
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 467899999999999999999998655444333222 122211 1
Q ss_pred --eecCEEEEEEEcCCccchhHhHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 60 --TKGNVTIKLWDLGGQRRFRTMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 60 --~~~~~~~~~~d~~g~~~~~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+..+.-+.++|+.|++.|.+....- -++.|-.++++.+++.-+...- +.+.-. ...+.|+++++||+|+.+
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk-EHLgi~----~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK-EHLGIA----LAMELPVIVVVTKIDMVP 269 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh-Hhhhhh----hhhcCCEEEEEEecccCc
Confidence 1123558899999999988765543 3568999999999876444322 222212 225799999999999987
Q ss_pred ccCHHHHHHH----hCC--------------------CccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 136 ALSKQALVDQ----LGL--------------------ESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 136 ~~~~~~~~~~----~~~--------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
.+..+...+. +.. ......-.|+|.+|+.+|+|.+-+.+.+
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 6544332222 211 0011125799999999999987555444
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.6e-10 Score=75.06 Aligned_cols=138 Identities=18% Similarity=0.284 Sum_probs=80.7
Q ss_pred HHHHHHHhhhhccc--eeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCccceeEE--EEeecC--EEEEEE
Q 030000 5 DSILNWLRSLFFKQ--EMELSLIGLQNAGKTSLVNTIATGGYSED---------MIPTVGFNMR--KVTKGN--VTIKLW 69 (184)
Q Consensus 5 ~~~~~~~~~~~~~~--~~~i~v~G~~~~GKstli~~~~~~~~~~~---------~~~t~~~~~~--~~~~~~--~~~~~~ 69 (184)
+++.+.++.-.++. .|+|+|+|.+|.|||||+|+++......+ ...|..+... .++.++ .+++++
T Consensus 30 dtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltvi 109 (336)
T KOG1547|consen 30 DTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVI 109 (336)
T ss_pred HHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEe
Confidence 34445555544443 68999999999999999999985443221 1123332221 133333 567899
Q ss_pred EcCCccc---hhHhHH-----------h------------hcc--CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCC
Q 030000 70 DLGGQRR---FRTMWE-----------R------------YCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSG 121 (184)
Q Consensus 70 d~~g~~~---~~~~~~-----------~------------~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (184)
||||--+ ...+|. . .+. ..++++|.+.++.. ++..+.-.+..-+. .-
T Consensus 110 DTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt----~v 184 (336)
T KOG1547|consen 110 DTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLT----EV 184 (336)
T ss_pred cCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHh----hh
Confidence 9999111 111111 1 122 35778888888743 34334333322222 24
Q ss_pred CcEEEEEeCCCcccccCHHHHHHHhC
Q 030000 122 IPLLVLGNKIDKSEALSKQALVDQLG 147 (184)
Q Consensus 122 ~~iivv~nK~D~~~~~~~~~~~~~~~ 147 (184)
+.++.|+.|+|...-++...+.+++.
T Consensus 185 vNvvPVIakaDtlTleEr~~FkqrI~ 210 (336)
T KOG1547|consen 185 VNVVPVIAKADTLTLEERSAFKQRIR 210 (336)
T ss_pred heeeeeEeecccccHHHHHHHHHHHH
Confidence 67888999999887776666665554
|
|
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-10 Score=80.43 Aligned_cols=162 Identities=16% Similarity=0.104 Sum_probs=103.4
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc----------------CCCCCCCCCccceeEEEE--eecCEEEEEEEcCCccc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT----------------GGYSEDMIPTVGFNMRKV--TKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~----------------~~~~~~~~~t~~~~~~~~--~~~~~~~~~~d~~g~~~ 76 (184)
..+.+.+|.-+|+...|||||--++.. ++.+++...-+.++...+ +.....+.=.|+||+.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 345689999999999999999888871 111112222233333333 34445567789999999
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-----HHHHHHhCCCcc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESI 151 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~ 151 (184)
|-..+..-..+.|+.|+|+.++|....+.-...+. . ++.. -..+++++||.|+.+..+. -++.+.+....+
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLL-A-rQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLL-A-RQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHH-H-HHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 99888888889999999999999765554333222 1 2222 2456777899999854332 223344444455
Q ss_pred CCCceeEEEeeec---cCCC-------HHHHHHHHHHHh
Q 030000 152 TDREVCCYMISCK---DSIN-------IDAVIDWLIKHS 180 (184)
Q Consensus 152 ~~~~~~~~~~Sa~---~~~~-------i~~l~~~i~~~~ 180 (184)
.....|++.-||+ .|.+ |.++++.+-+.+
T Consensus 206 ~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 206 DGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred CCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 6677889887764 4432 455555554433
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.8e-10 Score=82.48 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=102.3
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----EEeecCEEEEEEEcCCccchhHhHHhhccCCC
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVS 89 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 89 (184)
...++-+...|+|+.++|||.+++.++++.+...+..+....+. ........+.+.|.+-.. ....... -..||
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~-~~~l~~k-e~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDD-QDFLTSK-EAACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccc-cccccCc-cceee
Confidence 34456788999999999999999999998877655444443222 233444555666655431 1111111 15699
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-----CHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++.++||.+++.++............. .+.|+++|++|+|+.+.. ...++...+++.. |+. .|.+
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~------P~~-~S~~ 567 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP------PIH-ISSK 567 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC------Cee-eccC
Confidence 999999999999998887766654333 789999999999996532 2366777666542 233 3444
Q ss_pred -cCCCHHHHHHHHHHHhh
Q 030000 165 -DSINIDAVIDWLIKHSK 181 (184)
Q Consensus 165 -~~~~i~~l~~~i~~~~~ 181 (184)
.+. .++|..|..+..
T Consensus 568 ~~~s--~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 568 TLSS--NELFIKLATMAQ 583 (625)
T ss_pred CCCC--chHHHHHHHhhh
Confidence 333 688888877654
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-10 Score=85.14 Aligned_cols=146 Identities=17% Similarity=0.323 Sum_probs=86.7
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccce---------------------------------------
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGF--------------------------------------- 54 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~--------------------------------------- 54 (184)
..+.+.||++.|..++||||++|+++..+.-+ ..+++...
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 45678999999999999999999999443211 11111110
Q ss_pred -----eEEEEeec-------CEEEEEEEcCCcc---chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCC
Q 030000 55 -----NMRKVTKG-------NVTIKLWDLGGQR---RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSL 119 (184)
Q Consensus 55 -----~~~~~~~~-------~~~~~~~d~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 119 (184)
....+-+. .-.+.++|.||.. ...+....+..++|++|+|.++.+. +......+.... ..
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~v---s~ 259 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKV---SE 259 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHh---hc
Confidence 00001011 0257899999943 5566777788999999999998653 333333333332 22
Q ss_pred CCCcEEEEEeCCCcccccCH--HHH---HHHhCCCccCCCceeEEEeeecc
Q 030000 120 SGIPLLVLGNKIDKSEALSK--QAL---VDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 120 ~~~~iivv~nK~D~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+..++++.||+|....++. +.+ ...+.........-.+|++|++.
T Consensus 260 ~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 260 EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 35667777899998765321 222 22233222222333588899654
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-11 Score=88.81 Aligned_cols=159 Identities=23% Similarity=0.375 Sum_probs=115.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.++|++|+|..++|||+|+.+++-+.+.+...+-.+..... +......+.+.|.+|... ..+....|++|+|+
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEE
Confidence 57999999999999999999999998887777666644433 345566777888887432 44567799999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
...+..+++.+......+-.+.....+|.++++++.-.............-.........+.+|++++.+|.+++..|+.
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~ 183 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQE 183 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHH
Confidence 99999999999888887766666677888888887644322111000000001112234457999999999999999999
Q ss_pred HHHHhh
Q 030000 176 LIKHSK 181 (184)
Q Consensus 176 i~~~~~ 181 (184)
+...+.
T Consensus 184 ~~~k~i 189 (749)
T KOG0705|consen 184 VAQKIV 189 (749)
T ss_pred HHHHHH
Confidence 887664
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-09 Score=81.41 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=75.4
Q ss_pred EEEEEEEcCC-------------ccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 030000 64 VTIKLWDLGG-------------QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 130 (184)
Q Consensus 64 ~~~~~~d~~g-------------~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK 130 (184)
....++|.|| .+...++...++++.+++|+|+.-. +.+........++......+...|+|+||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 4578999999 3346678888999999999999743 44555555666777788889999999999
Q ss_pred CCcccc--cCHHHHHHHhCC---CccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 131 IDKSEA--LSKQALVDQLGL---ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 131 ~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
+|+.+. .++..+.+.+.- .......+.++..-..+.+.|+++-++-.+...
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~YEE~FF~ 544 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREYEEEFFQ 544 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHHHHHHhh
Confidence 999875 344555555532 111122222333333445567777666555443
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-10 Score=82.08 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecC-----------------EEEEEEEcCCccc----
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRR---- 76 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~---- 76 (184)
++|+++|.|++|||||+|++.+...... +..|.......+...+ .++.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999998774322 2345555544443332 3589999999432
Q ss_pred ---hhHhHHhhccCCCEEEEEEeCC
Q 030000 77 ---FRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 77 ---~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
.....-..++++|+++.|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1122334578899999999984
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-10 Score=79.83 Aligned_cols=77 Identities=27% Similarity=0.382 Sum_probs=54.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecC-----------------EEEEEEEcCCccc------
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRR------ 76 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~------ 76 (184)
|+++|.|++|||||+|++.+.+.... +..|.......+...+ ..+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998776433 3345555555444333 2589999999432
Q ss_pred -hhHhHHhhccCCCEEEEEEeCC
Q 030000 77 -FRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 77 -~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
.....-..++++|+++.|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1223334577899999999974
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=76.20 Aligned_cols=99 Identities=19% Similarity=0.193 Sum_probs=64.4
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH-HHHHh---CCCcc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA-LVDQL---GLESI 151 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-~~~~~---~~~~~ 151 (184)
.+...+..+++++|++++|+|+.++..... ..+... ..+.|+++|+||+|+.+...... ..... .....
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~~~-----~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPGSLI-----PRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCCccc-----hhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 357788889999999999999987542111 111111 24689999999999975433221 11111 10111
Q ss_pred CCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 152 TDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
......++.+||++|+|++++++++.+.++
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 111235899999999999999999988764
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-10 Score=73.37 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=62.1
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCcee
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVC 157 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
+......++++|++++|+|+.++..... ..+...... .+.|+++|+||+|+.+....+....... ....+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIKE-----SEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHHH-----hCCCc
Confidence 4456667778999999999977543222 112222221 3689999999999864322222211111 12246
Q ss_pred EEEeeeccCCCHHHHHHHHHHHhh
Q 030000 158 CYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 158 ~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
++.+||++|.|++++++.+.+.++
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHh
Confidence 899999999999999999988764
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.4e-10 Score=85.10 Aligned_cols=111 Identities=21% Similarity=0.251 Sum_probs=78.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--------------CCCCCccceeEEE----EeecCEEEEEEEcCCccchh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS--------------EDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--------------~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~ 78 (184)
+..-+|+++.+...|||||+..+...+-. .....+.|++... ...+++.++++|+|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 34567899999999999999999843211 1111233333322 33578999999999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCC
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 132 (184)
+......+-+|++++++|+...---+...-....+. .+...++|+||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~-----~~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI-----EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH-----ccCceEEEEehhh
Confidence 999999999999999999975433333222222232 4677888999999
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-10 Score=81.79 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=64.8
Q ss_pred hHHhhccCCCEEEEEEeCCCCC-CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeE
Q 030000 80 MWERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCC 158 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
+....+.++|.+++|+|+.++. ....+..++.... ..++|+++|+||+|+.+....+.+.+.+. ..++++
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g~~v 152 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWGYQP 152 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHH-----hcCCeE
Confidence 3344588999999999998765 4445566665442 25799999999999975433333433332 123468
Q ss_pred EEeeeccCCCHHHHHHHHHHH
Q 030000 159 YMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 159 ~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
+.+||++|.|++++++.+...
T Consensus 153 ~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 153 LFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEEcCCCCCHHHHhhhhccc
Confidence 999999999999999988653
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.5e-10 Score=77.01 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=92.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEee-cCEEEEEEEcCCcc---------chhHhHHhh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTK-GNVTIKLWDLGGQR---------RFRTMWERY 84 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~-~~~~~~~~d~~g~~---------~~~~~~~~~ 84 (184)
....-|.|+|-.+||||||++.+......+.. -.|.+.......- .+..+.+.||.|-- .|..... .
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe-e 254 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE-E 254 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH-H
Confidence 34577899999999999999999854443221 2344443333222 23456778999822 1222222 2
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc----EEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEE
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP----LLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
...+|.++=|.|++.|.........+. .++...-+..| ++=|=||+|..+..... + ....+.
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~-vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~--------E-----~n~~v~ 320 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLH-VLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE--------E-----KNLDVG 320 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHH-HHHhcCCCcHHHHhHHHhhccccccccccCcc--------c-----cCCccc
Confidence 456899999999999876665554444 44444433333 33445666653322110 0 111577
Q ss_pred eeeccCCCHHHHHHHHHHHhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
+|+++|+|.+++.+.+-..+.
T Consensus 321 isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccccCccHHHHHHHHHHHhh
Confidence 999999999999998876654
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.3e-10 Score=71.95 Aligned_cols=53 Identities=26% Similarity=0.362 Sum_probs=35.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC-C--CCCccceeEEEEeecCEEEEEEEcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE-D--MIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g 73 (184)
+.++|+++|.+|+|||||+|++.+..... . .+.|..... +.. ...+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITL-MKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEc-CCCEEEEECcC
Confidence 56889999999999999999998754321 1 112222221 221 22478999998
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-10 Score=79.22 Aligned_cols=153 Identities=20% Similarity=0.280 Sum_probs=96.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-----------------------ccceeEEE--------------Eee
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIP-----------------------TVGFNMRK--------------VTK 61 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~-----------------------t~~~~~~~--------------~~~ 61 (184)
+.+++|+|...+|||||+..+..+......+. +.|++... .+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 68999999999999999998885543322111 11211110 112
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccC--CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRG--VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~ 139 (184)
...-+.++|.+|+.+|.......+.. .|...+|+.++....... ++.+.-+.. -++|++++++|.|+......
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchhH
Confidence 23558899999999988765554443 477788888865443322 222222222 48999999999999887554
Q ss_pred HHHHHHhCC----C---------------------ccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 140 QALVDQLGL----E---------------------SITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 140 ~~~~~~~~~----~---------------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
+...+.+.. . .....-.|+|.+|+.+|+|.+-+-..+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 443333321 0 111245789999999999987665544
|
|
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-10 Score=79.52 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=77.0
Q ss_pred EEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHH
Q 030000 65 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVD 144 (184)
Q Consensus 65 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~ 144 (184)
-+.++|+||++-....+-.-..-.|++++++..+.........+.+..+--. .-..++++-||+|+..+....+..+
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDli~e~~A~eq~e 202 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDLIKESQALEQHE 202 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhhhhHHHHHHHHH
Confidence 3779999999877666555555568888888887655544444443333111 1245788899999987654433333
Q ss_pred HhC-C-CccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 145 QLG-L-ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 145 ~~~-~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.+. + ........|++++||.-++||+-+.++|.+.++
T Consensus 203 ~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 203 QIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 222 1 122234668999999999999999999998875
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=71.88 Aligned_cols=53 Identities=25% Similarity=0.372 Sum_probs=36.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--CCccceeEEEEeecCEEEEEEEcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS-EDM--IPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~--~~t~~~~~~~~~~~~~~~~~~d~~g 73 (184)
..++++++|.+|+|||||+|++.+.... ... +.|..... +.. +..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~--~~~-~~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQE--VHL-DKKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEE--EEe-CCCEEEEECcC
Confidence 4589999999999999999999975542 222 22332222 222 23588999998
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.6e-10 Score=79.45 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=92.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC------------------CCCccceeEEEE---------------------
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSED------------------MIPTVGFNMRKV--------------------- 59 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~------------------~~~t~~~~~~~~--------------------- 59 (184)
+.+|.|+|+..+|||||+..+..+..... ..+..|-+..-+
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 68999999999999999988874332211 112222211111
Q ss_pred --eecCEEEEEEEcCCccchhHhHHhhcc--CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 60 --TKGNVTIKLWDLGGQRRFRTMWERYCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 60 --~~~~~~~~~~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+.....++++|.+|+++|......-+. -.|...+++-++-. -+--..+.+.-. ..-.+|+++|+||+|+++
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLA----LaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLA----LALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhh----hhhcCcEEEEEEeeccCc
Confidence 122355889999999998775544332 35666777765422 111111111111 224799999999999988
Q ss_pred ccCHHHHHHHh----CCC---------------------ccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 136 ALSKQALVDQL----GLE---------------------SITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 136 ~~~~~~~~~~~----~~~---------------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
..-.++-.+.+ ... +...+-+|+|.+|..+|+|.+-+..++
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 65554433332 111 112346789999999999987655443
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.3e-09 Score=73.44 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=77.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEeec--------------------------------
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKG-------------------------------- 62 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~---~~~t~~~~~~~~~~~-------------------------------- 62 (184)
...-|+++|.-..||||+++.++.++++.. ..||.......+.+.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 567899999999999999999998877632 224444222221110
Q ss_pred ---------CEEEEEEEcCCccc-----------hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCC
Q 030000 63 ---------NVTIKLWDLGGQRR-----------FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI 122 (184)
Q Consensus 63 ---------~~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (184)
--.++++||||.-. |.....=+..++|.++++||+..-+--+.....+..+ ....-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL----kG~Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL----KGHED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh----hCCcc
Confidence 02388999999322 2334444577899999999997655444455544444 23455
Q ss_pred cEEEEEeCCCcccccCH
Q 030000 123 PLLVLGNKIDKSEALSK 139 (184)
Q Consensus 123 ~iivv~nK~D~~~~~~~ 139 (184)
.+-||+||+|..+.+..
T Consensus 213 kiRVVLNKADqVdtqqL 229 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQQL 229 (532)
T ss_pred eeEEEeccccccCHHHH
Confidence 67788999998665443
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-10 Score=83.54 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=81.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC--------------------CCCCCCCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGG--------------------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
.++.-+|.+.-+-.+||||+-++++.-. .....+-|.......+.+.++.++++||||+-
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV 115 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence 3456779999999999999999998210 00111123333334466789999999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
+|--..+..++-.|+.|+++|+-..-. ......+.+..+ .++|.+-++||.|..
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~r----y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKR----YNVPRICFINKMDRM 169 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHh----cCCCeEEEEehhhhc
Confidence 999999999999999999999854322 222333333333 489999999999953
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=74.36 Aligned_cols=124 Identities=14% Similarity=0.213 Sum_probs=81.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----ccceeEEEEe--ec--CEEEEEEEcCCc-------cch-----
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP----TVGFNMRKVT--KG--NVTIKLWDLGGQ-------RRF----- 77 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~----t~~~~~~~~~--~~--~~~~~~~d~~g~-------~~~----- 77 (184)
-.|+|+-+|..|.|||||+.++++..+...+.+ ++.....+++ .. ..++.++||.|- +.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 479999999999999999999999888655443 3333333332 22 366889999981 111
Q ss_pred --hHhHHhh-------------c--cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH
Q 030000 78 --RTMWERY-------------C--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140 (184)
Q Consensus 78 --~~~~~~~-------------~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~ 140 (184)
......| + ...++++|.+.++.. ++..+......-+. .++.+|.++.|+|.....+..
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~eL~ 195 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD----SKVNIIPVIAKADTISKEELK 195 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHHHHH
Confidence 1112222 2 245778888888744 66666655554444 478889999999988776665
Q ss_pred HHHHHh
Q 030000 141 ALVDQL 146 (184)
Q Consensus 141 ~~~~~~ 146 (184)
.+...+
T Consensus 196 ~FK~ki 201 (406)
T KOG3859|consen 196 RFKIKI 201 (406)
T ss_pred HHHHHH
Confidence 554444
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=69.13 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=59.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecCEEEEEEEcCCccchhH-------hHHhhccCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT-------MWERYCRGV 88 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~ 88 (184)
...+|+++|-|.+|||||+..+........ ...|.......+...+..+++.|.||.-+..+ ......+-+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 368999999999999999999975433221 11344444455778888999999999443222 233345678
Q ss_pred CEEEEEEeCCCCCC
Q 030000 89 SAILYVVDAADRDS 102 (184)
Q Consensus 89 ~~~i~v~d~~~~~~ 102 (184)
|.+++|.|++..+.
T Consensus 141 DlilMvLDatk~e~ 154 (364)
T KOG1486|consen 141 DLILMVLDATKSED 154 (364)
T ss_pred cEEEEEecCCcchh
Confidence 99999999986443
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-09 Score=75.57 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=63.9
Q ss_pred HhhccCCCEEEEEEeCCCCC-CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEE
Q 030000 82 ERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+........... .....+++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA-----LALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH-----HhCCCeEEE
Confidence 34478899999999999887 77777777765543 478999999999996542211111111 112357999
Q ss_pred eeeccCCCHHHHHHHHHH
Q 030000 161 ISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~ 178 (184)
+||+++.|+++++.++..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999988764
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.7e-09 Score=76.70 Aligned_cols=89 Identities=19% Similarity=0.173 Sum_probs=65.0
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
..++|.+++|++.....++..+..|+.... ..++|.++|+||+|+.+........+.... +....++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence 467899999999998889999988877543 247899999999999764332222221111 11223579999999
Q ss_pred cCCCHHHHHHHHHHH
Q 030000 165 DSINIDAVIDWLIKH 179 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~ 179 (184)
+++|++++++++...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999998754
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-09 Score=71.23 Aligned_cols=53 Identities=25% Similarity=0.390 Sum_probs=34.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---------CCC--CCccceeEEEEeecCEEEEEEEcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---------EDM--IPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---------~~~--~~t~~~~~~~~~~~~~~~~~~d~~g 73 (184)
+..+++++|.+|+|||||+|++++.... ... +.|..... +.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIK--IPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEE--EecCC-CCEEEeCcC
Confidence 4578999999999999999999974421 111 12222222 22221 478999999
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-09 Score=67.70 Aligned_cols=54 Identities=26% Similarity=0.342 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEeecCEEEEEEEcCCc
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSED-MIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~d~~g~ 74 (184)
.+++++|.+|+|||||+|++++...... ..+..+.....+.... .+.+|||||.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 3899999999999999999997765321 1111122222233222 5799999995
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5e-10 Score=81.02 Aligned_cols=126 Identities=23% Similarity=0.224 Sum_probs=92.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc--------CCC------------CCCCCCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT--------GGY------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~--------~~~------------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
+--+|+++.+..+||||...+++. +.. ..+.+-|+......++++++.++++||||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 456799999999999999999982 111 112223444444557899999999999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc---CHHHHHHHhCC
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---SKQALVDQLGL 148 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~---~~~~~~~~~~~ 148 (184)
.-.....++-.|+++.|+|++-.-..+.+. ++++....++|-+.++||+|..... ..+.+.+.++.
T Consensus 116 ~leverclrvldgavav~dasagve~qtlt-----vwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLT-----VWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceee-----eehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 999999999999999999997543333333 3344555789999999999986532 34556666654
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=66.38 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=59.7
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.++++|.+++|+|+.++... ....+...+... ..++|+++|+||+|+.+..........+... ....++.+||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEeec
Confidence 47789999999999876322 122223333221 2458999999999997554333444444321 1223578999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 030000 164 KDSINIDAVIDWLIKHS 180 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~ 180 (184)
+.+.|++++.+.+.+..
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999998764
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.5e-09 Score=74.66 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=59.3
Q ss_pred hccCCCEEEEEEeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEe
Q 030000 84 YCRGVSAILYVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
...++|.+++|+|+.++...... ..|+.... . .++|+++|+||+|+.+.. ...+..+.+. ...++++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~-~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-----~~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE-A---NGIKPIIVLNKIDLLDDLEEARELLALYR-----AIGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEEhHHcCCCHHHHHHHHHHHH-----HCCCeEEEE
Confidence 35889999999999887665544 55544432 2 478999999999996321 1122222221 123479999
Q ss_pred eeccCCCHHHHHHHHHH
Q 030000 162 SCKDSINIDAVIDWLIK 178 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~ 178 (184)
||++|.|++++++.+..
T Consensus 148 SA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 148 SAKEGEGLDELKPLLAG 164 (298)
T ss_pred eCCCCccHHHHHhhccC
Confidence 99999999999988753
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-09 Score=78.69 Aligned_cols=159 Identities=17% Similarity=0.142 Sum_probs=100.2
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcC---------------------------------CCCCCCCCccceeEEEEee
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATG---------------------------------GYSEDMIPTVGFNMRKVTK 61 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~---------------------------------~~~~~~~~t~~~~~~~~~~ 61 (184)
+.+.+.+++++|+..+||||+-..++.. .-....+.|.+.-...++.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 4467899999999999999998888710 0112223455555555667
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC---CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
....+++.|+||+..|...+..-..++|..++|+.+-.. ..|+.-..-..+........-...++++||.|-....-
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 778899999999999998888888899999999987321 11211111111111111123456788899999765221
Q ss_pred ----HHHHHHH----hC-CCccCCCceeEEEeeeccCCCHHHHH
Q 030000 139 ----KQALVDQ----LG-LESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 139 ----~~~~~~~----~~-~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
.++..+. +. +-........++++|..+|.++.+.-
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 1222221 11 11122356679999999999987654
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.3e-09 Score=68.21 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=63.9
Q ss_pred CCcc-chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc
Q 030000 72 GGQR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES 150 (184)
Q Consensus 72 ~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~ 150 (184)
||+. +........++++|.+++|+|+.++...... .+.... .+.|.++|+||+|+.+........+.+..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-- 73 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-- 73 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh--
Confidence 4433 4556667778999999999999765432211 111111 25789999999999644322222222221
Q ss_pred cCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 151 ITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
....++.+|++++.|++++.+.+.+.+
T Consensus 74 ---~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 ---KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 123578999999999999999998865
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=65.94 Aligned_cols=82 Identities=21% Similarity=0.198 Sum_probs=54.1
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHH-HHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 89 SAILYVVDAADRDSVPIARSELH-ELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
|.+++|+|+.++.+.... ++. ..+.. .++|+++|+||+|+.+......+...+... ....++.+||++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 689999999876544322 222 22222 478999999999996543322322222111 12458899999999
Q ss_pred CHHHHHHHHHHH
Q 030000 168 NIDAVIDWLIKH 179 (184)
Q Consensus 168 ~i~~l~~~i~~~ 179 (184)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988764
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=66.71 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=37.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CC--CCccceeEEEEeecCEEEEEEEcCCc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE-DM--IPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~d~~g~ 74 (184)
..++++++|.+|+|||||++++.+..+.. .. ..|..... +... ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~--~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW--IKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEE--EEec-CCEEEEECCCC
Confidence 45799999999999999999999766531 11 12322222 2222 45789999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-08 Score=71.56 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=38.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--CCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDM--IPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
...++++++|.+|+|||||+|++.+.... ... +.|.... .+.. +..+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKL-GKGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEe-CCcEEEEECCCcC
Confidence 35689999999999999999999976542 221 2233332 2222 2358899999953
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-08 Score=65.35 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=37.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEeecCEEEEEEEcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~~g 73 (184)
...+++++|.+++||||+++++.+... ....++.+.... .+-..+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 457899999999999999999986543 233344443321 1112234689999999
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=71.35 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=37.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEeecCEEEEEEEcCCc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~ 74 (184)
..++++++|.+|+|||||+|++.+..... ..+.|.... .+... ..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEeC-CCEEEEECCCc
Confidence 46899999999999999999998755321 122233332 22222 25789999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=71.57 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=66.7
Q ss_pred CCcc-chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc
Q 030000 72 GGQR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES 150 (184)
Q Consensus 72 ~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~ 150 (184)
|||. +........++.+|++++|+|+.++.+... ..+...+ .+.|+++|+||+|+.+....+...+.+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH--
Confidence 6655 344566777899999999999976544322 2222232 25799999999999654323333333321
Q ss_pred cCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 151 ITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
...+++.+|++++.|++++.+.+.+.++.
T Consensus 76 ---~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 ---KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12368999999999999999998877653
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=65.31 Aligned_cols=83 Identities=20% Similarity=0.127 Sum_probs=56.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC--CCCCC---CCCccceeEEEEee---cCEEEEEEEcCCccchhH------hHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG--GYSED---MIPTVGFNMRKVTK---GNVTIKLWDLGGQRRFRT------MWER 83 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~--~~~~~---~~~t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~------~~~~ 83 (184)
+..-|+|+|++++|||+|+|++++. .+... ...|.|+-.+.... .+..+.++||+|...... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4456789999999999999999988 55433 34567766665444 367899999999543211 1122
Q ss_pred hcc--CCCEEEEEEeCCCC
Q 030000 84 YCR--GVSAILYVVDAADR 100 (184)
Q Consensus 84 ~~~--~~~~~i~v~d~~~~ 100 (184)
.+. -++.+|+..+....
T Consensus 86 ~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 86 ALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHhCEEEEeccCccc
Confidence 222 37888888877543
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.6e-07 Score=58.15 Aligned_cols=147 Identities=21% Similarity=0.246 Sum_probs=79.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecC--EEEEEEEcC-C--------------------
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLG-G-------------------- 73 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~-g-------------------- 73 (184)
+..+||.+.|+||+||||++..+.+.-. .....-.|+...++...+ .-|.++|.. |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~-~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR-EKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH-hcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 3568999999999999999998863211 111223334444444332 335555554 2
Q ss_pred ----cc-chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCC
Q 030000 74 ----QR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL 148 (184)
Q Consensus 74 ----~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~ 148 (184)
.+ ........+++.+|.+ ++|-- ...+.....+...+........|++.++.+.+-. .-.+++.+.-.
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvI--IIDEI--GpMElks~~f~~~ve~vl~~~kpliatlHrrsr~--P~v~~ik~~~~- 154 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVI--IIDEI--GPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH--PLVQRIKKLGG- 154 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEE--EEecc--cchhhccHHHHHHHHHHhcCCCcEEEEEecccCC--hHHHHhhhcCC-
Confidence 11 1112333445566754 44532 2334444444444444444678888888877641 11222222111
Q ss_pred CccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 149 ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
-+++ .+.+|=+.+++.|.+.+..
T Consensus 155 --------v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 155 --------VYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred --------EEEE---EccchhhHHHHHHHHHhcc
Confidence 1332 5666667888888887654
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.6e-09 Score=75.78 Aligned_cols=99 Identities=24% Similarity=0.349 Sum_probs=63.4
Q ss_pred ccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-CHHHHHHHhC--CCc
Q 030000 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLG--LES 150 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~--~~~ 150 (184)
.++|......+.+.++++++|+|+.+...- ....+.... .+.|+++|+||+|+.+.. ..++..+.+. ...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s--~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS--LIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCC--ccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence 567778888888899999999999764311 111222221 267999999999997543 2222222110 000
Q ss_pred cCCCceeEEEeeeccCCCHHHHHHHHHHH
Q 030000 151 ITDREVCCYMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
.......++.+||++|.|++++++.+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 11111248899999999999999999764
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-08 Score=70.11 Aligned_cols=80 Identities=24% Similarity=0.341 Sum_probs=57.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEee------------------cCEEEEEEEcCCcc---
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTK------------------GNVTIKLWDLGGQR--- 75 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~------------------~~~~~~~~d~~g~~--- 75 (184)
.++++++|.|++|||||.|++.......... .|+..+...... ....+.++|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 3689999999999999999999777543333 366655554321 12558899998822
Q ss_pred ----chhHhHHhhccCCCEEEEEEeCC
Q 030000 76 ----RFRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 76 ----~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
-.....-..++.+|+++-|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 23445556688899999999986
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=69.74 Aligned_cols=155 Identities=19% Similarity=0.158 Sum_probs=88.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----CccceeEEEEeecCEEEEEEEcCC----------ccchhHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI-----PTVGFNMRKVTKGNVTIKLWDLGG----------QRRFRTM 80 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~-----~t~~~~~~~~~~~~~~~~~~d~~g----------~~~~~~~ 80 (184)
..+..++++.|..++|||+|+|.++......... .|..+... .-+..+.++|.|| ..++...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f---~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF---HVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee---eccceEEEEecCCcccccCCccCcchHhHh
Confidence 3456899999999999999999998544322222 22222222 2345688899999 3334445
Q ss_pred HHhhccCC---CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--H----HHHHH-HhCC-C
Q 030000 81 WERYCRGV---SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--K----QALVD-QLGL-E 149 (184)
Q Consensus 81 ~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~----~~~~~-~~~~-~ 149 (184)
...|+.+. -.+++++|+..+- +........++. ..++|..+|+||+|...... . ..+.. ..++ .
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~g---e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLG---ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHh---hcCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence 55555433 3466677775432 222222222332 36899999999999755321 0 00111 0010 0
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
.......|-+.+|+.++.|+++++-.|..
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhh
Confidence 11112334456999999999888755543
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.9e-08 Score=70.15 Aligned_cols=79 Identities=22% Similarity=0.224 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCC--CCCccceeEEEEeecC-----------------EEEEEEEcCCccc---
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGY-SED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRR--- 76 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~-~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~--- 76 (184)
++++++|.|++|||||++.+.+... ... +..|.......+...+ ..+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999998765 332 2234555555444332 4688999999543
Q ss_pred ----hhHhHHhhccCCCEEEEEEeCC
Q 030000 77 ----FRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 77 ----~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
.....-..++++|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2334555688999999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.75 E-value=7e-08 Score=62.51 Aligned_cols=54 Identities=28% Similarity=0.342 Sum_probs=38.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC-C--CCCCCccceeEEEEeecCEEEEEEEcCC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY-S--EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~d~~g 73 (184)
....+++++|.+|+|||||+|.+.+... . .....|.......+ ...+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCC
Confidence 3568899999999999999999997553 2 22233444433332 23589999998
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.4e-08 Score=68.92 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=66.7
Q ss_pred cCCcc-chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC
Q 030000 71 LGGQR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE 149 (184)
Q Consensus 71 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 149 (184)
.|||. +........++.+|++++|+|+.++.+... ..+...+ .+.|.++|+||+|+.+....+...+.+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~- 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEE- 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHH-
Confidence 46765 344566677899999999999976544322 2223232 25899999999999643222333332311
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
...+++.+|++++.|++++.+.+.+.++.
T Consensus 79 ----~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 ----QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred ----cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12368899999999999999988877643
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.6e-08 Score=61.94 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=50.6
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEE
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
....++++|++++|+|+.++.+.. ...+...+.... .++|+++++||+|+.+.....+..+.+... ...+++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~-----~~~ii~ 76 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKE-----GIVVVF 76 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhc-----CCeEEE
Confidence 345678899999999998765443 112233332221 468999999999996544333333333221 246889
Q ss_pred eeeccCCC
Q 030000 161 ISCKDSIN 168 (184)
Q Consensus 161 ~Sa~~~~~ 168 (184)
+||+++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99988764
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-07 Score=66.95 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=73.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC---------CC------------CCccceeEEEE-----------------e
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSE---------DM------------IPTVGFNMRKV-----------------T 60 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~---------~~------------~~t~~~~~~~~-----------------~ 60 (184)
.-.|+++|++|+||||++..+...-... .. ..-.+...... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999886210000 00 00011111110 1
Q ss_pred ecCEEEEEEEcCCccchhH----hHHhh---c-----cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEE
Q 030000 61 KGNVTIKLWDLGGQRRFRT----MWERY---C-----RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 128 (184)
Q Consensus 61 ~~~~~~~~~d~~g~~~~~~----~~~~~---~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~ 128 (184)
..++.+.++||||...... ..... + ...+..++|+|++.. ...... ...+... -.+.-+++
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giIl 266 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGIIL 266 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEEE
Confidence 2457899999999543221 11111 1 236778999999743 223332 2222211 12346779
Q ss_pred eCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 129 NKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 129 nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
||.|...... .-...... ..|+.+++ +|++++++.
T Consensus 267 TKlD~t~~~G~~l~~~~~~--------~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 267 TKLDGTAKGGVVFAIADEL--------GIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred ECCCCCCCccHHHHHHHHH--------CCCEEEEe--CCCChhhCc
Confidence 9999654322 12222222 23677776 788877654
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=67.31 Aligned_cols=82 Identities=23% Similarity=0.396 Sum_probs=59.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeec-----------------CEEEEEEEcCCccc-
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKG-----------------NVTIKLWDLGGQRR- 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~-----------------~~~~~~~d~~g~~~- 76 (184)
.+..+++++|.|++|||||+|.+.+........| |++.+...+... ...++++|.+|.-.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3568999999999999999999998777655444 666555544322 25589999988332
Q ss_pred ------hhHhHHhhccCCCEEEEEEeCC
Q 030000 77 ------FRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 77 ------~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
.....-..++.+|+++=|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 3334455678899998888875
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=68.69 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=52.2
Q ss_pred CEEEEEEEcCCccchh----HhHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 63 NVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
++.+.++||+|..... ...... ..+.+.+++|+|+.......... ..+... - ..--+++||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a---~~f~~~---~-~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA---REFNEA---V-GIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH---HHHHhc---C-CCCEEEEeeecCCCC
Confidence 4679999999965322 122222 22578899999986543222222 222211 1 124567899998654
Q ss_pred cCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 137 LSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 137 ~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
... -...... ..|+.+++ +|++++++.
T Consensus 295 ~G~~ls~~~~~--------~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GGAALSIAYVI--------GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ccHHHHHHHHH--------CcCEEEEe--CCCChhhcc
Confidence 322 2222222 23577776 788887765
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=71.53 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=69.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+++-|+|+|++|+|||||++.+...-.........| ....+..+...+++.++|.. .+.+....+-+|.+++++|.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-PiTvvsgK~RRiTflEcp~D---l~~miDvaKIaDLVlLlIdg 143 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-PITVVSGKTRRITFLECPSD---LHQMIDVAKIADLVLLLIDG 143 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-ceEEeecceeEEEEEeChHH---HHHHHhHHHhhheeEEEecc
Confidence 567788999999999999999973222111111122 23345567788999999932 23334445668999999998
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCccccc
Q 030000 98 ADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEAL 137 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~ 137 (184)
+-.--.+. ..+..++.. .+.| ++-|+|..|+....
T Consensus 144 nfGfEMET--mEFLnil~~---HGmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 144 NFGFEMET--MEFLNILIS---HGMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred ccCceehH--HHHHHHHhh---cCCCceEEEEeecccccCh
Confidence 75433322 222333333 3444 66778999998754
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.6e-08 Score=62.59 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
-.++++|++|+|||||+|.+.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999965
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=68.55 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=37.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--CCccceeEEEEeecCEEEEEEEcCCc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDM--IPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~ 74 (184)
....+++|+|-|++|||||||+|.+.... .+. +.|.+.....+.. .+.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCc
Confidence 45689999999999999999999976652 111 2233332222222 3889999994
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-07 Score=60.21 Aligned_cols=21 Identities=48% Similarity=0.612 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030000 22 LSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~ 42 (184)
++++|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999999854
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.2e-07 Score=64.67 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=53.5
Q ss_pred cCEEEEEEEcCCccchhHhH----H---hhc-----cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEe
Q 030000 62 GNVTIKLWDLGGQRRFRTMW----E---RYC-----RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~----~---~~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~n 129 (184)
.++.+.++||||........ . ... ..+|.+++|+|++. ....... ...+.+.. .+.-+++|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~-~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQ-AKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHH-HHHHHhhC----CCCEEEEE
Confidence 45789999999965432221 1 111 13788999999964 3333332 23333221 23467789
Q ss_pred CCCcccccC-HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 130 KIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 130 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|.|...... .-......+ .|+.+++ +|++++++.
T Consensus 226 KlDe~~~~G~~l~~~~~~~--------~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYELK--------LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCccHHHHHHHHHC--------cCEEEEe--CCCChHhCc
Confidence 999755432 222222222 3577776 788877664
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-07 Score=60.75 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=62.8
Q ss_pred EEEEEEEcCCccchhH------hHHhhccCC---CEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCc
Q 030000 64 VTIKLWDLGGQRRFRT------MWERYCRGV---SAILYVVDAAD-RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~------~~~~~~~~~---~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 133 (184)
-.+.++|+|||-+... ....++++. -++++++|..- -++..-+...+..+. ..-.-.+|.|=+++|.|+
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAls-AMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALS-AMISLEVPHINVLSKMDL 176 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHH-HHHHhcCcchhhhhHHHH
Confidence 4478999999765432 222333332 24777777641 112222222222221 111246899999999999
Q ss_pred ccccCHHHHHHHhCCCccC---------------------------CCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 134 SEALSKQALVDQLGLESIT---------------------------DREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
......+++.+.+.-.... ..-+.+++....+.+.|+.++..|-..++
T Consensus 177 lk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 177 LKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred hhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 8875555554444321110 12345666666666667777766665554
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-07 Score=67.89 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=34.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC-C---------CCccceeEEEEeecCEEEEEEEcCCccchh
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSED-M---------IPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~-~---------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 78 (184)
++++|.+|+|||||+|+|++...... . ..|.......+..+ ..++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 68999999999999999996542211 1 11223333333322 2489999976543
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.6e-07 Score=75.19 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=63.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCC----CCcccee-EEEEe-ecCEEEEEEEcCC----cc----chhHhHHhhc--
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFN-MRKVT-KGNVTIKLWDLGG----QR----RFRTMWERYC-- 85 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~~----~~t~~~~-~~~~~-~~~~~~~~~d~~g----~~----~~~~~~~~~~-- 85 (184)
.+|+|++|+||||++... +-.++-.. ..+.+.. ...++ +-.-+-.++|++| ++ .....|..++
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 589999999999999987 33443211 1111100 00011 1112356899999 21 2333444443
Q ss_pred -------cCCCEEEEEEeCCCCCC--HH-------HHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 86 -------RGVSAILYVVDAADRDS--VP-------IARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 86 -------~~~~~~i~v~d~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+..+++|+++|+.+--. .. .+...+.++.... ....|+.+++||+|+..
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhhc
Confidence 34799999999864321 11 2222233333232 35799999999999875
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.3e-07 Score=62.70 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=52.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEeecCEEEEEEEcCCccch-------hHhHHhhccCCCE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRRF-------RTMWERYCRGVSA 90 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~-------~~~~~~~~~~~~~ 90 (184)
.++.++|-|.+||||++..+.+...+.... +|.......++...-++++.|.||.-+. ........+-|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 589999999999999999997433322111 1222222234567788999999994321 1223334566889
Q ss_pred EEEEEeCCCC
Q 030000 91 ILYVVDAADR 100 (184)
Q Consensus 91 ~i~v~d~~~~ 100 (184)
+++|.|+..+
T Consensus 140 i~~vld~~kp 149 (358)
T KOG1487|consen 140 IFIVLDVLKP 149 (358)
T ss_pred EEEEeeccCc
Confidence 9999998753
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-07 Score=59.93 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=36.0
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCC
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 132 (184)
++.+.++||+|.... ...++..+|-++++..+.-.+.+.-... .. ...--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~------~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA---GI------MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh---hH------hhhcCEEEEeCCC
Confidence 578999999986432 2346777998999888753222222111 11 1233478899987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.5e-07 Score=65.26 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=58.8
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
..++|.+++|+++..+-....+..++..... .+++.++|+||+|+.+. .++..+.+... ...++++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 5789999999999755555556666555433 36788999999999754 21222222111 234579999999
Q ss_pred cCCCHHHHHHHHH
Q 030000 165 DSINIDAVIDWLI 177 (184)
Q Consensus 165 ~~~~i~~l~~~i~ 177 (184)
+|.|++++.+++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998875
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.3e-07 Score=66.79 Aligned_cols=54 Identities=22% Similarity=0.186 Sum_probs=34.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC--------CCCCCCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGY--------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
..++.++|.+|+|||||+|+++.... ...++.|.+.....+.. ...++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC---CcEEEECCCcc
Confidence 45899999999999999999985431 11122343332222221 14799999953
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-06 Score=60.03 Aligned_cols=133 Identities=18% Similarity=0.152 Sum_probs=76.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC--------------CC---CCCccceeEEEEe----------------------ec
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYS--------------ED---MIPTVGFNMRKVT----------------------KG 62 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~--------------~~---~~~t~~~~~~~~~----------------------~~ 62 (184)
.++.|--|||||||+++++..... .. .....+.....+. ..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 468899999999999999943321 01 0111111122211 12
Q ss_pred CEEEEEEEcCCccchhHhHHhhcc--------CCCEEEEEEeCCCCCCHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCR--------GVSAILYVVDAADRDSVPI-ARSELHELLMKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~ 133 (184)
.....++++.|...-......+.. ..|++|.|+|+........ ....+...+.. --++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccC
Confidence 366778888885554433333322 3578999999875433222 23333333333 23888999999
Q ss_pred ccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 134 SEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.++...+.....+... ....+++.+|.
T Consensus 158 v~~~~l~~l~~~l~~l---np~A~i~~~~~ 184 (323)
T COG0523 158 VDAEELEALEARLRKL---NPRARIIETSY 184 (323)
T ss_pred CCHHHHHHHHHHHHHh---CCCCeEEEccc
Confidence 8877655555555432 33456777765
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.3e-07 Score=66.66 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=35.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC------C--CCCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGY------S--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~------~--~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
..++.++|.+|+|||||+|++++... . ..++.|.+.. .+.. +-.+.++||||...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~-~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPL-DDGHSLYDTPGIIN 216 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEe-CCCCEEEECCCCCC
Confidence 36899999999999999999996432 1 1122233322 2222 12357999999543
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-07 Score=61.76 Aligned_cols=78 Identities=17% Similarity=0.134 Sum_probs=43.9
Q ss_pred CEEEEEEEcCCccchhHh--HHh---hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 63 NVTIKLWDLGGQRRFRTM--WER---YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~--~~~---~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
.....++++.|...-... ... ..-..+.+|.|+|+.+-.........+...+...+ ++++||+|+.+..
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh
Confidence 456778888885443333 111 12246889999999653333334444444444433 8889999998876
Q ss_pred -CHHHHHHHh
Q 030000 138 -SKQALVDQL 146 (184)
Q Consensus 138 -~~~~~~~~~ 146 (184)
..+.+.+.+
T Consensus 158 ~~i~~~~~~i 167 (178)
T PF02492_consen 158 QKIERVREMI 167 (178)
T ss_dssp --HHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 324554444
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.3e-07 Score=65.60 Aligned_cols=97 Identities=23% Similarity=0.268 Sum_probs=56.8
Q ss_pred chhHhHHhhccCCC-EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCC--Ccc
Q 030000 76 RFRTMWERYCRGVS-AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGL--ESI 151 (184)
Q Consensus 76 ~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~--~~~ 151 (184)
.|...... +...+ .+++|+|+.+.. ......+.... .+.|+++|+||+|+.+... .++..+.... ...
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 44443333 44455 899999997643 11122222222 2678999999999975322 2222211110 001
Q ss_pred CCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 152 TDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
......++.+||++|.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 11112588999999999999999997654
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-06 Score=63.66 Aligned_cols=110 Identities=18% Similarity=0.208 Sum_probs=61.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc-----C-CC---CCCC------------CCccceeEEEEe-----------------
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT-----G-GY---SEDM------------IPTVGFNMRKVT----------------- 60 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~-----~-~~---~~~~------------~~t~~~~~~~~~----------------- 60 (184)
+..|+++|++||||||++..+.. + +. .... ....+.......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45688999999999999998861 1 10 0000 001111111110
Q ss_pred ecCEEEEEEEcCCccchhH----hHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 61 KGNVTIKLWDLGGQRRFRT----MWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 61 ~~~~~~~~~d~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
..++.+.++||||...... ..... ..+.+-+++|+|+.....-......+.. . -.+.-+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~---~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD---S----VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh---c----cCCcEEEEECccCC
Confidence 1357899999999554322 11121 2346789999998754333222222221 1 23456779999975
Q ss_pred c
Q 030000 135 E 135 (184)
Q Consensus 135 ~ 135 (184)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 4
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.2e-07 Score=66.21 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=33.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC---CC-------CccceeEEEEeecCEEEEEEEcCCccc
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSED---MI-------PTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~---~~-------~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
++|+|++|+|||||+|+|++...... .. .|.......+..+ ..++||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 78999999999999999996432211 11 2333333333222 26899999544
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.4e-07 Score=62.01 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC----------CCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSE----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~----------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
.++++|.+|+|||||+|++.+..... ....|.......+. + -.++||||...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~--~--~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH--G--GLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC--C--cEEEeCCCccc
Confidence 67899999999999999999643211 11123344444342 2 37899999654
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=61.25 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC----------CCCCCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~----------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
..+++|++|+|||||+|++.+.... ...-+|.......+..++ .++||||...+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 4568899999999999999852211 111123333334443332 57899997554
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-06 Score=57.32 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=38.3
Q ss_pred CEEEEEEEcCCccchh----HhHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 63 NVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
++.+.++|+||..... ...... ....+.+++|+|+.... . .......+.... + ..-++.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~-~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--D-AVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--H-HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 5678899999964321 111111 23488999999986432 2 223333333222 2 24566799997553
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-06 Score=60.64 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------CCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDM----------IPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
-.++++|++|+|||||+|.+.+....... ..|........... ..++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 46899999999999999999865432111 01222222222212 258999998664
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.4e-07 Score=66.47 Aligned_cols=112 Identities=20% Similarity=0.288 Sum_probs=73.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC------------CCCCCC--CCccceeEEE--------------------EeecC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG------------GYSEDM--IPTVGFNMRK--------------------VTKGN 63 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~------------~~~~~~--~~t~~~~~~~--------------------~~~~~ 63 (184)
+.-++.|+.+...|||||...+... +|.... .+..++.... -+..+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 4467889999999999999999721 111110 0111111111 11235
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
+-++++|.||+-+|.+..-..++-.|+.++|+|.-+.--.+ ....+.+.+. .++.-+++.||.|..
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~----ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIA----ERIKPVLVMNKMDRA 163 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHH----hhccceEEeehhhHH
Confidence 88999999999999999999999999999999986532222 2222333333 245556779999953
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=5e-07 Score=65.41 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=46.8
Q ss_pred hHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee-EEEEeecCEEEEEEEcCCc
Q 030000 3 FLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN-MRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~d~~g~ 74 (184)
|++.+++.-+-...++++.|+++|-|++||||+||+|...+.- ...|..|.. .+.+-.-...+.++|+||.
T Consensus 291 lI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVC-kvAPIpGETKVWQYItLmkrIfLIDcPGv 362 (572)
T KOG2423|consen 291 LIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVC-KVAPIPGETKVWQYITLMKRIFLIDCPGV 362 (572)
T ss_pred HHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccc-cccCCCCcchHHHHHHHHhceeEecCCCc
Confidence 5555666666667889999999999999999999999765542 222222211 1111112245788999994
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-05 Score=58.22 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=37.8
Q ss_pred EEEEEEEcCCccchhHhHHhhcc--------CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCR--------GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
....++++.|...-......++. ..++++.|+|+.+..............+.. --++++||+|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 55678889887655444443321 247899999986432211111111112222 2378899999876
Q ss_pred c
Q 030000 136 A 136 (184)
Q Consensus 136 ~ 136 (184)
.
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 4
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.9e-07 Score=59.44 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=35.8
Q ss_pred cCEEEEEEEcCCccchhH----hHHhhc--cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 62 GNVTIKLWDLGGQRRFRT----MWERYC--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+++++.++||||...... .+..++ ...+-+++|++++... ..+. ....+.... +. -=+++||.|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~~---~~-~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEAF---GI-DGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHHS---ST-CEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhcc---cC-ceEEEEeecCCC
Confidence 347799999999544322 122211 2467889999986532 2232 222222221 22 245589999754
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.1e-05 Score=49.75 Aligned_cols=21 Identities=43% Similarity=0.639 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++|+++|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999865
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.7e-06 Score=59.33 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
-.++++|++|+|||||+|.+++..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999998654
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.8e-05 Score=55.34 Aligned_cols=23 Identities=13% Similarity=0.466 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..+=|+|+|+..+|||||+++|.
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CceEEEeecCcccCchhHHHHHH
Confidence 46789999999999999999997
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.5e-06 Score=61.61 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=36.7
Q ss_pred cCEEEEEEEcCCccchh----HhHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 62 GNVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
.++.+.++||||..... ...... .-..+.+++|+|+... +........+.... ++ .-+++||.|...
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i-~giIlTKlD~~~ 254 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GL-TGVILTKLDGDA 254 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CC-CEEEEeCccCcc
Confidence 34779999999954321 111111 2256778999998642 33333333332221 12 245679999644
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.7e-06 Score=59.98 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.++++|++|+||||++..+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999974
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=60.06 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=41.8
Q ss_pred cCEEEEEEEcCCccchh----HhHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 62 GNVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
.++.+.++||||..... ...... .-+.+.+++|+|+... .........+.... ++ .=++.||.|...
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~i-~giIlTKlD~~~ 253 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---GL-TGVVLTKLDGDA 253 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---CC-CEEEEeCccCcc
Confidence 34779999999953321 111111 2347889999998643 33333333332221 22 245589999543
Q ss_pred cc-CHHHHHHHhC
Q 030000 136 AL-SKQALVDQLG 147 (184)
Q Consensus 136 ~~-~~~~~~~~~~ 147 (184)
.. ....+....+
T Consensus 254 ~~G~~lsi~~~~~ 266 (428)
T TIGR00959 254 RGGAALSVRSVTG 266 (428)
T ss_pred cccHHHHHHHHHC
Confidence 22 2333444443
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=98.13 E-value=4e-05 Score=55.95 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=45.3
Q ss_pred CEEEEEEEcCCccchhHhHHhhc-------cCCCEEEEEEeCCCCCC--H--------------------HHHHHHHHHH
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYC-------RGVSAILYVVDAADRDS--V--------------------PIARSELHEL 113 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~-------~~~~~~i~v~d~~~~~~--~--------------------~~~~~~~~~~ 113 (184)
.....++++.|...-......+. -..+++|.|+|+.+... + ......+...
T Consensus 92 ~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q 171 (341)
T TIGR02475 92 RPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQ 171 (341)
T ss_pred CCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHH
Confidence 35677889998665544444331 13578999999864211 0 0011122222
Q ss_pred hcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhC
Q 030000 114 LMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG 147 (184)
Q Consensus 114 ~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 147 (184)
+.. .-++++||+|+.+....+.+.+.+.
T Consensus 172 i~~------AD~IvlnK~Dl~~~~~l~~~~~~l~ 199 (341)
T TIGR02475 172 LAC------ADLVILNKADLLDAAGLARVRAEIA 199 (341)
T ss_pred HHh------CCEEEEeccccCCHHHHHHHHHHHH
Confidence 222 2378899999988766655555543
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1e-05 Score=58.62 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=35.9
Q ss_pred EeecCEEEEEEEcCCccc-hhHhHHhh-----ccCCCEEEEEEeCCCCCCHHHHHHHHHHH
Q 030000 59 VTKGNVTIKLWDLGGQRR-FRTMWERY-----CRGVSAILYVVDAADRDSVPIARSELHEL 113 (184)
Q Consensus 59 ~~~~~~~~~~~d~~g~~~-~~~~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 113 (184)
+..+++.+.|+||.|... -.++.... .-+.|-+|+|.|++-.+.-......+...
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 345679999999999432 22222221 23578999999998776666666555554
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-05 Score=58.58 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|+.|+||||++..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHH
Confidence 34678999999999999999996
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.6e-05 Score=43.94 Aligned_cols=97 Identities=18% Similarity=0.072 Sum_probs=55.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh-HHhhccCCCEEEEEEeCCCC
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM-WERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~ 100 (184)
+++.|..|+||||+...+...-.. .+.....++ .+.++|+++....... .......+|.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK------RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 578899999999999888632111 122222222 7889999986543321 24456678999999987643
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcEEEEEe
Q 030000 101 DSVPIARSELHELLMKPSLSGIPLLVLGN 129 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~iivv~n 129 (184)
+....................+..+++|
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 -AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred -hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3333333322233333334455555554
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.2e-06 Score=60.64 Aligned_cols=65 Identities=26% Similarity=0.374 Sum_probs=42.7
Q ss_pred HHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecCEEEEEEEcCC
Q 030000 7 ILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g 73 (184)
+.++-+.-..++.++++|+|-|++||||+||+|..... -..+++.|.+. ..+ ..+-.+.+.|.||
T Consensus 240 lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV-~Ldk~i~llDsPg 306 (435)
T KOG2484|consen 240 LGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEV-KLDKKIRLLDSPG 306 (435)
T ss_pred hcCcccccccCcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhhe-eccCCceeccCCc
Confidence 33333333456789999999999999999999986655 22233333222 222 2344688999999
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.4e-05 Score=51.43 Aligned_cols=64 Identities=25% Similarity=0.325 Sum_probs=38.7
Q ss_pred EEEEEEEcC-CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 64 VTIKLWDLG-GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 64 ~~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
+.+.++||- |.+.|.. ...+++|.++.|+|++. .++....+ ..++..... -.++.+|+||+|..
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~-~sl~taer-i~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHHhC--CceEEEEEeeccch
Confidence 446666663 4444332 33567999999999863 34443333 233333311 37899999999964
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.3e-05 Score=58.91 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=58.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC------CC-----CCC-C-----------CccceeEEEEe-----------ecC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG------YS-----EDM-I-----------PTVGFNMRKVT-----------KGN 63 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~------~~-----~~~-~-----------~t~~~~~~~~~-----------~~~ 63 (184)
+.-.|+++|+.|+||||++..|...- .. ... . ...++...... ..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 34578899999999999998886310 00 000 0 01111111111 135
Q ss_pred EEEEEEEcCCccchhHhHH------hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 64 VTIKLWDLGGQRRFRTMWE------RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+.+.++||+|......... .... ....++|++.+. +.......+..+.. ..+.-+++||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 7899999999543222111 0111 234567777753 34444444333321 235668899999744
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.3e-05 Score=59.05 Aligned_cols=96 Identities=20% Similarity=0.259 Sum_probs=55.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc----CCCCC------CCCC-----------ccceeEEE-----------------E
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT----GGYSE------DMIP-----------TVGFNMRK-----------------V 59 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~----~~~~~------~~~~-----------t~~~~~~~-----------------~ 59 (184)
++..|+++|..||||||.+-.|.. .+... .+.| ..+..+.. .
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 467799999999999998877751 11000 0000 01111111 1
Q ss_pred eecCEEEEEEEcCCccchhH-hH---Hh--hccCCCEEEEEEeCCCCCCHHHHHHHHHHH
Q 030000 60 TKGNVTIKLWDLGGQRRFRT-MW---ER--YCRGVSAILYVVDAADRDSVPIARSELHEL 113 (184)
Q Consensus 60 ~~~~~~~~~~d~~g~~~~~~-~~---~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 113 (184)
....+++.|+||+|...... ++ .. ..-+.|=+++|+|+.-.+.-.+....+.+.
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~ 238 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEA 238 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhh
Confidence 12347899999999443322 11 11 134678899999998776666555555544
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.2e-05 Score=55.44 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=58.3
Q ss_pred ccCCCEEEEEEeCCCCC-CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 85 CRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
..+.|-.++++.+.+|+ +...+.+++..... .++..++++||+|+.+.++... .+. ...+....++++.+|+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~gi~pvIvlnK~DL~~~~~~~~-~~~--~~~y~~~gy~v~~~s~ 149 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----GGIEPVIVLNKIDLLDDEEAAV-KEL--LREYEDIGYPVLFVSA 149 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH----cCCcEEEEEEccccCcchHHHH-HHH--HHHHHhCCeeEEEecC
Confidence 34466666767666554 44444554444422 5788888899999988766553 111 1123344668999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 030000 164 KDSINIDAVIDWLIKH 179 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~ 179 (184)
+++++++++.+.+...
T Consensus 150 ~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 150 KNGDGLEELAELLAGK 165 (301)
T ss_pred cCcccHHHHHHHhcCC
Confidence 9999999999887654
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.8e-06 Score=55.34 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=17.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
+-.+|+|+|||||||.++-..
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 445799999999999887665
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00013 Score=51.71 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=67.3
Q ss_pred HHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccch------
Q 030000 4 LDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF------ 77 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~------ 77 (184)
|+.+.+.+..-...+-..++++|++|.|||+++++|......... .. ...+.+..+.+|.....
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d-~~---------~~~~PVv~vq~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD-ED---------AERIPVVYVQMPPEPDERRFYSA 115 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC-CC---------CccccEEEEecCCCCChHHHHHH
Confidence 344444444433345577999999999999999999865433211 10 12335666666652221
Q ss_pred ------------------hHhHHhhccCCCEEEEEEeCCC---CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 030000 78 ------------------RTMWERYCRGVSAILYVVDAAD---RDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 78 ------------------~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 131 (184)
.......++....=++++|=-. ..+.......+..+....+.-++|++.+|++-
T Consensus 116 IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 116 ILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 1122234566777888888421 22333334444433333444689999998764
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.9e-05 Score=56.36 Aligned_cols=111 Identities=16% Similarity=0.238 Sum_probs=62.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc----CC-----------------------------CCC-CCCCcc-ceeEEE---E
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT----GG-----------------------------YSE-DMIPTV-GFNMRK---V 59 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~----~~-----------------------------~~~-~~~~t~-~~~~~~---~ 59 (184)
+++-|+++|-.|+||||-+-.+.. .. ... .++... ...+.. -
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 478889999999999998888761 00 000 000000 000000 1
Q ss_pred eecCEEEEEEEcCCccchhH-h------HHhhccCC-----CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEE
Q 030000 60 TKGNVTIKLWDLGGQRRFRT-M------WERYCRGV-----SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVL 127 (184)
Q Consensus 60 ~~~~~~~~~~d~~g~~~~~~-~------~~~~~~~~-----~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv 127 (184)
...++.+.++||+|.-.... + +.+.+... +-+++++|++-.+.--...+.+.+... +. =++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~------l~-GiI 290 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG------LD-GII 290 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC------Cc-eEE
Confidence 23568899999999433221 1 11222222 338888899877655555555555533 22 355
Q ss_pred EeCCCccc
Q 030000 128 GNKIDKSE 135 (184)
Q Consensus 128 ~nK~D~~~ 135 (184)
+||.|-..
T Consensus 291 lTKlDgtA 298 (340)
T COG0552 291 LTKLDGTA 298 (340)
T ss_pred EEecccCC
Confidence 89999644
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0001 Score=54.24 Aligned_cols=110 Identities=16% Similarity=0.185 Sum_probs=58.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-----------------------EE-----------eecCE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-----------------------KV-----------TKGNV 64 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-----------------------~~-----------~~~~~ 64 (184)
.-.|+++||.|+||||.+-.|...-.-......+++... .. .-.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 556789999999999977776522110111122221111 00 12357
Q ss_pred EEEEEEcCCccchh----HhHHhhccCC--CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 65 TIKLWDLGGQRRFR----TMWERYCRGV--SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 65 ~~~~~d~~g~~~~~----~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
.+.++||.|...+. .....++..+ .-+.+|++++. ....+...+..+ ..-++. =+++||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f----~~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQF----SLFPID-GLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHh----ccCCcc-eeEEEcccccC
Confidence 89999999965433 2333333332 23556777753 233344443333 222222 24479999644
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.6e-05 Score=58.58 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=19.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
++..|+++|++|+||||++..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35678999999999999988875
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.1e-05 Score=60.32 Aligned_cols=51 Identities=24% Similarity=0.372 Sum_probs=36.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc----eeEEEEeecCEEEEEEEcCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG----FNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~d~~g 73 (184)
.+.|++||-|++||||+||.|.+.+.. +...|.| +.+..+ .-.+-+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~l---s~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFL---SPSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEc---CCCceecCCCC
Confidence 589999999999999999999877653 2233333 222222 23477899999
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.4e-05 Score=58.32 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.|+++|+.|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999997753
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.9e-06 Score=50.53 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.|+|.|++||||||+++.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999973
|
... |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00032 Score=44.42 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
..--+++.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999998443
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.3e-06 Score=53.23 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
+|+|+|++|||||||.+.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999973
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.7e-05 Score=57.24 Aligned_cols=25 Identities=12% Similarity=0.452 Sum_probs=22.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..+.=||+++|.+||||||+++.++
T Consensus 375 I~kGekVaIvG~nGsGKSTilr~Ll 399 (591)
T KOG0057|consen 375 IPKGEKVAIVGSNGSGKSTILRLLL 399 (591)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999998
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00021 Score=45.41 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=59.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCC
Q 030000 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS 102 (184)
Q Consensus 24 v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 102 (184)
.-|..|+||||+.-.+...-... ...+.-.+.- ....-.+.+.++|+|+... ......+..+|.++++.+.+ ..+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~-~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s 80 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKL-GKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTS 80 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhH
Confidence 55789999999877765211000 0000000000 0001117899999997532 33346688899999999985 334
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCc
Q 030000 103 VPIARSELHELLMKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 133 (184)
+......+..+... ....++.+++|+++-
T Consensus 81 ~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~ 109 (139)
T cd02038 81 ITDAYALIKKLAKQ--LRVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHHHHHHHHh--cCCCCEEEEEeCCCC
Confidence 44444444444322 135577899999974
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.8e-05 Score=54.23 Aligned_cols=25 Identities=32% Similarity=0.672 Sum_probs=22.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.+..+.|+|-||+|||||+|++..
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~ 165 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRN 165 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHH
Confidence 4689999999999999999999874
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.5e-05 Score=57.98 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
..++++|++||||||++..+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA 244 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLA 244 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999887
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=1e-05 Score=53.21 Aligned_cols=21 Identities=29% Similarity=0.725 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
.+|+|+|++|||||||...+.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 379999999999999999986
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.1e-05 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.+|+|+|++||||||+...+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.7e-05 Score=42.51 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
..+|.|+.||||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999886
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00023 Score=54.63 Aligned_cols=37 Identities=30% Similarity=0.524 Sum_probs=27.1
Q ss_pred HHHHHHHhhhhccc-eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 5 DSILNWLRSLFFKQ-EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.+.+|+.++.... .-.+++.|++|+||||+++.+.+
T Consensus 24 ~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 24 EQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 45566665553222 45688999999999999999974
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0002 Score=53.95 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=36.2
Q ss_pred CEEEEEEEcCCccchh----HhHHhhcc---CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 63 NVTIKLWDLGGQRRFR----TMWERYCR---GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~----~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
++.+.++||||..... ......+. ...-+++|++++. ....+...+..+ .. -+ +-=+++||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f-~~---~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHF-SR---LP-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHh-CC---CC-CCEEEEecccccc
Confidence 4789999999954332 22233333 2345678888753 233333333333 11 12 2257789999744
|
|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.7e-05 Score=52.89 Aligned_cols=38 Identities=16% Similarity=0.455 Sum_probs=30.5
Q ss_pred hHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 3 FLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+++.+.++.-.......+-|+|.|.+|||||||.+.+.
T Consensus 6 ~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~ 43 (223)
T PRK06696 6 LIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELA 43 (223)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 45566666655555678999999999999999999887
|
|
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.3e-05 Score=56.47 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=68.5
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHh----cCCC------------------------------------CCCCCCccc-
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIA----TGGY------------------------------------SEDMIPTVG- 53 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~----~~~~------------------------------------~~~~~~t~~- 53 (184)
..++++-|+++|-.|+||||-+-.+. ..++ ...|+....
T Consensus 374 ~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~ 453 (587)
T KOG0781|consen 374 RRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAG 453 (587)
T ss_pred hcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHH
Confidence 44578999999999999999777665 1110 000110000
Q ss_pred e---eEEEEeecCEEEEEEEcCCccchhH----hHHhh--ccCCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCCCCCc
Q 030000 54 F---NMRKVTKGNVTIKLWDLGGQRRFRT----MWERY--CRGVSAILYVVDAAD-RDSVPIARSELHELLMKPSLSGIP 123 (184)
Q Consensus 54 ~---~~~~~~~~~~~~~~~d~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 123 (184)
+ ....-...++.+.++||+|...... ....+ ....|.+++|-.+-- .++.+.+..+-..+... ..++.-
T Consensus 454 vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~-~~~r~i 532 (587)
T KOG0781|consen 454 VAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADH-STPRLI 532 (587)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcC-CCcccc
Confidence 0 0000124568899999999554332 22222 345789999887643 34555555544444333 333333
Q ss_pred EEEEEeCCCccc
Q 030000 124 LLVLGNKIDKSE 135 (184)
Q Consensus 124 iivv~nK~D~~~ 135 (184)
--++++|+|...
T Consensus 533 d~~~ltk~dtv~ 544 (587)
T KOG0781|consen 533 DGILLTKFDTVD 544 (587)
T ss_pred ceEEEEeccchh
Confidence 456789999654
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0011 Score=44.00 Aligned_cols=67 Identities=18% Similarity=0.105 Sum_probs=47.7
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
..+.+.++|+|+.... .....+..+|.+++++..+ ..+.......+..+.. .+.|+.+++||+|...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLERAVELVRH----FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCc
Confidence 5688999999975432 3345567899999999987 4466666666554432 2567889999999754
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00044 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.-.++++|+.||||||++..+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34457899999999999999886
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.3e-05 Score=53.76 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-|+++|++|||||||++.+.+
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999974
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00012 Score=38.40 Aligned_cols=44 Identities=30% Similarity=0.381 Sum_probs=25.8
Q ss_pred CCCEEEEEEeCCCCC--CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCC
Q 030000 87 GVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 132 (184)
-.++++|++|++... +.+.....+.++...+ .+.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 367899999998644 4555555555554332 3899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00014 Score=60.38 Aligned_cols=112 Identities=21% Similarity=0.233 Sum_probs=61.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC-CC---CccceeEEEEe-ecCEEEEEEEcCC----c----cchhHhHHhh----
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSED-MI---PTVGFNMRKVT-KGNVTIKLWDLGG----Q----RRFRTMWERY---- 84 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~-~~---~t~~~~~~~~~-~~~~~~~~~d~~g----~----~~~~~~~~~~---- 84 (184)
-+|+|++|+||||++..-. .+|+-. .. ...+..+..++ +-.-.-.++||.| + +.....|..+
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 4789999999999887553 222211 00 01111111111 1123356789888 2 1233445533
Q ss_pred -----ccCCCEEEEEEeCCCCCCHHH---------HHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 85 -----CRGVSAILYVVDAADRDSVPI---------ARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 85 -----~~~~~~~i~v~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
.+-.+++|+.+|+.+--+-.. +..-+.++ ...-.-..|+.+++||.|+..
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El-~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQEL-RETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHH-HHhhccCCceEEEEecccccc
Confidence 345799999999864221111 11112222 223335799999999999976
|
|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=97.80 E-value=5.3e-05 Score=53.03 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
|+++|.+||||||+.+.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La 20 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELA 20 (249)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999886
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.9e-05 Score=50.27 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
|+++|++||||||+++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999997
|
... |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.9e-05 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-|+|+|++|||||||++.+-.-
T Consensus 32 e~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999999643
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.5e-05 Score=53.81 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.+..++++|+|++|||||+|+..++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 456799999999999999999999843
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.3e-05 Score=52.61 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
+.=.++++|++|||||||++.+-.-+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 34567899999999999999996433
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.2e-05 Score=48.42 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=34.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
.=.++++|++|||||||++.+.. -..+|.|.-+.+ ++. +.+.+.+.|+.......+..
T Consensus 29 Ge~iaitGPSG~GKStllk~va~-----Lisp~~G~l~f~--Ge~-----vs~~~pea~Rq~VsY~~Q~p 86 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVAS-----LISPTSGTLLFE--GED-----VSTLKPEAYRQQVSYCAQTP 86 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHh-----ccCCCCceEEEc--Ccc-----ccccChHHHHHHHHHHHcCc
Confidence 34678999999999999999973 233444433332 211 22345666666555544433
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.8e-05 Score=49.17 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-+.|+|..|||||||++++..
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 4578999999999999999973
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.9e-05 Score=42.95 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
|++.|++||||||+.+.+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999999973
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00055 Score=50.85 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=58.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC----C-C--------------------CCCccceeEEEE-----------eec
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYS----E-D--------------------MIPTVGFNMRKV-----------TKG 62 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~----~-~--------------------~~~t~~~~~~~~-----------~~~ 62 (184)
+..|+++|++|+||||.+..+...-.. . . +....+...... ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 456889999999999999887621000 0 0 000111111111 124
Q ss_pred CEEEEEEEcCCccchh----HhHHhhccC--CC-EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 63 NVTIKLWDLGGQRRFR----TMWERYCRG--VS-AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~----~~~~~~~~~--~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
++.+.++||+|..... ......+.. .+ -.++|+|++.. ...+...+..+.. - -+-=+++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~----~-~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP----F-SYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC----C-CCCEEEEEeccCCC
Confidence 5789999999954322 122222222 23 57899999754 3334443333311 1 12345689999654
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00024 Score=47.03 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.-.++++|+.|+|||||++.+.+-
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4457889999999999999999754
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=55.59 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
--++++|+.|+||||++..|.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred cEEEEECCCCccHHHHHHHHH
Confidence 457899999999999999887
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00031 Score=49.57 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=24.9
Q ss_pred HHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.+..+.....--|+|.|++||||||+++.++..
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 3444444344446899999999999999998744
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.9e-05 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999743
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00039 Score=45.21 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
++|.|++|+||||++..+..
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 67999999999999999873
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.69 E-value=4e-05 Score=48.45 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.-.++|+|+.|||||||++.+.+.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEccCCCccccceeeeccc
Confidence 3456889999999999999999743
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.5e-05 Score=50.80 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+|+|+|.+||||||+...|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.2e-05 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.+...|+|.|++|||||||++.+..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999999999974
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.5e-05 Score=50.25 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=20.8
Q ss_pred HHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 5 DSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.+...+........-.++|.|++|+|||+|++++.
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp HHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 344444442233445668899999999999999887
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=50.12 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=22.8
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+....-.+|+++|++|+|||||+.++..
T Consensus 12 l~~~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 12 YNNNGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3333456899999999999999999874
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00011 Score=58.48 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-|+++|+.|+||||++..+..
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 578999999999999998873
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.001 Score=47.02 Aligned_cols=111 Identities=18% Similarity=0.142 Sum_probs=60.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC---------C------------CCCCccceeEEEE--------------eecC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYS---------E------------DMIPTVGFNMRKV--------------TKGN 63 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~---------~------------~~~~t~~~~~~~~--------------~~~~ 63 (184)
.-+++++|++|+||||++..+...-.. . .+....++..... +..+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 368999999999999999887521100 0 0001112111110 1125
Q ss_pred EEEEEEEcCCccchh----HhHHhhc--cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 64 VTIKLWDLGGQRRFR----TMWERYC--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~----~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
+.+.++||||..... ..+...+ ...+-+++|+|++.. ..........+ .. - .+-=+++||.|....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f-~~---~-~~~~~I~TKlDet~~ 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNF-KD---I-HIDGIVFTKFDETAS 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHh-CC---C-CCCEEEEEeecCCCC
Confidence 789999999965322 1122222 234668899998532 22333333333 11 1 223456899997653
|
|
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.1e-05 Score=49.26 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.++|.+|||||||++++..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999983
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.7e-05 Score=45.34 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
-.++++|++|||||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457899999999999999985
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.1e-05 Score=49.38 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
+|.+.|++|+||||++++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i 20 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVI 20 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999987
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00077 Score=47.68 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
--++.|--|+|||||+|.++.+
T Consensus 59 vtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 59 VTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred eEEEEecccCChHHHHHHHHcc
Confidence 3368999999999999999843
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.4e-05 Score=50.02 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..+.-.++++|+.|||||||++.++
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3455678999999999999999886
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00021 Score=52.66 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
-+++++|.+|+|||||++.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 478999999999999999998543
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.6e-05 Score=47.06 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
|+|.|.+||||||+++.|..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999973
|
... |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=39.53 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=47.8
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe-ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC
Q 030000 22 LSLIG-LQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 22 i~v~G-~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
|++.| ..|+||||+...+...-.. . +....-++ ...+.+.++|+|+..... ....+..+|.++++.+.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~-----~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~- 72 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-R-----GKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS- 72 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-C-----CCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-
Confidence 45666 6799999988877521111 0 11111111 111778999999865332 235667799999999875
Q ss_pred CCCHHHHHHHHH
Q 030000 100 RDSVPIARSELH 111 (184)
Q Consensus 100 ~~~~~~~~~~~~ 111 (184)
..++........
T Consensus 73 ~~s~~~~~~~~~ 84 (104)
T cd02042 73 PLDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHHHH
Confidence 335555544433
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00013 Score=50.40 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.+-|++.|++|||||||++.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999999999998874
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=6.3e-05 Score=49.94 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999963
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00015 Score=47.77 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
......|+|.|.+||||||+.+.+..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678889999999999999999974
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=6.2e-05 Score=52.35 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-++++|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999984
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.9e-05 Score=50.41 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
++..-|+|+|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999974
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.55 E-value=8e-05 Score=46.56 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
|++.|++|+|||++++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999999999983
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00012 Score=48.19 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=33.5
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHh
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQL 146 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~ 146 (184)
|++++|+|+.++.+-. ...+...+. ....+.|+++|+||+|+.+.....++.+.+
T Consensus 1 DvVl~VvDar~p~~~~--~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGCR--CPQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCCC--CHHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 7899999997753322 112222211 112468999999999997655554454444
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.54 E-value=8.4e-05 Score=47.09 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030000 22 LSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~ 42 (184)
|+++|++|||||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 679999999999999999853
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=8.2e-05 Score=50.89 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
.+|+|+|++||||||+.+.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999996
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=7.7e-05 Score=49.83 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
.++++|++|||||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999643
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.53 E-value=8.3e-05 Score=49.30 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.++|+|++||||||+++.+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999864
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00012 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+..-.++++|++||||||+++.+++-
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44567999999999999999999843
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=8.5e-05 Score=48.12 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++|+|.|.||+||||++++|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 479999999999999999997
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=51.19 Aligned_cols=38 Identities=26% Similarity=0.539 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhhccc-eeEE-EEEcCCCCCHHHHHHHHhc
Q 030000 4 LDSILNWLRSLFFKQ-EMEL-SLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~i-~v~G~~~~GKstli~~~~~ 41 (184)
++.+.+|+....... .-+| ++.||+||||||.++.+..
T Consensus 28 v~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~ 67 (519)
T PF03215_consen 28 VEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAK 67 (519)
T ss_pred HHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 456788888754332 2344 6799999999999999873
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=48.03 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.=.+.|+|++|+|||||+|-+.+-
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhc
Confidence 346889999999999999998743
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=7.1e-05 Score=50.29 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
.+++||+|||||||++.+-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 4799999999999999885
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00016 Score=52.70 Aligned_cols=38 Identities=26% Similarity=0.467 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhhc--c-ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 4 LDSILNWLRSLFF--K-QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~--~-~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
++.+.++++.... . +.-=++++|++|+|||||.+++..
T Consensus 60 i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 60 IERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455566666533 2 223368999999999999999973
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0043 Score=40.91 Aligned_cols=65 Identities=14% Similarity=-0.092 Sum_probs=42.4
Q ss_pred EEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 65 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 65 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
.+.++|+|+.... .....+..+|.+++++++.. .++......+..+... ......+++|+.|...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc
Confidence 6999999986433 23445678999999998764 3555555544433221 2235678899998654
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00015 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
....+|+++|+|||||+|+...+.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La 52 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIK 52 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHH
Confidence 446889999999999999999997
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00018 Score=51.28 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+.++-|+|.|++||||||+++.+.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456889999999999999998764
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00011 Score=48.83 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+-|+|.|.+|||||||.+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36688999999999999999973
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00012 Score=53.07 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030000 22 LSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~ 42 (184)
++++|++|||||||++.+.+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999843
|
|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=7.4e-05 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
....+|+|.|.||+|||||..++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHH
Confidence 346899999999999999999997
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.50 E-value=9.3e-05 Score=49.92 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
|+|.|++|||||||++.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999964
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=97.50 E-value=9.2e-05 Score=49.40 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
..|+++|++||||||+++.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999997
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00011 Score=46.17 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGY 44 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~ 44 (184)
-.++++|++|+||||++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999985443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00055 Score=42.92 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.--|++.|+.|+|||||++.+...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346889999999999999999854
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=97.49 E-value=8.3e-05 Score=50.68 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.+. .++++|+.|||||||++.+.+-
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 345 7899999999999999999753
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0018 Score=41.99 Aligned_cols=19 Identities=37% Similarity=0.844 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
+.++|..+||||||+.++.
T Consensus 5 l~ivG~k~SGKTTLie~lv 23 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLV 23 (161)
T ss_pred EEEEecCCCChhhHHHHHH
Confidence 5799999999999999997
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00013 Score=46.33 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.|+|+|+.+||||||+..+++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999973
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0016 Score=44.09 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
-+++++|+.|+|||||++.+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 478999999999999999998
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 184 | ||||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-67 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 3e-65 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-64 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 1e-27 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 4e-26 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 1e-25 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 3e-25 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 3e-25 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 3e-25 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 6e-25 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 7e-25 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 1e-24 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 2e-24 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 5e-24 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 1e-23 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 1e-23 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 1e-23 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 2e-23 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 2e-23 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 3e-23 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 3e-23 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 5e-23 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 8e-23 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 8e-23 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 2e-22 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 3e-22 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 4e-22 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 5e-22 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 5e-22 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 1e-21 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 2e-21 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 4e-21 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 5e-21 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 8e-21 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 2e-19 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 2e-19 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 2e-19 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 3e-19 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 3e-19 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 4e-19 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 6e-19 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 8e-19 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 9e-19 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 1e-18 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 2e-18 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 2e-18 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 2e-18 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 3e-18 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 3e-18 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 6e-18 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 6e-17 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 6e-17 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 3e-16 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 8e-14 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 2e-12 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 3e-12 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 4e-12 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 4e-12 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 4e-12 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 5e-12 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 5e-12 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 6e-12 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 6e-12 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 7e-12 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 7e-12 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 2e-11 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 6e-11 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 7e-11 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 1e-10 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 1e-10 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 1e-10 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 2e-10 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 2e-10 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 2e-10 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 2e-10 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 2e-10 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 3e-10 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 3e-10 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 3e-10 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 5e-10 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 6e-10 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 7e-10 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 7e-10 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 7e-10 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 8e-10 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 8e-10 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 1e-09 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 1e-09 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 2e-09 | ||
| 1wms_A | 177 | High Resolution Crystal Structure Of Human Rab9 Gtp | 2e-09 | ||
| 1s8f_A | 177 | Crystal Structure Of Rab9 Complexed To Gdp Reveals | 2e-09 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 2e-09 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 2e-09 | ||
| 3mjh_A | 168 | Crystal Structure Of Human Rab5a In Complex With Th | 3e-09 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 3e-09 | ||
| 1zbd_A | 203 | Structural Basis Of Rab Effector Specificity: Cryst | 4e-09 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 4e-09 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 5e-09 | ||
| 2ocb_A | 180 | Crystal Structure Of Human Rab9b In Complex With A | 5e-09 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 8e-09 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 8e-09 | ||
| 3tso_A | 178 | Structure Of The Cancer Associated Rab25 Protein In | 1e-08 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 1e-08 | ||
| 1z22_A | 168 | Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac | 2e-08 | ||
| 2oil_A | 193 | Crystal Structure Of Human Rab25 In Complex With Gd | 2e-08 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 2e-08 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 2e-08 | ||
| 1t91_A | 207 | Crystal Structure Of Human Small Gtpase Rab7(Gtp) L | 2e-08 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 4e-08 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 6e-08 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 8e-08 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 8e-08 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 8e-08 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 1e-07 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 1e-07 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 1e-07 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 2e-07 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 3e-07 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 3e-07 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 3e-07 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 9e-07 | ||
| 1wa5_A | 176 | Crystal Structure Of The Exportin Cse1p Complexed W | 1e-06 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 1e-06 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 1e-06 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 1e-06 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 1e-06 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 1e-06 | ||
| 2hxs_A | 178 | Crystal Structure Of Rab28a Gtpase In The Inactive | 2e-06 | ||
| 1rrp_A | 204 | Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = | 2e-06 | ||
| 3ea5_A | 216 | Kap95p Binding Induces The Switch Loops Of Rangdp T | 2e-06 | ||
| 1a2k_C | 216 | Gdpran-Ntf2 Complex Length = 216 | 2e-06 | ||
| 3gj0_A | 221 | Crystal Structure Of Human Rangdp Length = 221 | 2e-06 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 2e-06 | ||
| 2y8e_A | 179 | Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo | 2e-06 | ||
| 1qg2_A | 216 | Canine Gdp-Ran R76e Mutant Length = 216 | 2e-06 | ||
| 2nty_C | 180 | Rop4-Gdp-Prone8 Length = 180 | 3e-06 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 3e-06 | ||
| 1qbk_C | 216 | Structure Of The Karyopherin Beta2-ran Gppnhp Nucle | 3e-06 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 3e-06 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 4e-06 | ||
| 2wbl_C | 180 | Three-Dimensional Structure Of A Binary Rop-Prone C | 4e-06 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 4e-06 | ||
| 1qg4_A | 216 | Canine Gdp-Ran F72y Mutant Length = 216 | 5e-06 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 6e-06 | ||
| 1z0k_A | 172 | Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W | 8e-06 | ||
| 2erx_A | 172 | Crystal Structure Of Diras2 In Complex With Gdp And | 9e-06 | ||
| 3gj4_A | 221 | Crystal Structure Of Human Rangdp-Nup153znf3 Comple | 1e-05 | ||
| 3nby_C | 176 | Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea | 1e-05 | ||
| 3nc1_C | 182 | Crystal Structure Of The Crm1-Rangtp Complex Length | 1e-05 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 1e-05 | ||
| 2x19_A | 172 | Crystal Structure Of Importin13 - Rangtp Complex Le | 1e-05 | ||
| 3icq_B | 171 | Karyopherin Nuclear State Length = 171 | 1e-05 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 2e-05 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 2e-05 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 2e-05 | ||
| 3m1i_A | 219 | Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex | 2e-05 | ||
| 3oes_A | 201 | Crystal Structure Of The Small Gtpase Rhebl1 Length | 2e-05 | ||
| 3ran_A | 216 | Canine Gdp-Ran Q69l Mutant Length = 216 | 2e-05 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 2e-05 | ||
| 4djt_A | 218 | Crystal Structure Of A Nuclear Gtp-Binding Protein | 3e-05 | ||
| 3bwd_D | 182 | Crystal Structure Of The Plant Rho Protein Rop5 Len | 3e-05 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 4e-05 | ||
| 4dkx_A | 216 | Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | 4e-05 | ||
| 2ke5_A | 174 | Solution Structure And Dynamics Of The Small Gtpase | 4e-05 | ||
| 2kwi_A | 178 | Ralb-Rlip76 (Ralbp1) Complex Length = 178 | 4e-05 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 5e-05 | ||
| 3cwz_A | 188 | Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | 6e-05 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 1e-04 | ||
| 2hv8_A | 172 | Crystal Structure Of Gtp-Bound Rab11 In Complex Wit | 1e-04 | ||
| 1svk_A | 353 | Structure Of The K180p Mutant Of Gi Alpha Subunit B | 1e-04 | ||
| 3clv_A | 208 | Crystal Structure Of Rab5a From Plasmodium Falcipar | 1e-04 | ||
| 2a5j_A | 191 | Crystal Structure Of Human Rab2b Length = 191 | 1e-04 | ||
| 3bbp_A | 211 | Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = | 1e-04 | ||
| 1shz_A | 340 | Crystal Structure Of The P115rhogef Rgrgs Domain In | 1e-04 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 1e-04 | ||
| 3rwm_B | 185 | Crystal Structure Of Ypt32 In Complex With Gppnhp L | 2e-04 | ||
| 1oiw_A | 191 | X-ray Structure Of The Small G Protein Rab11a In Co | 2e-04 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 2e-04 | ||
| 2d7c_A | 167 | Crystal Structure Of Human Rab11 In Complex With Fi | 2e-04 | ||
| 2gzd_A | 173 | Crystal Structure Of Rab11 In Complex With Rab11-Fi | 2e-04 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 3e-04 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 4e-04 | ||
| 2a78_A | 187 | Crystal Structure Of The C3bot-Rala Complex Reveals | 4e-04 | ||
| 1uad_A | 175 | Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi | 4e-04 | ||
| 2bov_A | 206 | Molecular Recognition Of An Adp-Ribosylating Clostr | 6e-04 | ||
| 2j1l_A | 214 | Crystal Structure Of Human Rho-Related Gtp-Binding | 6e-04 | ||
| 2ery_A | 172 | The Crystal Structure Of The Ras Related Protein Rr | 6e-04 | ||
| 2gf0_A | 199 | The Crystal Structure Of The Human Diras1 Gtpase In | 6e-04 | ||
| 3c7k_A | 333 | Molecular Architecture Of Galphao And The Structura | 7e-04 | ||
| 3ihw_A | 184 | Crystal Structure Of The Ras-Like Domain Of Centg3 | 7e-04 | ||
| 1u8y_A | 168 | Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal | 8e-04 |
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177 | Back alignment and structure |
|
| >pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168 | Back alignment and structure |
|
| >pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178 | Back alignment and structure |
|
| >pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204 | Back alignment and structure |
|
| >pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216 | Back alignment and structure |
|
| >pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216 | Back alignment and structure |
|
| >pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179 | Back alignment and structure |
|
| >pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216 | Back alignment and structure |
|
| >pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172 | Back alignment and structure |
|
| >pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172 | Back alignment and structure |
|
| >pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221 | Back alignment and structure |
|
| >pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176 | Back alignment and structure |
|
| >pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172 | Back alignment and structure |
|
| >pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219 | Back alignment and structure |
|
| >pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201 | Back alignment and structure |
|
| >pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218 | Back alignment and structure |
|
| >pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | Back alignment and structure |
|
| >pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174 | Back alignment and structure |
|
| >pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172 | Back alignment and structure |
|
| >pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353 | Back alignment and structure |
|
| >pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208 | Back alignment and structure |
|
| >pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191 | Back alignment and structure |
|
| >pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211 | Back alignment and structure |
|
| >pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185 | Back alignment and structure |
|
| >pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167 | Back alignment and structure |
|
| >pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187 | Back alignment and structure |
|
| >pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175 | Back alignment and structure |
|
| >pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214 | Back alignment and structure |
|
| >pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172 | Back alignment and structure |
|
| >pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199 | Back alignment and structure |
|
| >pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333 | Back alignment and structure |
|
| >pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184 | Back alignment and structure |
|
| >pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 234 bits (600), Expect = 6e-80
Identities = 108/178 (60%), Positives = 142/178 (79%)
Query: 7 ILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTI 66
+ L K+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+TKGNVTI
Sbjct: 10 HSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTI 69
Query: 67 KLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 126
KLWD+GGQ RFR+MWERYCRGVSAI+Y+VDAAD++ + +++ELH LL KP L GIP+LV
Sbjct: 70 KLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV 129
Query: 127 LGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 184
LGNK D AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 130 LGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 187
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 4e-73
Identities = 62/182 (34%), Positives = 100/182 (54%), Gaps = 2/182 (1%)
Query: 1 MG-FLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV 59
MG +L S+ L L +++ + ++GL NAGKTS++ + G +PTVG N+ +
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETL 61
Query: 60 TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSL 119
N++ ++WDLGGQ R W Y A++YVVD+ DRD + +A+ EL+ LL + L
Sbjct: 62 QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDEL 121
Query: 120 SGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
LL+ NK D +A S+ + +QLG+ SI +R S K + +DWL++
Sbjct: 122 RKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVER 181
Query: 180 SK 181
+
Sbjct: 182 LR 183
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 4e-73
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 1/171 (0%)
Query: 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73
+EM + ++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGG
Sbjct: 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGG 60
Query: 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 133
R W Y A++YVVD+ DRD + I++SEL +L + L L+V NK D
Sbjct: 61 LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 120
Query: 134 SEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 184
+A++ + + LGL ++ DR+ + S +D ++WL++ K+ +
Sbjct: 121 EQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 171
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 2e-68
Identities = 54/189 (28%), Positives = 100/189 (52%), Gaps = 5/189 (2%)
Query: 1 MGFLDSILNWLRSLFF--KQEMELSLIGLQNAGKTSLVNTIATGG-YSEDMIPTVGFNMR 57
MG + L +E+ + +GL N+GKT+++N + S++++PT+GF++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE 60
Query: 58 KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKP 117
K +++ ++D+ GQ R+R +WE Y + AI++V+D++DR + +A+ EL LL P
Sbjct: 61 KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP 120
Query: 118 SLSG--IPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175
+ IP+L NK+D +A++ + L LE+I D+ + +DW
Sbjct: 121 DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDW 180
Query: 176 LIKHSKTAK 184
L +T K
Sbjct: 181 LQDQIQTVK 189
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 4e-68
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 10/186 (5%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
G+ +L L + + +L +GL NAGKT+L++ + + + PT ++
Sbjct: 7 FGWFRDVLASLG--LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELA 63
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
GN+ +DLGG + R +W+ Y V+ I+++VDAAD + AR EL L L
Sbjct: 64 IGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELK 123
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESIT-------DREVCCYMISCKDSINIDAVI 173
+P ++LGNKID A+S+ L LGL + T R V +M S
Sbjct: 124 DVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 183
Query: 174 DWLIKH 179
WL ++
Sbjct: 184 QWLSQY 189
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 2e-65
Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 3/180 (1%)
Query: 7 ILNWLRSLFF--KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNV 64
+L+ LR L QE+ + L+GL NAGKT+L+ +A + PT GFN++ V
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLA-SEDISHITPTQGFNIKSVQSQGF 60
Query: 65 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPL 124
+ +WD+GGQR+ R W Y ++YV+D+ADR EL ELL + LS +P+
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120
Query: 125 LVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 184
L+ NK D A + + L L +I DR S + ++W+ K+ K
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKK 180
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 5e-65
Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 6/182 (3%)
Query: 1 MGFLDSILNWLRSLFF-KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV 59
MG L L+ + ++E+ L ++GL NAGKT+++ G + + PT+GFN++ +
Sbjct: 3 MGLLT----ILKKMKQKERELRLLMLGLDNAGKTTILKKFN-GEDVDTISPTLGFNIKTL 57
Query: 60 TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSL 119
+ +WD+GGQ+ R+ W Y +++VVD+ADR + + EL LL++ L
Sbjct: 58 EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL 117
Query: 120 SGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
+G LL+ NK D ALS A+ + L L+SI S ++ IDWL+
Sbjct: 118 AGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 177
Query: 180 SK 181
Sbjct: 178 IS 179
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 1e-64
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 4/185 (2%)
Query: 1 MGFLDSILNWLRSLFF-KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV 59
MG + + L+ +E+ + ++GL AGKT+++ + G PT+GFN+ +
Sbjct: 1 MGNI--FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQ-IGEVVTTKPTIGFNVETL 57
Query: 60 TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSL 119
+ N+ + +WDLGGQ R W Y +A+++VVD+ D+D + A ELH +L + L
Sbjct: 58 SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEEL 117
Query: 120 SGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
LLV NK D+ ALS + +L L + DR S I +DWLI
Sbjct: 118 QDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV 177
Query: 180 SKTAK 184
K +
Sbjct: 178 IKEEQ 182
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 3e-64
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 1/173 (0%)
Query: 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKL 68
+ +F K++M + ++GL AGKT+++ + G IPT+GFN+ V N+ +
Sbjct: 19 SLFSRIFGKKQMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNICFTV 77
Query: 69 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 128
WD+GGQ + R +W Y + +++VVD+ DR+ V + EL ++L + L LLV
Sbjct: 78 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFA 137
Query: 129 NKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181
NK D A+ L D+LGL+ + R + +DWL
Sbjct: 138 NKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 4e-64
Identities = 52/197 (26%), Positives = 101/197 (51%), Gaps = 19/197 (9%)
Query: 1 MGFL-DSILNWLRSL-----FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF 54
M F+ D I + S+ +K+ +L +GL NAGKT+L++ + + +PT+
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHP 59
Query: 55 NMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELL 114
++T +T +DLGG + R +W+ Y ++ I+++VD AD + + ++ EL L+
Sbjct: 60 TSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLM 119
Query: 115 MKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG------------LESITDREVCCYMIS 162
+++ +P+L+LGNKID+ EA+S++ L + G L+ + R + +M S
Sbjct: 120 TDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCS 179
Query: 163 CKDSINIDAVIDWLIKH 179
W+ ++
Sbjct: 180 VLKRQGYGEGFRWMAQY 196
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 3e-62
Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 4/181 (2%)
Query: 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60
MG L + LF QE ++ ++GL NAGKT+++ + PT+G N+ ++
Sbjct: 1 MGIL---FTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFS-MNEVVHTSPTIGSNVEEIV 56
Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
N +WD+GGQ R+ W Y ++ VVD+ DR+ + + R EL+++L L
Sbjct: 57 INNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR 116
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
LL+ NK D E ++ + L L SI D + + ++W++
Sbjct: 117 KAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
Query: 181 K 181
K
Sbjct: 177 K 177
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 7e-61
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Query: 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 79
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+W Y + +++VVD+ DR+ V AR EL +L + L LLV NK D A++
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 184
+ D+LGL S+ R + +DWL + K
Sbjct: 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 164
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 1e-57
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 3/181 (1%)
Query: 1 MGFLDSILNWLRSLFF--KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK 58
MG + L QE ++ ++GL NAGKT+++ + PT+G N+ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFS-MNEVVHTSPTIGSNVEE 59
Query: 59 VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS 118
+ N +WD+GGQ R+ W Y ++ VVD+ DR+ + + R EL+++L
Sbjct: 60 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 119
Query: 119 LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
L LL+ NK D E ++ + L L SI D + + ++W++
Sbjct: 120 LRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179
Query: 179 H 179
Sbjct: 180 R 180
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 4e-45
Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
Query: 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKL 68
R LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V N++ +
Sbjct: 155 PQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTV 213
Query: 69 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 128
WD+GGQ + R +W Y + +++VVD+ DR+ V AR EL +L + L LLV
Sbjct: 214 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA 273
Query: 129 NKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 184
NK D A++ + D+LGL S+ R + +DWL + K
Sbjct: 274 NKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 329
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 9e-36
Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 10/155 (6%)
Query: 3 FLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG 62
++D L + + + G QN+GKTSL+ + T + + +
Sbjct: 32 WIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQE-PLSAADYD 89
Query: 63 NVTIKLWDLGGQRRFRTMWERY----CRGVSAILYVVDAA-DRDSVPIARSELHELLMKP 117
+ L D G + R Y + V ++++VD+ D + L ++L
Sbjct: 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSIT 149
Query: 118 SLS---GIPLLVLGNKIDKSEALSKQALVDQLGLE 149
S GI +L+ NK + A + D L E
Sbjct: 150 ESSCENGIDILIACNKSELFTARPPSKIKDALESE 184
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-35
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGG 73
+ + +GL ++GKT L + TG Y + ++ + N ++ L DL G
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVNNNRGNSLTLIDLPG 63
Query: 74 QRRFR-TMWERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLS--GIPLLVLGN 129
R + +R+ A+++VVD+A V L+++L+ LL+ N
Sbjct: 64 HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123
Query: 130 KIDKSEALSKQALVDQLGLESITDRE 155
K D + A S + + QL E T R
Sbjct: 124 KQDIAMAKSAKLIQQQLEKELNTLRV 149
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 4e-35
Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 13/149 (8%)
Query: 12 RSLFFKQ---EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKL 68
+ KQ + + + G QN+GKTSL+ + T + + + + L
Sbjct: 2 SHMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-PLSAADYDGSGVTL 59
Query: 69 WDLGGQRRFRTMWERY----CRGVSAILYVVDAA-DRDSVPIARSELHELLMKPSLS--- 120
D G + R Y + V ++++VD+ D + L ++L S
Sbjct: 60 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN 119
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLE 149
GI +L+ NK + A + D L E
Sbjct: 120 GIDILIACNKSELFTARPPSKIKDALESE 148
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-33
Identities = 27/187 (14%), Positives = 63/187 (33%), Gaps = 27/187 (14%)
Query: 15 FFKQEMELSLI--GLQNAGKTSLVNTIATGGYSEDM----------IPTVGFNM-----R 57
F +E+ ++ G +GKT+ + I + T+ F+
Sbjct: 8 FANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67
Query: 58 KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLM-- 115
+V L+ + GQ + + RGV I++V D+A + +
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRA-NAESMRNMRENL 126
Query: 116 ---KPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172
+L +P+++ NK D +AL + + + + + + +
Sbjct: 127 AEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----EGKFPVLEAVATEGKGVFET 182
Query: 173 IDWLIKH 179
+ + +
Sbjct: 183 LKEVSRL 189
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-29
Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 15/171 (8%)
Query: 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVT-KGNVT 65
F + + L+GL+ +GK+S+ + + + T ++ V
Sbjct: 11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVN 70
Query: 66 IKLWDLGGQRRFRTMW---ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI 122
++WD GQ F E RG A++YV+DA D + R + +
Sbjct: 71 FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDM 130
Query: 123 PLLVLGNKID------KSEALS--KQALVDQLGLESITDREVCCYMISCKD 165
V +K+D K E Q D L + + Y+ S D
Sbjct: 131 NFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD 181
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-21
Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 23/171 (13%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L L+G GKT+ V TG + + + T+G + IK WD
Sbjct: 16 FK----LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 71
Query: 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
GQ +F + + Y + + D R + + +L+ IP+++ GNK+
Sbjct: 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKV 129
Query: 132 DKSEALSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 178
D + K + L+ Y IS K + N + WL +
Sbjct: 130 DIKDRKVKAKSIVFHRKKNLQ---------YYDISAKSNYNFEKPFLWLAR 171
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 2e-21
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
K L L+G GK+S+V + ++E+ PT+G F ++VT T+K WD
Sbjct: 4 IK----LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDT 59
Query: 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
GQ RF ++ Y R A L V D S AR + EL + S I + ++GNKI
Sbjct: 60 AGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKI 118
Query: 132 DKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172
D + ++ + + G + ++ + + S K N++ V
Sbjct: 119 DXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 86.6 bits (214), Expect = 5e-21
Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 21/179 (11%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVT-KGNVTIKLWDLGGQRRF-- 77
L+G +GK+S+ + I + + D + T+ + GN+T+ LWD GGQ F
Sbjct: 8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67
Query: 78 ---RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSL--SGIPLLVLGNKID 132
+ + V +++V D + + + L + + VL +K+D
Sbjct: 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLK-DIEIFAKALKQLRKYSPDAKIFVLLHKMD 126
Query: 133 KSEALSKQALVDQL------GLESITDREVCCYMISCKDSINIDA---VIDWLIKHSKT 182
+ ++ L + + + S D A ++ LI +
Sbjct: 127 LVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIPNMSN 185
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 8e-21
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
++G GKTSL+N +S T+G F ++V + + + WD GQ RF++
Sbjct: 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS 72
Query: 80 MWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136
+ + RG + V D ++ + R E P +VLGNKID
Sbjct: 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID---- 128
Query: 137 LSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
L + + + + Y S K++IN++
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA 165
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 5e-20
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
+IG GK+SL+ + ++ T+G F ++ ++ KL WD GQ RFRT
Sbjct: 20 IIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT 79
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALS 138
+ Y RG ++ V D RD+ + L+EL + + I +++GNKIDK +
Sbjct: 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD 139
Query: 139 K---QALVDQLGLESITDREVCCYMISCKDSINIDAV 172
+ + + I E S K +
Sbjct: 140 RNEGLKFARKHSMLFI---EA-----SAKTCDGVQCA 168
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 2e-19
Identities = 38/180 (21%), Positives = 62/180 (34%), Gaps = 37/180 (20%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG---FNMRKVTKGNVTIKL--WD 70
+K + LIG GKT+ +N + G + ++ TVG + + IK WD
Sbjct: 12 YK----ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWD 67
Query: 71 LGGQRRFRTMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVL 127
GQ + + + Y G S + D R + + E + + P++V
Sbjct: 68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAV----VGNEAPIVVC 123
Query: 128 GNKID--------KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 178
NKID K ++ E Y IS K + N L +
Sbjct: 124 ANKIDIKNRQKISKKLV---MEVLKGKNYE---------YFEISAKTAHNFGLPFLHLAR 171
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 2e-19
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 22/160 (13%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVT-KGNVTIKL--WDLGGQRRFR 78
++G +GKTSL A + + T+G F +R++T GN+ + L WD+GGQ
Sbjct: 11 VLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG 70
Query: 79 TMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
M ++Y G +L V D + S + + + ++ + + LV GNKID
Sbjct: 71 KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV-GNKIDLEH 129
Query: 136 --ALSK---QALVDQLGLESITDREVCCYMISCKDSINID 170
+ + G S V S K ++
Sbjct: 130 MRTIKPEKHLRFCQENGFSSH---FV-----SAKTGDSVF 161
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 4e-19
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
+IG + GKTS + A ++ + TVG F ++ V + +KL WD GQ R+RT
Sbjct: 28 IIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRT 87
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 137
+ Y RG + + D + +S + ++ ++++GNK D E +
Sbjct: 88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW-DNAQVILVGNKCDMEEERVV 146
Query: 138 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
Q L +QLG + E S K++I++ + L+
Sbjct: 147 PTEKGQLLAEQLGFDFF---EA-----SAKENISVRQAFERLVD 182
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 6e-19
Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 17/163 (10%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
LIG GK+ L+ ++ I T+G F ++ V +KL WD GQ RFRT
Sbjct: 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 67
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALS 138
+ Y RG I+ V D D + + + + LL++GNK D ++
Sbjct: 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVT 126
Query: 139 K---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+AL +LG+ I E S K+ N++ + L K
Sbjct: 127 ADQGEALAKELGIPFI---ES-----SAKNDDNVNEIFFTLAK 161
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 6e-19
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVT-KGNVTIKL--WDLGGQRRFR 78
++G GKTSL++ YS+ T+G F ++VT G+ + WD GQ RF+
Sbjct: 13 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ 72
Query: 79 TMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
++ + RG + V D + S + R E S P ++LGNKID E
Sbjct: 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132
Query: 136 ---ALSK---QALVDQLGLESITDREVCCYMISCKDSINID 170
+S+ Q L LG ++ ++ S K++IN+D
Sbjct: 133 SKKIVSEKSAQELAKSLG-------DIPLFLTSAKNAINVD 166
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 7e-19
Identities = 42/159 (26%), Positives = 62/159 (38%), Gaps = 20/159 (12%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
L+G GK+SL+N T + + T+G F + + + + WD GQ RFR+
Sbjct: 12 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 71
Query: 80 MWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSE- 135
+ + RG L D S + + E P ++LGNKID SE
Sbjct: 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER 131
Query: 136 ALSK---QALVDQLGLESITDREVCCYM-ISCKDSINID 170
+S QA G Y S KD+ N+
Sbjct: 132 QVSTEEAQAWCRDNGD--------YPYFETSAKDATNVA 162
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 8e-19
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 22/164 (13%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK + LIG GK++L++ ++ + T+G F R + TIK WD
Sbjct: 6 FK----VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
GQ R+R + Y RG L V D A + L EL S I ++++GNK
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKS 120
Query: 132 DKSE--ALSK---QALVDQLGLESITDREVCCYMISCKDSINID 170
D A+ +A ++ L I E S DS N++
Sbjct: 121 DLRHLRAVPTDEARAFAEKNNLSFI---ET-----SALDSTNVE 156
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 9e-19
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK + LIG GK++L++ ++ + T+G F R + TIK WD
Sbjct: 30 FK----VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
G R+R + Y RG L V D A + L EL S I ++++GNK
Sbjct: 86 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKS 144
Query: 132 DKSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 170
D L V + ++ ++ S DS N++
Sbjct: 145 D----LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE 180
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-18
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
LIG GKT ++ + ++ I T+G F +R + IKL WD GQ RFRT
Sbjct: 13 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 72
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y RG I+ V D + S R+ + + S + + ++LGNK D ++
Sbjct: 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCD----VND 127
Query: 140 QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+ V + E + +M S K +IN++
Sbjct: 128 KRQVSKERGEKLALDYGIKFMETSAKANINVENA 161
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-18
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 18/164 (10%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
LIG + GKTS + A ++ + TVG F ++ V + + IKL WD GQ R+RT
Sbjct: 27 LIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT 86
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 137
+ Y RG L + D A+++S + ++ ++++GNK D + +
Sbjct: 87 ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW-DNAQVILVGNKCDLEDERVV 145
Query: 138 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ L D LG E E S K++IN+ V + L+
Sbjct: 146 PAEDGRRLADDLGFEFF---EA-----SAKENINVKQVFERLVD 181
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 2e-18
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 22/164 (13%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK + LIG GKT+L++ +S D T+G F+ R V G +K WD
Sbjct: 26 FK----VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 81
Query: 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
G R+R + Y RG L V D + + L EL + I ++++GNK
Sbjct: 82 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLVGNKS 140
Query: 132 DKSE--ALSK---QALVDQLGLESITDREVCCYMISCKDSINID 170
D S+ + + + GL + E S DS N++
Sbjct: 141 DLSQAREVPTEEARMFAENNGLLFL---ET-----SALDSTNVE 176
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 77.1 bits (191), Expect = 2e-18
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 11/154 (7%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
++G GK+S++ G +++D T+G F R++ + ++L WD GQ F
Sbjct: 10 VVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA 69
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ + Y RG A + V DR+S S +++ + IP ++ NKID L
Sbjct: 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKID----LLD 123
Query: 140 QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+ + E + R + S K+ +N+ V
Sbjct: 124 DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEV 157
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-18
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 10/154 (6%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
LIG GK++L++ ++ D T+G F R + IK WD GQ R+R
Sbjct: 18 LIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA 77
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y RG L V D + S L E L + + + + ++GNK D L+
Sbjct: 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSE-LRENADDNVAVGLIGNKSD----LAH 132
Query: 140 QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
V ++ + S +S N+D
Sbjct: 133 LRAVPTEESKTFAQENQLLFTETSALNSENVDKA 166
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 3e-18
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 22/166 (13%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L +G Q+ GKTSL+ + T+G F + + + T++L WD
Sbjct: 17 FK----LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 72
Query: 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
G RFR++ Y R + + V D + +S + ++ + S + ++++GNK
Sbjct: 73 AGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKT 131
Query: 132 DKSE--ALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAV 172
D ++ +S + +L + I E S K N+ +
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFI---ET-----SAKAGYNVKQL 169
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 3e-18
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 18/158 (11%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
LIG GKT LV G + T+G F ++ V +KL WD GQ RFR+
Sbjct: 31 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS 90
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 137
+ + Y R +A++ D +S L E+ S + + +++GNKID +E +
Sbjct: 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDLAERREV 149
Query: 138 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAV 172
S+ + + + + E S K+S N++ +
Sbjct: 150 SQQRAEEFSEAQDMYYL---ET-----SAKESDNVEKL 179
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 3e-18
Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 17/163 (10%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
LIG GK+ L+ ++ I T+G F ++ V +KL WD GQ RFRT
Sbjct: 25 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT 84
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALS 138
+ Y RG I+ V D D + + + + LL++GNK D ++
Sbjct: 85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVT 143
Query: 139 K---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+AL +LG+ I E S K+ N++ + L K
Sbjct: 144 ADQGEALAKELGIPFI---ES-----SAKNDDNVNEIFFTLAK 178
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 4e-18
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
+IG + GKTS + A ++ + TVG F ++ + + + IKL WD G R+RT
Sbjct: 13 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT 72
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 137
+ Y RG + + D + +S + ++ +L++GNK D + +
Sbjct: 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW-DNAQVLLVGNKCDMEDERVV 131
Query: 138 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
S + L D LG E E S KD+IN+ + L+
Sbjct: 132 SSERGRQLADHLGFEFF---EA-----SAKDNINVKQTFERLVD 167
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 4e-18
Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ RFRT
Sbjct: 38 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 97
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 137
+ Y RG I+ V D D++S + L E+ S + L++GNK D + +
Sbjct: 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVV 156
Query: 138 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ D LG+ + E S K++ N++ +
Sbjct: 157 DYTTAKEFADSLGIPFL---ET-----SAKNATNVEQSFMTMAA 192
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 4e-18
Identities = 33/172 (19%), Positives = 70/172 (40%), Gaps = 23/172 (13%)
Query: 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVG--FNMRKVT---KGNVTIKL--W 69
M+L ++G +GKT+L+ + S+ TVG + K + L W
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 70 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDS-VPIARSELHELLMKPSLSGIPLLVLG 128
D G+ F + + + L V D + + V + L + K S P++++G
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNI--KARASSSPVILVG 119
Query: 129 NKIDKSE--------ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172
+D S+ + + L+++ G +I D ++ + ++S + +
Sbjct: 120 THLDVSDEKQRKACMSKITKELLNKRGFPAIRD---YHFVNATEESDALAKL 168
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 5e-18
Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK + L+G GKTSLV +++ I T+G F +K+ G + L WD
Sbjct: 7 FK----VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62
Query: 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
GQ RF + Y R + + V D D DS ++ + EL + I L ++GNKI
Sbjct: 63 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKI 121
Query: 132 DKSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
D L K+ V ES + + S K + I+ +
Sbjct: 122 D----LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEEL 159
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 6e-18
Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ RFRT
Sbjct: 21 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 80
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 137
+ Y RG I+ V D D++S + L E+ S + L++GNK D + +
Sbjct: 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVV 139
Query: 138 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAV 172
+ D LG+ + E S K++ N++
Sbjct: 140 DYTTAKEFADSLGIPFL---ET-----SAKNATNVEQS 169
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 8e-18
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 22/166 (13%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L +G Q+ GKTSL+ + T+G F + + + T++L WD
Sbjct: 15 FK----LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 70
Query: 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
GQ RFR++ Y R + + V D + +S + ++ + S + ++++GNK
Sbjct: 71 AGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKT 129
Query: 132 DKSE--ALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAV 172
D S+ +S + +L + I E S K N+ +
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFI---ET-----SAKAGYNVKQL 167
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 8e-18
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 10/152 (6%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
+IG GK+ L++ + D T+G F R + IKL WD GQ RFR
Sbjct: 20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 79
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y RG + L V D R + S L + + ++++GNK D L
Sbjct: 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-ARNLTNPNTVIILIGNKAD----LEA 134
Query: 140 QALVDQLGLESITDREVCCYM-ISCKDSINID 170
Q V + + ++ S K N++
Sbjct: 135 QRDVTYEEAKQFAEENGLLFLEASAKTGENVE 166
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 9e-18
Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 24/162 (14%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
L G GK+S + + + E++ T+G F M+ + L WD GQ RFR+
Sbjct: 33 LAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRS 92
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ + Y R +L + D S R + + +P++++GNK D + +
Sbjct: 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH-ETVPIMLVGNKADIRDTAAT 151
Query: 140 -----------QALVDQLGLESITDREVCCYMISCKDSINID 170
+ L G E S KD NI
Sbjct: 152 EGQKCVPGHFGEKLAMTYGALFC---ET-----SAKDGSNIV 185
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 9e-18
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
+IG GK+SL+ A +S I T+G F +R V +KL WD GQ RFRT
Sbjct: 14 IIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT 73
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 137
+ Y RG ++ V D +S + LHE+ + + +++GNK D E +
Sbjct: 74 ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDPERKVV 131
Query: 138 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAV 172
Q+G++ E S K+++N++ +
Sbjct: 132 ETEDAYKFAGQMGIQLF---ET-----SAKENVNVEEM 161
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 1e-17
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 28/169 (16%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
K + L+G GK+S+V + ++ PT+G F + V GN K WD
Sbjct: 24 LK----VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDT 79
Query: 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
GQ RF ++ Y RG +A + V D +DS + + EL I + + GNK
Sbjct: 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP-ENIVMAIAGNKC 138
Query: 132 D--------KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172
D +A + + +G + E S K++INI+ +
Sbjct: 139 DLSDIREVPLKDA---KEYAESIGAIVV---ET-----SAKNAINIEEL 176
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 1e-17
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L L+G GK+SLV G + E T+G F + V + T+K WD
Sbjct: 7 FK----LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 62
Query: 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
GQ R+ ++ Y RG A + V D + +S A++ + EL + S I + + GNK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKA 121
Query: 132 DKSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 170
D L+ + VD +S D +M S K S+N++
Sbjct: 122 D----LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVN 157
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-17
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 23/167 (13%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L L+G + GKT +V TG +SE T+G F M+ + +KL WD
Sbjct: 30 FK----LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
GQ RFRT+ + Y R + + D R S + ++ S I L++GNK
Sbjct: 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG-SNIVQLLIGNKS 144
Query: 132 DKSE--ALSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
D SE +S Q+L + + + S KDS N++
Sbjct: 145 DLSELREVSLAEAQSLAEHYDILC--------AIETSAKDSSNVEEA 183
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 2e-17
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 22/166 (13%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
K + L+G GK+S++ + ++ PT+G F + V N K WD
Sbjct: 7 LK----VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 62
Query: 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
G RFR + Y RG +A + V D ++ ++ + EL I + + GNK
Sbjct: 63 AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKC 121
Query: 132 DKSE--ALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAV 172
D ++ + + + D + + E S K++INI+ +
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFV---ET-----SAKNAININEL 159
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 3e-17
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
LIG GK+ L+ + Y+ D I T+G F ++ V T+KL WD GQ RFRT
Sbjct: 13 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT 72
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 137
+ Y RG I+ V D D++S + L E+ + S + L++GNK D + +
Sbjct: 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGNKCDLKDKRVV 131
Query: 138 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ D + + E S DS N++ + +
Sbjct: 132 EYDVAKEFADANKMPFL---ET-----SALDSTNVEDAFLTMAR 167
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 6e-17
Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 22/162 (13%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 78
+ + G GK+SLV G + + IPT+ R+V L D G +F
Sbjct: 11 VVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP 70
Query: 79 TMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
M A + V + S + + + +K S+ IP++++GNK D+++
Sbjct: 71 AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQ--IKGSVEDIPVMLVGNKCDETQ 128
Query: 136 -ALSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+ QA+ + C +M S K + N+ +
Sbjct: 129 REVDTREAQAVAQEWK---------CAFMETSAKMNYNVKEL 161
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 8e-17
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 10/154 (6%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
+IG GK+ L++ + +D T+G F + + G +KL WD GQ RFR+
Sbjct: 15 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 74
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y RG + L V D R++ + L + M S I +++ GNK D L
Sbjct: 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKD----LDA 129
Query: 140 QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
V L ++ S N++
Sbjct: 130 DREVTFLEASRFAQENELMFLETSALTGENVEEA 163
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 8e-17
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 16/157 (10%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
+IG GK+ L++ + +D T+G F R V G T+KL WD GQ RFR+
Sbjct: 30 VIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS 89
Query: 80 MWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136
+ Y RG + L V D R++ + ++ L + I +++ GNK D
Sbjct: 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTL----ASPNIVVILCGNKKD---- 141
Query: 137 LSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
L + V L ++ S N++
Sbjct: 142 LDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 178
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 9e-17
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFR- 78
+IG N GKT L G + + T+G F R V IK+ WD GQ RFR
Sbjct: 25 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK 84
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
+M + Y R V A+++V D + S + + E + IP +++GNK D
Sbjct: 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 1e-16
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 14/164 (8%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL- 68
+S+ K L L+G AGK+SLV + E T+G F + + + T+K
Sbjct: 9 KSINAK----LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFE 64
Query: 69 -WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVL 127
WD GQ R+ ++ Y RG +A + V D ++ S A+ + EL + + + + +
Sbjct: 65 IWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN-PNMVMALA 123
Query: 128 GNKIDKSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 170
GNK D L V ++ +M S K + N+
Sbjct: 124 GNKSD----LLDARKVTAEDAQTYAQENGLFFMETSAKTATNVK 163
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 2e-16
Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 19/158 (12%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80
L+G++ GK+S+ + D + T ++ + + + +L GQ +
Sbjct: 4 LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEP 62
Query: 81 W---ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSE 135
ER + V A++YV+D+ D I L ++ I + VL +K+D
Sbjct: 63 SYDSERLFKSVGALVYVIDSQDEYINAITN--LAMIIEYAYKVNPSINIEVLIHKVDGLS 120
Query: 136 ALSK--------QALVDQLGLESITDREVCCYMISCKD 165
K Q ++L + +V Y+ S D
Sbjct: 121 EDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD 158
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 2e-16
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 9/154 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
+IG + GKTSL+ + E TVG F ++ V I+L WD GQ RF +
Sbjct: 31 IIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS 90
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y R I+ V D +++ + + S LL++GNK+D +
Sbjct: 91 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS-EDAELLLVGNKLDCE---TD 146
Query: 140 QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+ + Q G + + S KD+ N+D +
Sbjct: 147 REITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 2e-16
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 16/157 (10%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 79
+IG GK+ L+ + T+G F R V IKL WD GQ FR+
Sbjct: 26 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 85
Query: 80 MWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136
+ Y RG + L V D R++ + + + S S + ++++GNK D
Sbjct: 86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SSSNMVIMLIGNKSD---- 137
Query: 137 LSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
L + V + E+ +M S K + N++
Sbjct: 138 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA 174
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 4e-16
Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 23/163 (14%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 78
+++ G GK+SLV G + E IPTV R+V L D G +F
Sbjct: 6 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP 65
Query: 79 TMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
M A + V R S + ++ E +K + IP++++GNK D+S
Sbjct: 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE--IKGDVESIPIMLVGNKCDESP 123
Query: 136 --ALSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+ +AL C +M S K + N+ +
Sbjct: 124 SREVQSSEAEALARTWK---------CAFMETSAKLNHNVKEL 157
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 5e-16
Identities = 35/197 (17%), Positives = 70/197 (35%), Gaps = 30/197 (15%)
Query: 4 LDSILNWLRSLFFK----------QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG 53
+++ + +S+ QE+++ LIG AGKTSL+ + + T G
Sbjct: 16 KEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHG 75
Query: 54 FNMRKVT------------KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD 101
N+ WD GGQ + + S + ++D+
Sbjct: 76 LNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDS 135
Query: 102 SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMI 161
+ + + P++V+ NKID++ + + E E + I
Sbjct: 136 NKHYWLRHIEKY-----GGKSPVIVVMNKIDENP---SYNIEQKKINERFPAIENRFHRI 187
Query: 162 SCKDSINIDAVIDWLIK 178
SCK+ ++++ L
Sbjct: 188 SCKNGDGVESIAKSLKS 204
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-15
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSED-MIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFR 78
L+G GKT L+ G + I TVG F + + V +KL WD GQ RFR
Sbjct: 15 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR 74
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--A 136
++ Y R A+L + D ++ S ++ L E+ + L++LGNK+D +
Sbjct: 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERV 133
Query: 137 LSK---QALVDQLGLESITDREVCCYMISCKDSINID 170
+ + + L + GL + E S K +N+D
Sbjct: 134 VKREDGEKLAKEYGLPFM---ET-----SAKTGLNVD 162
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-15
Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 27/174 (15%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVT----------KGNVTIKL--W 69
+G GKT+ + ++ I TVG F ++V + L W
Sbjct: 30 ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLW 89
Query: 70 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129
D GQ RFR++ + R L + D + S R+ + +L ++++GN
Sbjct: 90 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 149
Query: 130 KIDKSE--ALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
K D + +++ + L D+ G+ E S N++ ++ L+
Sbjct: 150 KADLPDQREVNERQARELADKYGIPYF---ET-----SAATGQNVEKAVETLLD 195
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 5e-15
Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 17/159 (10%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 78
L ++G GK++L + + ++ PT+ + RK T L D GQ +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-AL 137
M ++Y R L V + S ++ +P++++GNK D + +
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTV 125
Query: 138 SK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
Q L G Y+ S K ++
Sbjct: 126 ESRQAQDLARSYG---------IPYIETSAKTRQGVEDA 155
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 8e-15
Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 17/159 (10%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGGQRRFR 78
L ++G GK++L + + ++ PT+ + RK V T L D GQ +
Sbjct: 24 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 83
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-AL 137
M ++Y R L V + S ++ +P++++GNK D +
Sbjct: 84 AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTV 143
Query: 138 SK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
L G ++ S K ++
Sbjct: 144 DTKQAHELAKSYG---------IPFIETSAKTRQGVEDA 173
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 9e-15
Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 27/174 (15%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVT----------KGNVTIKL--W 69
+G GKTS++ G ++ I TVG F ++V I L W
Sbjct: 16 ALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLW 75
Query: 70 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129
D G RFR++ + R L + D + S R+ + +L M +++ GN
Sbjct: 76 DTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGN 135
Query: 130 KIDKSE--ALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
K D + A+ + + L ++ G+ E S + NI I+ L+
Sbjct: 136 KSDLEDQRAVKEEEARELAEKYGIPYF---ET-----SAANGTNISHAIEMLLD 181
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 9e-15
Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 20/162 (12%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRF 77
+ L+G GK++L T P R++ + L +D+ Q
Sbjct: 26 VMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA 85
Query: 78 R-TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE- 135
+ + + A L V DR S L L +P++++GNK D +
Sbjct: 86 GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145
Query: 136 -ALSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+S + L L C ++ S N +
Sbjct: 146 REVSLEEGRHLAGTLS---------CKHIETSAALHHNTREL 178
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 1e-14
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 69 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLM---KPSLSGIPLL 125
G + ++ C V +YV +A H + M SG PLL
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166
Query: 126 VLG-NKIDKSEALSKQALVDQLGLESITDREVCCYMISC--KDSINIDAVIDWLIKHSKT 182
VL + + L +L L + + + + I+W+++ ++
Sbjct: 167 VLSCISQGDVKRMPCFYLAHELHLNLL-NHP--WLVQDTEAETLTGFLNGIEWILEEVES 223
Query: 183 AK 184
+
Sbjct: 224 KR 225
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 1e-14
Identities = 34/160 (21%), Positives = 55/160 (34%), Gaps = 18/160 (11%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKGNVTIKL--WDLGGQRRFR 78
L ++G GK++L + D PT+ + + + +L D GQ F
Sbjct: 12 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG 71
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--A 136
M E+Y R L V DR S ++L P++++GNK D
Sbjct: 72 AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ 131
Query: 137 LSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+ + A Y S K +N+D
Sbjct: 132 VPRSEASAFGASHH---------VAYFEASAKLRLNVDEA 162
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 66.7 bits (164), Expect = 2e-14
Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 18/160 (11%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKGNVTIKL--WDLGGQRRFR 78
+ ++G GK++L TG + E PT+ F +++ + L D G +F
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--A 136
+M + Y + + V ++ S + +++ +P++++GNK+D
Sbjct: 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE 125
Query: 137 LSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+S +AL ++ G C +M S K +D +
Sbjct: 126 VSSSEGRALAEEWG---------CPFMETSAKSKTMVDEL 156
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-14
Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 23/165 (13%)
Query: 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKL--WDLGGQR 75
E+++ ++G ++GK++LV+ TG Y ++ P G +++ + L D GG
Sbjct: 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPP 78
Query: 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
++ V A+++V D S + L + S +P++++G + S
Sbjct: 79 EL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 136 ALSK-------QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
A + + L L C Y +N++ V
Sbjct: 134 ANPRVIDDSRARKLSTDLK--------RCTYYETCATYGLNVERV 170
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 2e-14
Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 26/165 (15%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRF 77
+ L+G GK++L T R++ + L +D+ Q
Sbjct: 5 VMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDA 64
Query: 78 R-TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID---- 132
+ + + A L V DR S L L +P++++GNK D
Sbjct: 65 GGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 124
Query: 133 ----KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
E + L L C ++ S N +
Sbjct: 125 REVSLEEG---RHLAGTLS---------CKHIETSAALHHNTREL 157
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 5e-14
Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 17/159 (10%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 78
L ++G GK++L + + ++ PT+ + RK T L D GQ +
Sbjct: 7 LVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 66
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-AL 137
M ++Y R L V + S ++ +P++++GNK D +
Sbjct: 67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTV 126
Query: 138 SK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
Q L G ++ S K +D
Sbjct: 127 DTKQAQDLARSYG---------IPFIETSAKTRQGVDDA 156
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 5e-14
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 18/160 (11%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGGQRRFR 78
+ ++G + GKTSL + G +SE PTV K VT G L D GQ +
Sbjct: 27 VVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS 86
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--A 136
+ + GV + V S + S +L + +P++++GNK D S
Sbjct: 87 ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPERE 146
Query: 137 LSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+ + L + G +M S +++ +
Sbjct: 147 VQAVEGKKLAESWG---------ATFMESSARENQLTQGI 177
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 6e-14
Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 18/160 (11%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 78
++++G ++ GK+SL G + + PT+ K+ L D GQ +
Sbjct: 9 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS 68
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--A 136
+ Y ++ + V S + + +LL IP++++GNK D
Sbjct: 69 IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV 128
Query: 137 LSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+S +AL + ++ S K++ V
Sbjct: 129 ISYEEGKALAESWN---------AAFLESSAKENQTAVDV 159
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 8e-14
Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 10/119 (8%)
Query: 24 LIGLQNAGKTSLVN--TIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL----WDLGGQR 75
++G GK++L++ T + +D T G + VT + T+ + D G
Sbjct: 25 VVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84
Query: 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHEL--LMKPSLSGIPLLVLGNKID 132
++ +Y GV + V D + +S ++ L + +++ NK D
Sbjct: 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTD 143
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-13
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 24/163 (14%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 78
+ ++G GK++L + ED PT + RK +++ D GQ +
Sbjct: 21 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 80
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID------ 132
+ + Y R L V + +S ++L +P L++GNK D
Sbjct: 81 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 140
Query: 133 --KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
EA + +Q Y+ S K N+D V
Sbjct: 141 VSVEEA---KNRAEQWN---------VNYVETSAKTRANVDKV 171
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 1e-13
Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 24/163 (14%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 78
+ ++G GK++L + ED PT + RK +++ D GQ +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 66
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID------ 132
+ + Y R L V + +S ++L +P L++GNK D
Sbjct: 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 126
Query: 133 --KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
EA + DQ Y+ S K N+D V
Sbjct: 127 VSVEEA---KNRADQWN---------VNYVETSAKTRANVDKV 157
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 3e-13
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 24/163 (14%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 78
+ ++G GK++L + ED PT + RK +++ D GQ +
Sbjct: 17 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 76
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID------ 132
+ + Y R L V + +S ++L +P L++GNK D
Sbjct: 77 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 136
Query: 133 --KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
EA + +Q Y+ S K N+D V
Sbjct: 137 VSVEEA---KNRAEQWN---------VNYVETSAKTRANVDKV 167
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 8e-13
Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 19/160 (11%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 78
+ L+G GK++L I G G + L +D+ Q R
Sbjct: 5 VLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--A 136
+ A + V D+ S A +L +P++++GNK D
Sbjct: 64 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 123
Query: 137 LSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+S +A C ++ S N+ A+
Sbjct: 124 VSVDEGRACAVVFD---------CKFIETSAALHHNVQAL 154
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 9e-13
Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 25/164 (15%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKGNVTIKL--WDLGGQRRFR 78
L ++G GK++L + +D PT+ ++ N L D GQ F
Sbjct: 21 LVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 80
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID------ 132
M E+Y R L V D+ S +L P++++ NK+D
Sbjct: 81 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 140
Query: 133 --KSEALSKQALVDQLGLESITDREVCCYM-ISCKDS-INIDAV 172
+ + + + + Y+ S KD +N+D
Sbjct: 141 VTRDQG---KEMATKYN---------IPYIETSAKDPPLNVDKT 172
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 5e-12
Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 17/160 (10%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGGQRRFR 78
L ++G GK++L G + E PT+ + RK V L D G +F
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--A 136
M + Y + V + + + ++L +P++++GNK D +
Sbjct: 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV 125
Query: 137 LSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+ K Q L Q C ++ S K IN++ +
Sbjct: 126 VGKEQGQNLARQWCN--------CAFLESSAKSKINVNEI 157
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 9e-12
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 70 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLM---KPSLSGIPLLV 126
G + ++ C V +YV +A H + M SG PLLV
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 127 LG-NKIDKSEALSKQALVDQLGLESIT 152
L + + L +L L +
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLLN 279
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-11
Identities = 43/178 (24%), Positives = 68/178 (38%), Gaps = 30/178 (16%)
Query: 12 RSLFFKQEME--LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL 68
+L+F+ +E L+++G + AGK++L T + + P + + + L
Sbjct: 12 ENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHL 71
Query: 69 --WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS--ELHELLMKPSLSGIPL 124
D R ERY A L V R S + S EL L K + IP
Sbjct: 72 RVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPA 130
Query: 125 LVLGNKID--------KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSI-NIDAV 172
L+LGNK+D K+E AL + G C + +S ++ V
Sbjct: 131 LLLGNKLDMAQYRQVTKAEG---VALAGRFG---------CLFFEVSACLDFEHVQHV 176
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-11
Identities = 33/165 (20%), Positives = 52/165 (31%), Gaps = 26/165 (15%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPT-VGFNMRKVTKGNVTIKL--WDLGGQRRFR 78
+ L+G GKTSL + A + R +T L D +
Sbjct: 7 VVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD 66
Query: 79 --TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID---- 132
E +G SA + V ADR S A +L +P++++GNK D
Sbjct: 67 KSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARC 126
Query: 133 ----KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
E +A C ++ S N+ +
Sbjct: 127 REVSVEEG---RACAVVFD---------CKFIETSATLQHNVAEL 159
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 9e-11
Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 26/167 (15%)
Query: 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQR 75
E++L++ G GK++LV T + + PT+ R + + + D GQ
Sbjct: 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 87
Query: 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID--- 132
E + R + V D DR S + L + L+++GNK D
Sbjct: 88 DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146
Query: 133 -----KSEALSKQALVDQLGLESITDREVCCYM-ISCKDS-INIDAV 172
E + L +L C + S NI +
Sbjct: 147 SRQVSTEEG---EKLATELA---------CAFYECSACTGEGNITEI 181
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-10
Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQRRFRTM 80
++G GKT+L++ A + E+ +PTV N ++ + + LWD G + +
Sbjct: 12 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 71
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKID 132
A+L D + +++ + E+ + +L++G K D
Sbjct: 72 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI--QEFCPNTKMLLVGCKSD 122
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-10
Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 50/191 (26%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK-------------- 67
L+G + GK+S+V + + E+ T+G F V ++ IK
Sbjct: 12 LLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSI 71
Query: 68 -------------------------LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS 102
+WD GQ R+ ++ Y RG + + V D ++ ++
Sbjct: 72 NDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT 131
Query: 103 VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM-I 161
+ A++ +++L + ++++ NKID +K VD L ++ ++
Sbjct: 132 LDRAKTWVNQLKISS---NYIIILVANKID----KNKFQ-VDILEVQKYAQDNNLLFIQT 183
Query: 162 SCKDSINIDAV 172
S K NI +
Sbjct: 184 SAKTGTNIKNI 194
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-10
Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%)
Query: 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGG 73
E+ L ++G +GK+SL++ TG Y + + T +K + T + + G
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63
Query: 74 QRRFRTMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSG-IPLLVLGN 129
+ + A+++V D +S V +L L + + L+ +
Sbjct: 64 APDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118
Query: 130 KIDKSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
+I S + + D D + C Y +N+D V
Sbjct: 119 RISASS---PRVVGDARARALXADMKRCSYYETXATYGLNVDRV 159
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-09
Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 22/175 (12%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLG 72
K+ +++ ++G GKT L+ + G +PTV N + LWD
Sbjct: 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 79
Query: 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKI 131
GQ + + +L +R S ++ E+ K + +++G K+
Sbjct: 80 GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI--KHYIDTAKTVLVGLKV 137
Query: 132 D----KSEALSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 178
D S+ ++K L +LG Y+ S I ++ V + +
Sbjct: 138 DLRKDGSDDVTKQEGDDLCQKLGC--------VAYIEASSVAKIGLNEVFEKSVD 184
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 5e-09
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQRRFRTM 80
L+G GKT+++ +A Y E +PTV N + + V + LWD G + +
Sbjct: 32 LVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNV 91
Query: 81 WERYCRGVSAILYVVDAADRDSVP-IARSELHELLMKPSLSGIPLLVLGNKID 132
A+L D + ++V + E+ +L++G K D
Sbjct: 92 RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI--LDYCPSTRVLLIGCKTD 142
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 8e-09
Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 26/183 (14%)
Query: 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGG 73
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD G
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87
Query: 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMK--PSLS----GIPLLVL 127
Q + + L S + K P + P++++
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVSPAS-------FENVRAKWYPEVRHHCPNTPIILV 140
Query: 128 GNKIDKSEALSKQALVDQLGLESITDREV---------CCYM-ISCKDSINIDAVIDWLI 177
G K+D + + + L IT + Y+ S + V D I
Sbjct: 141 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
Query: 178 KHS 180
+
Sbjct: 201 RAV 203
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-08
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 18/175 (10%)
Query: 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQ 74
+ ++ +G GKT L+ + + + D +PTV N V V + LWD GQ
Sbjct: 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ 66
Query: 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKIDK 133
+ + RG + + S + + EL K G+P++++G K+D
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL--KHYAPGVPIVLVGTKLDL 124
Query: 134 SEALSKQALVDQLGLESITDRE---------VCCYM-ISCKDSINIDAVIDWLIK 178
+ KQ +D G IT + Y+ S K N+ V D I+
Sbjct: 125 RD--DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 1e-08
Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 26/174 (14%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQRRFRTM 80
++G GKT L+ + A + E+ +PTV + V + L+D GQ + +
Sbjct: 23 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 82
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMK--PSLS----GIPLLVLGNKIDKS 134
L + S + + P L +P L++G +ID
Sbjct: 83 RPLSYPMTDVFLICFSVVNPAS-------FQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135
Query: 135 EALSKQALVDQLGLESITDRE----------VCCYMISCKDSINIDAVIDWLIK 178
+ A ++ + + I + C S + V D I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 189
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 2e-08
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQRRFRTM 80
++G GKT L+ + + E +PTV N +V V + LWD GQ + +
Sbjct: 30 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRL 89
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKID 132
IL DS+ + E+ K +P++++GNK D
Sbjct: 90 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPNVPIILVGNKKD 140
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 3e-08
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGG 73
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD G
Sbjct: 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 62
Query: 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKID 132
Q + + L S R++ E+ + P++++G K+D
Sbjct: 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV--RHHCPNTPIILVGTKLD 120
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 6e-08
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQ 74
+ +++ L+G GKTSL+ A G + E PTV +V V + +WD GQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKID 132
+ + + S +L D +S + E+ +P++V+G K D
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV--NHFCKKVPIIVVGCKTD 149
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 8e-08
Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQRRFRTM 80
++G GKT+L++ A + E+ +PTV N ++ + + LWD G + +
Sbjct: 33 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 92
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKID 132
A+L D + +++ + E+ + +L++G K D
Sbjct: 93 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI--QEFCPNTKMLLVGCKSD 143
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 9e-08
Identities = 36/171 (21%), Positives = 59/171 (34%), Gaps = 16/171 (9%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQRRFRTM 80
L+G GKTSLV + T GY + IPT N + V V ++L D GQ F +
Sbjct: 25 LVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL 84
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
L S + + E+ P++++G + D E +
Sbjct: 85 RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKV 142
Query: 140 QALVDQLGLESITDREV---------CCYM-ISCKDSINIDAVIDWLIKHS 180
+D+ + + + Y+ S N+ V D I
Sbjct: 143 LIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-07
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTM 80
++G GKT L+ + + E +PTV N +V V + LWD GQ + +
Sbjct: 30 VVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL 89
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKID 132
IL DS+ + + E+ K +P++++ NK D
Sbjct: 90 RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV--KHFCPNVPIILVANKKD 140
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-07
Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 15/160 (9%)
Query: 22 LSLIGLQNAGKTSLVN--TIATGGYSEDMIPTVGFNMRKVT----KGNVTIKL--WDLGG 73
+ LIG Q GK++L N D + + I L W+ G
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKG 68
Query: 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 133
+ + + + + A L V DR S A +L IP++++GNK D
Sbjct: 69 ENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD- 125
Query: 134 SEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
L + V + ++ S N+ +
Sbjct: 126 ---LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-07
Identities = 33/168 (19%), Positives = 54/168 (32%), Gaps = 31/168 (18%)
Query: 22 LSLIGLQNAGKTSLVN--TIATGGYSEDMIPTVGFNMRKVT----KGNVTIKL--WDLGG 73
+ LIG Q GK++L N D + + I L W+ G
Sbjct: 40 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 99
Query: 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID- 132
+ + + + + A L V DR S A +L IP++++GNK D
Sbjct: 100 ENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 157
Query: 133 -------KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 172
SE +A C ++ S N+ +
Sbjct: 158 VRCREVSVSEG---RACAVVFD---------CKFIETSAAVQHNVKEL 193
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-07
Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 28/174 (16%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGG------ 73
+ + G N GK++L+ + T P T G N+ + G ++ D G
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229
Query: 74 -------QRRFRTMWERYCRGVSAILYVVDAADRDSVPIA--RSELHELLMKPSLSGIPL 124
++ + + I+Y+ D ++ P+ E+ +P
Sbjct: 230 SERNEIEKQAILALRYL----GNLIIYIFDPSEHCGFPLEEQIHLFEEV--HGEFKDLPF 283
Query: 125 LVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
LV+ NKID ++ + + L + + + IS ID V + +IK
Sbjct: 284 LVVINKIDVADEENIKRLEKFVKEKGLN-----PIKISALKGTGIDLVKEEIIK 332
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 8e-07
Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 22 LSLIGLQNAGKTSLVNTIATGGYSEDM---IPTVGFNMRKVTKGNVTIKLWDLGG--QRR 76
+ L G N GK+S +N + + + T + ++ D G R
Sbjct: 32 IILSGAPNVGKSSFMNIV-SRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90
Query: 77 FRTMWERYCRGVSA-------ILYVVDAADRDSVPIA--RSELHELLMKPSLSGIPLLVL 127
F ++A IL+++D +++ + I + + + K S +++
Sbjct: 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSI--KSVFSNKSIVIG 148
Query: 128 GNKID--KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
NKID ++LS + + + S + ++ +
Sbjct: 149 FNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACE 201
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Length = 364 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-06
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 23 SLIGLQNAGKTSLVNTIATGG-YSEDMI-----PTVGFNMRKVTKGNVTIKLWDLGGQRR 76
++G N+GKTSL N++ + + P + N I L D G R
Sbjct: 183 GIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKR----YAIPINNRKIMLVDTVGFIR 238
Query: 77 ---------FR-TMWERYCRGVSAILYVVDAADRDSVPIARSEL---HELLMKPSLSGIP 123
F T+ E + A++ V+D+ + + L E+L + +SG P
Sbjct: 239 GIPPQIVDAFFVTLSE--AKYSDALILVIDSTFSE--NLLIETLQSSFEILREIGVSGKP 294
Query: 124 LLVLGNKIDKSEALSKQAL-VDQLGLESITDREVCCYMISCKDSINID 170
+LV NKIDK + L + + + + IS N++
Sbjct: 295 ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLE 342
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 10/159 (6%)
Query: 31 GKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRG 87
GKT ++ + + D IPTV N V V + LWD GQ + + RG
Sbjct: 21 GKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRG 80
Query: 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID----KSEALSKQALV 143
+ + S + L + + +P++++G K+D K ++
Sbjct: 81 ADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVI 139
Query: 144 D-QLGLESITDREVCCYM-ISCKDSINIDAVIDWLIKHS 180
G E Y+ S K N+ AV D IK
Sbjct: 140 TSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-06
Identities = 26/179 (14%), Positives = 52/179 (29%), Gaps = 30/179 (16%)
Query: 4 LDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF--NMRKVTK 61
+ L L + + + G+ +GKT + + + + F N++
Sbjct: 137 YLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 62 GNVTIK-LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 120
++ L L + W S I + + ++EL LL
Sbjct: 195 PETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHS--------IQAELRRLLKSKPYE 244
Query: 121 GIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
LLVL N + + L C +++ + D + H
Sbjct: 245 -NCLLVLLNVQNAK-------AWNAFNLS-------CKILLTTRFKQVTDFLSAATTTH 288
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 4e-06
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 13/134 (9%)
Query: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPI-- 105
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 236
Query: 106 -ARSELHELLM-------KPSLSGIPLLVLGNKIDK-SEALSKQALVDQL--GLESITDR 154
+ +HE + + +++ NK D E + K L S T
Sbjct: 237 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYE 296
Query: 155 EVCCYMISCKDSIN 168
E Y+ + +N
Sbjct: 297 EAAAYIQCQFEDLN 310
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-05
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPI-- 105
+PT G +V ++ D+GGQR R W V++I+++V ++ D V +
Sbjct: 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 210
Query: 106 -ARSELHELLM-------KPSLSGIPLLVLGNKID 132
+ + E P +++ NK D
Sbjct: 211 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-05
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIAR 107
+ T G K V ++D+GGQR R W + V+AI++VV ++ + V
Sbjct: 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIRED 260
Query: 108 SE---LHELLM-------KPSLSGIPLLVLGNKIDKSE 135
++ L E L L I +++ NK D
Sbjct: 261 NQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 298
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-05
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPI-- 105
PT G + NV K+ D+GGQR R W V++IL++V +++ D V +
Sbjct: 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMED 244
Query: 106 -ARSELHELLM-------KPSLSGIPLLVLGNKID 132
+ L E L S + +++ NK D
Sbjct: 245 RQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 4e-05
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 86 RGVSAILYVVDAADRDSVPIARSELHEL-LMKPSLSGIPLLVLGNKIDKSEALSKQALVD 144
V+A+++VVD P + +KP + +P+L++GNK+D ++ + +
Sbjct: 85 ADVNAVVWVVDL----RHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK--YPEEAMK 138
Query: 145 QLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
E + + E M+S D + + L+
Sbjct: 139 AYH-ELLPEAEP--RMLSALDERQVAELKADLLAL 170
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-05
Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 33/173 (19%)
Query: 23 SLIGLQNAGKTSLVNTIA---------TGGYSEDMIPTVGFNMRKVTKGNVTI------- 66
+ G +N GK+S +N + G + D + M G VT+
Sbjct: 38 VVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKS---MELHPIGPVTLVDTPGLD 94
Query: 67 KLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 126
+ +LG R + R + V D+A ++ L + IP +V
Sbjct: 95 DVGELGRLRVEKA--RRVFYRADCGILVTDSAP----TPYEDDVVNLFKE---MEIPFVV 145
Query: 127 LGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
+ NKID K + L ES + +V +S D + + +
Sbjct: 146 VVNKIDVLGE--KAEELKGL-YESRYEAKVLL--VSALQKKGFDDIGKTISEI 193
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 2e-04
Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES 150
+L+V+DA+ E ++L + LV+ NK+D E ++++ + ++LG
Sbjct: 327 VLFVLDASSPLD-----EEDRKIL--ERIKNKRYLVVINKVDVVEKINEEEIKNKLG--- 376
Query: 151 ITDREVCCYMISCKDSINIDAVIDWLIK 178
TDR + IS ++ + + + +
Sbjct: 377 -TDRHMVK--ISALKGEGLEKLEESIYR 401
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 2e-04
Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 21/167 (12%)
Query: 2 GFLDSILNWLRSLFFKQE---MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK 58
G + + + + + + +++ G +GK+S +NT+ G E+ G + +
Sbjct: 49 GNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTG--VVE 106
Query: 59 VTK--------GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY---VVDAADRDSVPIAR 107
VT + WDL G + Y + Y ++ +A R +
Sbjct: 107 VTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATR-----FK 161
Query: 108 SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDR 154
++ S+ + K+D E +
Sbjct: 162 KNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD 208
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 2e-04
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 39 IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 98
+ T G E VG N + +L+D+GGQR R W GV+A+++ +
Sbjct: 162 VRTTGVVEIQFSPVGENKKS----GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217
Query: 99 DRDSVPI---ARSELHELLM-------KPSLSGIPLLVLGNKID 132
+ D ++ + E +P ++ NK D
Sbjct: 218 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 4e-04
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES 150
ILY++D +E+ EL + L + NK+D + A +
Sbjct: 316 ILYLLDLGTERLDDE-LTEIRELK--AAHPAAKFLTVANKLD----RAANADALIRAIAD 368
Query: 151 ITDREVCCYMISCKDSINIDAVIDWLIK 178
T EV IS + ID + +
Sbjct: 369 GTGTEVIG--ISALNGDGIDTLKQHMGD 394
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 39.0 bits (92), Expect = 4e-04
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES 150
+L +DAA + + E+ + PL+++ NKID E +L +
Sbjct: 307 VLLTIDAATGWT-----TGDQEIY--EQVKHRPLILVMNKIDLVEKQLITSLEYPENITQ 359
Query: 151 ITDREVCCYMISCKDSINIDAVIDWLIK 178
I + ID++ +++
Sbjct: 360 I-------VHTAAAQKQGIDSLETAILE 380
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 | Back alignment and structure |
|---|
Score = 38.2 bits (90), Expect = 8e-04
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQAL--- 142
IL+++DA + + P++V+ NKIDK + +
Sbjct: 91 EEADVILFMIDA----TEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIG--PAKNVLPL 144
Query: 143 VDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
+D++ + E+ IS N+D ++ ++K+
Sbjct: 145 IDEIHKKHPELTEI--VPISALKGANLDELVKTILKY 179
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 184 | |||
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 100.0 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 100.0 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 100.0 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 100.0 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 100.0 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 100.0 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 100.0 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 100.0 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 100.0 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 100.0 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 100.0 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 100.0 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 100.0 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 100.0 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 100.0 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 100.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 100.0 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 100.0 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 100.0 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 100.0 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 100.0 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 100.0 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 100.0 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 100.0 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 100.0 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 100.0 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 100.0 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 100.0 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 100.0 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 100.0 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 100.0 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 100.0 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 100.0 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 100.0 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 100.0 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.98 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.98 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.98 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.98 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.98 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.98 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.98 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.98 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.98 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.98 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.98 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.98 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.98 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.98 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.98 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.98 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.98 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.98 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.98 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.98 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.98 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.98 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.98 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.98 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.97 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.97 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.97 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.97 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.97 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.97 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.97 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.97 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.97 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.97 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.97 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.97 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.97 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.97 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.97 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.97 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.97 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.97 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.97 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.97 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.97 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.97 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.97 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.97 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.96 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.96 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.96 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.96 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.93 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.96 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.96 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.96 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.96 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.96 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.96 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.96 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.96 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.95 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.95 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.95 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.95 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.95 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.95 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.95 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.95 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.94 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.94 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.94 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.94 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.94 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.94 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.94 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.94 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.94 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.94 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.93 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.93 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.93 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.93 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.93 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.93 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.93 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.93 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.93 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.93 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.92 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.92 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.92 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.92 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.92 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.92 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.92 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.92 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.91 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.91 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.91 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.91 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.91 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.91 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.91 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.91 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.91 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.91 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.91 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.91 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.9 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.9 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.9 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.9 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.9 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.9 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.9 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.89 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.89 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.89 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.89 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.88 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.88 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.88 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.88 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.87 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.87 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.87 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.87 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.86 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.86 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.86 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.86 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.85 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.84 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.83 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.83 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.82 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.8 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.8 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.79 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.77 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.77 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.77 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.77 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.76 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.76 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.75 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.75 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.74 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.74 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.73 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.71 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.71 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.7 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.7 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.68 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.65 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.6 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.58 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.42 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.35 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.26 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.19 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.19 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.19 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.18 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.15 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.12 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.06 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.05 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.0 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.85 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.82 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.82 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.76 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.72 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.7 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.49 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.43 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.28 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.27 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.2 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 98.11 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.1 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 98.09 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.02 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.01 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.0 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.98 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.91 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.91 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.9 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.79 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.78 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.75 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.74 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.73 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.73 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.71 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.68 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.68 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.67 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.66 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.66 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.64 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.62 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.61 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.6 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.6 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.58 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.58 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.58 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.57 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.57 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.55 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.54 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.54 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.54 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.53 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.53 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.52 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.52 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.52 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.52 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.52 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.52 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.52 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.51 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.51 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.51 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.51 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 97.5 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 97.5 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.5 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.5 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.49 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.49 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.49 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.48 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.48 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.47 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.47 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.47 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.47 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.46 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.46 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.46 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.46 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.46 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.46 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.45 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.45 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.45 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.45 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.44 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.44 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.44 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.44 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.44 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.43 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.43 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.42 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.42 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.41 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.41 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.41 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.41 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.41 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.41 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.41 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.4 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.4 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.4 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 97.4 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.4 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.39 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 97.38 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.38 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.38 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.38 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.37 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 97.37 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.36 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.35 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 97.35 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.35 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 97.35 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.35 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.34 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.34 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.33 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.33 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.33 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.32 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.32 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.32 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.31 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.31 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.3 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.3 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 97.3 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.29 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.28 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.28 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.28 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 97.27 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.27 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.27 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.26 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.26 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.26 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.24 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 97.24 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 97.24 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.24 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.24 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.24 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.24 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.23 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.23 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 97.22 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 97.22 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 97.22 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 97.21 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.21 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.21 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.2 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.2 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 97.2 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 97.19 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 97.18 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.18 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.18 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 97.17 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.17 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 97.15 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.14 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.14 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.14 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 97.14 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.14 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 97.13 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 97.12 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.12 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.11 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 97.11 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.11 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 97.1 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 97.1 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 97.09 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.08 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 97.08 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.07 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 97.06 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.06 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.06 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 97.06 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 97.05 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 97.05 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 97.05 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 97.04 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.01 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 97.01 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 97.01 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.0 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.0 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.99 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.99 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.99 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.98 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.98 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.97 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.97 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.96 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.94 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.93 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.92 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.91 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.91 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.91 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.9 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.9 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.9 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.88 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.88 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.88 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.87 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.85 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 96.85 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.84 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.83 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.83 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.82 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.81 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.81 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.8 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.79 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.79 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.77 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.75 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.74 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.74 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.74 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.74 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.73 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.73 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.71 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.68 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.67 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.67 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.67 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.66 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 96.65 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 96.64 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.64 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.64 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.63 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.62 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 96.61 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.6 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 96.59 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.58 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 96.58 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.57 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 96.57 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.56 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.55 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.54 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.53 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.53 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.52 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.52 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.51 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.51 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.5 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.5 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 96.49 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 96.48 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.47 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.45 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 96.44 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.43 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 96.42 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.42 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.41 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 96.4 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.38 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.38 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.37 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 96.36 |
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=205.58 Aligned_cols=173 Identities=31% Similarity=0.580 Sum_probs=146.0
Q ss_pred HHhhhhc-cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 10 WLRSLFF-KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 10 ~~~~~~~-~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
.+++++. ++.++|+++|++|+|||||++++.++. ...+.+|.+.....+...+..+.+||+||++++...+..+++++
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 86 (186)
T 1ksh_A 8 ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86 (186)
T ss_dssp ---------CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTC
T ss_pred HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCC
Confidence 3444444 678999999999999999999999888 66777888888888888899999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|++++.++.....++..+.......+.|+++|+||+|+.+....++..+.+.........++++++||++|.|
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 166 (186)
T 1ksh_A 87 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGED 166 (186)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCC
Confidence 99999999999999999999988887765556899999999999988777777777776554455677899999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
++++++++.+.+.++
T Consensus 167 i~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 167 LLPGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988753
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=203.69 Aligned_cols=170 Identities=63% Similarity=1.113 Sum_probs=147.9
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..++.++|+|+|++|+|||||++++.++.+...+.+|.+..+..+....+.+.+||+||++++...+..+++++|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 44578999999999999999999999999887888999988888889999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+|++++.++.....|+..+.......++|+++|+||+|+......+++.+.+.........++++++||++|.|++++++
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHH
Confidence 99999999999999998887654456899999999999987666677777766554445677899999999999999999
Q ss_pred HHHHHhhhcC
Q 030000 175 WLIKHSKTAK 184 (184)
Q Consensus 175 ~i~~~~~~~~ 184 (184)
+|.+.+.+++
T Consensus 178 ~l~~~~~~~~ 187 (188)
T 1zd9_A 178 WLIQHSKSRR 187 (188)
T ss_dssp HHHHTCC---
T ss_pred HHHHHHHhhc
Confidence 9999887653
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=206.17 Aligned_cols=180 Identities=33% Similarity=0.566 Sum_probs=153.0
Q ss_pred hHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHH
Q 030000 3 FLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE 82 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 82 (184)
++..+.+++..+..++.++|+++|++|+|||||++++..+.+. ...+|.+.....+...+..+.+||+||++++...+.
T Consensus 6 ~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 84 (189)
T 2x77_A 6 WLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWR 84 (189)
T ss_dssp CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCS
T ss_pred HHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 4445566554432267899999999999999999999887765 356788887778888899999999999999988888
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEee
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+++++|++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.+.........++++++|
T Consensus 85 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 164 (189)
T 2x77_A 85 CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSS 164 (189)
T ss_dssp SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEcc
Confidence 89999999999999999999999999998887766667899999999999988767777777776555555677899999
Q ss_pred eccCCCHHHHHHHHHHHhhhc
Q 030000 163 CKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~~ 183 (184)
|++|.|++++++++.+.+.++
T Consensus 165 a~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 165 SKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHHHT
T ss_pred CCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999998765
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=203.22 Aligned_cols=175 Identities=27% Similarity=0.515 Sum_probs=145.5
Q ss_pred hHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHH
Q 030000 3 FLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE 82 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 82 (184)
++..+.+ ++.++.++|+++|++|+|||||++++.++.+. .+.+|.+.....+...++.+.+||+||++++...+.
T Consensus 4 ~~~~~~~----~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 78 (187)
T 1zj6_A 4 LFTRIWR----LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWN 78 (187)
T ss_dssp HHHHHHH----HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CGGGH
T ss_pred HHHHHHH----hcCCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 4444444 44577899999999999999999999988876 667788877778888899999999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEee
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+....++..+.+.........++++++|
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 158 (187)
T 1zj6_A 79 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 158 (187)
T ss_dssp HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEcc
Confidence 99999999999999999999999999998887764446899999999999987666677777766544445667899999
Q ss_pred eccCCCHHHHHHHHHHHhhh
Q 030000 163 CKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~ 182 (184)
|++|.|+++++++|.+.+..
T Consensus 159 a~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 159 ALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TTTTBTHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=198.33 Aligned_cols=164 Identities=32% Similarity=0.620 Sum_probs=141.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+||+++|++|+|||||++++.++.+.. ..+|.+.....+...++.+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999887763 5678887777788888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHH
Q 030000 100 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
+.++.....|+..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|++++++++.+.
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence 99999999998888776555689999999999998776667777777655555567789999999999999999999999
Q ss_pred hhhcC
Q 030000 180 SKTAK 184 (184)
Q Consensus 180 ~~~~~ 184 (184)
+.++|
T Consensus 160 i~~~k 164 (164)
T 1r8s_A 160 LRNQK 164 (164)
T ss_dssp C----
T ss_pred HhhcC
Confidence 88764
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-37 Score=204.80 Aligned_cols=173 Identities=30% Similarity=0.593 Sum_probs=145.5
Q ss_pred HHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCC
Q 030000 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVS 89 (184)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 89 (184)
.+++++.++.++|+++|++|+|||||++++..+.+. ...+|.+.....++..++.+.+||+||++++...+..+++++|
T Consensus 20 ~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp GGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred HHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 455566778999999999999999999999988775 4567888777788888999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++++|+|++++.++.....++..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999999988877655568999999999999877667777777776555556788999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030000 170 DAVIDWLIKHSKTA 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
+++++++.+.+.++
T Consensus 179 ~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 179 YDGLDWLSHELSKR 192 (192)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988653
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=201.28 Aligned_cols=173 Identities=34% Similarity=0.596 Sum_probs=143.5
Q ss_pred Hhhhhc--cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 11 LRSLFF--KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 11 ~~~~~~--~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
++++.. .+.++|+++|++|+|||||++++.++.+ ....+|.+.....+...++.+.+||+||++.+...+..+++++
T Consensus 6 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 84 (181)
T 1fzq_A 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENT 84 (181)
T ss_dssp HHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred HHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCC
Confidence 344444 5789999999999999999999987754 3456788877777778899999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|++++.++.....|+..++......+.|+++|+||+|+.+....++..+.++........++++++||++|+|
T Consensus 85 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 164 (181)
T 1fzq_A 85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEG 164 (181)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCC
Confidence 99999999999999999988888876654556899999999999987766667777666544445567899999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q 030000 169 IDAVIDWLIKHSKTAK 184 (184)
Q Consensus 169 i~~l~~~i~~~~~~~~ 184 (184)
++++|+++.+.+.++|
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (181)
T 1fzq_A 165 VQDGMNWVCKNVNAKK 180 (181)
T ss_dssp HHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999887653
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=195.60 Aligned_cols=167 Identities=34% Similarity=0.659 Sum_probs=146.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.++.++|+++|++|+|||||++++.++.+. ...+|.+.....+......+.+||+||++++...+..+++++|++++|+
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 356799999999999999999999988875 4667888888888888999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
|++++.++.....++..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|+++++++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (171)
T 1upt_A 83 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEW 162 (171)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHH
Confidence 99999999999999888877654568999999999999887777777777765555566778999999999999999999
Q ss_pred HHHHhhhc
Q 030000 176 LIKHSKTA 183 (184)
Q Consensus 176 i~~~~~~~ 183 (184)
+.+.+.++
T Consensus 163 l~~~i~~~ 170 (171)
T 1upt_A 163 LVETLKSR 170 (171)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhhc
Confidence 99988764
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=199.71 Aligned_cols=173 Identities=32% Similarity=0.581 Sum_probs=145.6
Q ss_pred HHhhhhc-cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 10 WLRSLFF-KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 10 ~~~~~~~-~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
.+.+++. ++.++|+++|++|+|||||++++.++.+ ....+|.+.....+...+..+.+||+||++++...+..+++++
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 86 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADT 86 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTE
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccC
Confidence 3444555 7889999999999999999999997777 5667788877777888889999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|++++.++.....++..+.......+.|+++|+||+|+.+....+++.+.+.........++++++||++|+|
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 166 (183)
T 1moz_A 87 AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEG 166 (183)
T ss_dssp EEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 99999999999999999999998887765567899999999999987767777777776655555677899999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
++++++++.+.+.++
T Consensus 167 i~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 167 ITEGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988653
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=202.07 Aligned_cols=170 Identities=26% Similarity=0.564 Sum_probs=143.9
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.....+|+|+|++|+|||||++++.++.+.. .+.+|.+.....++...+.+.+||+||++++...+..+++++|+++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 345578999999999999999999999999887 7789999888889999999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCC-------CCCcEEEEEeCCCcccccCHHHHHHHhCCCcc-CCCceeEEEeeec
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSL-------SGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCK 164 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 164 (184)
+|+|++++.++.....|+..++..... .++|+++|+||+|+......+++.+.++.... ....++++++||+
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 171 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGL 171 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTT
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCC
Confidence 999999999999999998888654221 37999999999999887777777777765433 4467789999999
Q ss_pred cCCCHHHHHHHHHHHhhhc
Q 030000 165 DSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~~ 183 (184)
+|.|++++|++|.+.+.+.
T Consensus 172 ~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 172 KGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp TTBTHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 9999999999999987653
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=206.86 Aligned_cols=156 Identities=22% Similarity=0.394 Sum_probs=121.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.+||+|+|++|+|||||++++..+.+...+.+|.+..+.. +....+.+.+|||+|+++|......++++++++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 56999999999999999999999999999999998855433 33455889999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CH---HHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SK---QALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|||++++.+|..+..|+..+..... .++|+++|+||+|+.+.. .. +++.+.+ ++++++|||++|.|
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~--------~~~~~e~SAktg~n 162 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAKEL--------NVMFIETSAKAGYN 162 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEEEBTTTTBS
T ss_pred EeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHHHHh--------CCeeEEEeCCCCcC
Confidence 9999999999999999988765433 679999999999997643 22 2333333 24699999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
|+++|+.|.+.+..
T Consensus 163 V~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 163 VKQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=198.24 Aligned_cols=169 Identities=30% Similarity=0.606 Sum_probs=142.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..+.++|+++|++|+|||||++++.+.. +...+.+|.+.....+...+..+.+||+||++++...+..+++++|++++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV 97 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 3467999999999999999999999887 566777898988888888889999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCC--CCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSL--SGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++.....++..+...... .++|+++|+||+|+.+....++..+.+.........++++++||++|.|++++
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence 9999988899998888888776544 68999999999999877667777776654444445678999999999999999
Q ss_pred HHHHHHHhhhcC
Q 030000 173 IDWLIKHSKTAK 184 (184)
Q Consensus 173 ~~~i~~~~~~~~ 184 (184)
+++|.+.+.+.|
T Consensus 178 ~~~l~~~i~~~k 189 (190)
T 2h57_A 178 VDWLQDQIQTVK 189 (190)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHhc
Confidence 999999887643
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=196.70 Aligned_cols=164 Identities=27% Similarity=0.499 Sum_probs=140.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..+.++|+++|++|+|||||++++.++.+ ....+|.+.....+...+..+.+||+||++++...+..+++++|++++|+
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 96 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 96 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 34679999999999999999999998887 55667888777778888899999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
|++++.++.....++..+.......++|+++|+||+|+.+....+++.+.+.........++++++||++|.|+++++++
T Consensus 97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 176 (181)
T 2h17_A 97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEW 176 (181)
T ss_dssp ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHH
Confidence 99999999999999988876544568999999999999876667777777765555556678999999999999999999
Q ss_pred HHHHh
Q 030000 176 LIKHS 180 (184)
Q Consensus 176 i~~~~ 180 (184)
|.+.+
T Consensus 177 l~~~l 181 (181)
T 2h17_A 177 MMSRL 181 (181)
T ss_dssp HHTC-
T ss_pred HHhhC
Confidence 98653
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=195.97 Aligned_cols=164 Identities=32% Similarity=0.525 Sum_probs=137.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..+.++|+++|++|+|||||++++.++.+. .+.+|.+.....+...++.+.+||+||++++...+..+++++|++++|+
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 356789999999999999999999988775 4667888877888888899999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc-------cCCCceeEEEeeeccCCC
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES-------ITDREVCCYMISCKDSIN 168 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++.++.....|+..++......+.|+++|+||+|+.+....++..+.+.... .....++++++||++|+|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 9999999999999998887655556899999999999987666667766665432 123467899999999999
Q ss_pred HHHHHHHHHHHh
Q 030000 169 IDAVIDWLIKHS 180 (184)
Q Consensus 169 i~~l~~~i~~~~ 180 (184)
++++++++.+.+
T Consensus 179 i~~l~~~l~~~l 190 (190)
T 1m2o_B 179 YLEAFQWLSQYI 190 (190)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhhC
Confidence 999999998653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=195.69 Aligned_cols=164 Identities=29% Similarity=0.572 Sum_probs=131.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..+.++|+++|++|+|||||++++.++.+. .+.+|.+.....+...+..+.+|||||++++...+..+++++|++++|+
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 356789999999999999999999987764 4567777777778888899999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc---------c---CCCceeEEEeee
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------I---TDREVCCYMISC 163 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa 163 (184)
|++++.++.....|+..++......++|+++|+||+|+......++..+.+.... . ....++++++||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999998887665556899999999999987656666666655321 1 124578999999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 030000 164 KDSINIDAVIDWLIKHS 180 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~ 180 (184)
++|+|++++|+++.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998765
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=207.41 Aligned_cols=167 Identities=33% Similarity=0.626 Sum_probs=144.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++.++|+|+|++|+|||||++++.++.+... .+|.+.....++..++.+.+|||||++.+...+..+++++|++|+|+|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 4567999999999999999999998887543 478888888899999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
++++.++.....++..++......++|+++|+||+|+.+....+++.+.++........++++++||++|.||+++|++|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999988877666789999999999998887888888888877666778899999999999999999999
Q ss_pred HHHhhhcC
Q 030000 177 IKHSKTAK 184 (184)
Q Consensus 177 ~~~~~~~~ 184 (184)
.+.+.+++
T Consensus 322 ~~~l~~~k 329 (329)
T 3o47_A 322 SNQLRNQK 329 (329)
T ss_dssp HHHHTC--
T ss_pred HHHHHhcC
Confidence 99988764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=186.99 Aligned_cols=160 Identities=18% Similarity=0.277 Sum_probs=125.7
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+.+||+++|++|||||||+++++++.+...+.+|.+.....+...+ +.+.+||++|++++. +++++|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 3457899999999999999999999999988777777654444444444 778899999998876 677899999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc----cCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA----LSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|||++++.++..+..|+..+.......++|+++|+||+|+... ...++..+.... ....+++++||++|.|
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTTBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCCCC
Confidence 99999999999999999888876655568999999999998421 222222222111 1124799999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
++++|+++.+.+.+.
T Consensus 167 v~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 167 VERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=186.94 Aligned_cols=159 Identities=26% Similarity=0.379 Sum_probs=126.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.++|+++|++|+|||||++++.++.+.....++.+.... .+. ...+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4689999999999999999999999887777777774432 333 345789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc---C--HHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---S--KQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. . .+...+.. ....++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA-----EEKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999999998888887776543 3579999999999997642 1 11111111 11234799999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
++++++++.+.+.+
T Consensus 156 i~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 156 VNDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=182.28 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=128.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+..... ++...+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999988887777777755433 334467899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++.....|+..+.......+.|+++|+||+|+.+... .++..+.... ....+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ----WCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----TTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH----ccCCcEEEecCCCCCCHHHH
Confidence 99999988888888887776654456899999999999976432 2222222111 12457999999999999999
Q ss_pred HHHHHHHhh
Q 030000 173 IDWLIKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
++++.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998874
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=185.07 Aligned_cols=162 Identities=17% Similarity=0.289 Sum_probs=126.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+.... . +....+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999998887777666653333 2 33344668899999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....+..+.+.. ...++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR----SYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999888877666678999999999999754322222222211 112369999999999999999
Q ss_pred HHHHHHhhh
Q 030000 174 DWLIKHSKT 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++.+.+..
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=179.68 Aligned_cols=160 Identities=15% Similarity=0.120 Sum_probs=106.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE---EEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|+|||||++++.+..... ..++.+... ..+....+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 5899999999999999999998665432 233333222 224455678999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|++++.++.....|+..+.......++|+++|+||+|+.+.... ++...... ....+++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----VFDCKFIETSAALHHNVQALF 155 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-----HTTCEEEECBGGGTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-----HhCCcEEEeccCCCCCHHHHH
Confidence 99999999999999998877766678999999999999754322 22111111 123479999999999999999
Q ss_pred HHHHHHhhhcC
Q 030000 174 DWLIKHSKTAK 184 (184)
Q Consensus 174 ~~i~~~~~~~~ 184 (184)
+++.+.+..+|
T Consensus 156 ~~l~~~~~~~r 166 (166)
T 3q72_A 156 EGVVRQIRLRR 166 (166)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999988764
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=179.76 Aligned_cols=160 Identities=22% Similarity=0.312 Sum_probs=126.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-E--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-V--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+..... + ....+.+.+||+||++++...+..+++++|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 57899999999999999999999988877777776654432 3 33447899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..+... ...++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHHH
Confidence 99999999999988888876655556899999999999976432 222222221 11347999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
++++.+.+.+
T Consensus 158 ~~~l~~~i~~ 167 (168)
T 1u8z_A 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998865
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=187.67 Aligned_cols=161 Identities=20% Similarity=0.288 Sum_probs=128.0
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
+..+.+||+++|.+|+|||||++++.++.+...+.+|.+..+.. +....+.+.+||+||++++...+..+++++|++
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 44578999999999999999999999999888877887755433 335668899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-----HHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++|+|++++.++..+..|+..+.......++|+++|+||+|+.+.... ..+.+.. .++++++||++|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~~ 171 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW--------GATFMESSAREN 171 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECCTTCH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh--------CCeEEEEeCCCC
Confidence 999999999999999999998877766678999999999998754322 2222222 247999999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 030000 167 INIDAVIDWLIKHSKTA 183 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~~ 183 (184)
.|++++|++|.+.+.+.
T Consensus 172 ~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 172 QLTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988654
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=182.78 Aligned_cols=160 Identities=19% Similarity=0.277 Sum_probs=130.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-Ee--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.+||+++|++|+|||||++++.++.+...+.+|.+..+.. +. ...+.+.+||+||++++...+..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 3467999999999999999999999988887777777754432 22 34466788999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHH---HHHHHhCCCccCCCceeEEEeeec-cC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQ---ALVDQLGLESITDREVCCYMISCK-DS 166 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~Sa~-~~ 166 (184)
+|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..+ ++.+.++ ++++++||+ +|
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~~~Sa~~~~ 166 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN--------IPYIETSAKDPP 166 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT--------CCEEEEBCSSSC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC--------CeEEEeccCCCC
Confidence 999999999999999888887665555789999999999986532 222 2233222 469999999 99
Q ss_pred CCHHHHHHHHHHHhhhc
Q 030000 167 INIDAVIDWLIKHSKTA 183 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~~ 183 (184)
.|++++|+++.+.+.++
T Consensus 167 ~~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 167 LNVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp BSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 99999999999988753
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=181.09 Aligned_cols=162 Identities=22% Similarity=0.380 Sum_probs=130.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeec-----------CEEEEEEEcCCccchhHhH
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKG-----------NVTIKLWDLGGQRRFRTMW 81 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~-----------~~~~~~~d~~g~~~~~~~~ 81 (184)
....++|+++|++|+|||||++++.++.+.....+|.+..+. .+... .+.+.+||+||++++...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 356799999999999999999999999888777888886554 23322 5789999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEE
Q 030000 82 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCY 159 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 159 (184)
..+++++|++++|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..+.... ..++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-----YGIPYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----HTCCEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----cCCCEE
Confidence 999999999999999999999988888888776655446899999999999976322 2222221111 123699
Q ss_pred EeeeccCCCHHHHHHHHHHHhhh
Q 030000 160 MISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 160 ~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
++||++|.|+++++++|.+.+.+
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=182.43 Aligned_cols=162 Identities=22% Similarity=0.388 Sum_probs=130.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.+..+...+.+|.+.... .+ ....+.+.+||+||++++...+..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45799999999999999999999999888777777764443 23 334588999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHHH
Confidence 999999998998888888888766555689999999999995432 2222222211 1234799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+++++.+.+.+.
T Consensus 168 l~~~l~~~~~~~ 179 (195)
T 1x3s_A 168 AFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=183.17 Aligned_cols=164 Identities=21% Similarity=0.334 Sum_probs=131.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-Eeec--CEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. +... .+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 4567999999999999999999999998887777877755433 3333 478999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|+|++++.++.....|+..++......++|+++|+||+|+.+.... .+....+. ....++++++||++|.|+++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG----ASHHVAYFEASAKLRLNVDE 161 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECBTTTTBSHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEecCCCCCCHHH
Confidence 99999999999999888888766555568999999999999764322 11111111 11245799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
++++|.+.+.+.
T Consensus 162 l~~~l~~~~~~~ 173 (181)
T 2fn4_A 162 AFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988653
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=182.11 Aligned_cols=161 Identities=27% Similarity=0.379 Sum_probs=121.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||++++.++.+...+.+|.+..+ ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 4569999999999999999999999988777777876433 3444443 78999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCce-eEEEeeeccCCCH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREV-CCYMISCKDSINI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 169 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++..+.... .++ +++++||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH-----YDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH-----cCCCEEEEEeCCCCCCH
Confidence 9999999989988888887775543 3679999999999997632 22222222211 123 7999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030000 170 DAVIDWLIKHSKTA 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
+++|++|.+.+.++
T Consensus 181 ~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 181 EEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988653
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=176.90 Aligned_cols=160 Identities=26% Similarity=0.368 Sum_probs=128.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+.....++.+.... .+ ....+.+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999998887777777765443 22 334678999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999989998888887775543 25799999999999965322 222222211 123579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~~~~ 169 (170)
T 1r2q_A 158 EIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=183.99 Aligned_cols=163 Identities=21% Similarity=0.286 Sum_probs=131.2
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEee--cCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...+.++|+|+|++|+|||||++++.++.+...+.+|.+.... .+.. ..+.+.+||+||++++...+..+++++|++
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 4456799999999999999999999998887777777764442 3333 346899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..+... ....+++++||++|.|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRANV 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCeEEEEeCCCCCCH
Confidence 99999999999999988888887665556899999999999976432 223222221 11246999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030000 170 DAVIDWLIKHSKT 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
++++++|.+.+..
T Consensus 165 ~~l~~~l~~~i~~ 177 (206)
T 2bov_A 165 DKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=181.33 Aligned_cols=162 Identities=18% Similarity=0.261 Sum_probs=128.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-Eeec--CEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+..... +... .+.+.+||+||++++...+..+++++|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 467999999999999999999999888887777877755432 3333 4788999999999998888999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..+... ...++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-----SWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH-----HhCCcEEEEecCCCCCHHH
Confidence 999999999999999988887766667899999999999865332 222222211 1134799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+|+++.+.+...
T Consensus 159 l~~~l~~~~~~~ 170 (181)
T 3t5g_A 159 VFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=177.70 Aligned_cols=160 Identities=16% Similarity=0.284 Sum_probs=127.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+... ..+. ...+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 468999999999999999999999888777767665333 2233 3346699999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++.....++..+.......+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCCEEEecCCCCcCHHHH
Confidence 99999999998988888887665557899999999999865432 222111111 11246999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
++++.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998865
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=179.14 Aligned_cols=163 Identities=25% Similarity=0.394 Sum_probs=126.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+.... .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 46799999999999999999999998888777777775543 33333 378999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC---CCCCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMK---PSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|++++.++.....|+..+... ....++|+++|+||+|+.+.. ..++..+.... ....+++++||++|.|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEECCTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh----cCCceEEEEeCCCCCC
Confidence 999999998888888777766432 223678999999999996432 23333322210 2245799999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
++++++++.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 161 VAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=178.77 Aligned_cols=162 Identities=23% Similarity=0.342 Sum_probs=129.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
..+.+||+++|++|+|||||+++++++.+.....+|.+..... +....+.+.+||+||++++...+..+++++|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 3568999999999999999999999998877777777755433 233568899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|+
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAE-----SIGAIVVETSAKNAINI 173 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCH
Confidence 99999999999999988887765432 3579999999999997532 2333333221 12357999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030000 170 DAVIDWLIKHSKTA 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
++++++|.+.+.+.
T Consensus 174 ~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 174 EELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987653
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=181.11 Aligned_cols=162 Identities=22% Similarity=0.305 Sum_probs=130.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-Ee--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.+||+++|++|+|||||++++.++.+...+.+|.+..... +. ...+.+.+||+||++++...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 457999999999999999999999988877777776644432 33 334689999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|+++
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHH
Confidence 99999999999998888887766555689999999999997642 2233332221 1234799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
++++|.+.+.++
T Consensus 171 l~~~l~~~i~~~ 182 (187)
T 2a9k_A 171 VFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=186.23 Aligned_cols=161 Identities=18% Similarity=0.225 Sum_probs=125.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.+||+++|++|+|||||++++.++.+...+.+|.+..+.. +....+.+.+||+||++++...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 3467999999999999999999999999888888888766544 2234577899999999999999999999999999
Q ss_pred EEEeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCcccc----cCHHHHHHHhCCCccCCCcee-EEEeeeccC
Q 030000 93 YVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEA----LSKQALVDQLGLESITDREVC-CYMISCKDS 166 (184)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 166 (184)
+|+|++++.++..+ ..|...+... ..++|+++|+||+|+.+. ...++..+.... .+++ ++++||++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK-----LGCVAYIEASSVAK 172 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH-----HTCSCEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh-----cCCCEEEEeecCCC
Confidence 99999999999887 4454444322 357999999999999753 122222221111 1223 899999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 030000 167 INIDAVIDWLIKHSKTA 183 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~~ 183 (184)
.|++++|+++.+.+.++
T Consensus 173 ~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp BSHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999988664
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=182.09 Aligned_cols=160 Identities=24% Similarity=0.346 Sum_probs=127.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||+++++++.+...+.+|.+..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35699999999999999999999999888778888775543 33333 478999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999999988888877765432 35799999999999975322 222221111 123469999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|+++.+.+..
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=182.95 Aligned_cols=166 Identities=20% Similarity=0.212 Sum_probs=127.7
Q ss_pred hhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-E--eecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 12 RSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-V--TKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
++....+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. + ....+.+.+||+||+++ ...+..+++++
T Consensus 21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 99 (196)
T 2atv_A 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWG 99 (196)
T ss_dssp ------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHC
T ss_pred hccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccC
Confidence 33444678999999999999999999999998887777777755533 3 33457899999999988 77788889999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
|++++|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..+... ...++++++||++|
T Consensus 100 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g 174 (196)
T 2atv_A 100 EGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSACTG 174 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCTTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCeEEEECCCcC
Confidence 99999999999999988888887776544446899999999999976422 222222111 11347999999999
Q ss_pred C-CHHHHHHHHHHHhhhc
Q 030000 167 I-NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 167 ~-~i~~l~~~i~~~~~~~ 183 (184)
. |++++|+++.+.+.++
T Consensus 175 ~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 175 EGNITEIFYELCREVRRR 192 (196)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhh
Confidence 9 9999999999988654
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=178.40 Aligned_cols=158 Identities=27% Similarity=0.438 Sum_probs=128.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||++++.++.+...+.++.+... ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 4579999999999999999999999988877777776444 3344444 78999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-----HHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.... +++.+.+ .++++++||++|.
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNAT 164 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT--------TCCEEEECTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHc--------CCcEEEEeCCCCC
Confidence 9999999999988888877665443 357999999999999764322 2222222 2369999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030000 168 NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~~ 183 (184)
|++++|+++.+.+.+.
T Consensus 165 gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 165 NVEQSFMTMAAEIKKR 180 (196)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988653
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=184.27 Aligned_cols=158 Identities=22% Similarity=0.275 Sum_probs=126.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
....+||+++|++|+|||||++++.++.+...+.+|.+..+.. +....+.+.+||+||++++...+..+++++|+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 3467999999999999999999999999988888888866543 3455688999999999999999999999999999
Q ss_pred EEEeCCCCCCHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--------------cCHH---HHHHHhCCCccCCC
Q 030000 93 YVVDAADRDSVPI-ARSELHELLMKPSLSGIPLLVLGNKIDKSEA--------------LSKQ---ALVDQLGLESITDR 154 (184)
Q Consensus 93 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~---~~~~~~~~~~~~~~ 154 (184)
+|+|++++.++.. ...|+..+.... .++|+++|+||+|+.+. ...+ .+.+.+
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------- 173 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL-------- 173 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH--------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc--------
Confidence 9999999999998 577776665442 57999999999999653 1121 222222
Q ss_pred ce-eEEEeeeccCCC-HHHHHHHHHHHhhhc
Q 030000 155 EV-CCYMISCKDSIN-IDAVIDWLIKHSKTA 183 (184)
Q Consensus 155 ~~-~~~~~Sa~~~~~-i~~l~~~i~~~~~~~ 183 (184)
++ +++++||++|.| ++++|+++.+.+...
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 23 699999999998 999999999887653
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=180.26 Aligned_cols=163 Identities=26% Similarity=0.406 Sum_probs=125.4
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeec--CEEEEEEEcCCccchh-HhHHhhccCCC
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFR-TMWERYCRGVS 89 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~-~~~~~~~~~~~ 89 (184)
...+.+||+++|++|+|||||+++++++.+.....+|.+... ..+... .+.+.+||+||++++. ..+..+++++|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 345679999999999999999999999888777777776443 334433 4789999999999998 78899999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccC-
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDS- 166 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~- 166 (184)
++++|+|++++.++..+..|+..+.......++|+++|+||+|+.+... .++..+... ...++++++||++|
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEECCSSSGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-----HcCCEEEEEeCCcCC
Confidence 9999999999999998888888877665557899999999999966432 222221111 12346999999999
Q ss_pred --CCHHHHHHHHHHHhhh
Q 030000 167 --INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 --~~i~~l~~~i~~~~~~ 182 (184)
+|++++|++|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999988754
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=177.27 Aligned_cols=161 Identities=22% Similarity=0.324 Sum_probs=127.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+++|++|+|||||+++++++.+.....+|.+.... .+. ...+.+.+||+||++++...+..+++++|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 46799999999999999999999999887777677664432 333 34578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++..+... ...++++++||++|+|++
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ-----ENGLFFMETSAKTATNVK 163 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCSSSCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHH
Confidence 9999999989988888888776543 35899999999999965332 223222221 123479999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
+++++|.+.+...
T Consensus 164 ~l~~~l~~~~~~~ 176 (181)
T 2efe_B 164 EIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987653
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=177.17 Aligned_cols=160 Identities=21% Similarity=0.286 Sum_probs=126.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+... ..+. ...+.+.+||+||++++...+..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 4679999999999999999999999888777777766443 2233 34578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++..+.... ..++++++||++|.|++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 166 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-----NGLLFLEASAKTGENVE 166 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTHH
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEeCCCCCCHH
Confidence 9999999988888888877665432 25799999999999965432 2222222211 23479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 167 ~l~~~l~~~i~~ 178 (179)
T 1z0f_A 167 DAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=180.26 Aligned_cols=162 Identities=21% Similarity=0.325 Sum_probs=125.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEeecC---EEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN---VTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+ .....+...+ +.+.+||+||++++...+..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4679999999999999999999998887766666766 3344555544 8999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCc-EEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPS-LSGIP-LLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++|+|++++.++.....|+..+..... ..+.| +++|+||+|+.+... .++..+... ..+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----ENGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----HcCCcEEEEeCCCCC
Confidence 999999999888888877776644211 01345 899999999976322 222222111 112479999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030000 168 NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~~ 183 (184)
|+++++++|.+.+.+.
T Consensus 159 gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGI 174 (178)
T ss_dssp THHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988765
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=177.70 Aligned_cols=159 Identities=23% Similarity=0.421 Sum_probs=126.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..+||+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999998888777777764433 333 33578999999999999988999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Confidence 9999999888888888877765543 5799999999999976322 222222211 113479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=175.45 Aligned_cols=160 Identities=22% Similarity=0.364 Sum_probs=127.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+.....++.+.... .+. .....+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 46799999999999999999999999887777777775443 233 34478999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+... ..+..|+++|+||+|+.+... .++...... ....+++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCHH
Confidence 999999998888888877766543 346799999999999976432 222222111 123579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=177.70 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=114.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCc--cceeEEEEe--ecCEEEEEEEcCCccchhH-hHHhhccCCCEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPT--VGFNMRKVT--KGNVTIKLWDLGGQRRFRT-MWERYCRGVSAILY 93 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t--~~~~~~~~~--~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~i~ 93 (184)
.+||+++|++|+|||||++++.+........++ .......+. ...+.+.+||+||++++.. .+..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 589999999999999999999876654443333 333333333 3457889999999998876 66677888999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|+++++++.....|+..+.......++|+++|+||+|+.+... .++..+... ...++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH-----HcCCcEEEecCccCCCHHH
Confidence 999999999999999999887765556899999999999975332 222222111 1134799999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030000 172 VIDWLIKHSKTAK 184 (184)
Q Consensus 172 l~~~i~~~~~~~~ 184 (184)
+|+++.+.+..+|
T Consensus 157 l~~~l~~~i~~~r 169 (169)
T 3q85_A 157 LFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998765
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=182.72 Aligned_cols=166 Identities=22% Similarity=0.352 Sum_probs=116.1
Q ss_pred hhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEE--eecCEEEEEEEcCCccchhHhHHhhccC
Q 030000 12 RSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKV--TKGNVTIKLWDLGGQRRFRTMWERYCRG 87 (184)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 87 (184)
++...++.++|+++|++|+|||||+++++++.+.....+|.+... ..+ +...+.+.+||+||++++...+..++++
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 334556789999999999999999999999888766667766433 223 3445789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc------c--CHHHHHHHhCCCccCCCceeEE
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA------L--SKQALVDQLGLESITDREVCCY 159 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------~--~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+|++++|+|++++.++.....|+..+... ...++|+++|+||+|+.+. . ..+... .+. ....++++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~-~~~----~~~~~~~~ 174 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGE-KLA----MTYGALFC 174 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHH-HHH----HHHTCEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHH-HHH----HHcCCeEE
Confidence 99999999999998998888877665433 2257999999999999632 1 111111 111 11234799
Q ss_pred EeeeccCCCHHHHHHHHHHHhhhc
Q 030000 160 MISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 160 ~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
++||++|.|++++++++.+.+.++
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHTC-
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999988653
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=183.98 Aligned_cols=173 Identities=20% Similarity=0.250 Sum_probs=121.4
Q ss_pred HHHHHHhhh-hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhH
Q 030000 6 SILNWLRSL-FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMW 81 (184)
Q Consensus 6 ~~~~~~~~~-~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~ 81 (184)
...+++.+. ...+.+||+++|++|+|||||++++..+.+...+.+|.+..... ++...+.+.+||+||++++...+
T Consensus 16 ~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 95 (204)
T 4gzl_A 16 PRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 95 (204)
T ss_dssp --------------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTG
T ss_pred cchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 344555443 33567999999999999999999999988877777776644332 33455778899999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc---------
Q 030000 82 ERYCRGVSAILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI--------- 151 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--------- 151 (184)
..+++++|++++|+|++++.++.... .|+..+.... .++|+++|+||+|+.......+..+.......
T Consensus 96 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (204)
T 4gzl_A 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 173 (204)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHH
Confidence 99999999999999999999998887 5555443332 57999999999999764332222221111000
Q ss_pred -CCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 152 -TDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 152 -~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
.....+++++||++|+|++++|+++.+.+
T Consensus 174 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 174 KEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 01123699999999999999999998865
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7e-32 Score=183.33 Aligned_cols=161 Identities=20% Similarity=0.366 Sum_probs=127.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee--ec----------CEEEEEEEcCCccchhHhHH
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KG----------NVTIKLWDLGGQRRFRTMWE 82 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~--~~----------~~~~~~~d~~g~~~~~~~~~ 82 (184)
+..+||+++|++|+|||||+++++++.+...+.+|.+..+.. +. .. .+.+.+||+||++++...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 457999999999999999999999988877667777654432 22 22 57899999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEE
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
.+++++|++++|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..+... ...+++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH-----HCCCcEEE
Confidence 99999999999999999989888888777665544446899999999999976432 222222111 11246999
Q ss_pred eeeccCCCHHHHHHHHHHHhhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+||++|.|+++++++|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-31 Score=176.32 Aligned_cols=160 Identities=26% Similarity=0.441 Sum_probs=125.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+...+.++.+... ..+...+ +.+.+||+||++.+...+..+++++|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 4679999999999999999999999888777777766443 3444444 88999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... .++|+++|+||+|+.+.... ++...... ...++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAG-----QMGIQLFETSAKENVNVE 159 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHH-----HcCCeEEEEECCCCCCHH
Confidence 9999999999999888888775532 47999999999998764322 22211111 112369999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
++++++.+.+.+.
T Consensus 160 ~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 160 EMFNCITELVLRA 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-32 Score=179.95 Aligned_cols=158 Identities=25% Similarity=0.444 Sum_probs=127.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
.+..++|+++|++|+|||||++++.++.+.....+|.+.... .+. ...+.+.+||+||++++...+..+++++|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 345799999999999999999999999887777777775443 233 3457899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--H---HHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--K---QALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... . +++.+.+ +++++++||++|
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~g 169 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDL--------GFEFFEASAKEN 169 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHc--------CCeEEEEECCCC
Confidence 99999999988888888877765432 35799999999999976432 2 2222222 237999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|+++++++|.+.+.+
T Consensus 170 ~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 170 INVKQVFERLVDVICE 185 (189)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998764
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-32 Score=177.59 Aligned_cols=161 Identities=19% Similarity=0.145 Sum_probs=113.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEe--ecCEEEEEEEcCCccc--hhHhHHhhccCCCE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVT--KGNVTIKLWDLGGQRR--FRTMWERYCRGVSA 90 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~--~~~~~--~~~~~~~~~d~~g~~~--~~~~~~~~~~~~~~ 90 (184)
.+.++|+++|++|+|||||++++.+..+.... ++.+.. ...+. ...+.+.+||+||++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 45799999999999999999999987765432 233322 23333 3446889999999987 55666778899999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++...... ...++++++||++|.|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~g 155 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-----VFDCKFIETSATLQHN 155 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HHTSEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-----HcCCeEEEEecCCCCC
Confidence 999999999999999988888776655556899999999999976432 222111110 1124799999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
+++++++|.+.+...
T Consensus 156 i~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 156 VAELFEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987653
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-32 Score=178.90 Aligned_cols=162 Identities=22% Similarity=0.297 Sum_probs=125.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. .....+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 57899999999999999999999988877777777755443 223447899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKP-SLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|++++.++.....++..+.... ...+.|+++|+||+|+.+.... .+..... ....++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-----RTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEecCCCCcCHHH
Confidence 99999888888777776654421 2247999999999999764332 1111111 11134799999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030000 172 VIDWLIKHSKTAK 184 (184)
Q Consensus 172 l~~~i~~~~~~~~ 184 (184)
++++|.+.+++++
T Consensus 157 l~~~l~~~~~~~~ 169 (172)
T 2erx_A 157 LFQELLNLEKRRT 169 (172)
T ss_dssp HHHHHHHTCCSSC
T ss_pred HHHHHHHHHhhhh
Confidence 9999999887653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-31 Score=176.20 Aligned_cols=160 Identities=21% Similarity=0.335 Sum_probs=127.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+... ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999988877777776443 3344444 78999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+..... ..+..+... ...++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQ-----ENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHH
Confidence 9999999989888888877664432 25799999999999965322 222222211 123579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|+++.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=8.7e-32 Score=177.72 Aligned_cols=162 Identities=25% Similarity=0.424 Sum_probs=118.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEE--Ee--ecCEEEEEEEcCCccchhHhHHhhccCCCE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYS-EDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSA 90 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (184)
.++.++|+++|++|+|||||++++.++.+. ..+.+|.+..+.. +. ...+.+.+||+||++++...+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356799999999999999999999988874 3556666655442 23 334689999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|++++.++..+..|+..+..... .++|+++|+||+|+..... .++..+... ...++++++||++|.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCCCC
Confidence 9999999998888888888777655432 6799999999999975432 222221111 1124699999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
++++++++.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-31 Score=177.19 Aligned_cols=160 Identities=24% Similarity=0.375 Sum_probs=128.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--E--eecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+|+|++|+|||||++++.+..+...+.+|.+..... + ....+.+.+||+||++++...+..+++++|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 356999999999999999999999998887777777754432 2 234578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+..... .++...... ...++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAE-----NNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999988888888887775543 36799999999999976432 222222211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (193)
T 2oil_A 177 LAFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.3e-32 Score=177.19 Aligned_cols=160 Identities=27% Similarity=0.334 Sum_probs=120.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+.... .+. ...+.+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 46799999999999999999999998887777777775443 333 34578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++..+... ....+++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHH
Confidence 9999999989988888877654322 2478999999999997642 2222222221 113479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-32 Score=178.63 Aligned_cols=160 Identities=24% Similarity=0.359 Sum_probs=120.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..++|+++|++|+|||||++++.++.+.....+|.+... ..+.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999888777777766443 33333 35789999999999999888999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHH
Confidence 999999888888888877765443 25799999999999944322 222211111 11246999999999999999
Q ss_pred HHHHHHHhhhc
Q 030000 173 IDWLIKHSKTA 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
++++.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988653
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=9.5e-32 Score=175.08 Aligned_cols=161 Identities=17% Similarity=0.284 Sum_probs=126.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+.... .+. ...+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 3589999999999999999999988887776676664432 233 3457789999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+|++++.++.....|+..+.......+.|+++++||+|+.+.....+..+.+.. ..+++++++||++|.|++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR----SYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH----HHTCCEEEECTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHH
Confidence 999999888888888877765544457999999999998763222121111110 1123699999999999999999
Q ss_pred HHHHHhhh
Q 030000 175 WLIKHSKT 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
++.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998865
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.3e-32 Score=179.16 Aligned_cols=164 Identities=16% Similarity=0.238 Sum_probs=117.2
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...+.++|+++|.+|+|||||++++.++.+.....+|.+.... .+. ...+.+.+||+||++++...+..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 3446799999999999999999999988877666666654432 233 3347799999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
++|+|+++..++.....|+..+.......++|+++|+||+|+.+.. ..++..+.... .+++++++||++|.|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-----YGIPFIETSAKTRQGVE 171 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----HTCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-----cCCeEEEEeCCCCCCHH
Confidence 9999999998988888887776554444579999999999987532 22222222111 12369999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
+++++|.+.+.+.
T Consensus 172 ~l~~~l~~~~~~~ 184 (190)
T 3con_A 172 DAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-32 Score=180.73 Aligned_cols=163 Identities=22% Similarity=0.341 Sum_probs=121.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeec--CEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
....++|+++|++|+|||||++++.++.+.....+|.+... ..+... .+.+.+||+||++++...+..+++++|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34679999999999999999999998888777677766443 334433 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++|+|++++.++.....|+..+... ...++|+++|+||+|+.+... .++..+.... ....+++++||++|.|+
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQ----ITGMRFCEASAKDNFNV 177 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT----STTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHh----cCCCeEEEEeCCCCCCH
Confidence 9999999998998888776655433 335799999999999976432 2222222211 12457999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030000 170 DAVIDWLIKHSKTA 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
++++++|.+.+.++
T Consensus 178 ~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 178 DEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988653
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-32 Score=179.26 Aligned_cols=160 Identities=21% Similarity=0.352 Sum_probs=126.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.++|+++|++|+|||||+++++++.+.....+|.+.... .+... .+.+.+||+||++++...+..+++++|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 5699999999999999999999998888777777774443 33333 4789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++...... ...++++++||++|.|+++
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-----ELNVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEEEBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 999999888888888887765432 25799999999999975432 222222111 1134799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
++++|.+.+.++
T Consensus 167 l~~~l~~~~~~~ 178 (179)
T 2y8e_A 167 LFRRVAAALPGM 178 (179)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHhhc
Confidence 999999988765
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-31 Score=177.86 Aligned_cols=157 Identities=22% Similarity=0.429 Sum_probs=127.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||+++++++.+.....+|.+.... .+. ...+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 35699999999999999999999999887777777775443 233 34578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HH---HHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQ---ALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .+ .+.+.+ .++++++||++|.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~ 156 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHL--------GFEFFEASAKDNI 156 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH--------TCEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHC--------CCeEEEEECCCCC
Confidence 9999999989988888877765432 35799999999999976432 22 222222 2379999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
|+++++++|.+.+.+
T Consensus 157 gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 157 NVKQTFERLVDVICE 171 (203)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987754
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=6.5e-32 Score=180.10 Aligned_cols=158 Identities=23% Similarity=0.421 Sum_probs=128.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+|+|++|+|||||++++.++.+.....+|.+.... . +....+.+.+||+||++.+...+..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 35699999999999999999999998887776666663333 2 3446789999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HH---HHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQ---ALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|++++.++..+..|+..+... ...++|+++|+||+|+.+... .+ .+.+.. .++++++||++|.
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL--------GFDFFEASAKENI 171 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 999999999999888887777553 335899999999999865432 22 222222 2469999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030000 168 NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~~ 183 (184)
|++++|+++.+.+.++
T Consensus 172 gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 172 SVRQAFERLVDAICDK 187 (191)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988653
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.4e-32 Score=180.10 Aligned_cols=164 Identities=18% Similarity=0.181 Sum_probs=120.8
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc--ceeEEEE--eecCEEEEEEEcCCccchhH-hHHhhccCCC
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKV--TKGNVTIKLWDLGGQRRFRT-MWERYCRGVS 89 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~--~~~~~~~--~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~ 89 (184)
.....+||+++|++|||||||++++.+........++. ......+ +...+.+.+||++|++.+.. .+..+++++|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 34467999999999999999999997544332222322 2233333 34457889999999988765 6777889999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|+|++++.++..+..|+..+.......++|+++|+||+|+.+.. ..++..+... ....+++++||++|.
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAALHH 173 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEEEBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH-----HhCCEEEEEcCCCCC
Confidence 999999999999999999998887655444579999999999997532 2222222111 112479999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030000 168 NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~~ 183 (184)
|++++|+++.+.+...
T Consensus 174 ~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 174 NTRELFEGAVRQIRLR 189 (195)
T ss_dssp SHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988764
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-32 Score=180.11 Aligned_cols=156 Identities=17% Similarity=0.246 Sum_probs=116.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.+||+++|++|+|||||++++.++.+.. +.+|.+..+. .+. ...+.+.+||+||+++ ..+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 467999999999999999999999988876 6667664432 233 3447789999999987 356788999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHh--cCCCCCCCcEEEEEeCCCccc----ccCHHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 94 VVDAADRDSVPIARSELHELL--MKPSLSGIPLLVLGNKIDKSE----ALSKQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~iivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
|+|++++.++.....|+..+. ......++|+++|+||+|+.+ ....++..+.... ...++++++||++|.
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD----MKRCSYYETXATYGL 154 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH----HSSEEEEEEBTTTTB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh----hcCCeEEEEeccccC
Confidence 999999999999988654332 222235799999999999842 1122222221110 113579999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
|++++|+++.+.+.+
T Consensus 155 ~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVT 169 (178)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.5e-32 Score=180.19 Aligned_cols=160 Identities=24% Similarity=0.398 Sum_probs=98.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+..+. .+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45799999999999999999999988877666677774443 344444 88999999999999988889999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++..+... ..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLAL-----DYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-----HHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999999998888887765432 25799999999999975322 222222111 113479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.7e-32 Score=179.49 Aligned_cols=160 Identities=21% Similarity=0.301 Sum_probs=123.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||++++.++.+.....+|.+... ..+.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 4579999999999999999999999888776666666333 33443 3478999999999999998999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999989988888877775432 35799999999999975322 222222111 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|++|.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (191)
T 2a5j_A 173 EAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-31 Score=178.57 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=123.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------CCCccceeEEE-----EeecCEEEEEEEcCCccchhH
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED-----------MIPTVGFNMRK-----VTKGNVTIKLWDLGGQRRFRT 79 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~-----------~~~t~~~~~~~-----~~~~~~~~~~~d~~g~~~~~~ 79 (184)
....+||+++|++|+|||||++.+.+ .+... ..+|.+..+.. ++...+.+.+||+||++++..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 35679999999999999999976654 44333 23455544432 234567899999999999999
Q ss_pred hHHhhccCCCEEEEEEeCC------CCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCC
Q 030000 80 MWERYCRGVSAILYVVDAA------DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITD 153 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 153 (184)
.+..+++++|++++|+|++ +..++..+..|+..+ .....++|+++|+||+|+.+....++..+.....
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~---- 163 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE---- 163 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT----
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccccCHHHHHHHHHhc----
Confidence 9999999999999999998 445666666666655 2234689999999999998776666666655432
Q ss_pred Cce-eEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 154 REV-CCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 154 ~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.+ +++++||++|+|++++|+++.+.+.+
T Consensus 164 -~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 164 -GKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp -CCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred -CCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 33 79999999999999999999998765
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6e-32 Score=179.72 Aligned_cols=158 Identities=24% Similarity=0.327 Sum_probs=122.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.+||+++|++|+|||||+++++++.+...+.+|.+..+.. +....+.+.+||+||++++... ..+++++|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 3467999999999999999999999998887888888755432 3344578999999999988765 56889999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC--CCCCcEEEEEeCCCcccccC--HH---HHHHHhCCCccCCCceeEEEeee-c
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALS--KQ---ALVDQLGLESITDREVCCYMISC-K 164 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa-~ 164 (184)
+|+|++++.++.....|+..+..... ..++|+++|+||+|+..... .+ ++.+.+ +++++++|| +
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~e~Sa~~ 168 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF--------GCLFFEVSACL 168 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH--------TCEEEECCSSS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc--------CCcEEEEeecC
Confidence 99999999999999888877754321 24799999999999965322 22 222222 247999999 8
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+|.|++++|+++.+.+.+
T Consensus 169 ~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 169 DFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CSHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHhh
Confidence 999999999999998865
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-32 Score=179.01 Aligned_cols=163 Identities=26% Similarity=0.462 Sum_probs=115.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEee---cCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+... ..+.. ....+.+||+||++++...+..+++++|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 4679999999999999999999999888777777766333 33433 357899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCcEEEEEeCCCccccc---CHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEAL---SKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++|+|++++.++.....|+..+.... ...++|+++|+||+|+.... ..++..+... .....+++++||++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~ 161 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAKN 161 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecCC
Confidence 99999999988888888877665432 23679999999999995432 2222222211 02345799999999
Q ss_pred CCCHHHHHHHHHHHhhhc
Q 030000 166 SINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~~ 183 (184)
|.|++++++++.+.+.++
T Consensus 162 ~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 162 AINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999887653
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=179.59 Aligned_cols=160 Identities=27% Similarity=0.398 Sum_probs=127.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+|+|++|+|||||++++.++.+...+.+|.+..+. .+.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45799999999999999999999999988777777764443 3333 3478999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999999999888877765433 35799999999999976332 222222111 123469999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|+++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-31 Score=177.13 Aligned_cols=158 Identities=21% Similarity=0.375 Sum_probs=126.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EeecC-------------------------------
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN------------------------------- 63 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~~~~------------------------------- 63 (184)
++.++|+|+|++|+|||||++++++..+...+.+|.+..... +...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 457999999999999999999999998887777887744432 33222
Q ss_pred --------EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 64 --------VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 64 --------~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
..+.+||+||++++...+..+++++|++++|+|++++.++.....|+..+.... +.|+++|+||+|...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCccc
Confidence 789999999999999999999999999999999999989988888887776542 399999999999422
Q ss_pred -ccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 136 -ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 136 -~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
....++..+.... ..++++++||++|.|+++++++|.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 162 FQVDILEVQKYAQD-----NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CCSCHHHHHHHHHH-----TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2223333333221 23479999999999999999999988764
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-32 Score=181.85 Aligned_cols=162 Identities=25% Similarity=0.416 Sum_probs=127.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+|+|++|+|||||++++.+..+...+.+|.+..... +. ...+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 467999999999999999999999998887777777654433 33 33478999999999999988889999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|++++.++.....|+..+..... ..+.|+++|+||+|+.... ..++..+... .....+++++||++|.|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~g 161 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAIN 161 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCCC
Confidence 99999999888888888776654322 2478999999999997432 2222222211 02345799999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
+++++++|.+.+.+
T Consensus 162 i~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 162 VEQAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=178.02 Aligned_cols=165 Identities=20% Similarity=0.251 Sum_probs=123.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+.... . +....+.+.+||+||++++...+..+++++|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 35799999999999999999999988887777777764433 2 33445778899999999999999999999999999
Q ss_pred EEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc---------cCCCc-eeEEEee
Q 030000 94 VVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------ITDRE-VCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~S 162 (184)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+..+...... ....+ .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999988888887 4555554332 3799999999999965422111111100000 00112 3799999
Q ss_pred eccCCCHHHHHHHHHHHhhhc
Q 030000 163 CKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~~ 183 (184)
|++|.|++++++++.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999988653
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=179.33 Aligned_cols=165 Identities=18% Similarity=0.236 Sum_probs=119.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...+||+++|++|+|||||++++.++.+...+.+|.+.... .+.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 45789999999999999999999998887777677664442 2333 34789999999999999989999999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc----------CCCceeEEEee
Q 030000 94 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----------TDREVCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~S 162 (184)
|+|++++.++... ..|+..+... .+++|+++|+||+|+.+.....+....+..... .....+++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 9999998888888 4455444332 247999999999999764322222221111100 01112799999
Q ss_pred eccCCCHHHHHHHHHHHhhhc
Q 030000 163 CKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~~ 183 (184)
|++|.|+++++++|.+.+.+.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987654
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=177.88 Aligned_cols=159 Identities=21% Similarity=0.267 Sum_probs=124.7
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEee--cCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
..++.++|+++|++|+|||||++++.++.+...+.+|.+..+. .+.. ..+.+.+||+||++++...+..+++++|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 3346799999999999999999999999887777777765442 3333 348899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccC--------------HHH---HHHHhCCCccCC
Q 030000 92 LYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------KQA---LVDQLGLESITD 153 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~~~---~~~~~~~~~~~~ 153 (184)
++|+|++++.++.... .|+..+... ..++|+++|+||+|+.+... .++ +.+.++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------ 165 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG------ 165 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC------
Confidence 9999999998898887 565555443 24799999999999965321 111 111111
Q ss_pred CceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 154 REVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..+++++||++|+|++++++++.+.+..
T Consensus 166 -~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 166 -ACCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp -CSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred -CcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 1269999999999999999999988753
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=181.37 Aligned_cols=165 Identities=22% Similarity=0.284 Sum_probs=105.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+..+. .+. ...+.+.+||+||++++...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 46799999999999999999999988887766677664432 233 345689999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC---------ccCCCc-eeEEEee
Q 030000 94 VVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE---------SITDRE-VCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~S 162 (184)
|+|++++.++.... .|+..+... ..++|+++|+||+|+.......+..+..... .....+ .+++++|
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 99999998998886 555555332 2479999999999997643221111110000 000112 3799999
Q ss_pred eccCCCHHHHHHHHHHHhhhc
Q 030000 163 CKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~~ 183 (184)
|++|.|++++|++|.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=178.86 Aligned_cols=160 Identities=23% Similarity=0.331 Sum_probs=118.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.+||+|+|++|+|||||+++++++.+...+.+|.+... ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998888777777766433 3344443 78999999999999888899999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++..+..|+..+..... .++|+++|+||+|+..... ..+..+... ...++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 99999999999888888777654322 5799999999999965332 222222211 123579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|+++.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-32 Score=178.97 Aligned_cols=158 Identities=22% Similarity=0.341 Sum_probs=111.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.+||+++|++|+|||||++++..+.+...+.+|.+..+. .+....+.+.+||+||++++...+..+++++|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 356799999999999999999999988887776677653332 13445677889999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccC------------H---HHHHHHhCCCccCCCce
Q 030000 93 YVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALS------------K---QALVDQLGLESITDREV 156 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~------------~---~~~~~~~~~~~~~~~~~ 156 (184)
+|+|++++.++.... .|+..+.... .++|+++|+||+|+.+... . .++.+.++ ..
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~ 155 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG-------AP 155 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT-------CS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC-------CC
Confidence 999999998998887 4555554332 3799999999999865322 1 11222221 13
Q ss_pred eEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 157 CCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 157 ~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+++++||++|+|++++++++.+.+.+
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 156 AYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 69999999999999999999988753
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=179.56 Aligned_cols=162 Identities=19% Similarity=0.285 Sum_probs=125.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...++|+++|++|+|||||++++.++.+...+.+|.+..+.. .....+.+.+||+||++++...+..+++++|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 467999999999999999999999988877777777755433 22345789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|++++.++.....++..+..... ..++|+++|+||+|+.+... .++...... ...++++++||++|.|+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-----EWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Confidence 9999998888887777655543211 24789999999999975322 222211111 1124799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+++++.+.+..+
T Consensus 161 l~~~l~~~~~~~ 172 (199)
T 2gf0_A 161 LFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHCSSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987654
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-31 Score=179.17 Aligned_cols=159 Identities=26% Similarity=0.424 Sum_probs=124.7
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSA 90 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (184)
.....++|+|+|++|+|||||++++++..+.....+|.+... ..+...+ +.+.+||+||++++...+..+++++|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 345679999999999999999999999888777777766443 3444444 789999999999999889999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-H---HHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-K---QALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+++|+|++++.++.....|+..+.... ..++|+++|+||+|+..... . .++.+.+ .++++++||++|
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~ 166 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKEL--------GIPFIESSAKND 166 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHH--------TCCEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHHHc--------CCEEEEEeCCCC
Confidence 999999999888888888877665432 24789999999999943222 2 2222222 236999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|+++++++|.+.+.+
T Consensus 167 ~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 167 DNVNEIFFTLAKLIQE 182 (213)
T ss_dssp BSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=180.66 Aligned_cols=158 Identities=23% Similarity=0.327 Sum_probs=123.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+..+. . +....+.+.+||+||++++...+..+++++|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 46799999999999999999999999887777777774443 2 33445789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCccccc----------CHHH---HHHHhCCCccCCCceeEE
Q 030000 94 VVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEAL----------SKQA---LVDQLGLESITDREVCCY 159 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----------~~~~---~~~~~~~~~~~~~~~~~~ 159 (184)
|+|++++.++.... .|+..+.... +++|+++|+||+|+.+.. ..++ +.+.++ ..+++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~ 157 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG-------AAAYI 157 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT-------CSEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC-------CceEE
Confidence 99999999998886 5665554332 479999999999986532 1211 222222 13699
Q ss_pred EeeeccCCCHHHHHHHHHHHhhhc
Q 030000 160 MISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 160 ~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
++||++|+|++++|+++.+.+.+.
T Consensus 158 ~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 158 ECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred EccCCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999887643
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-31 Score=176.04 Aligned_cols=157 Identities=17% Similarity=0.272 Sum_probs=123.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...+||+++|++|+|||||++++.++.+...+.+|.+..+.. +....+.+.+||+||++++...+..+++++|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 457999999999999999999999998887777777755432 23445889999999999999989999999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCcccc--------------cCHH---HHHHHhCCCccCCCc
Q 030000 94 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEA--------------LSKQ---ALVDQLGLESITDRE 155 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~---~~~~~~~~~~~~~~~ 155 (184)
|+|++++.++... ..|...+... .++.|+++|+||+|+.+. ...+ ++.+.++ .
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 155 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------A 155 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC-------C
Confidence 9999999898887 5565555332 247999999999999742 1111 1222221 2
Q ss_pred eeEEEeeec-cCCCHHHHHHHHHHHhhh
Q 030000 156 VCCYMISCK-DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 156 ~~~~~~Sa~-~~~~i~~l~~~i~~~~~~ 182 (184)
.+++++||+ +|.|++++|+++.+.+.+
T Consensus 156 ~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 156 ATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp SEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred cEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 479999999 689999999999988764
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=178.50 Aligned_cols=159 Identities=22% Similarity=0.278 Sum_probs=116.1
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEeec--CEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...+.++|+++|++|+|||||++++.++.+...+.+|.+..+. .+... .+.+.+||+||++++...+..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 3456899999999999999999999988887777777764443 23333 46788999999999999889999999999
Q ss_pred EEEEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCccccc--------------CH---HHHHHHhCCCccCC
Q 030000 92 LYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEAL--------------SK---QALVDQLGLESITD 153 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--------------~~---~~~~~~~~~~~~~~ 153 (184)
++|+|++++.++.... .|+..+.... .++|+++|+||+|+.+.. .. ..+.+.++
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------ 167 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK------ 167 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC------
Confidence 9999999999998886 5665554432 379999999999997531 11 11111111
Q ss_pred CceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 154 REVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..+++++||++|.|++++|+++.+.+.+
T Consensus 168 -~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 168 -AASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp -CSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -CcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 1379999999999999999999988764
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-31 Score=178.61 Aligned_cols=161 Identities=22% Similarity=0.336 Sum_probs=121.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+|+|++|+|||||++++.++.+...+.+|.+... ..+...+ +.+.+||+||++++...+..+++++|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 4579999999999999999999999988777777766433 3344444 78999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+..... .++..+... ...++++++||++|.|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ-----ENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999999999888887775443 35789999999999976322 222222211 123579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
++|+++.+.+.++
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=180.59 Aligned_cols=161 Identities=17% Similarity=0.201 Sum_probs=93.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccc--eeEEEEeec----CEEEEEEEcCCccchhHhHHhhccCC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG--GYSEDMIPTVG--FNMRKVTKG----NVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~t~~--~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
...++|+++|++|+|||||++++.++ .+...+.+|.+ .....+... .+.+.+||+||++++...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999999988 67666777776 333444444 67899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCC--CCCCcEEEEEeCCCccc-cc--CHHHHHHHhCCCccCCCceeEEEeee
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSE-AL--SKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
|++++|+|++++.++.....|+..+..... ..++|+++|+||+|+.+ .. ..++..+.... .+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT-----NTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH-----TTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH-----cCCEEEEecc
Confidence 999999999999999999988887765433 25799999999999976 22 22222222211 1257999999
Q ss_pred cc-CCCHHHHHHHHHHHhhh
Q 030000 164 KD-SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~-~~~i~~l~~~i~~~~~~ 182 (184)
++ |.|+++++++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987754
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-32 Score=183.92 Aligned_cols=162 Identities=22% Similarity=0.286 Sum_probs=126.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEee-----cCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-----GNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...+||+++|.+|+|||||+++++++.+...+.+|.+........ ..+.+.+||+||++.+...+..++.++|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 467999999999999999999999888877777777755544332 127899999999999998899999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.... .+....+. ....++++++||++|.|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVL----KGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHT----TTCCCEEEEEBTTTTBTTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH----HHcCCcEEEEecCCCCCHH
Confidence 99999999999888888777664432 246899999999999764221 22222221 1234579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
++++++.+.+...
T Consensus 164 ~l~~~l~~~~~~~ 176 (218)
T 4djt_A 164 LPFLHLARIFTGR 176 (218)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988654
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=177.14 Aligned_cols=163 Identities=24% Similarity=0.309 Sum_probs=115.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeec---CEEEEEEEcCCccchhH-hHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG---NVTIKLWDLGGQRRFRT-MWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||+++++++.+...+.++ +.....+... .+.+.+|||||++++.. .+..+++++|+++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 46799999999999999999999988877665543 3444445544 68899999999999988 7888899999999
Q ss_pred EEEeCCCCC-CHHHHHHHHHHHhcC--CCCCCCcEEEEEeCCCcccccCHHHHHHHhC----------------------
Q 030000 93 YVVDAADRD-SVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSKQALVDQLG---------------------- 147 (184)
Q Consensus 93 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~---------------------- 147 (184)
+|+|+++.. ++.....++...+.. ....++|+++|+||+|+......+...+.+.
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999998732 244444444444322 2235799999999999987655433332221
Q ss_pred -CCccC-----------CCceeEEEeeeccC------CCHHHHHHHHHHHh
Q 030000 148 -LESIT-----------DREVCCYMISCKDS------INIDAVIDWLIKHS 180 (184)
Q Consensus 148 -~~~~~-----------~~~~~~~~~Sa~~~------~~i~~l~~~i~~~~ 180 (184)
..... ...+++++|||++| .||+++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 00000 01678999999999 99999999998753
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-31 Score=177.29 Aligned_cols=157 Identities=17% Similarity=0.266 Sum_probs=123.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-E--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-V--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...+||+++|++|+|||||++++.++.+...+.+|.+..+.. + +...+.+.+||+||++++...+..+++++|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 457999999999999999999999998887777777755432 2 3445889999999999999988999999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCccccc--------------CHH---HHHHHhCCCccCCCc
Q 030000 94 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEAL--------------SKQ---ALVDQLGLESITDRE 155 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--------------~~~---~~~~~~~~~~~~~~~ 155 (184)
|+|++++.++... ..|+..+... ..+.|+++|+||+|+.+.. ..+ ++.+.++ .
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 176 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------A 176 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-------C
Confidence 9999999898888 5665555433 2479999999999996421 111 1222221 2
Q ss_pred eeEEEeeec-cCCCHHHHHHHHHHHhhh
Q 030000 156 VCCYMISCK-DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 156 ~~~~~~Sa~-~~~~i~~l~~~i~~~~~~ 182 (184)
.+++++||+ +|.|++++|+++.+.+.+
T Consensus 177 ~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 177 ATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 479999999 689999999999988764
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-31 Score=176.64 Aligned_cols=163 Identities=19% Similarity=0.255 Sum_probs=122.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...+||+++|++|+|||||++++.++.+...+.+|.+..+ ..+. ...+.+.+||+||++++...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 4579999999999999999999999888777777776444 2233 344789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc---------cCCCc-eeEEEee
Q 030000 94 VVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------ITDRE-VCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~S 162 (184)
|+|++++.++.... .|...+... ..++|+++|+||+|+.+.....+......... ..... .+++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999998888884 454444332 24799999999999976422211111110000 00012 2799999
Q ss_pred eccCCCHHHHHHHHHHHhh
Q 030000 163 CKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~ 181 (184)
|++|.|+++++++|.+.+.
T Consensus 181 A~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-30 Score=168.33 Aligned_cols=163 Identities=20% Similarity=0.310 Sum_probs=122.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc--ceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.++.++|+++|++|+|||||++++.++.+.....++. ......+...+..+.+||+||++++...+..++..+|++++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 4578999999999999999999999888776554433 34445567778899999999999998888888999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc-cCC---CceeEEEeeeccCCCH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES-ITD---REVCCYMISCKDSINI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~Sa~~~~~i 169 (184)
|+|++++....... .+.... ..++|+++|+||+|+... ..++..+.+.... ... ...+++++||++|.|+
T Consensus 85 v~d~~~~~~~~~~~-~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 85 VVAADDGVMPQTVE-AINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp EEETTCCCCHHHHH-HHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred EEECCCCCcHHHHH-HHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 99998865444333 222222 247899999999999763 3333433332211 111 2368999999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 030000 170 DAVIDWLIKHSKTAK 184 (184)
Q Consensus 170 ~~l~~~i~~~~~~~~ 184 (184)
++++++|.+.+...+
T Consensus 159 ~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 159 DHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhc
Confidence 999999999887653
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=175.94 Aligned_cols=164 Identities=18% Similarity=0.301 Sum_probs=115.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccceeEEEEe-------ecCEEEEEEEcCCccchhHhHHhhccCCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG--GYSEDMIPTVGFNMRKVT-------KGNVTIKLWDLGGQRRFRTMWERYCRGVS 89 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~t~~~~~~~~~-------~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 89 (184)
.+||+++|++|||||||++++.+. .+...+.+|.+....... ...+.+.+||++|++++...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999974 444556677776654432 24678999999999999988888899999
Q ss_pred EEEEEEeCCCC-CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH----HHHHHhCCCccCCCceeEEEeeec
Q 030000 90 AILYVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+.+..... +..+.+..........+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 47888888887765432 478999999999996543221 112222211101111248999999
Q ss_pred cCC-CHHHHHHHHHHHhhhcC
Q 030000 165 DSI-NIDAVIDWLIKHSKTAK 184 (184)
Q Consensus 165 ~~~-~i~~l~~~i~~~~~~~~ 184 (184)
+|. +++++++.|.+.+.+.+
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC-
T ss_pred cCchhHHHHHHHHHHHHhccc
Confidence 996 99999999998887643
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=182.85 Aligned_cols=161 Identities=22% Similarity=0.400 Sum_probs=127.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
....+||+++|.+|+|||||+++++.+.+...+.+|.+..... +....+.+.+||+||++.+...+..+++++|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 3467999999999999999999988777666666676644443 334568899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
++|+|++++.++.....|+..+.... .++|+++|+||+|+.+.....+.. .......++++++||++|.|+++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGC-----CHHHHHTCEEEECBGGGTBTTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHH-----HHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999888888776543 479999999999997643221111 11112245799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+|+++.+.+...
T Consensus 165 l~~~l~~~l~~~ 176 (221)
T 3gj0_A 165 PFLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999987653
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-30 Score=172.32 Aligned_cols=160 Identities=20% Similarity=0.190 Sum_probs=115.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCcccee--EEEEe--ecCEEEEEEEcCCccc-hhHhHHhhccCCC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFN--MRKVT--KGNVTIKLWDLGGQRR-FRTMWERYCRGVS 89 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~--~~~~~--~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~ 89 (184)
...+||+++|++|+|||||++++.+... ...+ ++.+.. ...+. ...+.+.+||++|++. +......+++.++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 3569999999999999999999986433 3222 233322 23333 3446788999999887 4555666788999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|||++++.+|.....|+..+.......++|+++|+||+|+.+... .++.. .+. ....++++++||++|+
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~-~~a----~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-ACA----VVFDCKFIETSAAVQH 188 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-HHH----HHHTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH-HHH----HHcCCEEEEEeCCCCC
Confidence 9999999999999999988877765443345799999999999965322 22111 110 0112479999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
||+++|+++.+.+..
T Consensus 189 ~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 189 NVKELFEGIVRQVRL 203 (211)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998754
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-32 Score=180.63 Aligned_cols=158 Identities=28% Similarity=0.461 Sum_probs=118.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||++++.++.+.....++.+ .....+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 3569999999999999999999998887766656555 3334444444 78999999999999998999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-----CHHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ....+.+.+ .++++++||++|.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNAT 181 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT--------TCCBCCCCC---H
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 999999999999998888777544 33579999999999986532 223333332 3468999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030000 168 NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~~ 183 (184)
|++++|++|.+.+.++
T Consensus 182 gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887654
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=167.19 Aligned_cols=162 Identities=20% Similarity=0.179 Sum_probs=109.5
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecCEEEEEEEcCC----------ccchhHhH
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGG----------QRRFRTMW 81 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g----------~~~~~~~~ 81 (184)
.+..+.++|+++|++|+|||||++++++..+.....++.+... ..... +..+.+||||| ++.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 3445689999999999999999999998775444444333211 11222 23689999999 77777777
Q ss_pred HhhccCC---CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeE
Q 030000 82 ERYCRGV---SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCC 158 (184)
Q Consensus 82 ~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
..+++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+.+........+.+..........++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 7777766 9999999999887776543 2222222 578999999999997765443322222111111245689
Q ss_pred EEeeeccCCCHHHHHHHHHHHhh
Q 030000 159 YMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 159 ~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
+++||++|.|++++++++.+.++
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998875
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-30 Score=172.68 Aligned_cols=162 Identities=20% Similarity=0.303 Sum_probs=110.2
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee----EEEEe-ecCEEEEEEEcCCccchhHhH---Hhhcc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN----MRKVT-KGNVTIKLWDLGGQRRFRTMW---ERYCR 86 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~----~~~~~-~~~~~~~~~d~~g~~~~~~~~---~~~~~ 86 (184)
+.++.+||+++|++|+|||||++++.+. +......+.+.. ...+. ...+.+.+||+||++++.... ..+++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 4557899999999999999999988754 332222211211 11222 456899999999999987766 88999
Q ss_pred CCCEEEEEEeCCCC--CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH----HHH----HHHhCCCccCCCce
Q 030000 87 GVSAILYVVDAADR--DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QAL----VDQLGLESITDREV 156 (184)
Q Consensus 87 ~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~----~~~~~~~~~~~~~~ 156 (184)
++|++++|+|+++. +++.....|+..... ...++|+++|+||+|+.+.... ..+ .+.+.........+
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 99999999999987 344444444444422 2358999999999998653211 111 11111111124467
Q ss_pred eEEEeeeccCCCHHHHHHHHHHHh
Q 030000 157 CCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 157 ~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
+++++||++ .||+++|+.+.+.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 899999999 99999999998865
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=171.98 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=112.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEeecCEEEEEEEcCCc------cch---hHhHHhhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQ------RRF---RTMWERYC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~------~~~---~~~~~~~~ 85 (184)
.+.++|+|+|++|+|||||++++++..+.... ..|.......+......+.+|||||+ ++. ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 46799999999999999999999987764222 23445555566667899999999998 431 12234457
Q ss_pred cCCCEEEEEEeCCCCCCHHHH--HHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH----HHHHhCCCccCCCceeEE
Q 030000 86 RGVSAILYVVDAADRDSVPIA--RSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA----LVDQLGLESITDREVCCY 159 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 159 (184)
..+|++++|+|++++.++... ..++..+... ..++|+++|+||+|+.+...... ..+.+.. ......+++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 182 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD--NVKNPIKFS 182 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH--HCCSCEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH--hcCCCceEE
Confidence 888999999999998887522 2344444322 24799999999999976433211 1111110 011226799
Q ss_pred EeeeccCCCHHHHHHHHHHHhhhc
Q 030000 160 MISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 160 ~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
++||++|+|+++++++|.+.+.+.
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987653
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=158.44 Aligned_cols=149 Identities=23% Similarity=0.261 Sum_probs=109.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccchh------HhHHhhcc--C
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR------TMWERYCR--G 87 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~--~ 87 (184)
+.++|+++|++|+|||||++++.+..+.....+ |.......+...+..+.+|||||++++. .....+++ +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 358999999999999999999998765444334 3344445566678899999999988764 33345554 8
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc----CHHHHHHHhCCCccCCCceeEEEeee
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++++++|+|+++ +.....|+..+.. .++|+++|+||+|+.... ..+++.+.++ .+++++||
T Consensus 82 ~~~~i~v~D~~~---~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTC---HHHHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred CCEEEEEecCCc---hhHhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEc
Confidence 999999999976 3444455555543 378999999999986532 2344444443 36999999
Q ss_pred ccCCCHHHHHHHHHHHhh
Q 030000 164 KDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~ 181 (184)
++|+|++++|+++.+.++
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998764
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-32 Score=181.30 Aligned_cols=164 Identities=21% Similarity=0.268 Sum_probs=121.7
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
..++.++|+++|++|+|||||++++.++.+...+.+|.+.... .+....+.+.+||+||++++...+..+++++|++
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 4457899999999999999999999988877666666653332 2344567788999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHH---------HHhCCCccCCCce-eEEE
Q 030000 92 LYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV---------DQLGLESITDREV-CCYM 160 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~ 160 (184)
++|+|++++.++.... .|+..+... . .++|+++|+||+|+.+.....+.. ...........+. ++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~-~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
Confidence 9999999999998886 444444322 2 379999999999997543211110 0001111112233 7899
Q ss_pred eeeccCCCHHHHHHHHHHHh
Q 030000 161 ISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~ 180 (184)
+||++|.|+++++++|.+.+
T Consensus 184 vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999999998764
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=166.46 Aligned_cols=160 Identities=20% Similarity=0.192 Sum_probs=112.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCcccee--EEEEe--ecCEEEEEEEcCCccc-hhHhHHhhccCCC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG--YSEDMIPTVGFN--MRKVT--KGNVTIKLWDLGGQRR-FRTMWERYCRGVS 89 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~t~~~~--~~~~~--~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~ 89 (184)
...+||+++|++|+|||||++++.+.. +...+ ++.+.. ...+. ...+.+.+||++|++. +......+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999998533 33222 233322 23333 3446778999999876 4445566788899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|||+++..++.....|+..+.......++|+++|+||+|+...... ++. ..+. ....++++++||++|.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~a----~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAXA----VVFDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHHH----HHTTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHHH----HHhCCceEEeccccCC
Confidence 99999999999999999888776654333457999999999998653221 111 1110 0112469999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
||+++|+++.+.+..
T Consensus 158 ~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 158 NVKELFEGIVRQVRL 172 (192)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987743
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=158.66 Aligned_cols=149 Identities=18% Similarity=0.215 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccc-------hhHhHHhhccCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR-------FRTMWERYCRGVS 89 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~~~ 89 (184)
+||+++|++|+|||||++++.+..+. .....+.......+...+..+.+||+||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999987643 1222344455556777788999999999887 4556677889999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCce-eEEEeeeccCCC
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREV-CCYMISCKDSIN 168 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 168 (184)
++++|+|+++..+.. ..++..++.. .+.|+++|+||+|+.+... +..+ +. ..+. +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~--~~~~-~~-----~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHEL--YLGP-LY-----GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGGG--GCGG-GG-----GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccchH--hHHH-HH-----hCCCCCeEEEecccCCC
Confidence 999999998865543 2334444333 4789999999999976421 1111 11 1122 689999999999
Q ss_pred HHHHHHHHHHHhh
Q 030000 169 IDAVIDWLIKHSK 181 (184)
Q Consensus 169 i~~l~~~i~~~~~ 181 (184)
++++++++.+.++
T Consensus 149 v~~l~~~l~~~l~ 161 (161)
T 2dyk_A 149 LEELLEAIWERLP 161 (161)
T ss_dssp HHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhCc
Confidence 9999999998763
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=160.89 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=110.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchhHh--------HHhhcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM--------WERYCR 86 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~~ 86 (184)
+..+|+++|++|+|||||++++.+..+. .....|.+.....+...+..+.+|||||++++... ...+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 4689999999999999999999976542 12233444555667777788999999998653211 123578
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++|++++|+|++++.++.. ..|+..+... ...++|+++|+||+|+.+... ........+++++||++|
T Consensus 83 ~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSARTG 150 (172)
T ss_dssp TCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTTC
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCCC
Confidence 9999999999999888763 3454444332 235799999999999854211 011123457999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|+++++++|.+.+..
T Consensus 151 ~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 151 EGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999999987654
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=177.48 Aligned_cols=158 Identities=20% Similarity=0.273 Sum_probs=113.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEeecCEEEEEEEcCCccchhH---hHHhhccCCCEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT---MWERYCRGVSAILYV 94 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~~~~~~~~~~~~i~v 94 (184)
||+++|+.|+|||||++++.++-++. ...+|.+.....+. ..+++++|||+||++|.. ....++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999887654432 25688887777663 458899999999999974 468899999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcC--CCCCCCcEEEEEeCCCcccccCH----HHHHHHhCCCccC----CCceeEEEeeec
Q 030000 95 VDAADRDSVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSK----QALVDQLGLESIT----DREVCCYMISCK 164 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~Sa~ 164 (184)
+|++++ .+ ....++..++.. ...+++|+++++||+|+.+.... +++....+..... ..++++++|||+
T Consensus 80 ~Ditd~-~~-~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE-YI-NAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC-TT-HHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch-HH-HHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 33 333444333221 11357999999999999764321 2222222111111 246889999999
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+ .+|.++|..+.+.+..
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5899999999887654
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=163.34 Aligned_cols=162 Identities=18% Similarity=0.164 Sum_probs=110.8
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEeecCEEEEEEEcCC----------ccchhHhHHh
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGG----------QRRFRTMWER 83 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~~g----------~~~~~~~~~~ 83 (184)
+....++|+++|++|+|||||++++++.... ...++.+.... .....+..+.+||+|| ++.+...+..
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 3456789999999999999999999987733 22233321111 1122244688999999 6667777777
Q ss_pred hccCC---CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEE
Q 030000 84 YCRGV---SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 84 ~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+++.+ +++++|+|+++..+..... +...+.. .++|+++|+||+|+.+....+...+...........+++++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 76655 9999999998765544332 2222222 27899999999999765554444333322111223457999
Q ss_pred eeeccCCCHHHHHHHHHHHhhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+||++|.|++++++++.+.+.+
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999998865
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=168.07 Aligned_cols=161 Identities=18% Similarity=0.218 Sum_probs=114.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCC-----------ccchhHhHHhhccC-
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QRRFRTMWERYCRG- 87 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~~~~- 87 (184)
++|+++|++|+|||||++++.+..+...+.++.......+... .+.+||+|| ++.+...+..++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999888766666555444444444 689999999 67777777777776
Q ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHH--------HhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCce
Q 030000 88 VSAILYVVDAADRDSVPIA-RSELHE--------LLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREV 156 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (184)
++++++|+++.+..++... ..|... +.......++|+++|+||+|+.... ..+++.+.++.. ......
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhh-hhccCC
Confidence 6666666666666677665 333221 1111112579999999999997643 234444445431 111124
Q ss_pred eEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 157 CCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 157 ~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
+++++||++|+|++++++++.+.+.+.
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 689999999999999999999988764
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=172.68 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=120.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEee-cCEEEEEEEcCCccch-----hHhHHhhccCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRF-----RTMWERYCRGV 88 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~-----~~~~~~~~~~~ 88 (184)
..+||+++|++|+|||||+++++++... ..+.+|.+.....+.. +++.+.+||+||++++ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 4689999999999999999999877332 3567888888877664 5799999999999988 66788889999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCcccccCHH-------HHHHHhCCCccCCCceeEEE
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEALSKQ-------ALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 160 (184)
|++++|+|++++.++..+..|...+... ...+++|+++|+||+|+......+ +..+.+.. .......++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~-~~g~~~~~~~~ 160 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSS-EFGFPNLIGFP 160 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH-TTTCCSCEEEE
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHH-HcCCCCeEEEE
Confidence 9999999999999999887664433221 113579999999999997632222 11111110 01111368999
Q ss_pred eeeccCCCHHHHHHHHHHHh
Q 030000 161 ISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~ 180 (184)
+||++ .++.++|..+...+
T Consensus 161 tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTT
T ss_pred eeecC-ChHHHHHHHHHHHH
Confidence 99999 88999998887754
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=176.23 Aligned_cols=166 Identities=19% Similarity=0.237 Sum_probs=123.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-Eee--cCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+..++|+++|.+|+|||||++++.++.+...+.+|.+..... +.. ..+.+.+||+||++.+...+..+++++|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3567999999999999999999999988877777777644432 333 3466779999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc---------cCCCc-eeEEEe
Q 030000 93 YVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------ITDRE-VCCYMI 161 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~ 161 (184)
+|+|++++.++.... .|...+.... .++|+++|+||+|+.+.....+......... ....+ .+++++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 999999998888876 4444443322 3799999999999865321111111110000 00112 379999
Q ss_pred eeccCCCHHHHHHHHHHHhhhc
Q 030000 162 SCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
||++|.|++++++++.+.+.+.
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999887653
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-29 Score=172.43 Aligned_cols=161 Identities=12% Similarity=0.133 Sum_probs=114.1
Q ss_pred cceeEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCCcc-ceeEE--E----------------EeecCEE
Q 030000 17 KQEMELSLIGLQ---------NAGKTSLVNTIAT---GGYSEDMIPTV-GFNMR--K----------------VTKGNVT 65 (184)
Q Consensus 17 ~~~~~i~v~G~~---------~~GKstli~~~~~---~~~~~~~~~t~-~~~~~--~----------------~~~~~~~ 65 (184)
...+||+++|.+ |+|||||++++.+ ..+...+.+|. +..+. . ++...+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 456999999999 9999999999998 55555555553 32111 1 2345688
Q ss_pred EEEEE-----------------------cCCccchhHhHHhhcc---------------------CCCEEEEEEeCCCC-
Q 030000 66 IKLWD-----------------------LGGQRRFRTMWERYCR---------------------GVSAILYVVDAADR- 100 (184)
Q Consensus 66 ~~~~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~- 100 (184)
+.+|| ++|++++...+..+++ ++|++++|+|++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 6666766666666666 79999999999998
Q ss_pred -CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHH
Q 030000 101 -DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
.++..+..|+..+.......++|+++|+||+|+......++..+.... ...++++++||++|.|++++|++|.+.
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----KKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----SSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 999999988887754422357999999999999653322222221111 124579999999999999999999988
Q ss_pred hh
Q 030000 180 SK 181 (184)
Q Consensus 180 ~~ 181 (184)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 75
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=166.86 Aligned_cols=161 Identities=19% Similarity=0.149 Sum_probs=121.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEeec-CEEEEEEEcCCccchh----------HhH
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKG-NVTIKLWDLGGQRRFR----------TMW 81 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~----------~~~ 81 (184)
..+.-.|+++|.+|+|||||+|++++..+.. ....|........... +.++.+|||||+.+.. ...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 4567889999999999999999999887642 2334545555556677 8999999999985433 566
Q ss_pred HhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc-cccCHHHHHHHhCCCccCCCceeEEE
Q 030000 82 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS-EALSKQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
..+++++|++++|+|+++..+......|+..+.. .++|+++|+||+|+. +........+.+... .....++++
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~--~~~~~~i~~ 160 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK--HPELTEIVP 160 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH--CTTCCCEEE
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHh--ccCCCeEEE
Confidence 6778899999999999998888876665555433 478999999999997 444333333333211 112346999
Q ss_pred eeeccCCCHHHHHHHHHHHhhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+||++|.|++++++++.+.++.
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCB
T ss_pred EeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999998764
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-28 Score=164.60 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=111.9
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCC--CCC--CCCccceeEEEEe-ecCEEEEEEEcCCc----------cchh
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGY--SED--MIPTVGFNMRKVT-KGNVTIKLWDLGGQ----------RRFR 78 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~--~~~t~~~~~~~~~-~~~~~~~~~d~~g~----------~~~~ 78 (184)
.+..+.++|+|+|.+|+|||||++++++... ... ...|.......+. ..+..+.+|||||. +.+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 3445679999999999999999999998762 111 2234444444444 45688999999994 4445
Q ss_pred HhHHhhccC---CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc----
Q 030000 79 TMWERYCRG---VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI---- 151 (184)
Q Consensus 79 ~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~---- 151 (184)
.....+++. +|++++|+|+.+..+. ....+...+.. .++|+++|+||+|+.+........+.+.....
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~--~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTE--LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCH--HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 555566555 7889999999875443 22333333333 57899999999999765443222222111100
Q ss_pred --CCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 152 --TDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 152 --~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.....+++++||++|.|+++++++|.+.+..
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 1245689999999999999999999998765
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-27 Score=165.34 Aligned_cols=156 Identities=19% Similarity=0.184 Sum_probs=114.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC-C--CCCccceeEEEEeecCEEEEEEEcCCccc--------hhHhHHhhcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE-D--MIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYCR 86 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 86 (184)
+..+|+++|.+|+|||||+|++++..+.. . ...|.......+...+.++.+|||||..+ +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 45689999999999999999999887642 2 22333333344567789999999999776 4556667889
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++|++++|+|++++.+.. ..++...+.... .++|+++|+||+|+.+... ..+..+.+ ....+++++||++
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSALD 156 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTTC
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCCC
Confidence 999999999998875543 445444444321 4799999999999975433 33333333 1234689999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
|.|++++++++.+.++.
T Consensus 157 g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 157 ERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999987643
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-27 Score=155.32 Aligned_cols=151 Identities=23% Similarity=0.257 Sum_probs=114.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccchh------HhHHhhcc--C
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR------TMWERYCR--G 87 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~--~ 87 (184)
+.++|+++|++|+|||||++++.+..+.....+ |.......+...+..+.+|||||++.+. .....++. .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 568999999999999999999997665433333 3344555677778999999999988764 34455553 5
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc----CHHHHHHHhCCCccCCCceeEEEeee
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++++++|+|.++ +.....|+..+.. .+.|+++|+||+|+.... ..+++.+.++ .+++++||
T Consensus 86 ~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa 150 (188)
T 2wjg_A 86 PDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA 150 (188)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred CCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEEEe
Confidence 999999999864 5566666665543 478999999999986532 3344444443 36999999
Q ss_pred ccCCCHHHHHHHHHHHhhhc
Q 030000 164 KDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~~ 183 (184)
++|.|++++++++.+.+...
T Consensus 151 ~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 151 AKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGTBSHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999987653
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=155.56 Aligned_cols=160 Identities=22% Similarity=0.341 Sum_probs=120.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+++|++|||||||++++.+..+...+.+|.+... ..+... .+.+.+||++|++++...+..+++++++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 3468999999999999999999999888777777766433 334443 467889999999998888888889999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|+.+..++.....|+..+... ...+.|+++++||+|+..... ..+..... ....+.++++|++++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999888887777776655332 224789999999999965322 22221111 1123468999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=159.49 Aligned_cols=150 Identities=20% Similarity=0.230 Sum_probs=113.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEeecCEEEEEEEcCCccchhH------hHHhhc--c
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT------MWERYC--R 86 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~ 86 (184)
.+.++|+++|++|||||||++++.+..+.... +.|.......+...+..+.+||+||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999999987754333 3355555556777789999999999877653 223444 5
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc----CHHHHHHHhCCCccCCCceeEEEee
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
++|++++|+|+++.++ ...++..+.. .++|+++|+||+|+.... +.+++.+.++ ++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~---~~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQ---SLYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHH---HHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred CCCEEEEEeCCCchhh---HHHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence 8999999999987543 3334444443 379999999999986532 3455555554 3699999
Q ss_pred eccCCCHHHHHHHHHHHhh
Q 030000 163 CKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~ 181 (184)
|++|.|++++++++.+.++
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998765
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=174.66 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=114.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCc----------cchhHhHH-h
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ----------RRFRTMWE-R 83 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~----------~~~~~~~~-~ 83 (184)
..++|+++|++|+|||||+|++++.... ...+.|.+.....+...+..+.+|||||+ +.+..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 4589999999999999999999987652 22334555555667778888999999997 44544433 4
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEe
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++++|++++|+|++++.+++.. .++..+.. .++|+++|+||+|+.+... .++..+.+..........+++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 78889999999999998888765 34444432 4799999999999976543 22333332221122235689999
Q ss_pred eeccCCCHHHHHHHHHHHhhh
Q 030000 162 SCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887764
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=161.84 Aligned_cols=136 Identities=20% Similarity=0.302 Sum_probs=108.7
Q ss_pred CCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC----------CCCCHHHHHHHHHHHhcCC
Q 030000 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 117 (184)
..+|.|+....+...++.+.+||++|+++++..|..++++++++|+|+|++ +..++.....++..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 557888888888999999999999999999999999999999999999654 6777888888888887766
Q ss_pred CCCCCcEEEEEeCCCcccc------------------cCHHHHHHHh-----CCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 118 SLSGIPLLVLGNKIDKSEA------------------LSKQALVDQL-----GLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 118 ~~~~~~iivv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
...++|+++++||+|+.+. .+.++..+.+ .......+.+.+++|||+++.||+++|+
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 6678999999999998652 2333322221 1112234567789999999999999999
Q ss_pred HHHHHhhhc
Q 030000 175 WLIKHSKTA 183 (184)
Q Consensus 175 ~i~~~~~~~ 183 (184)
.+.+.+.++
T Consensus 311 ~v~~~Il~~ 319 (327)
T 3ohm_A 311 AVKDTILQL 319 (327)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999988754
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=176.23 Aligned_cols=156 Identities=22% Similarity=0.313 Sum_probs=108.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE------------eecCEEEEEEEcCCccchhHhHHhh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV------------TKGNVTIKLWDLGGQRRFRTMWERY 84 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~------------~~~~~~~~~~d~~g~~~~~~~~~~~ 84 (184)
.+.+||+++|.+|||||||++++.++.+.....+|.+...... +...+.+.+||+||++.+......+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 3579999999999999999999999988877888888766643 1235899999999999999999999
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEee
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
++++|++++|+|+++. .....|+..+.... .+.|+++|+||+|+..... .++..+.... ...+++++|
T Consensus 119 l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~vS 188 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPA-----IENRFHRIS 188 (535)
T ss_dssp HHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG-----GTTCEEECC
T ss_pred ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHh-----cCCceEEEe
Confidence 9999999999999765 44555655554432 3689999999999976433 3333333221 234699999
Q ss_pred eccCCCHHHHHHHHHHHhhh
Q 030000 163 CKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~ 182 (184)
|++|.|++++++++.+.+.+
T Consensus 189 A~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp C-----CTTHHHHHHHHHTC
T ss_pred cCcccCHHHHHHHHHHHHhc
Confidence 99999999999999998765
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-27 Score=163.24 Aligned_cols=150 Identities=24% Similarity=0.264 Sum_probs=111.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEeecCEEEEEEEcCCccchhH----------hHHhh-
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRRFRT----------MWERY- 84 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~~~~- 84 (184)
+.++|+++|++|||||||+|++.+..+..... .|.......+...+..+.+|||||+..+.. ....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 46899999999999999999999877543333 344555566777788999999999877652 22223
Q ss_pred -ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc----CHHHHHHHhCCCccCCCceeEE
Q 030000 85 -CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCY 159 (184)
Q Consensus 85 -~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+++|++++|+|+++.++. ..+...+.. .++|+++|+||+|+.+.. ..+.+.+.++ ++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHH---HHHHHHHHH----HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEE
T ss_pred hhcCCCEEEEEecCCChHHH---HHHHHHHHh----cCCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEE
Confidence 3789999999999874333 333333322 279999999999987643 3445555554 3699
Q ss_pred EeeeccCCCHHHHHHHHHHHhhh
Q 030000 160 MISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 160 ~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
++||++|.|++++++++.+.+..
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999887653
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=158.46 Aligned_cols=148 Identities=28% Similarity=0.304 Sum_probs=108.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccchh------HhHHhhcc--C
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR------TMWERYCR--G 87 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~--~ 87 (184)
..++|+++|++|||||||++++.+........+ |.......+.. +..+.+||+||+..+. .....++. +
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357999999999999999999998764333333 44344444444 6789999999988765 34455554 6
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc----CHHHHHHHhCCCccCCCceeEEEeee
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|++++|+|+++. .....+...+.. .++|+++++||+|+.... +.+.+.+.++ ++++++||
T Consensus 81 ~d~vi~V~D~t~~---e~~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNL---ERNLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBT
T ss_pred CCEEEEEecCCch---HhHHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEc
Confidence 9999999999864 333444444433 479999999999986532 3445555553 36999999
Q ss_pred ccCCCHHHHHHHHHHHhh
Q 030000 164 KDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~ 181 (184)
++|.|++++++++.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=160.77 Aligned_cols=145 Identities=25% Similarity=0.284 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccchhH----------hHHhhc--
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRT----------MWERYC-- 85 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~~~~~-- 85 (184)
.+|+++|++|||||||+|++.+........+ |.......+...+..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 4899999999999999999998765433333 44455666777888999999999877653 344556
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc----CHHHHHHHhCCCccCCCceeEEEe
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMI 161 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++|++++|+|+++.++. ..+...+ .. .++|+++|+||+|+.+.. ..+.+.+.++ ++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~---~~l~~~l-~~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERH---LYLTSQL-FE---LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHH---HHHHHHH-TT---SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred CCCCEEEEEeeCCCchhH---HHHHHHH-HH---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence 889999999999874322 2222222 22 379999999999987643 3445555553 369999
Q ss_pred eeccCCCHHHHHHHHHHH
Q 030000 162 SCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~ 179 (184)
||++|.|++++++++.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999876
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-26 Score=151.39 Aligned_cols=157 Identities=22% Similarity=0.347 Sum_probs=119.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..++|+++|++|||||||++++.+..+...+.+|.+... ..+...+ +.+.+||++|++++...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 468999999999999999999999888877778777544 3344443 566789999999988888888899999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|..+..++..+..|+..+... ...+.|+++++||+|+..... ........ ....+.++++|++++.|+++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999887777777666554322 224789999999999965322 22211111 11234689999999999999
Q ss_pred HHHHHHHHh
Q 030000 172 VIDWLIKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++++.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=164.99 Aligned_cols=135 Identities=20% Similarity=0.299 Sum_probs=107.0
Q ss_pred CCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC----------CCCHHHHHHHHHHHhcCCC
Q 030000 49 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD----------RDSVPIARSELHELLMKPS 118 (184)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 118 (184)
.+|.|+....+...++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 457777777788889999999999999999999999999999999999998 4568888888888877655
Q ss_pred CCCCcEEEEEeCCCcccc-----------------cCHHHHHHHhC-----CCcc-CCCceeEEEeeeccCCCHHHHHHH
Q 030000 119 LSGIPLLVLGNKIDKSEA-----------------LSKQALVDQLG-----LESI-TDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 119 ~~~~~iivv~nK~D~~~~-----------------~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
..++|+++++||+|+.+. .+.++..+.+. .... ....+.+++|||++|.||.++|++
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 568999999999998532 22333322221 1111 135678999999999999999999
Q ss_pred HHHHhhhc
Q 030000 176 LIKHSKTA 183 (184)
Q Consensus 176 i~~~~~~~ 183 (184)
+.+.+.+.
T Consensus 338 v~~~i~~~ 345 (353)
T 1cip_A 338 VTDVIIKN 345 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-26 Score=168.29 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=98.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHH--------hhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE--------RYC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~--------~~~ 85 (184)
++.++|+++|.+|+|||||+|++.+.... .....|.......+...++.+.+|||||+.++...+. .++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 45799999999999999999999977531 2223455555566778889999999999887654432 357
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH--HHHHhCCCccCCCceeEEEeee
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA--LVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++|++++|+|++++.++.....+.. ++... .++|+++|+||+|+.+...... +.+. ...+++++||
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~-~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~--------~~~~~i~vSA 379 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRE-LKAAH--PAAKFLTVANKLDRAANADALIRAIADG--------TGTEVIGISA 379 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHH-HHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH--------HTSCEEECBT
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHH-HHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc--------CCCceEEEEE
Confidence 88999999999999988854322222 22222 2799999999999976543321 2211 0136999999
Q ss_pred ccCCCHHHHHHHHHHHhh
Q 030000 164 KDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~ 181 (184)
++|+|+++++++|.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998876
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=163.41 Aligned_cols=164 Identities=21% Similarity=0.193 Sum_probs=115.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC---ccce-------------------eEEEEeecCEEEEEEEcCC
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP---TVGF-------------------NMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~---t~~~-------------------~~~~~~~~~~~~~~~d~~g 73 (184)
.++.++|+++|++++|||||++++.+......... +.+. ...........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 35679999999999999999999986543321100 0000 0000011227899999999
Q ss_pred ccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhC--CCcc
Q 030000 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG--LESI 151 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~--~~~~ 151 (184)
++++...+...+..+|++++|+|+++..++.....++...... ...|+++++||+|+.+.....+..+.+. ....
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999887677676666544322 2358999999999976543322222221 1112
Q ss_pred CCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 152 TDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.....+++++||++|+|+++++++|.+.++.
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 2345689999999999999999999987653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=169.74 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=113.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCC----------ccchhHhHH-
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QRRFRTMWE- 82 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g----------~~~~~~~~~- 82 (184)
...++|+++|.+|+|||||++++++... ....+.|.......+...+..+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 3569999999999999999999996652 12223344455566777888999999999 677766544
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEE
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
.+++.+|++++|+|+++..... ..++...+.. .++|+++|+||+|+.+... .++..+.+..........++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~~~--~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIEQ--DKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCHH--HHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcCHH--HHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 4788999999999998754433 3333333332 4799999999999976432 2333333322211223468999
Q ss_pred eeeccCCCHHHHHHHHHHHhhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+||++|.|++++++++.+.+.+
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987754
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-25 Score=159.36 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=117.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecCEEEEEEEcCCccchh---------HhHHhhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR---------TMWERYC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~ 85 (184)
...++|+++|.+|+|||||++++.+...... ...|.+.....+......+.+|||||..... .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 4678999999999999999999997764322 2345566666666778899999999975421 1222345
Q ss_pred cCCCEEEEEEeCCCCC--CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 86 RGVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
..+|++++|+|+++.. ++.....++..+..... +.|+++|+||+|+......++..+... ....+++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEEeC
Confidence 5799999999998877 67777777776654322 799999999999976443333322221 12346899999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++|+|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=154.73 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=113.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccchhH------hHHhhc--cCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRT------MWERYC--RGV 88 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~~~ 88 (184)
.++|+++|++|||||||++++.+..+.....+ |.......+...+..+.+||+||+..+.. ....++ .++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNA 82 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCC
Confidence 57999999999999999999998776444444 44455556777888999999999887654 444555 689
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc----cCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA----LSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
|++++|+|+++. .....++..+... ..+|+++++||+|+.+. .....+.+.++ ++++++||+
T Consensus 83 d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~Sa~ 148 (271)
T 3k53_A 83 DVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTNAK 148 (271)
T ss_dssp SEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECBGG
T ss_pred cEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEEeC
Confidence 999999999864 3344444444443 23999999999998653 23455555554 369999999
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+|.|++++++++.+.+..
T Consensus 149 ~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 149 KGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GTBTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988754
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-26 Score=160.53 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=106.2
Q ss_pred CCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC----------CCCCHHHHHHHHHHHhcCC
Q 030000 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 117 (184)
..+|.|+....+...++.+.+||++|+++++..|..++++++++|+|+|++ +..++.....++..+....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 345778888888888999999999999999999999999999999999998 6788888888998888776
Q ss_pred CCCCCcEEEEEeCCCccccc-----------------CHHHHH----HHh-------CCCccCC-----------CceeE
Q 030000 118 SLSGIPLLVLGNKIDKSEAL-----------------SKQALV----DQL-------GLESITD-----------REVCC 158 (184)
Q Consensus 118 ~~~~~~iivv~nK~D~~~~~-----------------~~~~~~----~~~-------~~~~~~~-----------~~~~~ 158 (184)
...++|+++++||+|+.... +.++.. +.+ ....... +.+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 66789999999999986421 112211 111 1111111 45788
Q ss_pred EEeeeccCCCHHHHHHHHHHHhhh
Q 030000 159 YMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 159 ~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+++||+++.||+.+|+.+.+.+.+
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999988753
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=159.92 Aligned_cols=133 Identities=21% Similarity=0.300 Sum_probs=97.5
Q ss_pred CccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC----------CCCHHHHHHHHHHHhcCCCC
Q 030000 50 PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD----------RDSVPIARSELHELLMKPSL 119 (184)
Q Consensus 50 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 119 (184)
+|.|+....+...++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.+....
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 35566666677788999999999999999999999999999999999998 66899889999888876555
Q ss_pred CCCcEEEEEeCCCcccc------------------cCHHHHHHHh-----CCCccC-CCceeEEEeeeccCCCHHHHHHH
Q 030000 120 SGIPLLVLGNKIDKSEA------------------LSKQALVDQL-----GLESIT-DREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 120 ~~~~iivv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
.++|+++++||+|+.+. .+.++..+.+ .+.... .+.+.+++|||++|.||+++|++
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 68999999999998632 2333333322 111111 34567899999999999999999
Q ss_pred HHHHhhh
Q 030000 176 LIKHSKT 182 (184)
Q Consensus 176 i~~~~~~ 182 (184)
+.+.+.+
T Consensus 347 v~~~i~~ 353 (362)
T 1zcb_A 347 VKDTILH 353 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-25 Score=163.36 Aligned_cols=151 Identities=17% Similarity=0.253 Sum_probs=114.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCcc-chh--------HhHHhhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR-RFR--------TMWERYC 85 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~-~~~--------~~~~~~~ 85 (184)
..++|+++|.+|+|||||+|++.+.+. ......|.+.....+...+..+.+|||||+. ++. .....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 458999999999999999999998753 2233346666667777888999999999987 543 2234578
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+++|++++|+|++++.++.... .+ ..+ .++|+++|+||+|+.+....++..+... ...+++++||++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAkt 388 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALK 388 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGG
T ss_pred hcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCC
Confidence 8999999999999988876543 22 222 3689999999999976544444443322 124689999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030000 166 SINIDAVIDWLIKHSK 181 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~ 181 (184)
|+|+++++++|.+.+.
T Consensus 389 g~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 389 GEGLEKLEESIYRETQ 404 (482)
T ss_dssp TCCHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998754
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=161.44 Aligned_cols=158 Identities=19% Similarity=0.222 Sum_probs=116.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEeecC-EEEEEEEcCCccc----hhHhHH---hhccCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRR----FRTMWE---RYCRGVS 89 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~----~~~~~~---~~~~~~~ 89 (184)
.+|+++|.+++|||||++++.+..+. .....|.......+...+ ..+.+||+||..+ +..+.. ..+++++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 46899999999999999999977643 222346666666666654 7899999999643 222323 3355699
Q ss_pred EEEEEEeCCC---CCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeec
Q 030000 90 AILYVVDAAD---RDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|+|+++ ..++.....+...+..... ..++|+++|+||+|+....+ .+++.+.+.. ..+++++||+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~ 312 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAV 312 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECC
Confidence 9999999998 7788888877777765432 35799999999999965431 2333333321 1468999999
Q ss_pred cCCCHHHHHHHHHHHhhhc
Q 030000 165 DSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~~ 183 (184)
+++|+++++++|.+.+.+.
T Consensus 313 tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 313 TREGLRELLFEVANQLENT 331 (342)
T ss_dssp CSSTTHHHHHHHHHHHTSC
T ss_pred CCcCHHHHHHHHHHHHhhC
Confidence 9999999999999988754
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=159.44 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=104.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCC--ccceeEEEEee-----------------------cCEEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG---YSEDMIP--TVGFNMRKVTK-----------------------GNVTIKL 68 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~---~~~~~~~--t~~~~~~~~~~-----------------------~~~~~~~ 68 (184)
+..++|+++|+.++|||||+++|.+.. +..+..+ |.+..+..... ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 457999999999999999999998432 2222222 55433322111 1278999
Q ss_pred EEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC----HHHHHH
Q 030000 69 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS----KQALVD 144 (184)
Q Consensus 69 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~ 144 (184)
||+||+++|...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+.+... .+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999988888888999999999998764233333333322211 2358999999999976443 233333
Q ss_pred HhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 145 QLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.+.. ......+++++||++|+|+++++++|.+.++.
T Consensus 163 ~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 163 FVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHTT--STTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 3321 12345689999999999999999999987653
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.9e-27 Score=158.01 Aligned_cols=118 Identities=23% Similarity=0.333 Sum_probs=94.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccC----C
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRG----V 88 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~----~ 88 (184)
..+.++|+++|++|+|||||++++.+..+.. ...++.+..+ ....+.+||+||++.+...+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 4567999999999999999999999877654 2333333222 56779999999999998888888877 8
Q ss_pred CEEEEEEeCC-CCCCHHHHHHHHHHHhcCC---CCCCCcEEEEEeCCCcccccC
Q 030000 89 SAILYVVDAA-DRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 89 ~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~~ 138 (184)
+++++|+|++ ++.++.....++..++... ...++|+++|+||+|+.....
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 9999999999 8899999988888776532 235799999999999977554
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=161.22 Aligned_cols=152 Identities=20% Similarity=0.233 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccc---------hhHhHHhhccC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR---------FRTMWERYCRG 87 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~~ 87 (184)
.+|+++|.+|+|||||+|++++.+.. ...+.|.+..+..+...+..+.+|||||.+. +......+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999987642 2233455566777888889999999999664 34556778999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHH-HHHhCCCccCCCceeEEEeeeccC
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQAL-VDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+|++++|+|+.++.+... .++..++.. .++|+++|+||+|+.... .... .+... .. ..+++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~---lg--~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS---LG--FGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG---GS--SCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh---cC--CCCEEEEeccCC
Confidence 999999999987655433 334444332 368999999999985431 1111 11111 11 114789999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|++++++++.+.++.
T Consensus 151 ~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 151 INLDTMLETIIKKLEE 166 (439)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccc
Confidence 9999999999988763
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=160.90 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=107.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh------------HH
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM------------WE 82 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------------~~ 82 (184)
..++|+++|++|||||||+|++++... ....+.|.......+...+..+.+|||||..+.... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 358999999999999999999997764 222334444555667777888999999997543322 12
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEE
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
.+++.+|++++|+|+++..+.... .+...+.. .++|+++++||+|+.+... .++..+.+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 356779999999999887766542 22333222 4799999999999975432 3333332221111223457999
Q ss_pred eeeccCCCHHHHHHHHHHHhhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+||++|.|++++++.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=160.05 Aligned_cols=162 Identities=17% Similarity=0.177 Sum_probs=111.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC---CCCCC--CCccceeEEEEee-----------------------cCEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGG---YSEDM--IPTVGFNMRKVTK-----------------------GNVTIK 67 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~---~~~~~--~~t~~~~~~~~~~-----------------------~~~~~~ 67 (184)
.+..++|+++|+.++|||||+++|.+.. +..+. ..|.+..+..... ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3567999999999999999999998432 22222 2255443332221 027899
Q ss_pred EEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH----HHHH
Q 030000 68 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALV 143 (184)
Q Consensus 68 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~~ 143 (184)
+||+||+++|...+...+..+|++++|+|+++..........+..+... ...|+++++||+|+.+.... +++.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999999888888888999999999998764222333333222111 23589999999999764322 2223
Q ss_pred HHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 144 DQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+.+.. ......+++++||++|+|+++++++|.+.++.
T Consensus 164 ~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 164 EFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 33321 12245689999999999999999999987653
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=162.98 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=111.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC-------CCC--CCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG-------YSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~-------~~~--~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
+.++|+++|++++|||||+++|.+.. ... ....|.+..+..+...+..+.+|||||+++|...+...+..+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 57999999999999999999999766 111 223455655666777889999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC--cc-CCCceeEEEeeecc
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE--SI-TDREVCCYMISCKD 165 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~Sa~~ 165 (184)
|++++|+|+++....+.. ..+..+ .. .++|+++++||+|+.+....++..+.+... .. .....+++++||++
T Consensus 98 D~~ilVvda~~g~~~qt~-e~l~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 98 DLALIVVDAKEGPKTQTG-EHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp CEEEEEEETTTCSCHHHH-HHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred CEEEEEEecCCCccHHHH-HHHHHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcC
Confidence 999999999875433322 222222 22 368889999999997643332222222110 01 11256899999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030000 166 SINIDAVIDWLIKHSK 181 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~ 181 (184)
|+|+++++++|.+.++
T Consensus 173 g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 173 GFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhc
Confidence 9999999999998764
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=161.88 Aligned_cols=152 Identities=19% Similarity=0.235 Sum_probs=102.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHh--------hc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER--------YC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~--------~~ 85 (184)
++.++|+++|++|+|||||+|++++.... .....|.......+...+..+.+|||||..++...+.. ++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 35789999999999999999999975432 22233444555566778899999999998765443332 57
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+.+|++++|+|++++.+... ..++..+ ...|+++|+||+|+....... . .... ....+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~--~~~~-~~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----S--LEYP-ENITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----T--CCCC-TTCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----H--HHHh-ccCCcEEEEECCC
Confidence 78999999999998776654 3333333 237999999999997643322 1 1111 1345799999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
|.|+++++++|.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998754
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=164.82 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=108.9
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCE-EEEEEEcCCccchhHh-------HHh
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNV-TIKLWDLGGQRRFRTM-------WER 83 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~-------~~~ 83 (184)
+....++|+++|+.|+|||||++++++..+. .....|.......++..+. .+.+|||||+.++... ...
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 3446799999999999999999999987753 2233455566666665554 8999999998766433 455
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++.++|++++|+|+. .......|+..+... ++|+++|+||+|+...... +..+.+.. ....+++++||
T Consensus 110 ~l~~aD~vllVvD~~---~~~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~~----~~g~~v~~vSA 177 (423)
T 3qq5_A 110 VFYRADCGILVTDSA---PTPYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYES----RYEAKVLLVSA 177 (423)
T ss_dssp HHTSCSEEEEECSSS---CCHHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSSC----CTTCCCCCCSS
T ss_pred HHhcCCEEEEEEeCC---ChHHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHHH----HcCCCEEEEEC
Confidence 788999999999982 223344555544433 7999999999999876554 33333321 22357999999
Q ss_pred ccCCCHHHHHHHHHHHhh
Q 030000 164 KDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~ 181 (184)
++|.|+++++++|.+.++
T Consensus 178 ktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CCTTSTTTHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhhh
Confidence 999999999999999884
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-25 Score=163.51 Aligned_cols=151 Identities=21% Similarity=0.255 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCcc--------chhHhHHhhccCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR--------RFRTMWERYCRGV 88 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~~ 88 (184)
.+|+++|.+|+|||||+|++.+.... ...+.|.+..+..++..+..+.+|||||++ .+...+..+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999976653 222334455566667777889999999985 5666777889999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+.++.+.. ..++...+.. .++|+++|+||+|+.+... . . .........+++++||++|.|
T Consensus 84 d~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~----~-~~~~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA--N----I-YDFYSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp SEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------C----C-CSSGGGSSCCCEECBTTTTBT
T ss_pred CEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh--h----H-HHHHHcCCCCeEEEeCcCCCC
Confidence 9999999998876654 3455555543 5789999999999865321 0 0 001111111589999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
+.++++++.+.++.
T Consensus 152 v~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 152 LGDLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHHHTGGG
T ss_pred hHHHHHHHHHhcCc
Confidence 99999999988763
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=160.34 Aligned_cols=159 Identities=17% Similarity=0.191 Sum_probs=111.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CCCC---------------CCCCccceeEEEEee-----cCEEEEEEEcCCc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG--GYSE---------------DMIPTVGFNMRKVTK-----GNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~---------------~~~~t~~~~~~~~~~-----~~~~~~~~d~~g~ 74 (184)
++..+|+++|+.++|||||+++++.. .... ..+.|.......+.+ ..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45689999999999999999999852 1110 011222222223322 2488999999999
Q ss_pred cchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCC
Q 030000 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDR 154 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
.+|...+...++.+|++++|+|+++....+....|.... . .++|+++++||+|+.... .++..+.+... ....
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCCC
Confidence 999999999999999999999999988887776665543 2 478999999999997643 32222222111 1112
Q ss_pred ceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 155 EVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..+++++||++|.|+++++++|.+.++.
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 2358999999999999999999998764
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-24 Score=160.24 Aligned_cols=115 Identities=21% Similarity=0.224 Sum_probs=90.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC-----------------CCC-------CCCCccceeEEEEeecCEEEEEEEcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG-----------------YSE-------DMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~-----------------~~~-------~~~~t~~~~~~~~~~~~~~~~~~d~~ 72 (184)
.+..+|+++|++|+|||||+++|+... ... ....|.......+.+.++.+++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 456899999999999999999996110 000 12335556666788889999999999
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
|+.++......+++.+|++++|+|+++.........| ..... .++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCccc
Confidence 9999999999999999999999999987777665443 33322 47899999999999653
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-24 Score=161.30 Aligned_cols=155 Identities=18% Similarity=0.208 Sum_probs=108.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------CCCCccceeEEEEee-----cCEEEEEEEcCCcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG--YSE---------------DMIPTVGFNMRKVTK-----GNVTIKLWDLGGQR 75 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~---------------~~~~t~~~~~~~~~~-----~~~~~~~~d~~g~~ 75 (184)
+..+|+++|+.++|||||+++++... ... ..+.|.......+.+ ..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46789999999999999999998521 110 111222222233333 24889999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCccC
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESIT 152 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~ 152 (184)
+|...+...++.+|++++|+|+++..+.+....|.... . .++|+++++||+|+..... .+++.+.++..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID--- 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC---
Confidence 99999999999999999999999988887776665544 2 3789999999999976432 13333333321
Q ss_pred CCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 153 DREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..+++++||++|.|++++++++.+.++.
T Consensus 155 --~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 155 --ATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp --CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred --cceEEEeecccCCCchhHHHHHhhcCCC
Confidence 1248999999999999999999998764
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-24 Score=150.32 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=107.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCcc-chh--------HhHHhhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR-RFR--------TMWERYC 85 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~-~~~--------~~~~~~~ 85 (184)
+..+|+++|++|+|||||+|++++.... .....|.......+...+.++.+|||||+. ... .....++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 4568999999999999999999987653 122234333344466778999999999987 322 2223457
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc-ccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+.+|++++|+|+++ +.....++...+.. .+.|+++++||+|+.. .....+..+.+... .....++++||+
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~---~~~~~~i~iSA~ 157 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQ---MNFLDIVPISAE 157 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTT---SCCSEEEECCTT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHh---cCcCceEEEECC
Confidence 78999999999976 33344455444443 4789999999999875 22222222222111 111268999999
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+|.|++++++.+.+.++.
T Consensus 158 ~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTTTHHHHHHHHHTTCCB
T ss_pred CCCCHHHHHHHHHHhCCc
Confidence 999999999999987653
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-24 Score=154.84 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=112.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
+|+++|++++|||||+++|+ ....|.+.....++..+..+++|||||+++|.......++.+|++++|+| ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~- 94 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ- 94 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-
Confidence 89999999999999999998 45566777777788888899999999999998888888999999999999 54
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcE-EEEEe-CCCcccccCHH----HHHHHhCCCccCCCceeEEE--eeecc---CCCH
Q 030000 101 DSVPIARSELHELLMKPSLSGIPL-LVLGN-KIDKSEALSKQ----ALVDQLGLESITDREVCCYM--ISCKD---SINI 169 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~i-ivv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~i 169 (184)
........++..... .++|. ++++| |+|+ +....+ ++.+.+.. .....+++++ +||++ |+|+
T Consensus 95 g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~--~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 95 GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSG--TVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT--STTTTCEEEECCCCTTSSSTTTTH
T ss_pred CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh--cCCCceEEEecccccccCcCCCCH
Confidence 445555555444332 35777 88899 9999 433222 22222221 1223568999 99999 9999
Q ss_pred HHHHHHHHHHhh
Q 030000 170 DAVIDWLIKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
+++++.|.+.++
T Consensus 168 ~~L~~~l~~~~~ 179 (370)
T 2elf_A 168 DELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999988765
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-24 Score=157.08 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=107.5
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCCCCCccceeEEEEee
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGY---------------------------------SEDMIPTVGFNMRKVTK 61 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~---------------------------------~~~~~~t~~~~~~~~~~ 61 (184)
..+..++|+++|++++|||||+++|+...- ....+.|.......++.
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 345679999999999999999999964311 01123466666667888
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCH------HHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcc
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV------PIARSELHELLMKPSLSGIP-LLVLGNKIDKS 134 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 134 (184)
.+..+.+|||||+++|...+...+..+|++++|+|+++.... ......+.... . .++| +++++||+|+.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-~---~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-T---AGVKHLIVLINKMDDP 168 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-H---cCCCeEEEEeecCCCc
Confidence 889999999999999999999999999999999999875321 12222222221 1 3566 99999999985
Q ss_pred ccc----CHHHHHH----HhCCCccC-CCceeEEEeeeccCCCHHHHHH
Q 030000 135 EAL----SKQALVD----QLGLESIT-DREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 135 ~~~----~~~~~~~----~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
... ..++..+ .+...... ...++++++||++|+|+.++.+
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 421 1112112 11111111 1256899999999999998554
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-24 Score=156.49 Aligned_cols=160 Identities=15% Similarity=0.089 Sum_probs=112.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC-------CCCC-----------CCCCccceeEEEEeecCEEEEEEEcCCccchhH
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG-------GYSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 79 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~-------~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 79 (184)
++++|+++|++++|||||+++|++. .+.. ....|.+.....++..+..+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 5789999999999999999999863 1110 122344444455666778999999999999998
Q ss_pred hHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccC-H----HHHHHHhCCCccCC
Q 030000 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALS-K----QALVDQLGLESITD 153 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-~----~~~~~~~~~~~~~~ 153 (184)
.+...+..+|++++|+|+++....+.... +..+.. .++| +++++||+|+.+... . ++..+.+.......
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREH-LLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHH-HHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88899999999999999988765544333 332222 3678 689999999974211 1 12222221111222
Q ss_pred CceeEEEeeeccCCC----------HHHHHHHHHHHhhh
Q 030000 154 REVCCYMISCKDSIN----------IDAVIDWLIKHSKT 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~----------i~~l~~~i~~~~~~ 182 (184)
...+++++||++|.| +.++++.+.+.++.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 346899999999775 89999999887653
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=157.89 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=104.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCCCCCccceeEEEEeec
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGY---------------------------------SEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~---------------------------------~~~~~~t~~~~~~~~~~~ 62 (184)
.+..++|+++|++++|||||+++|+.... ....+.|.......++..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 35789999999999999999999975411 011234566666677888
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHH-----HHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPI-----ARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
+..+.+|||||+++|...+..++..+|++++|+|++++..+.. ...+........ ...|+++|+||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 8999999999999999999999999999999999988644321 222222222221 235699999999997621
Q ss_pred --CHHHHHHHh----CCCccCCCceeEEEeeeccCCCHHH
Q 030000 138 --SKQALVDQL----GLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 138 --~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
..++..+.+ ..........+++++||++|+|+.+
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 112222211 1111122357899999999999874
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=151.77 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=100.7
Q ss_pred ccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC----------CCCHHHHHHHHHHHhcCCCCC
Q 030000 51 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD----------RDSVPIARSELHELLMKPSLS 120 (184)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 120 (184)
|.|+....+...++.+.+||++|+++++..|..++++++++|+|+|+++ ..++.....|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4444445556677899999999999999999999999999999999998 889999999999988765567
Q ss_pred CCcEEEEEeCCCcccccC--------------------------------HHHHHHH----h-CC---CccCCCceeEEE
Q 030000 121 GIPLLVLGNKIDKSEALS--------------------------------KQALVDQ----L-GL---ESITDREVCCYM 160 (184)
Q Consensus 121 ~~~iivv~nK~D~~~~~~--------------------------------~~~~~~~----~-~~---~~~~~~~~~~~~ 160 (184)
++|+++++||+|+..... .++.... + .. .....+.+.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 899999999999853210 1111111 0 00 001123466889
Q ss_pred eeeccCCCHHHHHHHHHHHhhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
|||+++.||+++|+++.+.+.+
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999888764
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=154.19 Aligned_cols=162 Identities=14% Similarity=0.073 Sum_probs=107.0
Q ss_pred HHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCC--------------------------------CCCc
Q 030000 7 ILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGY---SED--------------------------------MIPT 51 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~--------------------------------~~~t 51 (184)
+.+++.....+..++|+++|++++|||||+++|+.... ... .+-|
T Consensus 12 i~~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiT 91 (434)
T 1zun_B 12 ILAYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGIT 91 (434)
T ss_dssp ----CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CC
T ss_pred HHHHHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcE
Confidence 44455555556779999999999999999999985431 000 1123
Q ss_pred cceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 030000 52 VGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 131 (184)
....+..+......+.+|||||+++|...+..++..+|++++|+|+++....+. ..++...... ...|+++|+||+
T Consensus 92 i~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~---~~~~iIvviNK~ 167 (434)
T 1zun_B 92 IDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL---GIKHIVVAINKM 167 (434)
T ss_dssp CCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEEECT
T ss_pred EEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEEcC
Confidence 333445566778899999999999999988899999999999999988754433 3333322221 123699999999
Q ss_pred Cccccc--CHHHHH----HHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 132 DKSEAL--SKQALV----DQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 132 D~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|+.+.. ..++.. +.+..........+++++||++|.|+.++
T Consensus 168 Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 168 DLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 997532 111111 11111111134578999999999999873
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=155.71 Aligned_cols=121 Identities=17% Similarity=0.289 Sum_probs=91.3
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC----------CCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 131 (184)
..+.+.+||++|+++++..|..++++++++|+|+|++ +..++.....|+..+.......++|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4688999999999999999999999999999999998 788899999999888776545689999999999
Q ss_pred CcccccC-----------------------HHHHHHHhCC-----------CccCCCceeEEEeeeccCCCHHHHHHHHH
Q 030000 132 DKSEALS-----------------------KQALVDQLGL-----------ESITDREVCCYMISCKDSINIDAVIDWLI 177 (184)
Q Consensus 132 D~~~~~~-----------------------~~~~~~~~~~-----------~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 177 (184)
|+.+... .++..+.... .....+.+.+++|||++++||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854210 1111111110 00002345678999999999999999999
Q ss_pred HHhhh
Q 030000 178 KHSKT 182 (184)
Q Consensus 178 ~~~~~ 182 (184)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-26 Score=169.37 Aligned_cols=160 Identities=19% Similarity=0.162 Sum_probs=114.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEee-cCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
++.++|+++|++++|||||+++|.+..+.....+ |.......+.. .+..+++|||||++.|...+..+++.+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 3568999999999999999999986654333322 33332333333 34579999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCC-CccCCCceeEEEeeeccCCCHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGL-ESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
|+|+++....+....+ ..... .++|+++++||+|+..... .......... ........+++++||++|.|++
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHHHHHH-HHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 9999987666554433 32322 4789999999999965321 1112222221 1122235689999999999999
Q ss_pred HHHHHHHHHhh
Q 030000 171 AVIDWLIKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++++++...++
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999988764
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-24 Score=155.46 Aligned_cols=161 Identities=18% Similarity=0.144 Sum_probs=113.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC--------CCCC-----------CCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATG--------GYSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~--------~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
.+..++|+++|++++|||||+++|++. .+.. ..+.|.......++..+..+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 356799999999999999999999862 1111 122344455555667788999999999999
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccC-HH----HHHHHhCCCc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALS-KQ----ALVDQLGLES 150 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-~~----~~~~~~~~~~ 150 (184)
|...+...+..+|++++|+|+++....+ ...++..... .++| +++++||+|+.+... .+ +..+.+....
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998876544 3444443332 3678 889999999974211 11 1222221111
Q ss_pred cCCCceeEEEeeeccCCC------------------HHHHHHHHHHHhh
Q 030000 151 ITDREVCCYMISCKDSIN------------------IDAVIDWLIKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~------------------i~~l~~~i~~~~~ 181 (184)
......+++++||++|.| +.++++.+.+.++
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 112346899999999987 8888888887664
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-25 Score=147.62 Aligned_cols=126 Identities=23% Similarity=0.320 Sum_probs=93.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccC----C
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRG----V 88 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~----~ 88 (184)
..+.++|+++|++|||||||++++.+..+.. ...++.+. ......+.+||+||++.+...+..++.+ +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 3567999999999999999999999877643 12222222 2256678999999999887777777665 8
Q ss_pred CEEEEEEeCC-CCCCHHHHHHHHHHHhcCC---CCCCCcEEEEEeCCCcccccCHHHHHHHh
Q 030000 89 SAILYVVDAA-DRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEALSKQALVDQL 146 (184)
Q Consensus 89 ~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~~~~~~~~~~ 146 (184)
|++++|+|++ +..++.....|+..++... ...++|+++|+||+|+.+....++..+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999998 7778888888877775432 22579999999999998877666655554
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-24 Score=147.12 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=104.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC-CCCCCC---CccceeEEEEeecCEEEEEEEcCCccchh-----------Hh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGG-YSEDMI---PTVGFNMRKVTKGNVTIKLWDLGGQRRFR-----------TM 80 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~-~~~~~~---~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~ 80 (184)
..+.++|+|+|++|+|||||++++++.. +..... .|.......+...+..+.+|||||+..+. ..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999999876 343333 34445555677788999999999976542 22
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHH-HHHHHHHHhcCCCCCCCcEEEEEe-CCCcccccCHHH------------HHHHh
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPI-ARSELHELLMKPSLSGIPLLVLGN-KIDKSEALSKQA------------LVDQL 146 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iivv~n-K~D~~~~~~~~~------------~~~~~ 146 (184)
...+++.+|++++|+|+++...... ...++...... ....|.++++| |+|+... .... ..+.+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 3346789999999999985222111 11222222211 11356666666 9999743 3333 22222
Q ss_pred CCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 147 GLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+... ..+..+++||++|.|++++|++|.+.+..
T Consensus 176 ~~~~---~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 176 GGRI---CAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTCE---EECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeE---EEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 2110 00111789999999999999999998865
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=147.22 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=110.0
Q ss_pred hHHHHHHHHhhhh---ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC------CCc----------------------
Q 030000 3 FLDSILNWLRSLF---FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDM------IPT---------------------- 51 (184)
Q Consensus 3 ~~~~~~~~~~~~~---~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~------~~t---------------------- 51 (184)
+++.+.+.++... ....++|+|+|.+|+|||||+|++++..+.+.. .++
T Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~ 86 (299)
T 2aka_B 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 86 (299)
T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCccc
Confidence 4566666666542 235689999999999999999999988763211 121
Q ss_pred ccee-------------------------EEEEee-cCEEEEEEEcCCcc-------------chhHhHHhhccCCCEEE
Q 030000 52 VGFN-------------------------MRKVTK-GNVTIKLWDLGGQR-------------RFRTMWERYCRGVSAIL 92 (184)
Q Consensus 52 ~~~~-------------------------~~~~~~-~~~~~~~~d~~g~~-------------~~~~~~~~~~~~~~~~i 92 (184)
.... ...+.. ....+.+|||||.. .+......+++.++.++
T Consensus 87 tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 166 (299)
T 2aka_B 87 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 166 (299)
T ss_dssp CCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 0000 000111 13679999999963 34556777888888776
Q ss_pred -EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 -YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 -~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|+++..+......++..+ . ..+.|+++|+||+|+.+... ..+..+. ..........+++++||++|.|++
T Consensus 167 l~v~d~~~~~~~~~~~~~~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~ 241 (299)
T 2aka_B 167 LAVSPANSDLANSDALKIAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKK 241 (299)
T ss_dssp EEEEESSSCGGGCHHHHHHHHH-C---TTCSSEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCB
T ss_pred EEEecCCcchhhhHHHHHHHHh-C---CCCCeEEEEEEccccCCCCchHHHHHhC-CcCcCCCCcEEEECCChhhccccc
Confidence 699997654433322333322 2 24789999999999976433 2222211 011111234578999999999999
Q ss_pred HHHHHHHHH
Q 030000 171 AVIDWLIKH 179 (184)
Q Consensus 171 ~l~~~i~~~ 179 (184)
++++++.+.
T Consensus 242 ~l~~~l~~~ 250 (299)
T 2aka_B 242 DITAALAAE 250 (299)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 999998764
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-24 Score=159.09 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=101.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------------------------CCCCccceeEEEEeecC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG--GYSE-------------------------------DMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|++++|||||+++|+.. .+.. ....|.+.....++..+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46799999999999999999999853 2221 23345566666677888
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHH-------HHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIA-------RSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
..+.+|||||+++|...+..++..+|++++|+|+++ .+++.. ...+...... ...|+++++||+|+.+.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCCc
Confidence 999999999999999999999999999999999988 455432 2222212111 22468999999999762
Q ss_pred c----CH----HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 137 L----SK----QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 137 ~----~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
. .. ++..+.+.........++++++||++|+|+.++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 1 11 122222211111122468999999999999743
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=149.95 Aligned_cols=157 Identities=24% Similarity=0.272 Sum_probs=105.1
Q ss_pred eeE-EEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEeecCEEEEEEEcCCcc---------chhHhHHhhcc
Q 030000 19 EME-LSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQR---------RFRTMWERYCR 86 (184)
Q Consensus 19 ~~~-i~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~d~~g~~---------~~~~~~~~~~~ 86 (184)
.++ |+++|.+|+|||||+|++.+..... ...+|.+.....+...+..+.+|||+|.. .+..... .+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence 455 9999999999999999999876532 23456666677777778899999999962 2333333 478
Q ss_pred CCCEEEEEEeCCCCC--CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH--HHH----HHhCCCccCCCceeE
Q 030000 87 GVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ--ALV----DQLGLESITDREVCC 158 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~----~~~~~~~~~~~~~~~ 158 (184)
.+|++++|+|++++. .......+ ..++......+.|+++|+||+|+.+....+ ... ..+. ....++
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~-----~~~~~~ 330 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSS-FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY-----SPIFDV 330 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC-----SCEEEE
T ss_pred hCCEEEEEEECCCCcchHHHHHHHH-HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc-----CCCCcE
Confidence 899999999998764 33333222 223333333578999999999997643111 111 2220 123468
Q ss_pred EEeeeccCCCHHHHHHHHHHHhhh
Q 030000 159 YMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 159 ~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+++||++|.|+++++++|.+.+..
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHhcc
Confidence 999999999999999999987754
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-24 Score=158.31 Aligned_cols=153 Identities=22% Similarity=0.269 Sum_probs=106.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCC--------ccchhHhHHhhcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--------QRRFRTMWERYCR 86 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g--------~~~~~~~~~~~~~ 86 (184)
...+|+++|.+|||||||+|++.+..+. ...+.|.......+...+..+.+||||| ++++......+++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 3579999999999999999999976543 2223344455566667788999999999 7778888888999
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+|++++|+|..+. +.....++..++.. .++|+++|+||+|+.+... ...+.. .......+++||++|
T Consensus 102 ~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~~e~~-----~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 102 EADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIYDFY-----SLGFGEPYPISGTHG 169 (456)
T ss_dssp HCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSG-----GGSSSSEEECCTTTC
T ss_pred hCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hHHHHH-----HcCCCceEEeecccc
Confidence 99999999998654 44455666666654 5799999999999854321 111111 111124679999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|+.++++++.+.+..
T Consensus 170 ~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTHHHHHHHHHTTGGG
T ss_pred cchHHHHHHHHhhccc
Confidence 9999999999887753
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=146.68 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=90.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CC-------CCccceeEEEEe--e--cCEEEEEEEcCCcc-------chh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE-DM-------IPTVGFNMRKVT--K--GNVTIKLWDLGGQR-------RFR 78 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~-------~~t~~~~~~~~~--~--~~~~~~~~d~~g~~-------~~~ 78 (184)
..++|+++|.+|+|||||+|++++.+... .+ .+|.+....... . ..+.+++|||||.. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46899999999999999999988665432 22 455655544432 2 23689999999973 222
Q ss_pred HhH-------Hhhcc-------------CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 79 TMW-------ERYCR-------------GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 79 ~~~-------~~~~~-------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
... ..++. ++|+++++++...... ......+...+.. ++|+++|+||+|+....+
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~-~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-KPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSC-CHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCC-CHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 222 22222 3679999998765332 2333333333333 799999999999976544
Q ss_pred HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 139 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.....+.+.. ......++++.+|+++++|+++++++|.+.++
T Consensus 162 ~~~~~~~i~~-~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 162 CQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHH-HHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHH-HHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 4333332211 11123456888999999999999999988764
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=157.58 Aligned_cols=159 Identities=22% Similarity=0.267 Sum_probs=108.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC----CCCCccceeEEEEe----------------ecCEEEEEEEcCCccch
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE----DMIPTVGFNMRKVT----------------KGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~----~~~~t~~~~~~~~~----------------~~~~~~~~~d~~g~~~~ 77 (184)
+.++|+++|++++|||||++++++..+.. ...++.+....... .....+++|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 56899999999999999999998654322 22234444433221 11236999999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--------------H----
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------K---- 139 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~---- 139 (184)
...+...++.+|++++|+|+++.-..+....+ ..+.. .++|+++++||+|+..... .
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~ 158 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-HHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-HHHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHHH
Confidence 98888888999999999999985433333222 22222 4789999999999964211 0
Q ss_pred H-------HHHHHh---CCCc-------cCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 140 Q-------ALVDQL---GLES-------ITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 140 ~-------~~~~~~---~~~~-------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
+ +..+.+ ++.. .....++++++||++|.|+++++++|...++
T Consensus 159 ~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 111111 1100 0134568999999999999999999998765
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=138.50 Aligned_cols=158 Identities=14% Similarity=0.113 Sum_probs=101.1
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEeecCEEEEEEEcCCc-----------cchhH
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI----PTVGFNMRKVTKGNVTIKLWDLGGQ-----------RRFRT 79 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~-----------~~~~~ 79 (184)
+....++|+++|++|+|||||++++++..+..... .|.......+...+..+.+|||||. ..+..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34467999999999999999999999887754433 3444555567778899999999993 34555
Q ss_pred hHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccCHH-----------HHHHHhC
Q 030000 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQ-----------ALVDQLG 147 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~-----------~~~~~~~ 147 (184)
.+...++++|++++|+|+++.... ...++..+..... ....|+++|+||+|+......+ ++.+.++
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 555667789999999999765442 2233333321111 1235999999999987654333 2222222
Q ss_pred CCccCCCceeEEEeeec-----cCCCHHHHHHHHHHHhhh
Q 030000 148 LESITDREVCCYMISCK-----DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~-----~~~~i~~l~~~i~~~~~~ 182 (184)
..++.++.. ++.++.++++.+.+.+..
T Consensus 183 --------~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 183 --------DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp --------SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 124445444 336899999999887765
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-25 Score=162.68 Aligned_cols=157 Identities=23% Similarity=0.259 Sum_probs=108.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
++..+|+++|++++|||||++++....+.... +.|.......+...+..+++|||||++.|...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 35689999999999999999999865443322 2233333334455667899999999999999888889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC----ccCCCceeEEEeeeccCCCHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE----SITDREVCCYMISCKDSINID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+++....+.... +..... .++|+++++||+|+..... ++....+... ......++++++||++|.|++
T Consensus 82 Vda~~g~~~qT~e~-l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQTIEA-IQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTTTHHH-HHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHHHHHH-HHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99987433222222 222211 4789999999999965321 1111111110 111124689999999999999
Q ss_pred HHHHHHHHH
Q 030000 171 AVIDWLIKH 179 (184)
Q Consensus 171 ~l~~~i~~~ 179 (184)
++++++...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998753
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=150.97 Aligned_cols=115 Identities=21% Similarity=0.272 Sum_probs=84.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC--CC----------------------CCCCCccceeEEEEeecCEEEEEEEcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG--YS----------------------EDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~----------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~ 72 (184)
.+..+|+++|++|+|||||+++++... .. ...+.|.......+.+.++.+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 467899999999999999999998531 10 011123333445577888999999999
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
|+.+|......+++.+|++|+|+|+.+..... ....+. ... ..++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~-~~~---~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLME-VTR---LRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHH-HHT---TTTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHH-HHH---HcCCCEEEEEcCcCCccc
Confidence 99999988889999999999999998764432 222222 222 257899999999999654
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-23 Score=161.18 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=104.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------CCCccceeEEEEeecC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSED---------------------------------MIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~---------------------------------~~~t~~~~~~~~~~~~ 63 (184)
+..++|+++|++++|||||+++|++...... .+.|.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 4579999999999999999999986532111 2345666666777888
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC---CH---HHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SV---PIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
..+.+|||||++++...+..++..+|++|+|+|++++. ++ ......+. ..... ...|+++|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~-~~~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHH-HHHTT--TCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHH-HHHHc--CCCeEEEEEecccccchh
Confidence 99999999999999999999999999999999997631 11 11222222 22221 224599999999997621
Q ss_pred --CHH----HHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 138 --SKQ----ALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 138 --~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
..+ ++...+..........+++++||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 111 11111111111123468999999999999865
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=159.92 Aligned_cols=160 Identities=17% Similarity=0.103 Sum_probs=110.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC-------CC-----------CCCCCccceeEEEEeecCEEEEEEEcCCccchh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG-------YS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~-------~~-----------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 78 (184)
+..++|+++|++++|||||+++|.+.. +. ...+.|.......++..+..+.+|||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 457999999999999999999998631 00 112223333344566677899999999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCH-----HHHHHHhCCCccC
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-----QALVDQLGLESIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~ 152 (184)
..+...+..+|++|+|+|+++....+. ..++..+.. .++| +++++||+|+.+.... ++..+.+......
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 988899999999999999988654443 333333322 3678 7899999999752211 1222222111122
Q ss_pred CCceeEEEeeeccC--------CCHHHHHHHHHHHhh
Q 030000 153 DREVCCYMISCKDS--------INIDAVIDWLIKHSK 181 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~--------~~i~~l~~~i~~~~~ 181 (184)
...++++++||++| .|+.++++.|.+.++
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 23568999999999 468999999988664
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-23 Score=154.35 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=90.3
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcC--CCC-------------------------------CCCCCccceeEEEEee
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATG--GYS-------------------------------EDMIPTVGFNMRKVTK 61 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~--~~~-------------------------------~~~~~t~~~~~~~~~~ 61 (184)
..+..++|+++|++++|||||+++|+.. .+. ...+.|++.....+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 3466799999999999999999999741 111 1233455555556777
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC---CHH---HHHHHHHHHhcCCCCCCCc-EEEEEeCCCcc
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SVP---IARSELHELLMKPSLSGIP-LLVLGNKIDKS 134 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 134 (184)
.+..+.+|||||+++|...+...+..+|++|+|+|+++.. +|. .....+.... . .++| +++++||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~---~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-T---QGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-H---TTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-H---cCCCEEEEEEECccCC
Confidence 7899999999999999998888999999999999998752 121 1112222121 1 3677 99999999996
Q ss_pred ccc-C---HH----HHHHHhCCC-ccC-CCceeEEEeeeccCCCHHHHH
Q 030000 135 EAL-S---KQ----ALVDQLGLE-SIT-DREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 135 ~~~-~---~~----~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
... + .+ +..+.+... .+. ...++++++||++|.|+.+++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 421 1 11 122211110 111 125689999999999998754
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-23 Score=152.15 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=103.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------------------------CCCCccceeEEEEeecC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG--GYSE-------------------------------DMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 63 (184)
+..++|+++|++++|||||+++|+.. .+.. ..+.|.+.....++..+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46799999999999999999999853 2211 13456666666778888
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC---CHH---HHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SVP---IARSELHELLMKPSLSGIP-LLVLGNKIDKSEA 136 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~ 136 (184)
..+.+|||||+++|...+...+..+|++++|+|+++.. +|. .....+... .. .++| +++++||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEccccccC
Confidence 99999999999999999999999999999999997642 110 222222222 21 3565 8999999999731
Q ss_pred --cCHHHHHHHh----CCCccCCCceeEEEeeeccCCCHHH
Q 030000 137 --LSKQALVDQL----GLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 137 --~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
...++..+.+ .........++++++||++|+|+.+
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 1111222211 1111111246899999999999874
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=150.21 Aligned_cols=115 Identities=20% Similarity=0.172 Sum_probs=88.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CC------CC------------CCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG--GY------SE------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~--~~------~~------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
.+..+|+++|++|+|||||+++++.. .+ .. ....|.......+.+.++.+++|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 56789999999999999999999831 11 00 234566666666778899999999999999
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
|...+..+++.+|++++|+|+++.........|.. ... .++|+++++||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccC
Confidence 99999999999999999999998888776655443 322 37999999999998754
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-24 Score=161.87 Aligned_cols=161 Identities=18% Similarity=0.137 Sum_probs=90.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CC--CCCCCccceeEEEEeec
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGG-------------------------------YS--EDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~-------------------------------~~--~~~~~t~~~~~~~~~~~ 62 (184)
.+..++|+++|++++|||||+++|+... .. ...+.|.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999996311 00 01223445555556667
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC---CH---HHHHHHHHHHhcCCCCCCCc-EEEEEeCCCccc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SV---PIARSELHELLMKPSLSGIP-LLVLGNKIDKSE 135 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~ 135 (184)
+..+.+|||||+++|...+...+..+|++|+|+|++++. .+ ......+... .. .++| +++|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~-~~---lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLL-RA---LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHH-HH---SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHH-HH---cCCCeEEEEEecccccc
Confidence 788999999999999888888899999999999998643 11 1112222222 22 2455 899999999975
Q ss_pred c--cCH----HHHHHHh-CCCccCCCceeEEEeeeccCCCHH--------------HHHHHHHHHh
Q 030000 136 A--LSK----QALVDQL-GLESITDREVCCYMISCKDSINID--------------AVIDWLIKHS 180 (184)
Q Consensus 136 ~--~~~----~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~--------------~l~~~i~~~~ 180 (184)
. ... .++.+.+ .........++++++||++|.|+. .+++.|...+
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 2 111 2233333 222222345689999999999998 6888776654
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=138.99 Aligned_cols=176 Identities=18% Similarity=0.155 Sum_probs=107.0
Q ss_pred hHHHHHHHHhhhhc--cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CC-Cccce---eEEE-----------------
Q 030000 3 FLDSILNWLRSLFF--KQEMELSLIGLQNAGKTSLVNTIATGGYSED-MI-PTVGF---NMRK----------------- 58 (184)
Q Consensus 3 ~~~~~~~~~~~~~~--~~~~~i~v~G~~~~GKstli~~~~~~~~~~~-~~-~t~~~---~~~~----------------- 58 (184)
+++.+.+.+..+.. ...++|+|+|.+|+|||||+|++++..+.+. .. .|... ....
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~ 85 (315)
T 1jwy_B 6 VINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFL 85 (315)
T ss_dssp HHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEES
T ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhh
Confidence 45566666655432 3568999999999999999999998775221 11 01000 0000
Q ss_pred ----------------------------------------EeecCEEEEEEEcCCccc-------------hhHhHHhhc
Q 030000 59 ----------------------------------------VTKGNVTIKLWDLGGQRR-------------FRTMWERYC 85 (184)
Q Consensus 59 ----------------------------------------~~~~~~~~~~~d~~g~~~-------------~~~~~~~~~ 85 (184)
.......+.+|||||... +......++
T Consensus 86 ~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (315)
T 1jwy_B 86 HKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI 165 (315)
T ss_dssp SSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH
Confidence 111335799999999753 445667788
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeec
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+++|++++|+|..+..........+...+.. .+.|+++|+||+|+..... ..+..+. .........+++..+|+.
T Consensus 166 ~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~sa~ 241 (315)
T 1jwy_B 166 KKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTG-RVIPLTLGFIGVINRSQE 241 (315)
T ss_dssp HSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTT-SSSCCTTCEEECCCCCHH
T ss_pred cCCCeEEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhC-CCccCCCCeEEEecCChh
Confidence 9999999999974332111111122223332 4789999999999976543 1222221 011111233455666777
Q ss_pred c---CCCHHHHHHHHHHHhhh
Q 030000 165 D---SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~---~~~i~~l~~~i~~~~~~ 182 (184)
+ +.|+.++++.+.+.++.
T Consensus 242 ~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 242 DIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp HHSSSCCHHHHHHHHHHHHHT
T ss_pred hhccCCCHHHHHHHHHHHHhC
Confidence 7 88999999998887754
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-21 Score=149.16 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=107.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccc-ee----------EEEE------------------------
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVG-FN----------MRKV------------------------ 59 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~-~~----------~~~~------------------------ 59 (184)
....++|+|+|.+|+|||||+|+|++....+ ...++.. .. ...+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 3567999999999999999999999876432 2223221 00 0000
Q ss_pred --------------------eecC----EEEEEEEcCCccc---hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHH
Q 030000 60 --------------------TKGN----VTIKLWDLGGQRR---FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHE 112 (184)
Q Consensus 60 --------------------~~~~----~~~~~~d~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 112 (184)
.... ..+.+|||||... .......+++++|++++|+|++++.+......+...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 0000 3589999999665 334566788999999999999988777665544322
Q ss_pred HhcCCCCCCCcEEEEEeCCCccccc-----CHHH-------HH----HHhCCC----ccCCCceeEEEeeec--------
Q 030000 113 LLMKPSLSGIPLLVLGNKIDKSEAL-----SKQA-------LV----DQLGLE----SITDREVCCYMISCK-------- 164 (184)
Q Consensus 113 ~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~-------~~----~~~~~~----~~~~~~~~~~~~Sa~-------- 164 (184)
+ .. .+.|+++|+||+|+.... +.++ +. ..+... .......+++++||+
T Consensus 226 l-~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 I-KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp T-TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred H-Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 2 22 367899999999987542 1101 11 111110 001223469999999
Q ss_pred ------cCCCHHHHHHHHHHHhhh
Q 030000 165 ------DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ------~~~~i~~l~~~i~~~~~~ 182 (184)
+|.|++++++.+.+.+..
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=130.89 Aligned_cols=160 Identities=20% Similarity=0.190 Sum_probs=99.0
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecCEEEEEEEcCCccc----------hhHhH
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQRR----------FRTMW 81 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~----------~~~~~ 81 (184)
+...+..+|+++|++|||||||++++.+..+.....++.|... ..+...+ .+.+||+||... +....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 4556778999999999999999999987664333333433221 1222222 578999999742 23333
Q ss_pred Hhhc---cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH----HHHHhCCCccCCC
Q 030000 82 ERYC---RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA----LVDQLGLESITDR 154 (184)
Q Consensus 82 ~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~ 154 (184)
..++ ..++++++++|+.++.+.... .+..++.. .+.|+++++||+|+.+....+. ....+.. ...
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~~ 171 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FNG 171 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GCS
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cCC
Confidence 3343 568999999999887665421 12222222 4689999999999876432222 2222211 112
Q ss_pred ceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 155 EVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
...++++|++++.|+++++++|.+.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 3568899999999999999999887654
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-22 Score=145.79 Aligned_cols=158 Identities=16% Similarity=0.238 Sum_probs=81.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--------CCccceeEEEE--eec--CEEEEEEEcCCc-------cc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDM--------IPTVGFNMRKV--TKG--NVTIKLWDLGGQ-------RR 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~--------~~t~~~~~~~~--~~~--~~~~~~~d~~g~-------~~ 76 (184)
...++|+|+|++|+|||||++++++.... ... .+|.+.....+ ... ...+++|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45689999999999999999998765432 221 13444443332 222 357999999998 55
Q ss_pred hhHhHH-------hhccCC-------------CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 77 FRTMWE-------RYCRGV-------------SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 77 ~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
+...+. .+++.+ ++++|+++.. ..++......+...+. .++|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 555544 444332 3455555542 4456655544433332 57999999999999765
Q ss_pred cCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 137 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.....+.+... ......+++++++||++|.+ ++.+.++.+.+.
T Consensus 190 ~ev~~~k~~i~-~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 190 KERERLKKRIL-DEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHHH-HHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 43332212221 11223356799999999998 777666666553
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=145.32 Aligned_cols=115 Identities=20% Similarity=0.125 Sum_probs=86.3
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCC--------------------CCCCccceeEEEEeecCEEEEEEEcCCc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSE--------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~--------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~ 74 (184)
...+..+|+++|+.|+|||||++++++..... ....|.......+....+.+++|||||+
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 34567899999999999999999998432210 0112333444556678899999999999
Q ss_pred cchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
.++......+++.+|++++|+|+.+....... .++..... .++|+++++||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence 99999999999999999999999876554433 33333332 379999999999987
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-20 Score=145.05 Aligned_cols=116 Identities=22% Similarity=0.230 Sum_probs=88.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc--CCCCC------------------CCCCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT--GGYSE------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
.++..+|+++|++|+|||||+++++. +.+.. ....|.......+...++.+++|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 45678999999999999999999984 22110 12334455555677788999999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
++...+..+++.+|++++|+|+.+.........|. .+.. .++|+++++||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEECCCcccc
Confidence 99998999999999999999999877776554443 3332 37899999999999764
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-20 Score=143.28 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=85.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC--CCC------------------CCCCccceeEEEEeecC-------EEEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG--YSE------------------DMIPTVGFNMRKVTKGN-------VTIKLW 69 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~------------------~~~~t~~~~~~~~~~~~-------~~~~~~ 69 (184)
.+..+|+|+|+.|+|||||+++|+... +.. ....|.......+.+.+ +.+++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 456899999999999999999997421 110 12234444444455555 899999
Q ss_pred EcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 70 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 70 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
||||+.+|...+..+++.+|++|+|+|+++.........| ..... .++|+++++||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEeCCCcccc
Confidence 9999999999999999999999999999987655544333 22222 47899999999998653
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=130.91 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=81.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC--CC-CCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhc---------
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS--ED-MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYC--------- 85 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~-~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~--------- 85 (184)
+.++|+++|++|+|||||++++++.... .. ...|.......+...+..+.+|||||+.++......++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~ 114 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVN 114 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhc
Confidence 6799999999999999999999987742 22 22355555666778889999999999877654333322
Q ss_pred cCCCEEEEEEeCCCCCCHHHH-HHHHHHHhcCCCC-CCCcEEEEEeCCCccc
Q 030000 86 RGVSAILYVVDAADRDSVPIA-RSELHELLMKPSL-SGIPLLVLGNKIDKSE 135 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~-~~~~iivv~nK~D~~~ 135 (184)
.++|++++|++++... +... ..++..+...... ...|+++|+||+|+.+
T Consensus 115 ~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 115 RTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp CEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred CCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2689999999987654 4433 3444444322111 1248999999999853
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.3e-20 Score=138.09 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=87.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc-------------CC-----------CCCCCCCccceeEEEEeecCEEEEEEEcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT-------------GG-----------YSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~-------------~~-----------~~~~~~~t~~~~~~~~~~~~~~~~~~d~~ 72 (184)
.+.-+|+|+|+.++|||||..+|+. +. .....+-|+......+.++++.++++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 3567899999999999999999971 10 11223346666667788999999999999
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
|+.+|.......++-+|++|+|+|+...-..+... .|....+ .++|.++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~-v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK-LMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHH-HHHHHHH----hCCceEEEEecccchhc
Confidence 99999999999999999999999998765554433 3344444 48999999999997553
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=135.30 Aligned_cols=170 Identities=16% Similarity=0.178 Sum_probs=102.7
Q ss_pred hHHHHHHHHhhhh---ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC------CCcc---------------------
Q 030000 3 FLDSILNWLRSLF---FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDM------IPTV--------------------- 52 (184)
Q Consensus 3 ~~~~~~~~~~~~~---~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~------~~t~--------------------- 52 (184)
+++.+.+.++... .-..++|+|+|.+|+|||||+|++++..+.+.. .++.
T Consensus 12 ~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~ 91 (353)
T 2x2e_A 12 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKF 91 (353)
T ss_dssp HHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCccc
Confidence 4455666665542 224589999999999999999999987763211 1110
Q ss_pred ----------------------cee----EEEEee-cCEEEEEEEcCCcc-------------chhHhHHhhccCCCEE-
Q 030000 53 ----------------------GFN----MRKVTK-GNVTIKLWDLGGQR-------------RFRTMWERYCRGVSAI- 91 (184)
Q Consensus 53 ----------------------~~~----~~~~~~-~~~~~~~~d~~g~~-------------~~~~~~~~~~~~~~~~- 91 (184)
++. ...+.. ....+.+|||||.. .+......++.+.+.+
T Consensus 92 tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 171 (353)
T 2x2e_A 92 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 171 (353)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEE
Confidence 000 001111 14679999999953 3455666777666654
Q ss_pred EEEEeCCCCCCHHHHHHH-HHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 92 LYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++|.|++. .+...... +...+. ..+.|+++|+||+|+.+... .....+. ..........+++++||++|.|+
T Consensus 172 L~v~~a~~--~~~~~~~~~i~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~l~~~~~~v~~~SA~~~~~i 245 (353)
T 2x2e_A 172 LAVSPANS--DLANSDALKVAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGK 245 (353)
T ss_dssp EEEEETTS--CGGGCHHHHHHHHHC---TTCTTEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCHHHHHTT
T ss_pred EEEecCCC--ccchhHHHHHHHHhC---cCCCceEEEeccccccCcchhHHHHHhC-CcccccCCceEEEeCCccccccc
Confidence 44666643 23222211 222222 35789999999999976433 2222221 11111123457889999999999
Q ss_pred HHHHHHHHH
Q 030000 170 DAVIDWLIK 178 (184)
Q Consensus 170 ~~l~~~i~~ 178 (184)
+++++++.+
T Consensus 246 ~~l~~~l~~ 254 (353)
T 2x2e_A 246 KDITAALAA 254 (353)
T ss_dssp CCHHHHHHH
T ss_pred ccHHHHHHH
Confidence 999998876
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-19 Score=123.39 Aligned_cols=119 Identities=14% Similarity=0.047 Sum_probs=80.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchhH-------hHHhh--
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT-------MWERY-- 84 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~-- 84 (184)
.+.++|+++|.+|+|||||+|++++..+. .....|.......+...+..+.+|||||+.++.. .+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 35799999999999999999999987752 1222343444455677889999999999876542 12222
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHH-HHHHHHhcCCC-CCCCcEEEEEeCCCcccc
Q 030000 85 CRGVSAILYVVDAADRDSVPIAR-SELHELLMKPS-LSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~~iivv~nK~D~~~~ 136 (184)
...+|++++|+|++.. ++.... .++..+..... ....|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2468999999998654 344333 44444432211 112699999999998654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=132.23 Aligned_cols=158 Identities=23% Similarity=0.243 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEeecC-EEEEEEEcCCccch-------hHhHHhhccCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRF-------RTMWERYCRGVS 89 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~-------~~~~~~~~~~~~ 89 (184)
..|+++|++|||||||++++.+.... .....|.......+...+ ..+.+||+||..+. .......++.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 45889999999999999999876432 112234444455555554 78999999997431 112233456799
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
.++.++|++ ..++..+..+..+...... ....|.++++||+|+......+.+.+.+. ....+++.+||++++|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEECCCccC
Confidence 999999998 6667777666665543311 13578999999999876422233333321 1234799999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
+++++++|.+.+.+.
T Consensus 312 i~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 312 LPALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988654
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=130.66 Aligned_cols=109 Identities=13% Similarity=0.076 Sum_probs=72.6
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~ 141 (184)
.++.+.+|||||... .....+..+|++++|+|+...+....+. ....+.|.++|+||+|+.+......
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHH
Confidence 468899999999543 2233458899999999987654442211 1123469999999999975433322
Q ss_pred ----HHHHhCCCcc--CCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 142 ----LVDQLGLESI--TDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 142 ----~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+.+.+..... .....+++.+||++|+|+++++++|.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 2222211100 1123579999999999999999999988753
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=130.00 Aligned_cols=150 Identities=16% Similarity=0.196 Sum_probs=95.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc--e------------------------------------------
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--F------------------------------------------ 54 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~--~------------------------------------------ 54 (184)
-.+|+|+|++|||||||++++.+..+.+....++. .
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 45999999999999999999998776322221110 0
Q ss_pred -------------eEEEEeecCEEEEEEEcCCccch-------------hHhHHhhccCCCEEEEEEeCCCCCCHHHHHH
Q 030000 55 -------------NMRKVTKGNVTIKLWDLGGQRRF-------------RTMWERYCRGVSAILYVVDAADRDSVPIARS 108 (184)
Q Consensus 55 -------------~~~~~~~~~~~~~~~d~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 108 (184)
...........+.+|||||..++ ......+++++|++++|+|..+...... .
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--~ 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--D 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--H
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--H
Confidence 00001112346899999997765 5667788999999999998765443321 1
Q ss_pred HHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 109 ELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 109 ~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
++ .+.......+.|+++|+||+|+.+.... ....+.. ......+++.+|++++.++++.++.
T Consensus 192 ~~-~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AI-KISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGR----SFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HH-HHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTS----SSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HH-HHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCc----cccccCCeEEEEECChHHhccCCCH
Confidence 11 1223333357899999999999764321 2222211 1223456888999998888765544
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-19 Score=140.96 Aligned_cols=114 Identities=20% Similarity=0.221 Sum_probs=86.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC------------CC------CCCCCccceeEEEEee----------------c
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG------------YS------EDMIPTVGFNMRKVTK----------------G 62 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~------------~~------~~~~~t~~~~~~~~~~----------------~ 62 (184)
.+..+|+|+|+.++|||||+++++... +. .....|+......+.+ .
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 467899999999999999999998531 10 0112244433333333 2
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
++.+++|||||+.+|...+..+++.+|++|+|+|+.+..+++....|.. ... .++|+++++||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH----cCCCeEEEEECCCcch
Confidence 6889999999999999999999999999999999999888887654443 322 4789999999999864
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=113.91 Aligned_cols=111 Identities=17% Similarity=0.254 Sum_probs=86.9
Q ss_pred CCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHH---HHHhcCCC-CCCCcEEEEEeCC-CcccccCHHHHHHHh
Q 030000 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSEL---HELLMKPS-LSGIPLLVLGNKI-DKSEALSKQALVDQL 146 (184)
Q Consensus 72 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~~iivv~nK~-D~~~~~~~~~~~~~~ 146 (184)
+||..++..|..|++++|++|||+|++|.+.++ ....+ ..++.... ..++|++|++||. |+.......++.+.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L 188 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 188 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence 379999999999999999999999999987765 55444 33343332 3689999999995 788888899999999
Q ss_pred CCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhhcC
Q 030000 147 GLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 184 (184)
Q Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 184 (184)
++... .+.+.+..|||++|+|+.+.++|+.+.+.+++
T Consensus 189 ~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 189 HLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp TGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred CCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 98876 48999999999999999999999999887653
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-19 Score=118.96 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=94.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc----------------ceeEEEE------------------eec
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV----------------GFNMRKV------------------TKG 62 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~----------------~~~~~~~------------------~~~ 62 (184)
.+..+|+++|.+|+|||||++++...........++ +.....+ ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 456789999999999999999998542111000000 1111111 123
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cCHH
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQ 140 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~ 140 (184)
++.+.+|||+|+..... .+....+.+++|+|+.+.... ...+. .. .+.|+++++||+|+.+. ...+
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~-~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHP-EI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCH-HH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhh-hh------hhcCCEEEEecccCCcchhhHHH
Confidence 56789999999521110 111246789999998765432 11111 11 25789999999998653 2444
Q ss_pred HHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 141 ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+..+.+... ....+++++||++|.|++++++++.+.+..
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 444433211 234579999999999999999999987754
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-19 Score=125.75 Aligned_cols=159 Identities=17% Similarity=0.257 Sum_probs=76.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC-CCCCCC--------CCccceeEEE--E--eecCEEEEEEEcCCc-------cc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG-GYSEDM--------IPTVGFNMRK--V--TKGNVTIKLWDLGGQ-------RR 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~-~~~~~~--------~~t~~~~~~~--~--~~~~~~~~~~d~~g~-------~~ 76 (184)
.-.++|+++|++|+|||||++++++. .++... .++....... + ......+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34689999999999999999998765 333221 1222211111 1 123467999999997 44
Q ss_pred hhHhHH-------hhccC-------------CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 77 FRTMWE-------RYCRG-------------VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 77 ~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
+..... .+++. +++++++.+++. .+++.....+...+. .++|+++|+||+|+...
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHT----TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHH----hcCCEEEEEEeCCCCCH
Confidence 444433 33322 234555555432 234444322222221 36799999999999754
Q ss_pred cCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 137 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.+.....+... ......+++++++||++| |++++|+++.+.+..
T Consensus 171 ~e~~~~~~~~~-~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 KERERLKKRIL-DEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHH-HHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 33221111111 001112357899999999 999999999887753
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=130.84 Aligned_cols=124 Identities=17% Similarity=0.139 Sum_probs=84.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeec------------------------------C-
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKG------------------------------N- 63 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~------------------------------~- 63 (184)
...+|+|+|.+|+|||||+|++++..+. ....++........... .
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4589999999999999999999988763 22222221111000000 0
Q ss_pred ----------EEEEEEEcCCccc-----------hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCC
Q 030000 64 ----------VTIKLWDLGGQRR-----------FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI 122 (184)
Q Consensus 64 ----------~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (184)
..+.+|||||... +......++..+|++++|+|+++.........++..+ . ..+.
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~ 219 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL-R---GHED 219 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT-T---TCGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH-H---hcCC
Confidence 3589999999765 4566677788999999999998765555555554443 2 2468
Q ss_pred cEEEEEeCCCcccccCHHHHHHH
Q 030000 123 PLLVLGNKIDKSEALSKQALVDQ 145 (184)
Q Consensus 123 ~iivv~nK~D~~~~~~~~~~~~~ 145 (184)
|+++|+||+|+.......+....
T Consensus 220 pvilVlNK~Dl~~~~el~~~~~~ 242 (550)
T 2qpt_A 220 KIRVVLNKADMVETQQLMRVYGA 242 (550)
T ss_dssp GEEEEEECGGGSCHHHHHHHHHH
T ss_pred CEEEEEECCCccCHHHHHHHHHH
Confidence 99999999999865544444443
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-18 Score=121.28 Aligned_cols=108 Identities=16% Similarity=0.069 Sum_probs=65.8
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-- 139 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-- 139 (184)
.++.+.++||||.... .......+|++++|+|+..+........ .+ ...|.++++||+|+.+....
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 5678999999995322 2334678999999999876532221111 11 24578999999999653221
Q ss_pred --HHHHHHhCCCcc--CCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 140 --QALVDQLGLESI--TDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 140 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
..+...+..... .....+++.+||++|+|+++++++|.+.+.
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 223332222111 012347899999999999999999988764
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.9e-19 Score=135.43 Aligned_cols=158 Identities=22% Similarity=0.260 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCC------CC------------CCCCccceeEEEEeecCEEEEEEEcCCccchhH
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT--GGY------SE------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 79 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~--~~~------~~------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 79 (184)
.+|+|+|+.++|||||..+|+. +.. .. ..+-|+......+.++++.++++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999972 111 00 011244444455778899999999999999999
Q ss_pred hHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH---HHHHHHhCCCc------
Q 030000 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---QALVDQLGLES------ 150 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~------ 150 (184)
.....++-+|++|+|+|+...-..+. ...+..... .++|.++++||+|....+.. +++.+.++...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 99999999999999999987644443 333343433 37899999999997654322 22222222100
Q ss_pred --------------------------------------------------cCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 151 --------------------------------------------------ITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 151 --------------------------------------------------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
....-.|++..||+++.|++.+++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 001235788899999999999999999876
Q ss_pred hh
Q 030000 181 KT 182 (184)
Q Consensus 181 ~~ 182 (184)
+.
T Consensus 238 p~ 239 (638)
T 3j25_A 238 YS 239 (638)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-19 Score=125.00 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=102.3
Q ss_pred HHHHHHhcCCCC-CCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC-CHHHHHHHHH
Q 030000 34 SLVNTIATGGYS-EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD-SVPIARSELH 111 (184)
Q Consensus 34 tli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~ 111 (184)
+|+.++..+.|. ..+.+|+|..+...-..+..+.+||+ ++++...+..+++++|++++|+|++++. ++..+..|+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~ 109 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLV 109 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHH
Confidence 678888888887 78889999554421112237899999 9999999999999999999999999987 7888888877
Q ss_pred HHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 112 ELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 112 ~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
.+.. .++|+++|+||+|+.+... .+++.+.+.. . ++++++||++|.|++++|+.+..
T Consensus 110 ~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 110 LAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 6543 4799999999999965432 2233333321 1 57999999999999999988754
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-19 Score=130.04 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEe------------------------ecCEEEEEEEcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVT------------------------KGNVTIKLWDLGG 73 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~------------------------~~~~~~~~~d~~g 73 (184)
++|+++|.+|+|||||+|++++........ .|......... .....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999876322221 23332222110 1136799999999
Q ss_pred ccch----hHhHH---hhccCCCEEEEEEeCCCC
Q 030000 74 QRRF----RTMWE---RYCRGVSAILYVVDAADR 100 (184)
Q Consensus 74 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 100 (184)
.... ..... .+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 346889999999999875
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-18 Score=126.45 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=73.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC-------CCccceeEEEE--e--ecCEEEEEEEcCCccchh-------
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS-EDM-------IPTVGFNMRKV--T--KGNVTIKLWDLGGQRRFR------- 78 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~-------~~t~~~~~~~~--~--~~~~~~~~~d~~g~~~~~------- 78 (184)
-.++|+++|++|+|||||++.+++..+. ... .+|.+.....+ . .....+++||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 3588999999999999999999977652 211 12222221111 1 122478999999976531
Q ss_pred HhH------------------HhhccCCCEEEEEEeCCCC-CCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 79 TMW------------------ERYCRGVSAILYVVDAADR-DSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 79 ~~~------------------~~~~~~~~~~i~v~d~~~~-~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
... ..++.++++.+++|+.... .++..... ++..+ . .++|+++|+||+|+.....
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccHHH
Confidence 110 1123444543444443322 34555543 33333 2 3799999999999976443
Q ss_pred HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 139 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
...+.+.... .....+++++++|++++.++++++..+.+.++
T Consensus 185 v~~~k~~i~~-~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 185 CQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHH-HHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHH-HHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 3322221110 11122456899999999999999888877654
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=124.44 Aligned_cols=116 Identities=17% Similarity=0.164 Sum_probs=82.3
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc--------CCC------------CCCCCCccceeEEEEee-------cCEEEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT--------GGY------------SEDMIPTVGFNMRKVTK-------GNVTIK 67 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~--------~~~------------~~~~~~t~~~~~~~~~~-------~~~~~~ 67 (184)
+.++.-+|+|+|+.++|||||..+|+. ++. ....+-|+......+.+ .++.++
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 346677899999999999999999981 111 11122233333333433 368999
Q ss_pred EEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 68 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 68 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
++|||||.+|.......++-+|++|+|+|+...-..+. ...+..... .++|.++++||+|...
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHH----cCCCeEEEEccccccC
Confidence 99999999999999999999999999999987654443 333344433 4899999999999754
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=123.77 Aligned_cols=170 Identities=16% Similarity=0.108 Sum_probs=104.7
Q ss_pred HHHHHHHHhhhhc---cceeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCC-ccce------------------------
Q 030000 4 LDSILNWLRSLFF---KQEMELSLIGLQNAGKTSLVNTIATGGY-SEDMIP-TVGF------------------------ 54 (184)
Q Consensus 4 ~~~~~~~~~~~~~---~~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~-t~~~------------------------ 54 (184)
++.+.+.++.... -...+|+|+|..++|||||+|++++..+ +..... |...
T Consensus 33 inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~ 112 (772)
T 3zvr_A 33 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFT 112 (772)
T ss_dssp HHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBC
T ss_pred HHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccC
Confidence 3444455554422 2468999999999999999999998776 322221 1100
Q ss_pred ---------------------------eEEEEe-ecCEEEEEEEcCCccc-------------hhHhHHhhc-cCCCEEE
Q 030000 55 ---------------------------NMRKVT-KGNVTIKLWDLGGQRR-------------FRTMWERYC-RGVSAIL 92 (184)
Q Consensus 55 ---------------------------~~~~~~-~~~~~~~~~d~~g~~~-------------~~~~~~~~~-~~~~~~i 92 (184)
....+. ....++.++||||... .......++ ..+|+++
T Consensus 113 ~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL 192 (772)
T 3zvr_A 113 DFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLIL 192 (772)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEE
T ss_pred CHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEE
Confidence 000011 1123588999999432 233444444 5789999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|+|++...........+. .+.. .+.|+++|+||+|+.+.... ..+.. -..........+++.+||++|.|+++
T Consensus 193 ~VVDAs~~~~~~d~l~ll~-~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~Gvde 267 (772)
T 3zvr_A 193 AVSPANSDLANSDALKIAK-EVDP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKD 267 (772)
T ss_dssp EEEETTSCSSSCHHHHHHH-HHCT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEE
T ss_pred EEEcCCCCcchhHHHHHHH-HHHh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchh
Confidence 9999986543333222222 2222 47899999999999865432 22221 11111122455788999999999999
Q ss_pred HHHHHHH
Q 030000 172 VIDWLIK 178 (184)
Q Consensus 172 l~~~i~~ 178 (184)
+++.+.+
T Consensus 268 L~eaI~~ 274 (772)
T 3zvr_A 268 ITAALAA 274 (772)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999886
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=115.77 Aligned_cols=118 Identities=14% Similarity=-0.030 Sum_probs=72.2
Q ss_pred EEEEEEEcCCccchhHhH------HhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 64 VTIKLWDLGGQRRFRTMW------ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
+.+.+|||||+.+..... ...+.+ +++++++|+.......................+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 579999999987654321 124566 8999999986554444333221111110111368999999999986543
Q ss_pred CHHHHHHHhCC-------------------------CccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 138 SKQALVDQLGL-------------------------ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 138 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..++..+.+.. ........+++++||++|+|+++++++|.+.++.
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 22222211100 0000122368999999999999999999988764
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-18 Score=121.99 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=67.7
Q ss_pred ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH
Q 030000 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140 (184)
Q Consensus 61 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~ 140 (184)
..++++.+|||||....... ....+|++++|+|+........... ...+.|.++|+||+|+.......
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---------~~~~~p~ivv~NK~Dl~~~~~~~ 213 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---------GLMEVADLIVINKDDGDNHTNVA 213 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---------HHHHHCSEEEECCCCTTCHHHHH
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---------hhhcccCEEEEECCCCCChHHHH
Confidence 34678999999997654332 4578999999999865432211100 00146889999999986543222
Q ss_pred ----HHHHHhCCCcc--CCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 141 ----ALVDQLGLESI--TDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 141 ----~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
++.+.+..... .....+++++||++|.|+++++++|.+.+.
T Consensus 214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22222111110 111346899999999999999999988764
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-17 Score=112.84 Aligned_cols=112 Identities=17% Similarity=0.250 Sum_probs=90.1
Q ss_pred cCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHH---HHhcCCC-CCCCcEEEEEeC-CCcccccCHHHHHHH
Q 030000 71 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELH---ELLMKPS-LSGIPLLVLGNK-IDKSEALSKQALVDQ 145 (184)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~~iivv~nK-~D~~~~~~~~~~~~~ 145 (184)
.+||..++..|..|++++|++|||+|++|.+.++ ....+. .++.... ..++|++|++|| .|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4678999999999999999999999999998876 444333 3333211 357999999996 689888889999999
Q ss_pred hCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhhcC
Q 030000 146 LGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 184 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 184 (184)
+++... .+.+.+..|||++|+|+.+.++|+.+.+.+++
T Consensus 273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 998876 47899999999999999999999999987653
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=107.88 Aligned_cols=153 Identities=15% Similarity=0.201 Sum_probs=87.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----------------EEee-------------------
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----------------KVTK------------------- 61 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----------------~~~~------------------- 61 (184)
.+.++|+++|.+|||||||+++++...+.....++++..+. .+..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 45789999999999999999999976544333333332111 1110
Q ss_pred -cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cC
Q 030000 62 -GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LS 138 (184)
Q Consensus 62 -~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~ 138 (184)
....+.++|++|.-.... .+-...+..+.++|.......... . ... .+.|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~--~-~~~------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK--H-PGI------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT--C-HHH------HTTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh--h-hhH------hhcCCEEEEeccccCchhHHH
Confidence 011455555555211100 011123445566664322111100 0 011 14678999999998654 23
Q ss_pred HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhhcC
Q 030000 139 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 184 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 184 (184)
.++..+.+... ....+++++||++|.|++++++++.+.+...|
T Consensus 184 ~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 226 (226)
T 2hf9_A 184 IKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEVK 226 (226)
T ss_dssp HHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHhhC
Confidence 44433333210 22357999999999999999999999887654
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=109.32 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=57.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEeecC-----------------EEEEEEEcCCccchhH-
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRRFRT- 79 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~~~- 79 (184)
++|+++|.+|+|||||+|++.+..+.... .+|.+.....+...+ ..+.+||+||+.++.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987643222 235554444444332 5799999999876532
Q ss_pred ------hHHhhccCCCEEEEEEeCCC
Q 030000 80 ------MWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 80 ------~~~~~~~~~~~~i~v~d~~~ 99 (184)
....+++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23345789999999999986
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=109.09 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=76.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecCEEEEEEEcCCccch-------hHhHHhhccCCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRF-------RTMWERYCRGVS 89 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~-------~~~~~~~~~~~~ 89 (184)
..+|+++|.|++|||||+|++.+.+.... +..|.......+...+.+++++|+||.... ....-..++.+|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 35899999999999999999998665333 345777888889999999999999995322 122334577899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCcEEEEEeCCCc
Q 030000 90 AILYVVDAADRDSVPIARSELHELLM-KPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~ 133 (184)
++++|+|+.++ .........++.. .....+.|.++++||.|.
T Consensus 152 ~il~vvD~~~p--~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 152 LLFIILDVNKP--LHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEEETTSH--HHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred ccccccccCcc--HHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 99999999864 2222211111111 111234566667777774
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-15 Score=105.37 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=65.3
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--- 138 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--- 138 (184)
.++++.++||||...-.. .....+|.+++++|+...+....+... ....+.++++||+|+.....
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---------i~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---------IFELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---------HHHHCSEEEEECCSTTCCHHHHH
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---------HhccccEEEEEchhccCchhHHH
Confidence 568899999999654322 234689999999998643221111000 01245677889999753221
Q ss_pred --HHHHHHHhCCCccC--CCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 139 --KQALVDQLGLESIT--DREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 139 --~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.+++...+...... ....+++.+||++|.|++++++.|.+...
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 23333333221110 01246888999999999999999988764
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=103.21 Aligned_cols=80 Identities=21% Similarity=0.288 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEee---------------------cCEEEEEEEcCCccc
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTK---------------------GNVTIKLWDLGGQRR 76 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~---------------------~~~~~~~~d~~g~~~ 76 (184)
++|+++|.+|+|||||++++.+...... +..|...+...... ....+.+||+||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999987542211 11233333332221 245799999999765
Q ss_pred hh-------HhHHhhccCCCEEEEEEeCCC
Q 030000 77 FR-------TMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 77 ~~-------~~~~~~~~~~~~~i~v~d~~~ 99 (184)
.. .....+++.+|++++|+|+.+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 234456889999999999975
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-13 Score=97.75 Aligned_cols=86 Identities=17% Similarity=0.279 Sum_probs=52.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEeec-----------------CEEEEEEEcCCccch
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKG-----------------NVTIKLWDLGGQRRF 77 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~-----------------~~~~~~~d~~g~~~~ 77 (184)
...++|+++|.+|+|||||+|++.+....... ..|.......+... ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45689999999999999999999987653322 23444444444332 235999999998765
Q ss_pred hH-------hHHhhccCCCEEEEEEeCCCCCC
Q 030000 78 RT-------MWERYCRGVSAILYVVDAADRDS 102 (184)
Q Consensus 78 ~~-------~~~~~~~~~~~~i~v~d~~~~~~ 102 (184)
.+ .+..+++++|++++|+|+.+..+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 44 45667899999999999986544
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=92.26 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=72.6
Q ss_pred ccchhHhHHhhccCCCEEEEEEeCCCCC-CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCC
Q 030000 74 QRRFRTMWERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLE 149 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~ 149 (184)
++++......++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... .++..+...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~-- 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYR-- 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHH--
Confidence 6677777777899999999999999886 88888888875543 4799999999999975431 222222221
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
...++++++||++|.|++++++.+..
T Consensus 140 ---~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 140 ---DAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp ---HTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred ---HCCCeEEEEECCCCCCHHHHHhhccC
Confidence 11347999999999999999987654
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=92.91 Aligned_cols=154 Identities=17% Similarity=0.156 Sum_probs=87.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh------cCCCC---C-CCCCc-----------cceeEEE-----------------E
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA------TGGYS---E-DMIPT-----------VGFNMRK-----------------V 59 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~------~~~~~---~-~~~~t-----------~~~~~~~-----------------~ 59 (184)
+...|+++|.+||||||+++.+. +.+.. . .+.+. .+..... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998 22210 0 00000 0111111 1
Q ss_pred eecCEEEEEEEcCCccchh----HhHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcE-EEEEeCCC
Q 030000 60 TKGNVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPL-LVLGNKID 132 (184)
Q Consensus 60 ~~~~~~~~~~d~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D 132 (184)
...++.+.++||||..... ...... ...+|.+++|+|+......... ...+ .. .+|+ .+|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~-~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAF-KD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHH-HH----HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHH-Hh----hcCceEEEEeCCc
Confidence 1256889999999965321 111111 2278999999999775432222 2222 11 2564 88899999
Q ss_pred cccccCH-HHHHHHhCCCc--------cC--CCceeEEEeeeccCCC-HHHHHHHHHHH
Q 030000 133 KSEALSK-QALVDQLGLES--------IT--DREVCCYMISCKDSIN-IDAVIDWLIKH 179 (184)
Q Consensus 133 ~~~~~~~-~~~~~~~~~~~--------~~--~~~~~~~~~Sa~~~~~-i~~l~~~i~~~ 179 (184)
....... ......++..- .. ....+.+.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8754332 22333332210 00 0122345689999999 99999998765
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.5e-11 Score=86.48 Aligned_cols=138 Identities=12% Similarity=0.183 Sum_probs=70.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----C--ccceeEEEEeecC--EEEEEEEcCCccch-------------
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMI----P--TVGFNMRKVTKGN--VTIKLWDLGGQRRF------------- 77 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~----~--t~~~~~~~~~~~~--~~~~~~d~~g~~~~------------- 77 (184)
.++++|+|++|+|||||++.+++..+..... + +............ ..++++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 3569999999999999999998764321111 1 1111111112222 36889999874321
Q ss_pred -hHhHHhhc-------------cCC--CE-EEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH
Q 030000 78 -RTMWERYC-------------RGV--SA-ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140 (184)
Q Consensus 78 -~~~~~~~~-------------~~~--~~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~ 140 (184)
...+..++ .++ |+ ++++.|+..+ +......+...+. .++|+++|.||+|.....+..
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~E~~ 195 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD----SKVNIIPIIAKADAISKSELT 195 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh----hCCCEEEEEcchhccchHHHH
Confidence 11111111 122 33 4455565433 2233333333332 578999999999998766555
Q ss_pred HHHHHhCCCccCCCceeEEEeee
Q 030000 141 ALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.+.+.+.. .....+++++++|.
T Consensus 196 ~l~~~I~~-~L~~~gi~I~~is~ 217 (427)
T 2qag_B 196 KFKIKITS-ELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHH-HHBTTBCCCCCCC-
T ss_pred HHHHHHHH-HHHHcCCcEEecCC
Confidence 54444432 12234455666664
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-10 Score=81.51 Aligned_cols=159 Identities=16% Similarity=0.225 Sum_probs=87.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc-cee----EEEEeecC-EEEEEEEcCCccch----hHhHHh-hc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV-GFN----MRKVTKGN-VTIKLWDLGGQRRF----RTMWER-YC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~-~~~----~~~~~~~~-~~~~~~d~~g~~~~----~~~~~~-~~ 85 (184)
.....++++|++|||||||+|.+.+-..+....-+. +.. ...+.... ..+.+||++|.... ...... .+
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 345689999999999999999998733221111111 100 11122222 25789999984321 111111 23
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc---------ccCHHHHHHHhCCC------c
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE---------ALSKQALVDQLGLE------S 150 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~---------~~~~~~~~~~~~~~------~ 150 (184)
...+..+. ++... +...+..+...+.. .+.|+++|.||.|+.- ....+++.+.+... .
T Consensus 147 ~~~~~~~~-lS~G~---~~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATR---FKKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSC---CCHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCC---ccHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34455554 77642 12222233333332 3689999999999751 12233333222211 0
Q ss_pred cCCCceeEEEeee--ccCCCHHHHHHHHHHHhhh
Q 030000 151 ITDREVCCYMISC--KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 151 ~~~~~~~~~~~Sa--~~~~~i~~l~~~i~~~~~~ 182 (184)
.......++.+|+ .++.|++++.+.+.+.++.
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 0011235788999 6777899999999988765
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=84.46 Aligned_cols=83 Identities=22% Similarity=0.363 Sum_probs=60.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCC--CccceeEEEEeecC-----------------EEEEEEEcCCccc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY-SEDMI--PTVGFNMRKVTKGN-----------------VTIKLWDLGGQRR 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~--~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~ 76 (184)
.+..+|+++|++|+|||||+|.+.+... ..... .|.......+...+ ..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4568999999999999999999998654 33322 24455555544433 4689999999432
Q ss_pred -------hhHhHHhhccCCCEEEEEEeCCC
Q 030000 77 -------FRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 77 -------~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
....+...++.+|+++.|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33355566789999999999864
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.7e-12 Score=91.18 Aligned_cols=113 Identities=12% Similarity=0.051 Sum_probs=66.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC------CCCCCC--CCccceeEEEEeecCEEEEEEEcCCccchh--------HhHH
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG------GYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--------TMWE 82 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~------~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~--------~~~~ 82 (184)
..+|+++|.+|+|||||+|++++. ...... ..|.......+.. .+.++||||..... ....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 468999999999999999999965 222121 2233322222221 27899999943221 1122
Q ss_pred hhc--cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH
Q 030000 83 RYC--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139 (184)
Q Consensus 83 ~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~ 139 (184)
..+ +..+.+++++++...-.+..+.. +......+.|+++++||.|.......
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~ 292 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKL 292 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEG
T ss_pred HHhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccH
Confidence 222 56889999999842100000000 12222357899999999998764433
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-10 Score=78.84 Aligned_cols=119 Identities=19% Similarity=0.266 Sum_probs=65.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------CCccceeEEEE--ee--cCEEEEEEEcCCccc---------
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDM---------IPTVGFNMRKV--TK--GNVTIKLWDLGGQRR--------- 76 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~---------~~t~~~~~~~~--~~--~~~~~~~~d~~g~~~--------- 76 (184)
.++++++|++|+|||||++.+++...+... ..+.......+ .. -...++++|++|-..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 589999999999999999999853322110 01111011111 11 123678999987221
Q ss_pred -hhHh----HHhh--------------ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 77 -FRTM----WERY--------------CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 77 -~~~~----~~~~--------------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
.... .... +..+++.++++|.... .+......+...+.. .+++++++||+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK----VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh----cCcEEEEEeccccCCHH
Confidence 0000 0000 1235888999996422 233333333333333 28999999999998765
Q ss_pred CHHHH
Q 030000 138 SKQAL 142 (184)
Q Consensus 138 ~~~~~ 142 (184)
+....
T Consensus 157 e~~~~ 161 (270)
T 3sop_A 157 EKSEF 161 (270)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-11 Score=87.91 Aligned_cols=117 Identities=9% Similarity=0.006 Sum_probs=66.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC---------CCCCCccceeEEEEeecCEEEEEEEcCCccchh--------HhH
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYS---------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--------TMW 81 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~---------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~--------~~~ 81 (184)
..+|+++|.+|+|||||+|++++.... .....|.......+.. .+.++||||..... ...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 468999999999999999999875211 1111222222222211 27899999953321 111
Q ss_pred Hhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHH
Q 030000 82 ERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV 143 (184)
Q Consensus 82 ~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~ 143 (184)
... ....+.++++++....-....+. .+......+.|+++++||.|.......+...
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~-----~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~ 295 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLA-----RFDYVSGGRRAFTCHFSNRLTIHRTKLEKAD 295 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTE-----EEEEEESSSEEEEEEECTTSCEEEEEHHHHH
T ss_pred HHhccccccCceEEEEcCCCEEEEcceE-----EEEEecCCCceEEEEecCccccccccHHHHH
Confidence 121 35678889999873210000000 0112223578999999999987755444333
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.8e-10 Score=79.04 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=69.9
Q ss_pred EEEcCCcc-chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHh
Q 030000 68 LWDLGGQR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQL 146 (184)
Q Consensus 68 ~~d~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~ 146 (184)
+-..||+. .........+.++|+++.|+|+.++.+... ..+..++ .++|.++|+||+|+.+....+...+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34568876 556677778999999999999998876642 1222232 478999999999997643333444433
Q ss_pred CCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 147 GLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.. .+.+++.+||++|.|++++++.+.+.+.
T Consensus 76 ~~-----~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 EN-----QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HT-----TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred Hh-----cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 21 2236899999999999999998887764
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.4e-11 Score=85.64 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=67.1
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhC--CC
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLG--LE 149 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~--~~ 149 (184)
.+++|.+....+.+.++++++|+|+.++. ..|...+.+.. .++|+++|+||+|+.+... .++..+.+. ..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 47789999999999999999999998631 22222221111 3789999999999976432 222222111 00
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.......+++.+||++|.|++++++.+.+...
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 01111236899999999999999999977543
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-10 Score=82.91 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=67.5
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhC--CC
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLG--LE 149 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~--~~ 149 (184)
.+++|.+....+++.++++++|+|+.++.+ .....+...+ .+.|+++|+||+|+.+... .+...+.+. ..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 488899999998899999999999988652 1111112221 3789999999999976532 222222111 01
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
........++.+||++|.|++++++.+.+...
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 11112236899999999999999999987654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.85 E-value=5.6e-09 Score=73.13 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=35.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--CCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDM--IPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
...++|+++|.+|+|||||+|++.+.... ... ..|..... +.. +..+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcC
Confidence 45689999999999999999999976532 111 12322221 111 2358899999954
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.82 E-value=5.9e-10 Score=82.37 Aligned_cols=110 Identities=11% Similarity=0.066 Sum_probs=58.4
Q ss_pred cCEEEEEEEcCCccchhH----hHHh--hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCC-c-EEEEEeCCCc
Q 030000 62 GNVTIKLWDLGGQRRFRT----MWER--YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI-P-LLVLGNKIDK 133 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~----~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-iivv~nK~D~ 133 (184)
.++.+.++||||...... .... ....+|.+++|+|+.... . .......+ + ... | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~-~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q-AGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G-HHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H-HHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 567899999999654321 1111 123689999999986543 2 22222222 2 134 5 7889999998
Q ss_pred ccccC-HHHHHHHhCCCcc----------CCCceeEEEeeeccCCC-HHHHHHHHHHH
Q 030000 134 SEALS-KQALVDQLGLESI----------TDREVCCYMISCKDSIN-IDAVIDWLIKH 179 (184)
Q Consensus 134 ~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~-i~~l~~~i~~~ 179 (184)
..... ........+.... .....+...+|+..|.| +..+++.+.+.
T Consensus 251 ~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~ 308 (432)
T 2v3c_C 251 SAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDM 308 (432)
T ss_dssp CSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred ccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 54322 1223333322100 00122334567777777 66666555433
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.6e-09 Score=77.04 Aligned_cols=111 Identities=17% Similarity=0.177 Sum_probs=61.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc-----C-CCC----CCCCC-----------ccceeEEE-----------------Ee
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT-----G-GYS----EDMIP-----------TVGFNMRK-----------------VT 60 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~-----~-~~~----~~~~~-----------t~~~~~~~-----------------~~ 60 (184)
+..|+++|++|+||||++..+.. + +.. ..+.+ ..+..... ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999988862 1 100 00000 01111111 11
Q ss_pred ecCEEEEEEEcCCccchhH----hHH--hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 61 KGNVTIKLWDLGGQRRFRT----MWE--RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 61 ~~~~~~~~~d~~g~~~~~~----~~~--~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
..++.+.++||||...... ... .....+|.+++|+|+......... ...+... -.+..+|+||.|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~----~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA----TPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS----CTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh----CCCeEEEEECCCCc
Confidence 2348899999999432211 111 123357899999999764332222 2222222 23456889999985
Q ss_pred cc
Q 030000 135 EA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 253 ~~ 254 (443)
T 3dm5_A 253 AK 254 (443)
T ss_dssp SS
T ss_pred cc
Confidence 43
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.7e-09 Score=72.32 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecCEEEEEEEcCCccc
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~ 76 (184)
++++++|.+|+|||||+|++.+..... ..++.+.+. ..+. .+..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~-~~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFS-LENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEE-CTTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEE-eCCCEEEEECCCccc
Confidence 699999999999999999999765422 122222111 1111 123688999999654
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.72 E-value=9.2e-08 Score=73.84 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~ 43 (184)
.|+|+|+.|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999998754
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.8e-08 Score=74.69 Aligned_cols=69 Identities=25% Similarity=0.290 Sum_probs=46.1
Q ss_pred HHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CCccceeEEEE---eecCEEEEEEEcCCcc
Q 030000 6 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDM-----IPTVGFNMRKV---TKGNVTIKLWDLGGQR 75 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~-----~~t~~~~~~~~---~~~~~~~~~~d~~g~~ 75 (184)
.+.+.+... ..+..+|+|+|.+|+|||||+|++++....... ..|.+...+.. ...+..+.++||||..
T Consensus 26 eal~~L~~i-~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 26 EALKILSAI-TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp HHHHHHHTC-CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred HHHHHHHhc-cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 344555543 456788999999999999999999976632111 23444433322 2346789999999954
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.7e-08 Score=68.22 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=61.3
Q ss_pred cCCccc-hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC
Q 030000 71 LGGQRR-FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE 149 (184)
Q Consensus 71 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 149 (184)
.|||.. ........+.++|+++.|+|+.++.+..... +. . . ++|.++|+||+|+.+....+...+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~------l~-l-l-~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG------VD-F-S-RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT------SC-C-T-TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH------HH-h-c-CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 477663 4456777789999999999998876554211 11 1 1 7899999999999775433343443321
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
.+.++ .+||++|.|++++++.+.+
T Consensus 74 ----~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ----QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 12356 8999999999999887654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.1e-07 Score=68.71 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=39.9
Q ss_pred cCEEEEEEEcCCccc------hhHhHHh--hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCc
Q 030000 62 GNVTIKLWDLGGQRR------FRTMWER--YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~------~~~~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 133 (184)
.++.+.++||||... ....... .....+.+++|+|+............+... -.+..+++||.|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDG 250 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecccc
Confidence 367899999999533 1111111 122468999999997653333333333222 1346788999997
Q ss_pred cc
Q 030000 134 SE 135 (184)
Q Consensus 134 ~~ 135 (184)
..
T Consensus 251 ~a 252 (433)
T 3kl4_A 251 TA 252 (433)
T ss_dssp CS
T ss_pred cc
Confidence 54
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.28 E-value=4.1e-07 Score=64.12 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=40.6
Q ss_pred cCEEEEEEEcCCccc--hhH-hHH-----hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCC
Q 030000 62 GNVTIKLWDLGGQRR--FRT-MWE-----RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D 132 (184)
.++.+.++||||... ... ... .....+|.+++|+|+... .........+.. ..| ..+++||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 567899999999766 322 111 124468999999998643 222222222221 355 678899999
Q ss_pred ccc
Q 030000 133 KSE 135 (184)
Q Consensus 133 ~~~ 135 (184)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 753
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.27 E-value=3.4e-07 Score=64.70 Aligned_cols=85 Identities=18% Similarity=0.118 Sum_probs=56.7
Q ss_pred HhhccCCCEEEEEEeCCCCCC-HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC----HHHHHHHhCCCccCCCce
Q 030000 82 ERYCRGVSAILYVVDAADRDS-VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS----KQALVDQLGLESITDREV 156 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~ 156 (184)
...+.++|.+++|+|+.++.. ...+..++..... .++|.++|+||+|+.+... .+.+.+.+.. ..+
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~-----~g~ 151 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN-----IGY 151 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH-----HTC
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCchhhhHHHHHHHHHHHHh-----CCC
Confidence 346889999999999986543 3333444333322 4789999999999987533 2334443311 123
Q ss_pred eEEEeeeccCCCHHHHHHH
Q 030000 157 CCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 157 ~~~~~Sa~~~~~i~~l~~~ 175 (184)
+++.+|+++|.|++++++.
T Consensus 152 ~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CEEECCHHHHTTCTTTGGG
T ss_pred eEEEEecCCCCCHHHHHhh
Confidence 6899999999998877654
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.20 E-value=6e-06 Score=59.53 Aligned_cols=84 Identities=17% Similarity=0.105 Sum_probs=54.1
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCccCCCceeEEE
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
...++|.+++|.......+...+..++..... .++|.++|+||+|+.+... .+++...+. ..+++++.
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-----~~G~~v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-----NIGYRVLM 197 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHH-----TTTCCEEE
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHH-----hCCCcEEE
Confidence 36789999988665433334444444433222 3688899999999976543 222333322 23346899
Q ss_pred eeeccCCCHHHHHHHH
Q 030000 161 ISCKDSINIDAVIDWL 176 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i 176 (184)
+|+++|.|++++...+
T Consensus 198 ~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EecCCCcCHHHHHHhc
Confidence 9999999999887654
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.3e-06 Score=63.42 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=39.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC------------------CCCCC---CCCccceeEEEE-------eecCEEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG------------------GYSED---MIPTVGFNMRKV-------TKGNVTIKL 68 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~------------------~~~~~---~~~t~~~~~~~~-------~~~~~~~~~ 68 (184)
.+..-|.|+|++++|||||+|++++. .+... ...|.|+-.+.. +.....+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 45566789999999999999999852 23221 223555443321 123578999
Q ss_pred EEcCCccc
Q 030000 69 WDLGGQRR 76 (184)
Q Consensus 69 ~d~~g~~~ 76 (184)
+||+|...
T Consensus 145 lDTeG~~~ 152 (447)
T 3q5d_A 145 MDTQGTFD 152 (447)
T ss_dssp EEEECCCS
T ss_pred EcCCcccc
Confidence 99999543
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-06 Score=62.80 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.--++++|+.||||||+++.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999999999987
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=98.09 E-value=4.8e-07 Score=67.88 Aligned_cols=94 Identities=15% Similarity=0.172 Sum_probs=54.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----eecCEEEEEEEcCCcc--chhHhH--------
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQR--RFRTMW-------- 81 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~d~~g~~--~~~~~~-------- 81 (184)
...+..|+++|.+||||||+.+++...-. ....++..+....+ ........+||..|.+ +....+
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999873211 01112222111000 0111334578888873 233333
Q ss_pred HhhccCCCEEEEEEeCCCCCCHHHHHHHHH
Q 030000 82 ERYCRGVSAILYVVDAADRDSVPIARSELH 111 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 111 (184)
..++....+.++|+|.++. +...-..++.
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~ 143 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFN 143 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHH
Confidence 4456667888999999887 4544444433
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.02 E-value=4.8e-06 Score=55.62 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 4 LDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
++.+.+.+... .++...|+|+|++|||||||++.+.+
T Consensus 8 ~~~~~~~~~~~-~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPR-QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTT-CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44444444433 34567899999999999999998873
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.9e-06 Score=64.49 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.--++++|+.|||||||++.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHH
Confidence 4568899999999999999987
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.00 E-value=4.9e-06 Score=58.83 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.-.|+++|+.||||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3468899999999999999997
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.98 E-value=1.4e-05 Score=59.15 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=39.7
Q ss_pred cCEEEEEEEcCCccchhH-hHH-----hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcc
Q 030000 62 GNVTIKLWDLGGQRRFRT-MWE-----RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKS 134 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 134 (184)
.++.+.++||||...... ... .....++.+++|+|+.......... ..+ . ...+ .-+++||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~---~~f-~----~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTA---KAF-N----EALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHH---HHH-H----HHSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHH---HHH-h----ccCCCeEEEEecCCCC
Confidence 468899999999654321 111 1244688999999997554332222 222 1 1233 23689999975
Q ss_pred cc
Q 030000 135 EA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 254 ~~ 255 (433)
T 2xxa_A 254 AR 255 (433)
T ss_dssp SC
T ss_pred cc
Confidence 43
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.1e-05 Score=52.43 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=28.3
Q ss_pred HHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 5 DSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.+.++..++...+.-.++++|++|+|||||++.+.+
T Consensus 24 ~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 24 LTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4455556555555566789999999999999999874
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.91 E-value=6.6e-06 Score=53.61 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+++++|++|||||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.5e-05 Score=52.85 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=29.7
Q ss_pred hHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 3 FLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+++.+.+++......+...|+++|++||||||+++.+..
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455566666555445567899999999999999998863
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.79 E-value=1.4e-05 Score=59.01 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=37.2
Q ss_pred cCEEEEEEEcCCccchhH-hHH-----hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcc
Q 030000 62 GNVTIKLWDLGGQRRFRT-MWE-----RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKS 134 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 134 (184)
..+.+.++||||...... ... ...-.++.+++|+|+.... ........+.. ..+ .-+++||.|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~-----~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDE-----KVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHH-----HTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHh-----cCCceEEEEeCcCCc
Confidence 467899999999543221 111 1123588899999986432 22222222211 122 45678999964
Q ss_pred c
Q 030000 135 E 135 (184)
Q Consensus 135 ~ 135 (184)
.
T Consensus 251 ~ 251 (425)
T 2ffh_A 251 A 251 (425)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=1.4e-05 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++++|++|||||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999753
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.9e-05 Score=52.39 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.--++++|++|||||||++.+.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3346889999999999999999753
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=1.4e-05 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
-.++++|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4688999999999999999974
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0002 Score=47.37 Aligned_cols=70 Identities=10% Similarity=0.005 Sum_probs=47.0
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCccc
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~ 135 (184)
..+.+.++|+|+... ......+..+|.++++...+... .........+..... ..+.++.+|+|++|...
T Consensus 74 ~~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TTSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 358899999998652 33445566699999999986554 555555554433211 34567899999999543
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=1.6e-05 Score=51.35 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=18.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.--++++|++|||||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3457899999999999999654
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.71 E-value=5.2e-05 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=21.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..+...|+|+|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999998876
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.68 E-value=2.6e-05 Score=53.44 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999997
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.67 E-value=3e-05 Score=50.81 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.-.|+++|++||||||+++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456899999999999999999754
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.66 E-value=1.5e-05 Score=54.04 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=18.0
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...+.--++++|++||||||+++.+.
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 333444568999999999999999998
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.66 E-value=2.4e-05 Score=52.16 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.--++++|++|||||||++.+.+-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345789999999999999999753
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=2.8e-05 Score=52.38 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.--++|+|++|||||||++.+.+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 346789999999999999999854
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.62 E-value=2.5e-05 Score=52.55 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.-.++|+|++|||||||++.+.+.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3445789999999999999999753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.2e-05 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
=.++++|+.|||||||++.+.+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999999974
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.60 E-value=3.7e-05 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.--|+++|++|||||||++.|...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 345789999999999999999843
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=4.2e-05 Score=50.99 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+...|+++|+.|||||||++.+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999999999874
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.58 E-value=4e-05 Score=51.12 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.--|+++|++||||||+++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 345889999999999999999854
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.58 E-value=3.9e-05 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
.++++|+.|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999743
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.58 E-value=5.3e-05 Score=48.28 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
.+.-.++++|+.|||||||++.+.+.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444568899999999999999998644
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.57 E-value=4.4e-05 Score=49.99 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030000 22 LSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~ 42 (184)
|+|+||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999743
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.57 E-value=4.3e-05 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..|+++|++||||||+.+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.55 E-value=5.3e-05 Score=50.11 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=20.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+.-.|+++|++||||||+.+.+.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Confidence 344578999999999999999986
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.54 E-value=5.4e-05 Score=48.70 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 030000 20 MELSLIGLQNAGKTSLVNTI 39 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~ 39 (184)
.-|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.54 E-value=4.9e-05 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999843
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=5.4e-05 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
...|+++|++||||||+++.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999886
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.53 E-value=5.1e-05 Score=50.88 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
.++++|+.|||||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999743
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=6.1e-05 Score=51.55 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=21.9
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...+...|+++|+.|||||||++.+.+
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344566799999999999999999875
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.52 E-value=5e-05 Score=52.91 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999743
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.52 E-value=6.9e-05 Score=48.85 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|.+||||||+.+.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999986
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=5.9e-05 Score=49.27 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..+...|+++|.+||||||+.+.|..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999999864
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.52 E-value=5.6e-05 Score=50.60 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++|+++|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.52 E-value=5.1e-05 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999743
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.52 E-value=5.6e-05 Score=50.21 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+..-|+++|++||||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999974
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.52 E-value=5.4e-05 Score=50.19 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
...|+++|++||||||+++.+.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568999999999999999997543
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.51 E-value=5.5e-05 Score=49.53 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999999974
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=5.9e-05 Score=51.42 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
=.++++|+.|||||||++.+.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3678999999999999999974
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.51 E-value=5.5e-05 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 45789999999999999999753
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=5.4e-05 Score=48.65 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|+++|++||||||+.+.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999986
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=6.6e-05 Score=50.97 Aligned_cols=32 Identities=19% Similarity=0.097 Sum_probs=21.8
Q ss_pred HHHhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
...|+........|+++|.+||||||+.+.|.
T Consensus 6 ~~~p~~~~~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 6 AAEPVPESPKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp --------CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCCCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34455555566889999999999999999986
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=6.2e-05 Score=50.39 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++|+++|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=5.6e-05 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999743
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=7.3e-05 Score=48.40 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3588999999999999999974
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=6.6e-05 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999743
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.49 E-value=6.8e-05 Score=51.30 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.=.++++|+.|||||||++.+.+-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999743
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.48 E-value=6.4e-05 Score=49.77 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.|+++|++||||||+++.+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999863
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.48 E-value=7.1e-05 Score=50.75 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999743
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00017 Score=51.16 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=22.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..+..-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34567789999999999999999874
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.47 E-value=6.4e-05 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 35789999999999999999743
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.47 E-value=6.5e-05 Score=51.31 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999743
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.47 E-value=8.2e-05 Score=48.75 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|.+||||||+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44678999999999999999986
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.46 E-value=6.7e-05 Score=51.73 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999753
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.46 E-value=7.6e-05 Score=53.85 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGY 44 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~ 44 (184)
-.++++|++|+|||||+|.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3688999999999999999986543
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.46 E-value=9.1e-05 Score=50.65 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.++.+.|+++|++||||||+++.|.
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3467899999999999999999996
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00012 Score=52.07 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.+-|+++|++|||||||++.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999885
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.46 E-value=7e-05 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999999743
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.46 E-value=7.6e-05 Score=49.46 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+|+|+|.+||||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999975
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.45 E-value=6e-05 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999854
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.45 E-value=8.3e-05 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
....+.|+++|.+||||||+.+.|.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999986
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=7.2e-05 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999853
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=8.1e-05 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|.+||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.44 E-value=6.4e-05 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.++++|++|||||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999999875
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.44 E-value=7.8e-05 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999854
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.44 E-value=7.6e-05 Score=51.61 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.-.++|+|++|||||||++.+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4445689999999999999999874
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.44 E-value=8.1e-05 Score=51.44 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999753
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=8.4e-05 Score=52.46 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.4
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..++.=.++|+|++|||||||++.+.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 334556789999999999999999973
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=7.6e-05 Score=51.89 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999743
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.43 E-value=8.8e-05 Score=51.80 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999999743
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=8.4e-05 Score=48.00 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..|+++|++||||||+++.+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999863
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=9.6e-05 Score=49.24 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
+.|+++|+|||||+|....+.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999987
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0001 Score=48.77 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+...|++.|.+||||||+++.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999974
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.41 E-value=8.5e-05 Score=49.19 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...|+++|.+||||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999863
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=8.9e-05 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-|+++|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999974
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.41 E-value=8.5e-05 Score=51.13 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999743
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0001 Score=48.88 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.|+++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00013 Score=52.67 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=21.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..+.-.|+|+|++|||||||++.+.+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33444799999999999999999873
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.40 E-value=8.5e-05 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999999743
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00013 Score=48.27 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+...|+++|++||||||+++.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345678899999999999999886
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0001 Score=48.70 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.|++.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999863
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00023 Score=46.19 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..-.+++.|++|+|||++++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998874
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00012 Score=48.43 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=22.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.+...|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999754
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00011 Score=47.99 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
..|++.|.+||||||+++.|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999986
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0001 Score=48.74 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=21.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..+...|++.|.+||||||+.+.+.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3445678999999999999999886
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00012 Score=47.90 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|++.|.+||||||+++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=49.22 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++|++.|.+||||||+++.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999986
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00013 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.+.|+|.|.+||||||+++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00012 Score=47.49 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..++++|++|||||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4578999999999999999984
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00018 Score=47.67 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 4 LDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
++.+..++...+ +.-.+++.|++|+||||++.++.
T Consensus 45 ~~~l~~~~~~iP--kkn~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 45 LGALKSFLKGTP--KKNCLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp HHHHHHHHHTCT--TCSEEEEESCGGGCHHHHHHHHH
T ss_pred HHHHHHHHhcCC--cccEEEEECCCCCCHHHHHHHHH
Confidence 445555554432 23358999999999999888876
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~ 43 (184)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999997543
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00012 Score=48.04 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+...|+++|.+||||||+.+.|.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999886
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00013 Score=46.65 Aligned_cols=22 Identities=27% Similarity=0.532 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00014 Score=51.44 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
-.++++|++|||||||++.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 357899999999999999998544
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00064 Score=50.45 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=38.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh------------------cCCCCC---CCCCccceeEEE----E---eecCEEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA------------------TGGYSE---DMIPTVGFNMRK----V---TKGNVTIKLW 69 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~------------------~~~~~~---~~~~t~~~~~~~----~---~~~~~~~~~~ 69 (184)
+..-|.|+|+.++|||+|+|.++ ...|.. ....|.|+-.+. + +..+..+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 44556799999999999999665 123332 223477755543 1 2345789999
Q ss_pred EcCCcc
Q 030000 70 DLGGQR 75 (184)
Q Consensus 70 d~~g~~ 75 (184)
||.|..
T Consensus 146 DTEG~~ 151 (457)
T 4ido_A 146 DTQGTF 151 (457)
T ss_dssp EECCBT
T ss_pred eccCCC
Confidence 999943
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00014 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+...|+++|++||||||+++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999974
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00014 Score=47.62 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
...|++.|.+||||||+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999886
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0001 Score=47.79 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|.+||||||+.+.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34568999999999999999986
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=49.36 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.--++++|++|||||||++.+.+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999975
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00015 Score=48.22 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...|++.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00014 Score=48.50 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
++...|++.|.+||||||+++.|.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999999986
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=51.71 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
-.++++|++|+|||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999998
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=48.35 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|++.|.+||||||+++.|.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 45679999999999999999986
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=49.13 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|++.|.+||||||+++.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999999986
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00015 Score=47.27 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
...|+++|++||||||+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999999986
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00032 Score=46.31 Aligned_cols=22 Identities=41% Similarity=0.418 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999999874
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00013 Score=52.65 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++++|+.|||||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4689999999999999999853
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00014 Score=51.00 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35789999999999999999743
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00016 Score=49.67 Aligned_cols=25 Identities=20% Similarity=0.326 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=8.4e-05 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.=.++++|+.|||||||++.+.+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 34689999999999999999974
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.28 E-value=4.1e-05 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
-.++++|++|+|||||+|.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47899999999999999999854
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00014 Score=47.04 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
+|+++|++||||||+.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999986
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.28 E-value=6.7e-05 Score=48.48 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.++|+|++|||||||++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999997
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0002 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.+.|+++|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999985
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00012 Score=53.22 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.-+++|+|++|||||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999999743
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00016 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 35789999999999999999843
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00018 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+|+|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999997
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 34789999999999999999854
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00019 Score=48.72 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+.+.|++.|++||||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999886
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00017 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++++|+.|||||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 4689999999999999999853
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00029 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.431 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...-.+++.|++|+|||+++..+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999998874
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0002 Score=48.29 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
+.|++.|.+||||||+++.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999986
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00017 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++++|+.|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999999853
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00016 Score=47.57 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
....|++.|.+||||||+.+.+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999986
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0002 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...-|++.|++||||||+++.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999963
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00018 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 35689999999999999999853
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00022 Score=46.51 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|.+||||||+++.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 45678999999999999999986
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00014 Score=45.82 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.++++|++|+|||||++.+.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999974
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00016 Score=48.66 Aligned_cols=23 Identities=17% Similarity=0.344 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
....|+|+|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999986
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00022 Score=46.72 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00039 Score=51.31 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.=-++|+|++|||||||++.+.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 3334689999999999999999974
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00023 Score=49.15 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999863
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00024 Score=50.30 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+...|+|+|+.|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999999874
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00036 Score=48.56 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999974
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0002 Score=52.08 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++++|+.|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4689999999999999999854
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0002 Score=51.98 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 35689999999999999999853
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00019 Score=51.37 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
..-.++|+|++|||||||++.+.+-
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999853
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00016 Score=52.35 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=23.1
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
..++.-.++|+|++|||||||++.+.+-
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3445567999999999999999999843
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00029 Score=46.36 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+..|+++|..||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999999999863
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00031 Score=51.13 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.-.++|+|++||||||+++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445689999999999999999974
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00022 Score=49.11 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
-|+|+|++|||||||.+.+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 37899999999999999986
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0003 Score=45.27 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..++++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999973
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00026 Score=45.50 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|++.|.+||||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999886
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00018 Score=49.43 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
....|+++|++||||||+.+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999863
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00033 Score=45.38 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...|+++|.+||||||+.+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999864
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00057 Score=46.15 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..-.+++.|++|+|||++++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999863
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0063 Score=45.15 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=22.6
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
...+.+--|++.|+||+|||+|++++.
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 334455679999999999999999997
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00019 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=15.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
...|++.|.+||||||+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999986
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00027 Score=45.98 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|+++|.+||||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999886
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00026 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
=.++++|+.|||||||++.+.+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 3578999999999999999984
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00028 Score=48.40 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-++++|++|+|||||++.+.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999974
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0003 Score=45.69 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-.+|+|+.|||||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999863
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00034 Score=48.90 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.+.|+|+|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45779999999999999999986
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00016 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 35789999999999999999853
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00034 Score=45.67 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
..|++.|.+||||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999986
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00022 Score=53.99 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
..-.++|+|++||||||+++.+.+-
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3345999999999999999999853
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00063 Score=42.52 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=25.8
Q ss_pred HHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 6 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.+.+.+.... .....|++.|++|+|||++++.+...
T Consensus 12 ~~~~~~~~~a-~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 12 QYRRRLQQLS-ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHT-TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3444443332 34567999999999999999999743
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00027 Score=47.84 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.+..-|++.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567899999999999999998753
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00037 Score=44.59 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|++.|.+||||||+.+.|.
T Consensus 9 ~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999886
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00011 Score=49.05 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
-|+|.|.+||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999986
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00075 Score=47.80 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=25.5
Q ss_pred HHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 6 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.+++........-.+++.|++|+|||+|+..+..
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 344444443322356899999999999999998873
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00068 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=20.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+..-|+++|.+||||||+++.+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 445678999999999999999886
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00034 Score=47.07 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
--++++|++|+|||||+..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 357889999999999999997
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00075 Score=44.84 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999873
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00047 Score=46.24 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=18.1
Q ss_pred eE-EEEEcCCCCCHHHHHHHHh
Q 030000 20 ME-LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~-i~v~G~~~~GKstli~~~~ 40 (184)
.| |+++|+|||||+|.+..+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 44 5689999999999999886
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00041 Score=49.01 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.--++++|+.||||||+++.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 3467899999999999999987
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00078 Score=46.70 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
......+++.|++|+|||+++..+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 45567899999999999999999974
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0003 Score=52.61 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=22.6
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...+.-.++|+|+.|||||||++.+.+
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344556799999999999999999974
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00016 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999999854
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.003 Score=42.04 Aligned_cols=68 Identities=9% Similarity=-0.045 Sum_probs=44.5
Q ss_pred cCEEEEEEEcCCc-cchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 62 GNVTIKLWDLGGQ-RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 62 ~~~~~~~~d~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
..+.+.++|+|+. ... .....+..+|.++++...+ ..+.......+..+.... +.++.+++|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 4578999999986 433 2344567799999999875 334444444444443211 466889999998654
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.014 Score=40.24 Aligned_cols=66 Identities=8% Similarity=-0.050 Sum_probs=44.3
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCC
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 132 (184)
..+.+.++|+|+... ......+..+|.+++++..+ ..+..........+ .... .+.++.+|+|+.+
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l-~~~~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFV-RKLN-LFLPIFLIITRFK 208 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHH-HTTT-CCCCEEEEEEEEC
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHH-HHHh-ccCCEEEEEeccc
Confidence 347899999998543 23455566799999999975 44555555544444 3322 3467889999994
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00042 Score=48.28 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-++++|++|+|||||++.+.+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 389999999999999999974
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00066 Score=47.33 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.....+++.|++|+|||++++.+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999999974
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00093 Score=48.06 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhh-ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 4 LDSILNWLRSLF-FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+.+.+.+.... .....+|+++|++|+||||+.+.+.
T Consensus 8 ~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 8 ADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp HHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHH
Confidence 444445554332 2344679999999999999998776
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0005 Score=46.43 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+++++++|++||||||+...+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 46899999999999999999886
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00038 Score=49.87 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
-.+++.|++|+|||||++.+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999999974
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00045 Score=43.51 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3688999999999999986
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00069 Score=47.78 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...-.|++.|++|+|||++++.+..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 3445699999999999999999974
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00045 Score=48.54 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.-+++.|++|+|||+|++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677889999999999999973
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00059 Score=46.18 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+..-|++.|++||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999999863
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00068 Score=49.27 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.++|.|++|+||||+++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0031 Score=44.82 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..+.-.+.+.|++|+|||++++.++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999973
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00051 Score=49.48 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=23.9
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
...+.=+++++|+.|+|||||++.+.+..
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455689999999999999999998653
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0005 Score=48.30 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
--++|+|++|+|||||+..+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999998873
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00056 Score=45.67 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.--++++|++|+|||||+..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999985
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00055 Score=47.04 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...+++.|++|+||||+++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34699999999999999999974
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0014 Score=44.11 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
--+++.|++|+||||+++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999873
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00063 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.--++++|+.||||||++..+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 3467899999999999999987
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00058 Score=48.60 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++|+|..|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4579999999999999999854
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00057 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.-.|+++|++||||||+.+.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999986
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00062 Score=42.47 Aligned_cols=35 Identities=9% Similarity=0.029 Sum_probs=25.0
Q ss_pred HHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 6 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.+.+.... .....|++.|++|+|||++++.+..
T Consensus 15 ~l~~~~~~~~-~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 15 EMNREVEAAA-KRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp HHHHHHHHHH-TCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred HHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHH
Confidence 3444444332 3446799999999999999998863
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00062 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.--++++|++|+|||||+..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 334578999999999999999986
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0015 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
....+++.|++|+|||++++.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 44579999999999999998665
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.001 Score=49.22 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+.+--|++.|+||+|||+|++++.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHH
Confidence 3444569999999999999999997
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00074 Score=47.49 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..|+++|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999974
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.047 Score=38.16 Aligned_cols=67 Identities=18% Similarity=0.007 Sum_probs=42.0
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
.+.+.++|+|+..... ........+|.+++|+.... .+..........+... . ...+=+|+|++|..
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~-g--~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQN-G--IPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHT-T--CCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhC-C--CCEEEEEEcCcccc
Confidence 3679999999864322 12334566999999999763 3555555555544332 1 22345778999853
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00096 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00066 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.=.++++|+.|||||||++.+.+
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 34689999999999999999974
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00083 Score=49.75 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=23.4
Q ss_pred hhhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 13 SLFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
......+--|++.|+||+|||+|++++.+
T Consensus 209 ~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 209 DMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp HHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred hCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 33344566799999999999999999973
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00064 Score=51.00 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
-.++++|+.|||||||++.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHh
Confidence 457899999999999999997
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00084 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|.+||||||+.+.+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999886
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0015 Score=44.83 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
....|++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999974
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00074 Score=50.20 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=23.7
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
...+.=+++++|++|||||||++.+.+..
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34455689999999999999999998543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00096 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++++|+.|||||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999999854
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00039 Score=48.81 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=17.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.+-|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998863
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00098 Score=48.53 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445789999999999999999974
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0012 Score=50.99 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.=.++++|+.|||||||++.+.+-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3346889999999999999999743
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00087 Score=48.65 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
.+|+|+.|||||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999999987
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00086 Score=46.71 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
--++|+|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999999874
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00099 Score=44.05 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|++.|.+||||||+.+.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0012 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
.++++|+.|||||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999999853
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0012 Score=48.34 Aligned_cols=30 Identities=33% Similarity=0.369 Sum_probs=23.7
Q ss_pred HhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 11 LRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 11 ~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+..+..+.+--|++.|+||+|||+|++++.
T Consensus 174 f~~~gi~~prGvLL~GPPGTGKTllAkAiA 203 (405)
T 4b4t_J 174 FESLGIAQPKGVILYGPPGTGKTLLARAVA 203 (405)
T ss_dssp HHHHTCCCCCCEEEESCSSSSHHHHHHHHH
T ss_pred HHhCCCCCCCceEEeCCCCCCHHHHHHHHH
Confidence 333344455679999999999999999997
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00076 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.=.++++|+.|||||||++.+.+
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 34789999999999999999974
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0024 Score=44.98 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.-.|+++|+.|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999886
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00099 Score=46.73 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 46799999999999999999974
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0015 Score=49.86 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
=.++|+|+.|||||||++.+.+-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998643
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0013 Score=50.16 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
.++++|+.|||||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999854
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0018 Score=46.41 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
+++.|++|+||||+++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999873
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0026 Score=46.16 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=25.2
Q ss_pred HHHHHHhhhh-ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 6 SILNWLRSLF-FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 6 ~~~~~~~~~~-~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.+++.... ....-.+++.|++|+|||++++.+..
T Consensus 31 ~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 31 DAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3444444332 22345789999999999999999974
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.002 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
....|++.|++|+|||++++.+..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 345689999999999999999963
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0016 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 35789999999999999999753
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0012 Score=43.47 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
...|+++|++|+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999743
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=48.99 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...-|+++|.+||||||+.+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999973
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0024 Score=45.77 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.+++.|++|+||||+++.+.+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999874
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0014 Score=42.58 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030000 22 LSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~ 42 (184)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999844
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0013 Score=44.66 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
--+++.|++|+|||||+..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999987775
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00087 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.=.++++|+.|||||||++.+.+
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999874
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0019 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~ 43 (184)
.++++|+.|||||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998643
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0018 Score=48.14 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=24.2
Q ss_pred HhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 11 LRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 11 ~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+..+..+.+--|++.|+||+|||+|++++.
T Consensus 235 f~~~Gi~pprGILLyGPPGTGKTlLAkAiA 264 (467)
T 4b4t_H 235 FATLGIDPPKGILLYGPPGTGKTLCARAVA 264 (467)
T ss_dssp HHHHTCCCCSEEEECSCTTSSHHHHHHHHH
T ss_pred HHHCCCCCCCceEeeCCCCCcHHHHHHHHH
Confidence 333444566779999999999999999997
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=47.42 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.--+.|+|++|||||||+..+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3345789999999999999999854
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0027 Score=47.69 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...-.++++|++|+|||++++.+..
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999998863
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00064 Score=52.37 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 344788999999999999998874
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0014 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
-.+++.|++|+|||||++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999874
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0015 Score=46.48 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
..|+|+|++|||||||...+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999887
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0014 Score=46.88 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
.-|+|+|++|||||||...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHH
Confidence 468999999999999999887
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.002 Score=46.31 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998875
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00097 Score=46.03 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
++...|++.|..||||||+++.|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 455779999999999999999886
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0014 Score=43.86 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.|+++|.+||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998863
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0017 Score=43.03 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 3588999999999999885
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0019 Score=43.94 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-|++.|..||||||+++.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999873
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0016 Score=46.11 Aligned_cols=21 Identities=24% Similarity=0.533 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
--|+++|++||||||++..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 457899999999999999887
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0021 Score=49.82 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 030000 22 LSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~ 43 (184)
++++|+.|||||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999998643
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.019 Score=39.80 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=41.8
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDK 133 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~ 133 (184)
+.+.++|+|+..... ........+|.+++|+... ..+..........+.. .+.+++ +|+|+.|.
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~-~~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSE-NNNKDEVKKGKELIEA----TGAKLLGVVLNRMPK 256 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETT-SCCHHHHHHHHHHHHT----TTCEEEEEEEEEECC
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCC-CCcHHHHHHHHHHHHh----CCCCEEEEEEeCCcC
Confidence 678999999854321 1122334589999999975 4466666665554432 356666 88999985
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.002 Score=47.49 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=22.6
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.....+--|++.|+||+|||+|++++.
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHH
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHH
Confidence 334455679999999999999999997
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00087 Score=46.29 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..+++.|++|+|||++++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999999974
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0017 Score=47.00 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999874
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0016 Score=49.55 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=18.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHH
Q 030000 19 EMELSLIGLQNAGKTSLVNTI 39 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~ 39 (184)
.--++|+|++|||||||++.+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 345789999999999999995
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.002 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGY 44 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~ 44 (184)
=.++++|+.|||||||++.+.++..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4679999999999999999986543
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0019 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999973
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0023 Score=45.09 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999873
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0021 Score=45.48 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-|+|+|++|||||||...+..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 478999999999999999973
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0038 Score=42.98 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
....|++.|++|+|||++++.+...
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3467999999999999999999743
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.004 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.361 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0019 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.|++.|++|+|||+|++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999999974
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0031 Score=45.68 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...-.+++.|++|+||||+++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3445789999999999999999973
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.005 Score=42.52 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
-.|++.|++|+|||.|+..+..
T Consensus 105 n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3599999999999999999974
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 184 | ||||
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-32 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 3e-29 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 9e-29 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 2e-28 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 4e-27 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 8e-26 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-24 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 3e-24 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 3e-24 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 9e-24 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 1e-23 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 5e-22 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 1e-21 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 1e-20 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 3e-20 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 3e-20 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 1e-19 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 4e-19 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 6e-19 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-18 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 3e-18 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 3e-17 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 4e-17 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 6e-17 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 8e-17 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 1e-16 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 3e-16 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 7e-16 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 2e-15 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 3e-15 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 3e-15 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 2e-14 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 5e-14 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 2e-13 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 3e-13 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 4e-13 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 8e-13 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 1e-12 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 2e-12 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 4e-12 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 8e-12 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 1e-11 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 1e-11 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 2e-11 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 1e-10 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 2e-10 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 3e-10 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 4e-10 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 7e-10 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 1e-09 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 5e-09 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 1e-08 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 8e-08 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 9e-08 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 1e-07 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 1e-06 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 2e-06 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 3e-06 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 2e-05 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 2e-05 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 4e-05 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 8e-05 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 1e-04 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 1e-04 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 2e-04 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 4e-04 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 0.001 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 0.001 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 0.002 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 112 bits (280), Expect = 2e-32
Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 1/173 (0%)
Query: 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKL 68
L +F +EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +
Sbjct: 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVGFNVETVTYKNVKFNV 60
Query: 69 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 128
WD+GGQ + R +W Y G +++VVD ADRD + AR ELH ++ + +L+
Sbjct: 61 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 120
Query: 129 NKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181
NK D +A+ + ++LGL I DR + + WL + K
Sbjct: 121 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 104 bits (259), Expect = 3e-29
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 6/178 (3%)
Query: 9 NWLRSLFF-----KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN 63
N S+F +E+ + ++GL AGKT+++ + G PT+GFN+ ++ N
Sbjct: 2 NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRL-QIGEVVTTKPTIGFNVETLSYKN 60
Query: 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP 123
+ + +WDLGGQ R W Y +A+++VVD+ D+D + A ELH +L + L
Sbjct: 61 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 120
Query: 124 LLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181
LLV NK D+ ALS + +L L + DR S I +DWLI K
Sbjct: 121 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 178
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 103 bits (256), Expect = 9e-29
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 1/175 (0%)
Query: 7 ILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTI 66
+ + LF QE ++ ++GL NAGKT+++ + PT+G N+ ++ N
Sbjct: 3 LFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINNTRF 61
Query: 67 KLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 126
+WD+GGQ R+ W Y ++ VVD+ DR+ + + R EL+++L L LL+
Sbjct: 62 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 121
Query: 127 LGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181
NK D E ++ + L L SI D + + ++W++ K
Sbjct: 122 FANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 101 bits (252), Expect = 2e-28
Identities = 106/164 (64%), Positives = 137/164 (83%)
Query: 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77
+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQ RF
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137
R+MWERYCRGVSAI+Y+VDAAD++ + +++ELH LL KP L GIP+LVLGNK D AL
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120
Query: 138 SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181
++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK
Sbjct: 121 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 98.9 bits (245), Expect = 4e-27
Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 3/175 (1%)
Query: 7 ILNWLRSLF--FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNV 64
+L+ LR L QE+ + L+GL NAGKT+L+ + + PT GFN++ V
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQL-ASEDISHITPTQGFNIKSVQSQGF 60
Query: 65 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPL 124
+ +WD+GGQR+ R W Y ++YV+D+ADR EL ELL + LS +P+
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120
Query: 125 LVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
L+ NK D A + + L L +I DR S + ++W+ K+
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 95.2 bits (236), Expect = 8e-26
Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 8/162 (4%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 79
LIG GKT ++ + ++ I T+G + + ++ + +++WD GQ RFRT
Sbjct: 11 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 70
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y RG I+ V D + S R+ + + S +++ +
Sbjct: 71 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS 130
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181
+ + G + D + S K +IN++ L + K
Sbjct: 131 K----ERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 168
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 92.4 bits (228), Expect = 1e-24
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 1/163 (0%)
Query: 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78
E+ L ++GL NAGKT+++ G + + PT+GFN++ + + +WD+GGQ+ R
Sbjct: 2 ELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138
+ W Y +++VVD+ADR + + EL LL++ L+G LL+ NK D ALS
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 139 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181
A+ + L L+SI S ++ IDWL+
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 163
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 91.3 bits (225), Expect = 3e-24
Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Query: 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 79
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+W Y + +++VVD+ DR+ V AR EL +L + L LLV NK D A++
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
+ D+LGL S+ R + +DWL
Sbjct: 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 91.0 bits (225), Expect = 3e-24
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQR 75
M++ LIG GK+ L+ ++ I T+G + + + V +++WD GQ
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
RFRT+ Y RG I+ V D D + + + + + + LL++GNK D
Sbjct: 63 RFRTITTAYYRGAMGIILVYDITDERT-FTNIKQWFKTVNEHANDEAQLLLVGNKSD--- 118
Query: 136 ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ + + G + + S K+ N++ + L K
Sbjct: 119 -METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 160
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 90.5 bits (223), Expect = 9e-24
Identities = 51/186 (27%), Positives = 96/186 (51%), Gaps = 15/186 (8%)
Query: 6 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVT 65
S+L +L +K+ +L +GL NAGKT+L++ + +PT+ ++T +T
Sbjct: 2 SVLQFLG--LYKKTGKLVFLGLDNAGKTTLLHML-KDDRLGQHVPTLHPTSEELTIAGMT 58
Query: 66 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL 125
+DLGG + R +W+ Y ++ I+++VD AD + + ++ EL L+ +++ +P+L
Sbjct: 59 FTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPIL 118
Query: 126 VLGNKIDKSEALSKQALVDQLGLESIT------------DREVCCYMISCKDSINIDAVI 173
+LGNKID+ EA+S++ L + GL T R + +M S
Sbjct: 119 ILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 178
Query: 174 DWLIKH 179
W+ ++
Sbjct: 179 RWMAQY 184
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 89.8 bits (221), Expect = 1e-23
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER 83
+GL NAGKT+L++ + + PT ++ GN+ +DLGG + R +W+
Sbjct: 5 FLGLDNAGKTTLLHML-KNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 63
Query: 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV 143
Y V+ I+++VDAAD + AR EL L L +P ++LGNKID A+S+ L
Sbjct: 64 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELR 123
Query: 144 DQLGLESIT-------DREVCCYMISCKDSINIDAVIDWLIKH 179
LGL + T R V +M S WL ++
Sbjct: 124 SALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 166
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 86.1 bits (212), Expect = 5e-22
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 79
LIG GK+ L+ + Y+ D I T+G + + ++ V +++WD GQ RFRT
Sbjct: 11 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT 70
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y RG I+ V D D++S + + + + S + L++GNK D +
Sbjct: 71 ITSSYYRGSHGIIIVYDVTDQES-FNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVV 129
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ + E ++ S DS N++ + +
Sbjct: 130 EY---DVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 165
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.5 bits (208), Expect = 1e-21
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
Query: 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQ 74
+++ +IG GK+SL+ + ++ T+G + + V + +WD GQ
Sbjct: 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66
Query: 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134
RFRT+ Y RG ++ V D RD+ + L+EL + + I +++GNKIDK
Sbjct: 67 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK- 125
Query: 135 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ + GL+ + S K + + L++
Sbjct: 126 ---ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVE 166
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.8 bits (201), Expect = 1e-20
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 79
LIG GKT LV G + T+G + ++ V +++WD GQ RFR+
Sbjct: 10 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS 69
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ + Y R +A++ D +S L E+ S I +LV
Sbjct: 70 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVS 129
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
Q Q E +++ S K+S N++ + L
Sbjct: 130 Q----QRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 164
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.1 bits (199), Expect = 3e-20
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 8/160 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 79
LIG GK++L++ ++ + T+G +V + ++WD GQ R+R
Sbjct: 9 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR 68
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y RG L V D A + L EL S I ++++GNK D
Sbjct: 69 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRH---L 124
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
+A+ + S DS N++ ++
Sbjct: 125 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 164
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 80.7 bits (198), Expect = 3e-20
Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 79
+IG + GKTS + A ++ + TVG + + + +++WD GQ R+RT
Sbjct: 10 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRT 69
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y RG + + D + +S + + + + +K + +
Sbjct: 70 ITTAYYRGAMGFILMYDITNEESFN----AVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ + + G + + S KD+IN+ + L+
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 164
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.2 bits (197), Expect = 1e-19
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 75
++ L L+G +GK+++V + ++ T G K V ++D+GGQR
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRIL----HVVLTSGIFETKFQVDKVNFHMFDVGGQR 58
Query: 76 RFRTMWERYCRGVSAILYVVDAADRDSVPI----------ARSELHELLMKPSLSGIPLL 125
R W + V+AI++VV ++ + V A + + L I ++
Sbjct: 59 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 118
Query: 126 VLGNKIDKSEA 136
+ NK D
Sbjct: 119 LFLNKQDLLAE 129
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.0 bits (191), Expect = 4e-19
Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 9/160 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-----VTKGNVTIKLWDLGGQRRFR 78
L+G GKT L+ G + + + V V +++WD GQ RFR
Sbjct: 11 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR 70
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138
++ Y R A+L + D ++ S ++ L E+ +L+ E +
Sbjct: 71 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVV 130
Query: 139 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
K+ + G + + + S K +N+D + K
Sbjct: 131 KR----EDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 166
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.0 bits (191), Expect = 6e-19
Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 17/170 (10%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT--------------KGNVTIKLW 69
+G GKT+ + ++ I TVG + R+ V ++LW
Sbjct: 10 ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLW 69
Query: 70 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129
D GQ RFR++ + R L + D + S R+ + +L ++++GN
Sbjct: 70 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 129
Query: 130 KIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
K D + ++ + ++ E + + S N++ ++ L+
Sbjct: 130 KADLPD---QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 176
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 76.3 bits (186), Expect = 2e-18
Identities = 56/163 (34%), Positives = 91/163 (55%), Gaps = 1/163 (0%)
Query: 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78
EM + ++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGG R
Sbjct: 5 EMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138
W Y A++YVVD+ DRD + I++SEL +L + L L+V NK D +A++
Sbjct: 64 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 123
Query: 139 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181
+ + LGL ++ DR+ + S +D ++WL++ K
Sbjct: 124 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 166
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.3 bits (184), Expect = 3e-18
Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 79
+IG GK+ L++ + D T+G +V+ + +++WD GQ RFR
Sbjct: 9 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 68
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y RG + L V D R + S + ++++GNK D +
Sbjct: 69 VTRSYYRGAAGALMVYDITRRSTYNHLSSW-LTDARNLTNPNTVIILIGNKADLEA---Q 124
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ + + + + + S K N++ K
Sbjct: 125 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 163
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.0 bits (178), Expect = 3e-17
Identities = 28/164 (17%), Positives = 66/164 (40%), Gaps = 6/164 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV---TKGNVTIKLWDLGGQ 74
+E ++ ++G GK++L TG + E PT+ RK +++ D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134
+F +M + Y + + V ++ S + +++ +P++++GNK+D
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 135 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
++ + G + S K +D + +++
Sbjct: 122 S---EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.0 bits (178), Expect = 4e-17
Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRT 79
+IG GK+ L+ + T+G + + +++WD GQ FR+
Sbjct: 8 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 67
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y RG + L V D R++ S L + S S + ++++GNK D +
Sbjct: 68 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLES---R 123
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ + + G + + S K + N++ K
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 162
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.0 bits (178), Expect = 6e-17
Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 35/193 (18%)
Query: 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78
E++L L+G +GK++ + + +PT G +V ++ D+GGQR R
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRII--HGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPI----------ARSELHELLMKPSLSGIPLLVLG 128
W V++I+++V ++ D V + +++ ++ P +++
Sbjct: 60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119
Query: 129 N-KIDKSEALSKQALVDQ----------------------LGLESITDREVCCYMISCKD 165
N K E + LVD + L +D+ + + D
Sbjct: 120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 179
Query: 166 SINIDAVIDWLIK 178
+ NI V +
Sbjct: 180 TENIRFVFAAVKD 192
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.3 bits (176), Expect = 8e-17
Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 38/193 (19%)
Query: 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78
E++L L+G +GK+++V G T ++ K++D+GGQR R
Sbjct: 2 EVKLLLLGAGESGKSTIVKQ-----MKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIAR----------SELHELLMKPSLSGIPLLVLG 128
W GV+AI++ V +D D V + + +++
Sbjct: 57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116
Query: 129 N-KIDKSEALSKQALVDQLGLE----------------------SITDREVCCYMISCKD 165
N K E + K L +E+ + D
Sbjct: 117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATD 176
Query: 166 SINIDAVIDWLIK 178
+ N+ V D +
Sbjct: 177 TKNVQFVFDAVTD 189
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.5 bits (174), Expect = 1e-16
Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRT 79
+IG GK+ L++ + +D T+G V +++WD GQ RFR+
Sbjct: 10 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 69
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y RG + L V D R++ + + I +++ GNK D
Sbjct: 70 VTRSYYRGAAGALLVYDITSRETYNALTNW-LTDARMLASQNIVIILCGNKKDLDADREV 128
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
L + E+ S N++ +
Sbjct: 129 TFLEAS---RFAQENELMFLETSALTGENVEEAFVQCAR 164
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.5 bits (171), Expect = 3e-16
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 5/163 (3%)
Query: 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQR 75
++L L+G GK+S+V + ++E+ PT+G V ++WD GQ
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
RF ++ Y R A L V D S AR + E L + + I + ++GNKID +
Sbjct: 64 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDMLQ 122
Query: 136 ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
++ + + G + ++ + + S K N++ V + +
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.6 bits (169), Expect = 7e-16
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 14/174 (8%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN----MRKVTKGNVTIK 67
+S FK + L+G GK+SL+N T + + T+G +V VT++
Sbjct: 3 KSSLFK----VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 58
Query: 68 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLM---KPSLSGIPL 124
+WD GQ RFR++ + RG L D S + E + P
Sbjct: 59 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 118
Query: 125 LVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
++LGNKID SE ++ + + S KD+ N+ A + ++
Sbjct: 119 VILGNKIDISERQVSTEEAQAWCRDN---GDYPYFETSAKDATNVAAAFEEAVR 169
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.4 bits (166), Expect = 2e-15
Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 37/185 (20%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER 83
L+G +GK++ + + PT G + NV K+ D+GGQR R W
Sbjct: 7 LLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFE 63
Query: 84 YCRGVSAILYVVDAADRDSV----------PIARSELHELLMKPSLSGIPLLVLGN-KID 132
V++IL++V +++ D V + + ++ S + +++ N
Sbjct: 64 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 123
Query: 133 KSEALSKQALVDQLG-----------------------LESITDREVCCYMISCKDSINI 169
E + ++ D R + + + ++ NI
Sbjct: 124 LEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENI 183
Query: 170 DAVID 174
V
Sbjct: 184 RLVFR 188
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.7 bits (164), Expect = 3e-15
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 8/160 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG----FNMRKVTKGNVTIKLWDLGGQRRFRT 79
L+G GK+SLV G + E T+G + V ++WD GQ R+ +
Sbjct: 11 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y RG A + V D + +S A++ + EL + S I + + GNK D + +
Sbjct: 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAV 129
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
Q + D + S K S+N++ + + K
Sbjct: 130 DFQEAQSYAD---DNSLLFMETSAKTSMNVNEIFMAIAKK 166
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.7 bits (164), Expect = 3e-15
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQRRFRT 79
+G Q+ GKTSL+ + T+G + T + ++LWD GQ RFR+
Sbjct: 5 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRS 64
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y R +A + V D + +S + ++ + S + ++++GNK D ++ K
Sbjct: 65 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLAD---K 120
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ + + G + V S K N+ + +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 159
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.6 bits (161), Expect = 2e-14
Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 8/156 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL----GGQRRFRT 79
+GL ++GKT L + TG Y + ++ + N L G +
Sbjct: 5 FVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQ 63
Query: 80 MWERYCRGVSAILYVVDAADRDS-VPIARSELHELLMKPSLS--GIPLLVLGNKIDKSEA 136
+ +R+ A+++VVD+A V L+++L+ LL+ NK D + A
Sbjct: 64 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 123
Query: 137 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172
S + + QL E T R S DS +
Sbjct: 124 KSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPA 159
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 64.2 bits (155), Expect = 5e-14
Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 6/161 (3%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTM 80
++G GK++L + ED PT + RK + V I + D GQ + +
Sbjct: 9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 68
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140
+ Y R L V + +S ++L +P L++GNK D +
Sbjct: 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 128
Query: 141 ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181
+ + V S K N+D V L++ +
Sbjct: 129 VEEAKNRADQW---NVNYVETSAKTRANVDKVFFDLMREIR 166
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.8 bits (151), Expect = 2e-13
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQRRFR 78
++G GKTSL++ YS+ T+G + T+++WD GQ RF+
Sbjct: 7 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ 66
Query: 79 TMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
++ + RG + V D + S + R E S P ++LGNKID E
Sbjct: 67 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 126
Query: 136 ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ + L + ++ ++ S K++IN+D + + +
Sbjct: 127 SKKIVSEKSAQELAK-SLGDIPLFLTSAKNAINVDTAFEEIAR 168
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.3 bits (150), Expect = 3e-13
Identities = 25/164 (15%), Positives = 58/164 (35%), Gaps = 7/164 (4%)
Query: 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG---FNMRKVTKGNVTIKLWDLGGQ 74
E +L ++G GK++L + + ++ PT+ + + + D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134
+ M ++Y R L V + S ++ +P++++GNK D +
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 135 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ + + + S K ++ L++
Sbjct: 122 ARTVES----RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.4 bits (150), Expect = 4e-13
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 10/163 (6%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG----FNMRKVTKGNVTIKLWDLGGQRRFRT 79
++G GKTSL+N +S T+G V VT+++WD GQ RF++
Sbjct: 7 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS 66
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLM---KPSLSGIPLLVLGNKIDKSEA 136
+ + RG + V D ++ S E L+ P +VLGNKID
Sbjct: 67 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 126
Query: 137 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
+ + S K++IN++ + ++
Sbjct: 127 QVATKRAQAWCYS---KNNIPYFETSAKEAINVEQAFQTIARN 166
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.6 bits (148), Expect = 8e-13
Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 14/174 (8%)
Query: 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ + T + + IPTV N V + LWD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID-- 132
+ + L S R++ + + P++++G K+D
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 122
Query: 133 -------KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 178
K + + GL + Y+ S + V D I+
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.7 bits (146), Expect = 1e-12
Identities = 35/159 (22%), Positives = 55/159 (34%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQRRFRT 79
L+G GKTSLV +++ I T+G + V + +WD GQ RF
Sbjct: 8 LLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA 67
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ Y R + + V D D DS ++ + EL +V + E
Sbjct: 68 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS 127
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ Y S K + I+ + L K
Sbjct: 128 IQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCK 162
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.4 bits (145), Expect = 2e-12
Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 5/164 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQ 74
+E +L ++G GK++L G + E PT+ + RK + +++ D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134
+F M + Y + V + + + ++L +P++++GNK D
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 135 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ Q + S K IN++ + L++
Sbjct: 122 DERVVGKEQGQNLARQWCN--CAFLESSAKSKINVNEIFYDLVR 163
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.0 bits (144), Expect = 4e-12
Identities = 30/166 (18%), Positives = 49/166 (29%), Gaps = 15/166 (9%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER 83
+ G QN+GKTSL+ + T + + L D G + R
Sbjct: 8 IAGPQNSGKTSLLTLLTTDSVRP--TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 84 Y-----CRGVSAILYVVDAADRDSVPIARSELHEL---LMKPSLSGIPLLVLGNKIDKSE 135
Y I V D + L ++ +GI +L+ NK +
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 125
Query: 136 ALSKQALVDQLGLESITDRE-----VCCYMISCKDSINIDAVIDWL 176
A + D L E E + + + +D L
Sbjct: 126 ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVL 171
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.8 bits (141), Expect = 8e-12
Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 14/168 (8%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQRRFRTM 80
++G GKT L+ + A + E+ +PTV + + L+D GQ + +
Sbjct: 14 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 73
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140
L + S E +K +P L++G +ID +
Sbjct: 74 RPLSYPMTDVFLICFSVVNPASF-QNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTL 132
Query: 141 ALVDQLGLESITDRE---------VCCYM-ISCKDSINIDAVIDWLIK 178
A ++ + + I + CCY+ S + V D I
Sbjct: 133 ARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 180
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (140), Expect = 1e-11
Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTM 80
++G GK++L + D PT+ + K+ + + + D GQ F M
Sbjct: 11 VVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM 70
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140
E+Y R L V DR S ++L P++++GNK D L Q
Sbjct: 71 REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD----LESQ 126
Query: 141 ALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 178
V + + Y S K +N+D + L++
Sbjct: 127 RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVR 165
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (140), Expect = 1e-11
Identities = 31/174 (17%), Positives = 55/174 (31%), Gaps = 14/174 (8%)
Query: 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ + T + + +PTV N T+ L+D GQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134
+ + L S + + + P L++G +ID
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLR 120
Query: 135 EALSKQALVDQLGLESITDRE----------VCCYMISCKDSINIDAVIDWLIK 178
+ S + + + IT V S + V D I
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.7 bits (138), Expect = 2e-11
Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 6/158 (3%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG---FNMRKVTKGNVTIKLWDLGGQRRFRTM 80
++G GK++L + D PT+ + + + D GQ F M
Sbjct: 10 VVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAM 69
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140
E+Y R L V DR S ++L P++++GNK D
Sbjct: 70 REQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVT 129
Query: 141 ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
Q + +V S K +N+D L++
Sbjct: 130 QEEGQQLARQL---KVTYMEASAKIRMNVDQAFHELVR 164
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.4 bits (132), Expect = 1e-10
Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 8/154 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQRRFR 78
+IG N GKT L G + + T+G + R+ + G +R +
Sbjct: 7 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK 66
Query: 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138
+M + Y R V A+++V D + S + + E + IP +++GNK D A+
Sbjct: 67 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQ 126
Query: 139 KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172
L + + + S K+ + D V
Sbjct: 127 VP---TDLAQKFADTHSMPLFETSAKNPNDNDHV 157
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.0 bits (131), Expect = 2e-10
Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 11/159 (6%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQRRFRT 79
L+G GKT+ V TG + + + T+G + +G + +WD GQ +F
Sbjct: 8 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 67
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+ + Y + + D R + + + + IP+++ GNK+D K
Sbjct: 68 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD--LVRVCENIPIVLCGNKVDI-----K 120
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
V + + + Y IS K + N + WL +
Sbjct: 121 DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 159
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.9 bits (128), Expect = 3e-10
Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 9/163 (5%)
Query: 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF----NMRKVTKGNVTIKLWDLGGQR 75
+++ ++G GK+S++ G +++D T+G +V +V + LWD GQ
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135
F + + Y RG A + V DR+ + + IP ++ NKID +
Sbjct: 63 EFDAITKAYYRGAQACVLVFSTTDRE--SFEAISSWREKVVAEVGDIPTALVQNKIDLLD 120
Query: 136 ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ ++ ++ Y S K+ +N+ V +L +
Sbjct: 121 ---DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 160
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.2 bits (129), Expect = 4e-10
Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 14/168 (8%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTM 80
++G GKT L+ + + E +PTV N + + V + LWD G + +
Sbjct: 7 IVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL 66
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140
IL DS+ + + +P++++GNK D +
Sbjct: 67 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTR 125
Query: 141 ALVDQLGLESITDRE----------VCCYMISCKDSINIDAVIDWLIK 178
+ ++ E + E S K + V + +
Sbjct: 126 RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 173
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 7e-10
Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 7/162 (4%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW----DLGGQRRFRT 79
+ G GK+SLV G + E IPTV R+V + +I G +
Sbjct: 7 VFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAM 66
Query: 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139
+G + IL + + + +K + IP++++GNK D+S +
Sbjct: 67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREV 126
Query: 140 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181
Q + S K + N+ + L+ K
Sbjct: 127 Q---SSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 165
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.7 bits (125), Expect = 1e-09
Identities = 33/165 (20%), Positives = 72/165 (43%), Gaps = 8/165 (4%)
Query: 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN----MRKVTKGNVTIKLWDLGG 73
+E+++ L+G GK+S++ + ++ PT+G + + +WD G
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62
Query: 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 133
RFR + Y RG +A + V D ++ ++ + EL I + + GNK D
Sbjct: 63 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCDL 121
Query: 134 SEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
++ + ++++ + S K++INI+ + + +
Sbjct: 122 TD---VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISR 163
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.8 bits (120), Expect = 5e-09
Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 9/160 (5%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTV---GFNMRKVTKGNVTIKLWDLGGQRRFRTM 80
++G GK++L + D PT+ ++ + + D GQ F M
Sbjct: 9 VVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM 68
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140
E+Y R L V D+ S +L P++++ NK+D L
Sbjct: 69 REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD----LMHL 124
Query: 141 ALVDQLGLESITDREVCCYM-ISCKDS-INIDAVIDWLIK 178
V + + + + Y+ S KD +N+D L++
Sbjct: 125 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 164
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 1e-08
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 3/163 (1%)
Query: 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77
E+ L ++G +GK+SL++ TG Y +++ T +
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137
+ + V + + D +V +L L + G+ L ++G + S +
Sbjct: 64 DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGR-GGLALALVGTQDRISASS 122
Query: 138 SKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIKH 179
+ D D + C Y +N+D V + +
Sbjct: 123 PRVV-GDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQK 164
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 8e-08
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 6/163 (3%)
Query: 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG--QRR 76
E++L++ G GK++LV T + + PT+ R + + ++ +
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61
Query: 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136
E + R + V D DR S + L + L+++GNK D
Sbjct: 62 DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH- 120
Query: 137 LSKQALVDQLGLESITDREVCCYMISCKDS-INIDAVIDWLIK 178
+ + + G + T+ Y S NI + L +
Sbjct: 121 --SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCR 161
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 47.7 bits (112), Expect = 9e-08
Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 21/176 (11%)
Query: 21 ELSLIGLQNAGKTSLVNTI-----ATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQ 74
++ L+G NAGK+SL+ + Y + P +G L D+ G
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE---VSEEERFTLADIPGI 59
Query: 75 RRFRTMWE-------RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVL 127
+ + R+ +LYV+DAAD + P+L P LV
Sbjct: 60 IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA 119
Query: 128 GNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183
NK+D E + +AL D L E + +S + A+ + L ++
Sbjct: 120 LNKVDLLEEEAVKALADALAREGL-----AVLPVSALTGAGLPALKEALHALVRST 170
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.0 bits (110), Expect = 1e-07
Identities = 26/169 (15%), Positives = 58/169 (34%), Gaps = 15/169 (8%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTM 80
++G GKT+L++ A + E+ +PTV N + + + + LWD G + +
Sbjct: 7 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 66
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140
A+L D + +++ + + + +L++G K D +S
Sbjct: 67 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTL 125
Query: 141 ALVDQLGLESITDRE----------VCCYMISCKDSIN-IDAVIDWLIK 178
+ ++ + S S N + +
Sbjct: 126 VELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 174
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 1e-06
Identities = 31/167 (18%), Positives = 64/167 (38%), Gaps = 6/167 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQ 74
+ +++++G ++ GK+SL G + + PT+ K+ N ++L D GQ
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134
+ + Y ++ + V S + + +LL IP++++GNK D
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 135 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181
+ ES S K++ V +I ++
Sbjct: 123 MERVISYEEGKALAESW---NAAFLESSAKENQTAVDVFRRIILEAE 166
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 43.5 bits (101), Expect = 2e-06
Identities = 26/177 (14%), Positives = 49/177 (27%), Gaps = 20/177 (11%)
Query: 23 SLIGLQNAGKTSLVNTIATGGYSEDMIPTV---------GFNMRKVTKGNVTIKLWDLGG 73
G N GK++L+ + P V + G +
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63
Query: 74 QRRFRTMWERYCRG----------VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP 123
Q R + + V + R E IP
Sbjct: 64 QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123
Query: 124 LLVLGNKIDKSEALSKQALVDQLGLE-SITDREVCCYMISCKDSINIDAVIDWLIKH 179
+V NK+DK + + + E +++ + IS K NI+ + + + +
Sbjct: 124 TIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV 180
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 43.6 bits (101), Expect = 3e-06
Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 20/169 (11%)
Query: 23 SLIGLQNAGKTSLVNTI------------ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
+++G N GK++L+N + T + I T G
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 68
Query: 71 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 130
R V +++VV+ P + + NK
Sbjct: 69 RAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAV------NK 122
Query: 131 IDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
+D + + Q + ++ IS + +N+D + + KH
Sbjct: 123 VDNVQEKADLLPHLQFLASQMNFLDI--VPISAETGLNVDTIAAIVRKH 169
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 2e-05
Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 13/170 (7%)
Query: 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG-- 72
+++ + LIG Q GK++L N A S D V V + +
Sbjct: 3 YYR----VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 58
Query: 73 ----GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 128
+ + + + A L V DR S A +L IP++++G
Sbjct: 59 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 118
Query: 129 NKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
NK D + + S N+ + + +++
Sbjct: 119 NKSDLVRCREVSVSEGRACAVVF---DCKFIETSAAVQHNVKELFEGIVR 165
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 40.9 bits (94), Expect = 2e-05
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 9/167 (5%)
Query: 21 ELSLIGLQNAGKTSLVNTI----ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76
E++L G N GK+S +N++ S T N + + + G +
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84
Query: 77 FRTMWERYCRGVSAIL-----YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
++ E + R + + D ++ ++ GIP++V+ K
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144
Query: 132 DKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
DK + D E + S + D + K
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK 191
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.9 bits (95), Expect = 4e-05
Identities = 27/209 (12%), Positives = 64/209 (30%), Gaps = 28/209 (13%)
Query: 2 GFLDSILNWLRSLFFKQE---MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF---- 54
G + + + + + + +++ G +GK+S +NT+ G E+ G
Sbjct: 36 GNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT 95
Query: 55 --NMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHE 112
+ WDL G + Y + Y + + +
Sbjct: 96 MERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRF--KKNDID 153
Query: 113 LLMKPSLSGIPLLVLGNKID---------KSEALSKQALVDQL------GLESITDREVC 157
+ S+ + K+D + + K+ ++ + E
Sbjct: 154 IAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPP 213
Query: 158 CYMISCKD--SINIDAVIDWLIKHSKTAK 184
+++S K+ + ++D LI K
Sbjct: 214 IFLLSNKNVCHYDFPVLMDKLISDLPIYK 242
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 8e-05
Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 5/157 (3%)
Query: 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVT--IKLWDLGGQRRFRTMW 81
L+G GK++L + R + + ++D+ Q R +
Sbjct: 6 LLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLP 65
Query: 82 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA 141
A + V D+ S A +L +P++++GNK D +
Sbjct: 66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR---SRE 122
Query: 142 LVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
+ G + S N+ A+ + +++
Sbjct: 123 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 159
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 39.0 bits (89), Expect = 1e-04
Identities = 19/168 (11%), Positives = 42/168 (25%), Gaps = 19/168 (11%)
Query: 23 SLIGLQNAGKTSLVNTI-----------ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL 71
+++G N GK++L+N + + V +
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 68
Query: 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131
V+A+++VVD + + + + + +
Sbjct: 69 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 128
Query: 132 DKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
E K E M+S D + + L+
Sbjct: 129 KYPEEAMKA--------YHELLPEAEPRMLSALDERQVAELKADLLAL 168
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 39.0 bits (89), Expect = 1e-04
Identities = 19/159 (11%), Positives = 50/159 (31%), Gaps = 2/159 (1%)
Query: 23 SLIGLQNAGKTSLVNTI--ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80
++G N GK++L N + ED ++ +
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 63
Query: 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140
+ L ++ AD + + + + + ++A + +
Sbjct: 64 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR 123
Query: 141 ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
++ E + +S + +IN+D +++ +IK
Sbjct: 124 EFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKK 162
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 38.0 bits (87), Expect = 2e-04
Identities = 27/174 (15%), Positives = 62/174 (35%), Gaps = 27/174 (15%)
Query: 20 MELSLIGLQNAGKTSLVNTIA-------------TGGYSEDMIPTVGFNMRKVTKGNVTI 66
+ + ++G N GK++L+N + T + I G R V V
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 67 KLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 126
+ DL + + +L+V+DA+ + + V
Sbjct: 61 ETNDLVERLGIERTLQEI-EKADIVLFVLDASSPLDEEDRKILERIKNKRYL-------V 112
Query: 127 LGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180
+ NK+D E ++++ + ++LG + IS ++ + + + + +
Sbjct: 113 VINKVDVVEKINEEEIKNKLG------TDRHMVKISALKGEGLEKLEESIYRET 160
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 37.2 bits (85), Expect = 4e-04
Identities = 19/170 (11%), Positives = 49/170 (28%), Gaps = 13/170 (7%)
Query: 21 ELSLIGLQNAGKTSLVNTI--ATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGGQRR- 76
++ L+G + GK++L++ + A ++ T+ N+ T + + DL G
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62
Query: 77 -------FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129
R + + + P + +
Sbjct: 63 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122
Query: 130 KIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179
+K + ++ + D V + IS + ++ +
Sbjct: 123 VANKMDMPEAAENLEAFKEKLTDDYPV--FPISAVTREGLRELLFEVANQ 170
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 36.2 bits (83), Expect = 0.001
Identities = 33/196 (16%), Positives = 64/196 (32%), Gaps = 37/196 (18%)
Query: 17 KQEMELSLIGLQNAGKTSLVNTI----ATGGYSEDMIPTVGFNMRKVTKGNVTIK----- 67
K + + IG + GKT+L I A GG ++ N + +TI
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE 60
Query: 68 ---------LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS 118
D G + + + VV A D P+ ++ H LL +
Sbjct: 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG---PMPQTREHLLLAR-Q 116
Query: 119 LSGIPLLVLGNKIDKSEA-----LSKQALVDQLGLESITDREVCCYMISCKDSI------ 167
+ ++V NK D + L + + + L E + S ++
Sbjct: 117 IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPE 176
Query: 168 ----NIDAVIDWLIKH 179
++ ++D + +
Sbjct: 177 LGLKSVQKLLDAVDTY 192
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 35.9 bits (81), Expect = 0.001
Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 19/168 (11%)
Query: 20 MELSLIGLQNAGKTSLVNTIA---------TGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
M++ + G NAGK+SL+N +A G + D++ T L +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61
Query: 71 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 130
+ + + A + + + +E+ + + +P+ V+ NK
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121
Query: 131 IDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178
D + + LG+ + + +S + +D + + L +
Sbjct: 122 ADITG--------ETLGMSEVNGHAL--IRLSARTGEGVDVLRNHLKQ 159
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 35.1 bits (79), Expect = 0.002
Identities = 31/187 (16%), Positives = 66/187 (35%), Gaps = 15/187 (8%)
Query: 3 FLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIA------------TGGYSEDMIP 50
F+ S + +R L +E++ G NAGK+S +NT+ ++
Sbjct: 1 FVMSAPD-IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE 59
Query: 51 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSEL 110
G ++ + ++ R + E + S VV R + ++
Sbjct: 60 VADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQM 119
Query: 111 HELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 170
E + +++ + LL +K+ ++ +V + L D +V S +D
Sbjct: 120 IEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV--ETFSSLKKQGVD 177
Query: 171 AVIDWLI 177
+ L
Sbjct: 178 KLRQKLD 184
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 184 | |||
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 100.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 100.0 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 100.0 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 100.0 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.98 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.97 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.96 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.96 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.96 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.96 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.95 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.95 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.95 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.94 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.94 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.94 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.94 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.93 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.93 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.93 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.93 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.93 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.92 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.91 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.91 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.91 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.9 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.89 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.87 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.85 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.84 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.84 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.84 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.83 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.83 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.81 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.72 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.7 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.67 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.66 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.65 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.6 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.33 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.28 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.19 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.15 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.14 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.78 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.67 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.61 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.58 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.53 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.36 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.36 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.25 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.23 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.2 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.2 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.15 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.13 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 98.1 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 98.06 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 98.04 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 98.02 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.99 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.98 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.96 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.94 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.93 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.92 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.91 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.89 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.88 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.88 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.85 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.84 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.81 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.78 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.75 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.73 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.73 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.69 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.67 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.67 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.64 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.63 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.62 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.62 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.61 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.59 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.59 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.58 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.58 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.57 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.57 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.56 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.56 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.55 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.55 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.54 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.54 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.52 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.52 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.52 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.5 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.5 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 97.49 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.49 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.49 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.48 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.47 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.47 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.47 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.47 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.46 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.46 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 97.45 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.44 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 97.44 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.43 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.43 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.43 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.43 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.42 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 97.41 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.41 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.41 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 97.39 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.38 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.37 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.36 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.36 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 97.36 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.34 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.33 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 97.27 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 97.26 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 97.26 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 97.21 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 97.2 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 97.19 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 97.19 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 97.18 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 97.16 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 97.16 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 97.13 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 97.09 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 97.07 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 97.05 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 97.05 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.99 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.94 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.89 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 96.88 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.86 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.82 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.81 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.81 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.78 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.76 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.74 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.73 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.67 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.59 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.55 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.52 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.51 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.49 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 96.43 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.41 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 96.38 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.35 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.34 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.29 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.29 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.29 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 96.28 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.28 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 96.27 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.13 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 96.1 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 96.1 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.98 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.97 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.96 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.95 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 95.94 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 95.93 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.9 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.85 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.77 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.71 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 95.65 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.52 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 95.5 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.42 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 95.4 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.38 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 95.32 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 95.13 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.95 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.93 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 94.93 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.87 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 94.49 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.39 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.28 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 93.74 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.7 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 93.62 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 93.59 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 93.34 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 93.33 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 93.06 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 92.3 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 92.23 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 92.03 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 91.8 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 91.16 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.84 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 90.69 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.66 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 90.56 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 90.34 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.11 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 90.02 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 89.97 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 88.52 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 88.4 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 88.35 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 88.1 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 86.98 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 86.04 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 85.97 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 85.82 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 85.54 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 84.7 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 83.48 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 83.29 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 82.63 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 81.2 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 80.06 |
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=9.7e-39 Score=206.72 Aligned_cols=164 Identities=65% Similarity=1.157 Sum_probs=152.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+++||+++|++|||||||++++..+.+...+.+|.+.....++..++.+.+||+||++.+...+..++.+++++++|+|+
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 80 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA 80 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEET
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccc
Confidence 47899999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHH
Q 030000 98 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 177 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 177 (184)
+++.++.....++..+.......++|+++|+||.|+......++..+.++........++++++||++|+|++++|+||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~ 160 (164)
T d1zd9a1 81 ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHH
Confidence 99999999999999898887778899999999999988778888888888777777788999999999999999999999
Q ss_pred HHhh
Q 030000 178 KHSK 181 (184)
Q Consensus 178 ~~~~ 181 (184)
+.++
T Consensus 161 ~~~k 164 (164)
T d1zd9a1 161 QHSK 164 (164)
T ss_dssp HTCC
T ss_pred HccC
Confidence 8753
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=1.4e-37 Score=201.51 Aligned_cols=165 Identities=32% Similarity=0.601 Sum_probs=148.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+.+||+++|++|||||||+++|.+..+ ....+|.+.....++..++.+.+||+||++.+...+..+++.++++++|+|+
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 79 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 79 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeec
Confidence 468999999999999999999987665 4677899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHH
Q 030000 98 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 177 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 177 (184)
++..++.....++...+......++|+++|+||+|+.+.....+..+.+.........+++++|||++|+|++++++||.
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 159 (165)
T d1ksha_ 80 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 159 (165)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999888887776678899999999999988777778777777666667788999999999999999999999
Q ss_pred HHhhhc
Q 030000 178 KHSKTA 183 (184)
Q Consensus 178 ~~~~~~ 183 (184)
+++.++
T Consensus 160 ~~i~~r 165 (165)
T d1ksha_ 160 DDISSR 165 (165)
T ss_dssp HHHHTC
T ss_pred HHHHcC
Confidence 988753
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=3.8e-38 Score=207.21 Aligned_cols=169 Identities=33% Similarity=0.573 Sum_probs=148.2
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+..++.+||+++|++|||||||++++..+.+. ...+|.+.........++.+.+||+||++.+...+..++.+++++++
T Consensus 12 ~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~ 90 (182)
T d1moza_ 12 WGSNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIF 90 (182)
T ss_dssp TTCSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred hCCCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEE
Confidence 35668899999999999999999999876654 45578888888889999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|+|+++..++.....++...+......+.|+++++||+|+......+++.+.++........+++++|||++|+||++++
T Consensus 91 v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~ 170 (182)
T d1moza_ 91 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 170 (182)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHH
T ss_pred EeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHH
Confidence 99999999999999998888777777889999999999998877888888888877777778899999999999999999
Q ss_pred HHHHHHhhhc
Q 030000 174 DWLIKHSKTA 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
++|.+.++++
T Consensus 171 ~~l~~~i~~~ 180 (182)
T d1moza_ 171 DWLIDVIKEE 180 (182)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999998875
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=1.5e-37 Score=202.73 Aligned_cols=171 Identities=33% Similarity=0.622 Sum_probs=152.4
Q ss_pred HHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCC
Q 030000 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVS 89 (184)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 89 (184)
-+.+++.++.+||+++|++|||||||++++.++.+. ...+|.+..........+.+.+||+||++.+...+..++++++
T Consensus 3 ~~~~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (173)
T d1e0sa_ 3 VLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ 81 (173)
T ss_dssp HHHHHHTTCCEEEEEEEETTSSHHHHHHHTTCCCCE-EEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCC
T ss_pred hhhhhhCCCeEEEEEECCCCCCHHHHHHHHhcCCCC-CccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccc
Confidence 355667888999999999999999999999877754 4556788888888889999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++++|+|+++..++.....++...+......+.|+++++||+|+.+.....++.+.++......+.+.+++|||++|+||
T Consensus 82 ~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv 161 (173)
T d1e0sa_ 82 GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 161 (173)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred eEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCH
Confidence 99999999999999999999988887766678999999999999888888888888887777777889999999999999
Q ss_pred HHHHHHHHHHhh
Q 030000 170 DAVIDWLIKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
+++|+||.+.++
T Consensus 162 ~e~~~~l~~~~k 173 (173)
T d1e0sa_ 162 YEGLTWLTSNYK 173 (173)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhcC
Confidence 999999998763
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=3.3e-37 Score=201.68 Aligned_cols=165 Identities=33% Similarity=0.594 Sum_probs=147.0
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..++++||+++|++|||||||++++.++.+. ...++.+.....+...++.+.+||++|++.+...+..+++.+|++++|
T Consensus 12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 90 (176)
T d1fzqa_ 12 APDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (176)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhcCCCC-cceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEe
Confidence 3457899999999999999999999988774 344667788888889999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+|+++..++.....++..........++|+++++||+|+..........+.+.......+.+++++|||++|+|++++|+
T Consensus 91 ~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~ 170 (176)
T d1fzqa_ 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 170 (176)
T ss_dssp EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred eccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998887777777899999999999998888888888887666667788999999999999999999
Q ss_pred HHHHHh
Q 030000 175 WLIKHS 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
||.+.+
T Consensus 171 ~l~~~i 176 (176)
T d1fzqa_ 171 WVCKNV 176 (176)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 998864
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-35 Score=191.29 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=113.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EE--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RK--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++.+..+... .++.+..+ .. ++...+.+.+||++|++++...+..+++++|++++|||
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d 80 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 80 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCc-CCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence 7999999999999999999988766443 34444333 23 33456889999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--H---HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--K---QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
++++.++..+..|+..+.......++|+++|+||+|+..... . +++.+.. ++++++|||++|.||++
T Consensus 81 ~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~e~Sak~~~~v~~ 152 (168)
T d2gjsa1 81 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF--------DCKFIETSAALHHNVQA 152 (168)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TSEEEECBTTTTBSHHH
T ss_pred ccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhc--------CCEEEEEeCCCCcCHHH
Confidence 999999999999999887766667899999999999876432 2 2222222 34699999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+|++|.+.+..+
T Consensus 153 ~f~~l~~~i~~~ 164 (168)
T d2gjsa1 153 LFEGVVRQIRLR 164 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-35 Score=193.91 Aligned_cols=164 Identities=20% Similarity=0.287 Sum_probs=133.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.+||+++|++|||||||++++..+.+...+.+|...... .+ +...+.+.+||++|++++...+..+++++++++
T Consensus 3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 82 (173)
T d2fn4a1 3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 82 (173)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence 356799999999999999999999999998887777653332 23 344588899999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++..+..|+..+.+.....+.|+++|+||+|+..... .++...... ..+.++++|||++|.||+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~g~gv~ 157 (173)
T d2fn4a1 83 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA-----SHHVAYFEASAKLRLNVD 157 (173)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHH
T ss_pred eecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHH-----hcCCEEEEEeCCCCcCHH
Confidence 9999999999999999988886655557899999999999865422 222222111 123479999999999999
Q ss_pred HHHHHHHHHhhhcC
Q 030000 171 AVIDWLIKHSKTAK 184 (184)
Q Consensus 171 ~l~~~i~~~~~~~~ 184 (184)
++|+.+++.+.+.+
T Consensus 158 e~f~~l~~~i~k~~ 171 (173)
T d2fn4a1 158 EAFEQLVRAVRKYQ 171 (173)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=1.4e-35 Score=192.44 Aligned_cols=160 Identities=21% Similarity=0.308 Sum_probs=130.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
-+||+++|++|||||||++++..+.+...+.+|.+..+.. ++...+.+.+||++|++++......+++++|++++|+
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 83 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF 83 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEe
Confidence 5799999999999999999999999998888998866543 3445688999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|++++.++..+..|+..+.+.....++|+++|+||+|+.+... .++..+... ..+++++++||++|.||+++|
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~g~gv~e~f 158 (168)
T d1u8za_ 84 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTRANVDKVF 158 (168)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHHHH
T ss_pred eccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHH-----HcCCeEEEEcCCCCcCHHHHH
Confidence 9999999999999998887665667899999999999865422 222222211 123469999999999999999
Q ss_pred HHHHHHhhhc
Q 030000 174 DWLIKHSKTA 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
+++++.+.++
T Consensus 159 ~~l~~~i~~r 168 (168)
T d1u8za_ 159 FDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHCc
Confidence 9999988653
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-36 Score=194.90 Aligned_cols=158 Identities=22% Similarity=0.417 Sum_probs=128.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe----ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
++||+++|++|+|||||++++..+.+...+.+|.+....... ...+.+.+||++|++.+...+..++++++++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 589999999999999999999999998888899886654432 3568999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
||+++++++..+..|+....+.. +++|+++|+||+|+.......+..... ...+++++++||++|.||+++|+
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sak~~~~v~e~f~ 155 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKPFL 155 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSHHHH-----SSCSSEEEEEBTTTTBTTTHHHH
T ss_pred cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876542 479999999999997654433322222 23456799999999999999999
Q ss_pred HHHHHhhhc
Q 030000 175 WLIKHSKTA 183 (184)
Q Consensus 175 ~i~~~~~~~ 183 (184)
+|.+.+.++
T Consensus 156 ~l~~~l~~~ 164 (170)
T d1i2ma_ 156 WLARKLIGD 164 (170)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHccC
Confidence 999988654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-35 Score=192.85 Aligned_cols=160 Identities=19% Similarity=0.294 Sum_probs=133.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+++||+++|++|||||||++++..+.+...+.+|.+..... .....+.+.+||++|++.+...+..+++++|++++|
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 81 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence 47899999999999999999999999998888888855543 335568899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.+++.+..|+..+.+.....++|+++|+||+|+..... .++...... .....++++|||++|+||+++
T Consensus 82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gv~e~ 157 (167)
T d1c1ya_ 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH----HhCCCEEEEEcCCCCcCHHHH
Confidence 99999999999999999887665567899999999999976433 222222111 112357999999999999999
Q ss_pred HHHHHHHhh
Q 030000 173 IDWLIKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
|+++++.+.
T Consensus 158 F~~l~~~i~ 166 (167)
T d1c1ya_ 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998875
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-35 Score=192.62 Aligned_cols=158 Identities=19% Similarity=0.300 Sum_probs=132.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
++.+||+++|++|||||||++++.++.+...+.+|.+..+.. ++...+.+.+||++|.+++......+++++|++++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 81 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence 457899999999999999999999999988888888866543 34455888999999999999888899999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHH---HHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQA---LVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|||+++++++..+..|+..+.+.....++|+++|+||+|+..... .++ +.+.+ ++++++|||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~--------~~~~~e~Sak~~~~ 153 (167)
T d1xtqa1 82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESW--------NAAFLESSAKENQT 153 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECCTTCHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHc--------CCEEEEEecCCCCC
Confidence 999999999999999998887766667899999999999866422 222 33322 34699999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
|+++|+.++..+++
T Consensus 154 v~~~f~~li~~~~K 167 (167)
T d1xtqa1 154 AVDVFRRIILEAEK 167 (167)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988763
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-35 Score=191.25 Aligned_cols=158 Identities=23% Similarity=0.338 Sum_probs=129.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+||+++|++|+|||||+++++.+.+...+.+|.+..+.. ++...+.+.+||++|++.+......+++++|++++|
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 80 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 80 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence 47899999999999999999999999988888998865443 334457889999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCcccccC--H---HHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 95 VDAADRDSVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEALS--K---QALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
||+++++++..+..|+..+... ....++|+++|+||+|+..... . +++.+.+ .+++++|||++|.|
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~--------~~~~~e~Sak~~~~ 152 (171)
T d2erxa1 81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW--------KCAFMETSAKLNHN 152 (171)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTTBS
T ss_pred eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHc--------CCeEEEEcCCCCcC
Confidence 9999999999999988776543 2346799999999999865432 2 2232322 34799999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
|+++|+.|++.+.++
T Consensus 153 v~e~f~~l~~~~~~~ 167 (171)
T d2erxa1 153 VKELFQELLNLEKRR 167 (171)
T ss_dssp HHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988765
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-35 Score=191.04 Aligned_cols=163 Identities=21% Similarity=0.302 Sum_probs=129.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+++.+||+++|++|||||||++++..+.+...+.+|.+..... ++...+.+.+||++|++++......+++.+|+++
T Consensus 2 m~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 81 (171)
T d2erya1 2 MQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFL 81 (171)
T ss_dssp CCCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEE
Confidence 3567999999999999999999999999988888887744432 3345578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|.+++.++..+..|+..+.........|+++|+||+|+.... ..++..+... ..++++++|||++|.||+
T Consensus 82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~~~~i~ 156 (171)
T d2erya1 82 LVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLAR-----QLKVTYMEASAKIRMNVD 156 (171)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHH-----HTTCEEEECBTTTTBSHH
T ss_pred EeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHH-----HcCCEEEEEcCCCCcCHH
Confidence 999999999999999999887766666789999999999986542 2222222211 123479999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
++|++|++.+.+.
T Consensus 157 e~f~~l~~~i~k~ 169 (171)
T d2erya1 157 QAFHELVRVIRKF 169 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.3e-34 Score=188.00 Aligned_cols=159 Identities=21% Similarity=0.383 Sum_probs=127.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-+||+++|++|||||||++++..+.+...+.++.+..... +. ...+.+.+||+||++++...+..+++++|++|+|
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv 84 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 84 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 4899999999999999999999999888888777744433 33 3447899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+++++++.....++...... .....|+++++||+|+..... .++..+.. ...++++++|||++|.||+++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gv~e~ 158 (169)
T d3raba_ 85 YDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINVKQT 158 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHHH
T ss_pred EECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhHHHH-----HHcCCEEEEecCCCCcCHHHH
Confidence 9999999999988888766433 346799999999999876433 22221111 112347999999999999999
Q ss_pred HHHHHHHhhhc
Q 030000 173 IDWLIKHSKTA 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
|+++++.+.++
T Consensus 159 f~~l~~~i~ek 169 (169)
T d3raba_ 159 FERLVDVICEK 169 (169)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhC
Confidence 99999988653
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-35 Score=192.02 Aligned_cols=162 Identities=19% Similarity=0.247 Sum_probs=128.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+.||+|+|++|+|||||++++..+.+...+.+|.+..... +....+.+.+||++|++.+...+..+++++|++++||
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence 4699999999999999999999999998888888754432 3455678999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc----------CCCceeEEEeeecc
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----------TDREVCCYMISCKD 165 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~ 165 (184)
|++++++|+....|+...+.... +++|+++|+||+|+.+.....+.......... .....++++|||++
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt 160 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred ccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 99999999998887777665533 57999999999999654322221111111100 01124799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030000 166 SINIDAVIDWLIKHSK 181 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~ 181 (184)
|.||+++|+.+.+.+.
T Consensus 161 ~~gi~e~F~~i~~~~l 176 (177)
T d1kmqa_ 161 KDGVREVFEMATRAAL 176 (177)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-35 Score=190.27 Aligned_cols=161 Identities=17% Similarity=0.290 Sum_probs=132.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+++||+++|++|||||||+++++++.+...+.+|.+..+.. .....+.+.+||++|++.+......+++.++++++|
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv 81 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence 46999999999999999999999999988888888855443 223458899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+|.+++.+++....|+..+.......++|+++|+||+|+.......+..+.+.. ...+++++|||++|+||+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~e~Sak~g~gi~e~f~ 157 (166)
T d1ctqa_ 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLAR----SYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHHH
T ss_pred ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHH----HhCCeEEEEcCCCCcCHHHHHH
Confidence 999999999999999988876655578999999999998654322222222211 1234699999999999999999
Q ss_pred HHHHHhhh
Q 030000 175 WLIKHSKT 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
++++.+.+
T Consensus 158 ~i~~~i~~ 165 (166)
T d1ctqa_ 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998875
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.7e-35 Score=189.65 Aligned_cols=158 Identities=20% Similarity=0.289 Sum_probs=132.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+||+++|++|||||||++++.++.+...+.+|.+..+.. ++...+.+.+||++|++.+......+++++|++++|
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv 82 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV 82 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence 46999999999999999999999999988888888754433 334558899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HH---HHHHHhCCCccCCCceeEEEeeeccCC-C
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQ---ALVDQLGLESITDREVCCYMISCKDSI-N 168 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~ 168 (184)
||++++.++..+..|+..+.+.....++|+++++||+|+..... .+ ++.+.+ +++++++||++|. |
T Consensus 83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~--------~~~~~e~Sak~~~~n 154 (169)
T d1x1ra1 83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY--------NIPYIETSAKDPPLN 154 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH--------TCCEEEEBCSSSCBS
T ss_pred cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHc--------CCEEEEEcCCCCCcC
Confidence 99999999999999999887766667899999999999876432 22 233333 2469999999886 9
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
|+++|+.+.+.+.++
T Consensus 155 V~~~F~~l~~~i~~~ 169 (169)
T d1x1ra1 155 VDKTFHDLVRVIRQQ 169 (169)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.6e-35 Score=188.58 Aligned_cols=156 Identities=19% Similarity=0.345 Sum_probs=130.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+++||+++|++|||||||+++++.+.+...+.+|.+..... ++...+.+.+||++|++.+......++++++++++|
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 81 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence 57999999999999999999999999988888888744333 334458899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-----HHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
+|++++.++.....|+..+.......++|+++|+||+|+...... +.+.+.. ..++++|||++|.||
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~e~Sak~g~~i 153 (167)
T d1kaoa_ 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW--------GCPFMETSAKSKTMV 153 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--------TSCEEEECTTCHHHH
T ss_pred eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHc--------CCeEEEECCCCCcCH
Confidence 999999999999999988876656678999999999998764322 1222222 236999999999999
Q ss_pred HHHHHHHHHHhh
Q 030000 170 DAVIDWLIKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
+++|+++++.+.
T Consensus 154 ~e~f~~i~~~i~ 165 (167)
T d1kaoa_ 154 DELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999998764
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-35 Score=192.89 Aligned_cols=166 Identities=19% Similarity=0.217 Sum_probs=129.0
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
+....+||+++|++|+|||||+++++.+.+...+.+|.+..... .....+.+.+||++|++.+...+..+++++|++
T Consensus 5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ 84 (185)
T d2atxa1 5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 84 (185)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence 45667999999999999999999999999988888888744433 223558899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc----------CCCceeEEEe
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----------TDREVCCYMI 161 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 161 (184)
++|||++++++|+....++....+.. ..++|+++|+||+|+.+................ ......+++|
T Consensus 85 ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~ 163 (185)
T d2atxa1 85 LICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 163 (185)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred eeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence 99999999999998877777766543 357999999999998653221111111100000 0012468999
Q ss_pred eeccCCCHHHHHHHHHHHhh
Q 030000 162 SCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~~~ 181 (184)
||++|.||+++|+.+++.+.
T Consensus 164 SAk~~~gv~e~F~~li~~il 183 (185)
T d2atxa1 164 SALTQKGLKTVFDEAIIAIL 183 (185)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHc
Confidence 99999999999999988764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.2e-34 Score=185.98 Aligned_cols=158 Identities=25% Similarity=0.356 Sum_probs=126.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||++++..+.+.....++.+.... .+. ...+.+.+||+||++++...+..++++++++++|
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v 84 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 84 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence 489999999999999999999999988887777664433 333 4457899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|.+++.++.....++..+... .....|+++|+||+|+.+... .++..+... ..++++++|||++|+||+++
T Consensus 85 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~-----~~~~~~~~~SAktg~gV~e~ 158 (171)
T d2ew1a1 85 YDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKESDNVEKL 158 (171)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHHH
T ss_pred eecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHHHHH-----hCCCEEEEEccCCCCCHHHH
Confidence 9999999999999998877554 335789999999999876432 222222111 12346899999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|.+|+..+..
T Consensus 159 f~~l~~~l~~ 168 (171)
T d2ew1a1 159 FLDLACRLIS 168 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988876543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-34 Score=186.78 Aligned_cols=157 Identities=23% Similarity=0.270 Sum_probs=127.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
++||+++|++|||||||+++++.+.+...+.+|.+..+.. .+...+.+.+||++|++.+. ....++++++++++|+
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~ 80 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY 80 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence 6899999999999999999999999999999998866544 23445889999999998875 4556788999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CH---HHHHHHhCCCccCCCceeEEEeeeccCC-CH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SK---QALVDQLGLESITDREVCCYMISCKDSI-NI 169 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i 169 (184)
|++++.++..+..|+..........+.|+++|+||+|+.... .. +++.+.+ .+++++|||++|+ ||
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~--------~~~~~e~Saktg~gnV 152 (168)
T d2atva1 81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL--------ACAFYECSACTGEGNI 152 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--------TSEEEECCTTTCTTCH
T ss_pred ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHh--------CCeEEEEccccCCcCH
Confidence 999999999998876655444445689999999999996542 22 2333333 3469999999998 59
Q ss_pred HHHHHHHHHHhhhcC
Q 030000 170 DAVIDWLIKHSKTAK 184 (184)
Q Consensus 170 ~~l~~~i~~~~~~~~ 184 (184)
+++|..+.+.+.++|
T Consensus 153 ~e~F~~l~~~i~~~r 167 (168)
T d2atva1 153 TEIFYELCREVRRRR 167 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887754
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.8e-34 Score=184.63 Aligned_cols=158 Identities=22% Similarity=0.364 Sum_probs=129.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe----ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+++||+++|.+|||||||++++..+.+...+.+|.+....... .....+.+||++|++++...+..++++++++++
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 82 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence 6799999999999999999999999999888888876554422 334668899999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|+++++++..+..|+...... ...+.|+++|+||+|+..... .++..+... ..++++++|||++|.||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SAk~~~nV~e 156 (167)
T d1z0ja1 83 VYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAIFVETSAKNAININE 156 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHHH
T ss_pred EeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHHHH-----HcCCEEEEEecCCCCCHHH
Confidence 99999999999999988776543 336899999999999965422 222222111 1234799999999999999
Q ss_pred HHHHHHHHhh
Q 030000 172 VIDWLIKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
+|.+|.+.++
T Consensus 157 ~f~~l~~~i~ 166 (167)
T d1z0ja1 157 LFIEISRRIP 166 (167)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhCC
Confidence 9999999875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-34 Score=184.60 Aligned_cols=157 Identities=21% Similarity=0.351 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++++...+.++.+...... +...+.+.+||++|++.+...+..++++++++++|+
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 6999999999999999999999999888888877555432 244588999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|.+++.++..+..|+....... ..++|+++|+||+|+.+... .++..+... ...+++++|||++|+||+++|
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~SAk~g~~v~e~f 154 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNVMFIETSAKAGYNVKQLF 154 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHHH
T ss_pred ccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHHHHH-----HcCCEEEEecCCCCcCHHHHH
Confidence 9999999999999998876543 35799999999999875432 222222111 123469999999999999999
Q ss_pred HHHHHHhhh
Q 030000 174 DWLIKHSKT 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
++|.+.++-
T Consensus 155 ~~i~~~l~g 163 (164)
T d1yzqa1 155 RRVAAALPG 163 (164)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhhCC
Confidence 999998763
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2e-34 Score=186.32 Aligned_cols=153 Identities=25% Similarity=0.481 Sum_probs=126.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|+|||||++++..+.+...+.+|.+..... .. ...+.+.+||++|++++......++++++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 4799999999999999999999999988888888754443 22 3357889999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--H---HHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--K---QALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
+|++++.+++.+..|+..+.... +++|+++|+||+|+.+... . +.+.+.+ +++++++||++|.||
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~e~Sak~g~~v 151 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL--------KLRFYRTSVKEDLNV 151 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH--------TCEEEECBTTTTBSS
T ss_pred EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHHHHc--------CCEEEEeccCCCcCH
Confidence 99999999999998888775432 4799999999999876432 2 2222222 347999999999999
Q ss_pred HHHHHHHHHHhh
Q 030000 170 DAVIDWLIKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
+++|++|.+.+.
T Consensus 152 ~e~f~~l~~~~l 163 (164)
T d1z2aa1 152 SEVFKYLAEKHL 163 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=100.00 E-value=4.6e-33 Score=181.99 Aligned_cols=173 Identities=27% Similarity=0.511 Sum_probs=146.8
Q ss_pred HHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccC
Q 030000 8 LNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRG 87 (184)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 87 (184)
...+.+++.++++||+|+|.+|||||||++++.++++.. ..++.+.........+..+.+||+++++.....+..++..
T Consensus 4 ~~~~~~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 82 (177)
T d1zj6a1 4 FTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTN 82 (177)
T ss_dssp HHHHHHHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEE-EECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTT
T ss_pred HHHHHHHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceeEEEEeecceEEEEeccccccccccchhhhhcc
Confidence 344456778899999999999999999999999877653 3455566667777888999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++++++|.++..++.....+...........+.|+++|+||+|+......++..+.+.......+.++++++||++|+
T Consensus 83 ~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~ 162 (177)
T d1zj6a1 83 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGE 162 (177)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred ceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCC
Confidence 99999999999999999988888777777666789999999999998888888888888877777788899999999999
Q ss_pred CHHHHHHHHHHHhh
Q 030000 168 NIDAVIDWLIKHSK 181 (184)
Q Consensus 168 ~i~~l~~~i~~~~~ 181 (184)
|++++++||.++++
T Consensus 163 Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 163 GLCQGLEWMMSRLK 176 (177)
T ss_dssp THHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.3e-34 Score=184.28 Aligned_cols=156 Identities=21% Similarity=0.313 Sum_probs=125.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|+|||||++++.++.+...+.++.+..... ++...+.+.+||+||++++...+..+++++|++++|
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv 83 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 83 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence 4899999999999999999999999888777766644332 334557899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+++.+++.....|+..+.+. .....|+++++||+|+...... ++...... ...+++++|||++|+||+++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Saktg~~v~e~ 157 (166)
T d1z0fa1 84 YDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASAKTGENVEDA 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHH
T ss_pred eccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999888877543 3467899999999998654322 22222111 12347999999999999999
Q ss_pred HHHHHHHh
Q 030000 173 IDWLIKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
|+++.+.+
T Consensus 158 f~~i~~~i 165 (166)
T d1z0fa1 158 FLEAAKKI 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998865
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-33 Score=183.70 Aligned_cols=160 Identities=24% Similarity=0.366 Sum_probs=130.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||++++..+.+...+.+|.+...... ....+.+.+||++|++++...+..++++++++++|
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 85 (170)
T d1r2qa_ 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV 85 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence 58999999999999999999999999988888888666542 23347899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
+|.++.+++.....|+..+.+.. .++.|+++|+||+|+...... .+..+.+. ....++++++||++|+||+++|
T Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~----~~~~~~~~e~SAk~g~~V~e~f 160 (170)
T d1r2qa_ 86 YDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA----DDNSLLFMETSAKTSMNVNEIF 160 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHH
T ss_pred eccchhhHHHHHHHHhhhhhhcc-CCCceEEeecccccccccccccHHHHHHHH----HhcCCEEEEeeCCCCCCHHHHH
Confidence 99999999999999888775533 367999999999998764322 11111111 1123579999999999999999
Q ss_pred HHHHHHhhhc
Q 030000 174 DWLIKHSKTA 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
+.|.+.+.++
T Consensus 161 ~~l~~~i~~n 170 (170)
T d1r2qa_ 161 MAIAKKLPKN 170 (170)
T ss_dssp HHHHHTSCCC
T ss_pred HHHHHHHhhC
Confidence 9999988753
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-34 Score=188.71 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=128.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+||+++|++|+|||||++++..+.+...+.+|.+..... .....+.+.+||++|++++...+..+++++|++++|
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 81 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 81 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence 36899999999999999999999999998888988855443 233457899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc----------cCCCceeEEEeeec
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----------ITDREVCCYMISCK 164 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~Sa~ 164 (184)
||++++++|+.+..|+....... ..+.|+++|+||+|+.+.....+......... ......++++|||+
T Consensus 82 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 160 (191)
T d2ngra_ 82 FSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL 160 (191)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred cccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence 99999999999987777665543 36799999999999865322111110000000 00123469999999
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+|.||+++|+.+...+.+
T Consensus 161 ~~~~V~e~f~~l~~~~~~ 178 (191)
T d2ngra_ 161 TQKGLKNVFDEAILAALE 178 (191)
T ss_dssp TCTTHHHHHHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 999999999999887654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.3e-34 Score=184.44 Aligned_cols=158 Identities=26% Similarity=0.321 Sum_probs=122.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||++++..+.+...+.+|.+...... ....+.+.+||++|++++...+..+++++|++++|
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 82 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV 82 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence 58999999999999999999999999988888888555442 23458899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
||++++++|..+..|+..+... .....|+++++||+|+..... .++..+... ..++++++|||++|.||+++
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~-----~~~~~~~e~Sak~~~~v~e~ 156 (167)
T d1z08a1 83 YDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAKQNKGIEEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTTTTBSHHHH
T ss_pred EeCCchhHHHhhhhhhhhcccc-cccccceeeeccccccccccccchHHHHHHHH-----HcCCeEEEEecCCCcCHHHH
Confidence 9999999999999988766433 235789999999999876432 222222211 12347999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|++|.+.+.+
T Consensus 157 F~~l~~~i~~ 166 (167)
T d1z08a1 157 FLDLCKRMIE 166 (167)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999988754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-34 Score=187.99 Aligned_cols=165 Identities=20% Similarity=0.248 Sum_probs=128.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.+||+|+|++|||||||+++++.+.+...+.+|.+..... .+...+.+.+||++|++.+...+..+++++|++++
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence 467999999999999999999999999988888888744432 34556888999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc----------CCCceeEEEeee
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----------TDREVCCYMISC 163 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa 163 (184)
|+|++++++|..+..++....... ..++|+++|+||+|+.................. .....++++|||
T Consensus 83 v~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA 161 (183)
T d1mh1a_ 83 CFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (183)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred eeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence 999999999999887666655443 357999999999998654322111111111000 012357999999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++|.||+++|+.+.+.+.+
T Consensus 162 k~~~~V~e~F~~l~~~il~ 180 (183)
T d1mh1a_ 162 LTQRGLKTVFDEAIRAVLC 180 (183)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCcCHHHHHHHHHHHHcC
Confidence 9999999999999987654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-34 Score=188.29 Aligned_cols=158 Identities=26% Similarity=0.370 Sum_probs=128.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|+|||||++++..+.+...+.+|.+..+. .+.. ..+.+.+||++|++++...+..++.++|++++|
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence 589999999999999999999999999888888885443 3333 447899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-----HHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-----KQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
||.+++.++.....|+....... ....|+++++||+|+.+... .++..+.. ...+++++++||++|.||
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gV 156 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDMLQEGGERKVAREEGEKLA-----EEKGLLFFETSAKTGENV 156 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTH
T ss_pred EeCCcccchhhhhhhhhhhcccc-ccccceeeeecccccccccchhhhhHHHHHHHH-----HHcCCEEEEecCCCCcCH
Confidence 99999999999999987765443 35789999999999865322 12221111 122457999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030000 170 DAVIDWLIKHSKT 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++|+.|.+.++-
T Consensus 157 ~e~F~~i~~~i~~ 169 (170)
T d1ek0a_ 157 NDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-33 Score=186.53 Aligned_cols=160 Identities=21% Similarity=0.355 Sum_probs=129.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee------------ecCEEEEEEEcCCccchhHhHHhh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT------------KGNVTIKLWDLGGQRRFRTMWERY 84 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~------------~~~~~~~~~d~~g~~~~~~~~~~~ 84 (184)
-+||+++|++|||||||++++.++.+...+.++.+..+.. +. ...+.+.+||++|++++...+..+
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~ 84 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 84 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence 4899999999999999999999999887777776654432 22 123679999999999999999999
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEee
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
+++++++|+|||++++.++..+..|+..+.........|+++|+||+|+...... ++..+... ..+++++++|
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~-----~~~~~~~e~S 159 (186)
T d2f7sa1 85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KYGIPYFETS 159 (186)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEEEB
T ss_pred HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHH-----HcCCEEEEEe
Confidence 9999999999999999999999998887776666778999999999999764322 22221111 1234699999
Q ss_pred eccCCCHHHHHHHHHHHhhhc
Q 030000 163 CKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~~ 183 (184)
|++|+||+++|+++.+.+.++
T Consensus 160 ak~~~~i~e~f~~l~~~i~~k 180 (186)
T d2f7sa1 160 AATGQNVEKAVETLLDLIMKR 180 (186)
T ss_dssp TTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987653
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.8e-34 Score=184.72 Aligned_cols=159 Identities=21% Similarity=0.333 Sum_probs=129.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||++++..+++...+.+|.+...... +.....+.+||+||++++...+..++++++++++|
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 84 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence 48999999999999999999999999888888877655442 23457899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
+|.++++++..+..++..+..... .++|+++|+||+|+...... .+....+. ....++++++||++|+||+++|
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~~~gi~e~f 159 (174)
T d2bmea1 85 YDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFA----QENELMFLETSALTGENVEEAF 159 (174)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHH
T ss_pred EecccchhHHHHhhhhcccccccC-CceEEEEEEecccccchhchhhhHHHHHH----HhCCCEEEEeeCCCCcCHHHHH
Confidence 999999999999999888765433 68999999999998654332 11212211 1123579999999999999999
Q ss_pred HHHHHHhhh
Q 030000 174 DWLIKHSKT 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++.+.+.+
T Consensus 160 ~~l~~~i~~ 168 (174)
T d2bmea1 160 VQCARKILN 168 (174)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=100.00 E-value=1.5e-32 Score=176.65 Aligned_cols=160 Identities=31% Similarity=0.594 Sum_probs=139.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+||+++|++|||||||++++.++++...... ........+...+.+.+||++|...+......++.+++++++++|..+
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~ 79 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCC-SSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccc-eeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecC
Confidence 5899999999999999999998887654433 334455667888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHH
Q 030000 100 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
+.++.....++............|+++++||.|+......++..............+++++|||++|+||+++|+||.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~ 159 (160)
T d1r8sa_ 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (160)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhc
Confidence 99999999999999887777889999999999998877777777777666666677899999999999999999999886
Q ss_pred h
Q 030000 180 S 180 (184)
Q Consensus 180 ~ 180 (184)
+
T Consensus 160 l 160 (160)
T d1r8sa_ 160 L 160 (160)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-33 Score=182.93 Aligned_cols=161 Identities=22% Similarity=0.387 Sum_probs=132.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|+|||||++++.++.+.....++.+.... .+ ....+.+.+||+||++++...+..+++++|++++
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~ 85 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 85 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4689999999999999999999999988887776664433 23 3455789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|+|++++.++.....|+..+.........|+++++||.|....... ++..+... ...++++++||++|+||+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~tg~gv~e~ 160 (177)
T d1x3sa1 86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKTCDGVQCA 160 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHH
T ss_pred EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHH-----HCCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999998877777778999999999998654322 22222111 12347999999999999999
Q ss_pred HHHHHHHhhhc
Q 030000 173 IDWLIKHSKTA 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
|+++++.+.+.
T Consensus 161 f~~l~~~l~~~ 171 (177)
T d1x3sa1 161 FEELVEKIIQT 171 (177)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHccC
Confidence 99999987654
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.3e-33 Score=181.05 Aligned_cols=158 Identities=27% Similarity=0.465 Sum_probs=115.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe-----ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
-+||+++|++|||||||++++.++.+...+.+|.+....... .....+.+||++|++++...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 489999999999999999999999988887777664444322 234778999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhc---CCCCCCCcEEEEEeCCCcccccC---H---HHHHHHhCCCccCCCceeEEEeeec
Q 030000 94 VVDAADRDSVPIARSELHELLM---KPSLSGIPLLVLGNKIDKSEALS---K---QALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~iivv~nK~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
|+|++++.++.....|+..+.. .....++|+++++||+|+.+... . +++.+.+ ...++++|||+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~-------~~~~~~e~SA~ 154 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSL-------GDIPLFLTSAK 154 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHT-------TSCCEEEEBTT
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHc-------CCCeEEEEeCC
Confidence 9999999999999988877643 23446789999999999875422 1 2222222 23468999999
Q ss_pred cCCCHHHHHHHHHHHhhhc
Q 030000 165 DSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~~ 183 (184)
+|.||+++|++|.+.+.++
T Consensus 155 ~g~gv~e~f~~l~~~~l~~ 173 (175)
T d1ky3a_ 155 NAINVDTAFEEIARSALQQ 173 (175)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 9999999999999876554
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-33 Score=182.13 Aligned_cols=158 Identities=22% Similarity=0.363 Sum_probs=124.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-+||+++|++|||||||++++.++.+...+.++.+... ..+. ...+.+.+||++|++++...+..++++++++++|
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v 83 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 83 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence 48999999999999999999999998877766655333 3333 3457899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
+|.+++.++.....++..+..... .++|+++|+||+|+.+.... .+...... .....+++++||++|+||+++|
T Consensus 84 ~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~g~~i~e~f 158 (175)
T d2f9la1 84 YDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAFA----EKNNLSFIETSALDSTNVEEAF 158 (175)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHH
T ss_pred EECCCcccchhHHHHHHHHHHhcC-CCCcEEEEEeeecccccccchHHHHHHhh----cccCceEEEEecCCCcCHHHHH
Confidence 999999999999999888765543 67999999999999764322 11111111 1123479999999999999999
Q ss_pred HHHHHHhh
Q 030000 174 DWLIKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+++.+.+.
T Consensus 159 ~~l~~~i~ 166 (175)
T d2f9la1 159 KNILTEIY 166 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-33 Score=184.05 Aligned_cols=157 Identities=17% Similarity=0.269 Sum_probs=126.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|||||||+++++.+.+...+.+|.+..... ++...+.+.+||++|++.+...+..+++++|++++||
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence 4799999999999999999999999998888887744433 3345688999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--------------H---HHHHHHhCCCccCCCceeE
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------K---QALVDQLGLESITDREVCC 158 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~---~~~~~~~~~~~~~~~~~~~ 158 (184)
|++++++|.....++...+.... .+.|+++|+||+|+..... . ..+.+.. ...+|
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~-------~~~~y 153 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI-------GAATY 153 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH-------TCSEE
T ss_pred ecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHh-------CCCeE
Confidence 99999999999888777655433 5899999999999864211 1 1111111 12469
Q ss_pred EEeeeccCCC-HHHHHHHHHHHhhhc
Q 030000 159 YMISCKDSIN-IDAVIDWLIKHSKTA 183 (184)
Q Consensus 159 ~~~Sa~~~~~-i~~l~~~i~~~~~~~ 183 (184)
++|||++|.| |+++|+.+...+.++
T Consensus 154 ~E~SAk~~~n~i~~~F~~~~~~~l~k 179 (179)
T d1m7ba_ 154 IECSALQSENSVRDIFHVATLACVNK 179 (179)
T ss_dssp EECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999985 999999999888653
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-33 Score=186.12 Aligned_cols=158 Identities=27% Similarity=0.406 Sum_probs=128.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--E--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-+||+|+|++|||||||++++..+.+...+.+|.+..... + ....+.+.+||+||++++...+..++++++++|+|
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v 85 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV 85 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 4899999999999999999999999888888887754432 3 34568899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+++++++.....++..+... ...+.|+++|+||+|+.+.... ++...... ....+++++||++|.||+++
T Consensus 86 ~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~SAk~g~gi~e~ 159 (194)
T d2bcgy1 86 YDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDSTNVEDA 159 (194)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTCTTHHHH
T ss_pred EeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhhh-----ccCcceEEEecCcCccHHHH
Confidence 9999999999998888776543 3478999999999998764322 22222211 12346999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+.+
T Consensus 160 f~~l~~~i~~ 169 (194)
T d2bcgy1 160 FLTMARQIKE 169 (194)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-33 Score=182.81 Aligned_cols=160 Identities=24% Similarity=0.378 Sum_probs=124.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-+||+++|++|+|||||+++++.+++...+.+|.+..... +. ...+.+.+||+||++.+...+..++++++++++|
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 4899999999999999999999999988888887754443 33 4457888999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+|.++++++.....++...... .....|++++++|.|+.+.....+..+.+.. ..++++++|||++|+||+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~e~f~ 156 (166)
T d1g16a_ 82 YDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIFF 156 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHHH----HHTCCEEECBTTTTBSHHHHHH
T ss_pred EECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhhhhhhHHHHHHHHH----hcCCeEEEECCCCCCCHHHHHH
Confidence 9999999999988887766544 3367889999999998765443333333221 1235799999999999999999
Q ss_pred HHHHHhhhc
Q 030000 175 WLIKHSKTA 183 (184)
Q Consensus 175 ~i~~~~~~~ 183 (184)
++.+.+.++
T Consensus 157 ~l~~~i~~k 165 (166)
T d1g16a_ 157 TLAKLIQEK 165 (166)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999988764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.4e-34 Score=186.68 Aligned_cols=160 Identities=24% Similarity=0.394 Sum_probs=100.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.-+||+++|++|||||||++++..+.+.....+|.+.... .+. ...+.+.+||+||++.+...+..++++++++|+
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~ 84 (173)
T d2fu5c1 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 84 (173)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence 3589999999999999999999998888777777775443 333 345788999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|++++.++.....++..+... ...+.|+++|+||.|+...... ++..... ....+++++|||++|+||++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~g~gv~e 158 (173)
T d2fu5c1 85 VYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVEN 158 (173)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHHH
T ss_pred EEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHHHH-----HhcCCEEEEEeCCCCCCHHH
Confidence 99999999999999988877433 3467999999999998764332 2221111 12245799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+|++|.+.+..+
T Consensus 159 ~f~~l~~~i~~k 170 (173)
T d2fu5c1 159 AFFTLARDIKAK 170 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.3e-33 Score=180.35 Aligned_cols=158 Identities=20% Similarity=0.316 Sum_probs=121.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+|+|++|||||||++++.++++...+.++.+..... .......+.+||++|++.+...+..+++++|++++|+
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~ 83 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 83 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEE
Confidence 799999999999999999999998877766655433322 3334578999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|++++.++.....|+..+.+.. ..++|+++|+||+|+...... .+....+. ....++++++||++|.||+++|.
T Consensus 84 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~a----~~~~~~~~e~Sa~tg~~V~e~f~ 158 (173)
T d2a5ja1 84 DITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFA----REHGLIFMETSAKTACNVEEAFI 158 (173)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH----HHHTCEEEEECTTTCTTHHHHHH
T ss_pred eecChHHHHhHHHHHHHHHHhC-CCCCeEEEEecCCchhhhhhhHHHHHHHHH----HHcCCEEEEecCCCCCCHHHHHH
Confidence 9999999999999988776543 367999999999998653321 11111111 11234799999999999999999
Q ss_pred HHHHHhhh
Q 030000 175 WLIKHSKT 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
++.+.+.+
T Consensus 159 ~i~~~i~~ 166 (173)
T d2a5ja1 159 NTAKEIYR 166 (173)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=7e-33 Score=182.16 Aligned_cols=161 Identities=23% Similarity=0.410 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+|+|.+|||||||++++.++++...+.+|.+...... ....+.+.+||++|+..+...+..++..++++++|+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 7999999999999999999999999988888888655443 234578999999999999988899999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcC---CCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 96 DAADRDSVPIARSELHELLMK---PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~---~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|.++..++..+..|+..+... ....++|+++|+||+|+.+.....+....+. ......++++|||++|+||+++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~e~Sak~~~gI~e~ 159 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC---YSKNNIPYFETSAKEAINVEQA 159 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH---HHTTSCCEEECBTTTTBSHHHH
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHH---HHhcCCeEEEEcCCCCcCHHHH
Confidence 999999999998888766443 3345689999999999866443332222221 1123457999999999999999
Q ss_pred HHHHHHHhhhc
Q 030000 173 IDWLIKHSKTA 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
|+++.+.+.++
T Consensus 160 f~~l~~~i~~~ 170 (184)
T d1vg8a_ 160 FQTIARNALKQ 170 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99998876553
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-32 Score=177.56 Aligned_cols=157 Identities=22% Similarity=0.234 Sum_probs=120.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeE--EE--EeecCEEEEEEEcCC---ccchhHhHHhhccCCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNM--RK--VTKGNVTIKLWDLGG---QRRFRTMWERYCRGVS 89 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~--~~--~~~~~~~~~~~d~~g---~~~~~~~~~~~~~~~~ 89 (184)
..+||+++|++|+|||||++++.+..+.. ...+|.+... .. ++...+.+.+||+++ ++++ ....+++++|
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~ 79 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD 79 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence 46899999999999999999999776643 3334444322 22 334567788999765 4444 4566789999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HH---HHHHHhCCCccCCCceeEEEeeec
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQ---ALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|||++++.++..+..|+..+.......++|+++|+||+|+..... .+ .+.+.+ +++++++||+
T Consensus 80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~--------~~~~~e~Sak 151 (172)
T d2g3ya1 80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF--------DCKFIETSAA 151 (172)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECBTT
T ss_pred eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHc--------CCeEEEEeCC
Confidence 9999999999999999999998887766667899999999999876432 22 222222 3479999999
Q ss_pred cCCCHHHHHHHHHHHhhhcC
Q 030000 165 DSINIDAVIDWLIKHSKTAK 184 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~~~ 184 (184)
+|.||+++|+.+++.++.+|
T Consensus 152 ~g~~i~~~f~~l~~~i~~rr 171 (172)
T d2g3ya1 152 VQHNVKELFEGIVRQVRLRR 171 (172)
T ss_dssp TTBSHHHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHHHcc
Confidence 99999999999999987764
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=100.00 E-value=8.7e-31 Score=169.66 Aligned_cols=167 Identities=34% Similarity=0.658 Sum_probs=149.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+++||+++|.+|||||||++++.++.+.. ..+|.+..........+.+.+||.+|...........+...+++++++|
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD 81 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCcc-eecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhh
Confidence 567999999999999999999999988764 4567777778888889999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
..+..++.....++............|+++++||.|+.......++...+.........++++++||++|+||+++|++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l 161 (169)
T d1upta_ 82 SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 161 (169)
T ss_dssp TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred hhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999888888777777889999999999998887777787777766666778899999999999999999999
Q ss_pred HHHhhhcC
Q 030000 177 IKHSKTAK 184 (184)
Q Consensus 177 ~~~~~~~~ 184 (184)
.+.+++++
T Consensus 162 ~~~l~~k~ 169 (169)
T d1upta_ 162 VETLKSRQ 169 (169)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhCC
Confidence 99998764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-32 Score=175.70 Aligned_cols=161 Identities=25% Similarity=0.401 Sum_probs=124.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+-+||+|+|++|||||||++++..+.+...+.+|.+..... .....+.+.+||++|+.+....+..++..++++++
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 84 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 84 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence 45899999999999999999999999988888877755432 22345788999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhc---CCCCCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 94 VVDAADRDSVPIARSELHELLM---KPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++|.+++.++.....|+..+.. .....+.|+++|+||+|+.+.. ..++..+.... ....++++|||++|+||
T Consensus 85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~----~~~~~~~e~Sak~~~gI 160 (174)
T d1wmsa_ 85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFETSAKDATNV 160 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEECCTTTCTTH
T ss_pred EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHH----cCCCeEEEEcCCCCcCH
Confidence 9999999999999888766543 3445679999999999986532 22222222211 12346999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030000 170 DAVIDWLIKHSKT 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++|+++.+.+.+
T Consensus 161 ~e~f~~l~~~il~ 173 (174)
T d1wmsa_ 161 AAAFEEAVRRVLA 173 (174)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988753
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-32 Score=176.30 Aligned_cols=158 Identities=25% Similarity=0.425 Sum_probs=117.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCccceeEEE--Ee--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDM-IPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~-~~t~~~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+||+++|+++||||||++++..+++.... .++.+..... +. ...+.+++|||||++++...+..+++++|++++
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~ 85 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL 85 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence 589999999999999999999998875444 4455544443 33 334788999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|++++.++.....++........ ...|+++++||+|+..... .++...... ...++++++||++|+||++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~d~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~g~gi~e 159 (170)
T d2g6ba1 86 LYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLNVDL 159 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHH
T ss_pred EecCCcccchhhhhhhhhhhhhccC-CCceEEEEEeeechhhcccccHHHHHHHHH-----HcCCEEEEEeCCCCcCHHH
Confidence 9999999999999988887755433 5789999999999876433 222222111 1234799999999999999
Q ss_pred HHHHHHHHhhh
Q 030000 172 VIDWLIKHSKT 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|++|.+.+++
T Consensus 160 ~f~~l~~~i~k 170 (170)
T d2g6ba1 160 AFTAIAKELKR 170 (170)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHcCC
Confidence 99999998764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=6.3e-32 Score=175.84 Aligned_cols=156 Identities=17% Similarity=0.232 Sum_probs=117.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+||+++|++|||||||+++++++.+.... +|.+..+. .+ +...+.+.+||++|+..+. +++++|++|+|
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~-~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV 77 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV 77 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHSCCCCCC-CSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCCcC-CccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence 4799999999999999999999999886543 44443333 23 3455889999999998753 57789999999
Q ss_pred EeCCCCCCHHHHHHHHHHHh--cCCCCCCCcEEEEEeCCCcccccC----HHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 95 VDAADRDSVPIARSELHELL--MKPSLSGIPLLVLGNKIDKSEALS----KQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
||++++++|+.+..|...+. +.....++|+++|+||.|+..... .++...... ....+++++|||++|.|
T Consensus 78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~----~~~~~~~~e~SAk~~~~ 153 (175)
T d2bmja1 78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA----DMKRCSYYETCATYGLN 153 (175)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH----TSTTEEEEEEBTTTTBT
T ss_pred eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHH----HhCCCeEEEeCCCCCcC
Confidence 99999999999988877663 334456789999999999754322 122222111 12345799999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
|+++|..+.+.+.+.
T Consensus 154 v~~~F~~l~~~i~~~ 168 (175)
T d2bmja1 154 VDRVFQEVAQKVVTL 168 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999877653
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.4e-31 Score=171.92 Aligned_cols=154 Identities=26% Similarity=0.432 Sum_probs=122.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhH-hHHhhccCCCEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRT-MWERYCRGVSAILY 93 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~i~ 93 (184)
.+||+++|++|||||||++++..+.+...+.++.+..... +......+.+||++|...+.. .+..+++++|++++
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il 81 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence 5899999999999999999999999888888877744432 345568899999999887764 57778999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeecc---CCC
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKD---SIN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~ 168 (184)
|+|+++++++..+..|+..+.+.....++|+++|+||+|+.+.. ..++..+... ...+++++|||++ ++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SAkt~~~~~~ 156 (165)
T d1z06a1 82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMPLFETSAKNPNDNDH 156 (165)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEECCSSSGGGGSC
T ss_pred EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHH-----HCCCEEEEEecccCCcCcC
Confidence 99999999999999999988776666789999999999987643 2222222111 1234699999987 559
Q ss_pred HHHHHHHHH
Q 030000 169 IDAVIDWLI 177 (184)
Q Consensus 169 i~~l~~~i~ 177 (184)
|+++|++|+
T Consensus 157 V~e~F~~lA 165 (165)
T d1z06a1 157 VEAIFMTLA 165 (165)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999999873
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.9e-29 Score=160.68 Aligned_cols=157 Identities=33% Similarity=0.555 Sum_probs=137.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
||+++|++|+|||||++++.++.+. ...+|.+.........+....+||++|...+...+..++..++++++++|.++.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 80 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADP 80 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccch
Confidence 8999999999999999999988875 467888888888888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc-------CCCceeEEEeeeccCCCHHHHH
Q 030000 101 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-------TDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
.++.....++..........+.|+++++||.|+.......+..+.+..... ..+.+++++|||++|+|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~ 160 (166)
T d2qtvb1 81 ERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160 (166)
T ss_dssp GGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHH
T ss_pred hhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHH
Confidence 999999888888888888889999999999999877677777666654322 2346689999999999999999
Q ss_pred HHHHH
Q 030000 174 DWLIK 178 (184)
Q Consensus 174 ~~i~~ 178 (184)
+||.+
T Consensus 161 ~~l~~ 165 (166)
T d2qtvb1 161 QWLSQ 165 (166)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 99975
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.96 E-value=1.6e-28 Score=161.16 Aligned_cols=165 Identities=28% Similarity=0.575 Sum_probs=131.6
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+++.||+++|++|||||||++++.++.+.. ..++.+.....+...+..+..||++++..+...+.......++++++
T Consensus 9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (186)
T d1f6ba_ 9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL 87 (186)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCCCcc-eecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeee
Confidence 45788999999999999999999998877653 45677777777888889999999999999988888999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc------------cCCCceeEEEee
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES------------ITDREVCCYMIS 162 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~S 162 (184)
+|..+...+......+..........+.|+++++||.|+.......++.+.+.... .....+++++||
T Consensus 88 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (186)
T d1f6ba_ 88 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCS 167 (186)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECB
T ss_pred eeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEe
Confidence 99999989988888777777666667899999999999987777766666664321 123456899999
Q ss_pred eccCCCHHHHHHHHHHHh
Q 030000 163 CKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~ 180 (184)
|++|+|++|+|+||.+.+
T Consensus 168 A~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 168 VLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp TTTTBSHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999999865
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=2.7e-29 Score=166.85 Aligned_cols=164 Identities=21% Similarity=0.305 Sum_probs=130.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+++||+++|..|||||||++++..+.+. +.||.|.....+....+.+.+||++|++.+...+..+++.++++++++|.
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~ 78 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVAL 78 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeec
Confidence 4799999999999999999999988774 56999999999999999999999999999999999999999999999999
Q ss_pred CCCCC----------HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC------------------HHHHH-----H
Q 030000 98 ADRDS----------VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS------------------KQALV-----D 144 (184)
Q Consensus 98 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~------------------~~~~~-----~ 144 (184)
++..+ +......+..++......+.|+++++||+|+.+... .+... +
T Consensus 79 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 158 (200)
T d2bcjq2 79 SEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKM 158 (200)
T ss_dssp GGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHH
T ss_pred cchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHH
Confidence 87543 333445555566665667899999999999854211 11111 1
Q ss_pred HhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 145 QLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
.........+.+.+++|||++|+||+++|+.|.+.+.++
T Consensus 159 f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~ 197 (200)
T d2bcjq2 159 FVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197 (200)
T ss_dssp HHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence 112222334567789999999999999999999888653
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=3.2e-29 Score=165.87 Aligned_cols=161 Identities=22% Similarity=0.310 Sum_probs=125.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+++||+++|..|||||||++++..+.+ +|.+.....+......+.+||++|++.+...+..+++.++++++|+|.
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~-----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~ 75 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 75 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHS-----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEG
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEee
Confidence 478999999999999999999986554 456777778889999999999999999999999999999999999999
Q ss_pred CCCCCHH----------HHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-----------------CHHH----HHHHh
Q 030000 98 ADRDSVP----------IARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----------------SKQA----LVDQL 146 (184)
Q Consensus 98 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----------------~~~~----~~~~~ 146 (184)
++..++. ....++..++......+.|+++++||+|+.... ...+ ....+
T Consensus 76 ~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 155 (195)
T d1svsa1 76 SDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQF 155 (195)
T ss_dssp GGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHH
T ss_pred cccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHH
Confidence 8877652 334455566666666789999999999974311 1111 11111
Q ss_pred C--CCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 147 G--LESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 147 ~--~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
. ......+.+.+++|||++|.||+++|+.+.+.+.++
T Consensus 156 ~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 156 EDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp HTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence 1 111223566788999999999999999999988764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=1.6e-27 Score=155.59 Aligned_cols=156 Identities=19% Similarity=0.158 Sum_probs=110.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccch--------hHhHHhhccC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF--------RTMWERYCRG 87 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~--------~~~~~~~~~~ 87 (184)
.-.|+|+|++|+|||||++++++.+.. .....|...........+..+.+|||||.... ......++++
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 84 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 84 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccc
Confidence 347999999999999999999987542 22334555666667788899999999996432 2333455789
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|+.++... ...++...++... .+.|+++|+||+|+.+..+ +..+.+... .....++++||++|.
T Consensus 85 ad~il~v~D~~~~~~~--~~~~i~~~l~~~~-~~~piilv~NK~Dl~~~~~--~~~~~~~~~---~~~~~~~~iSA~~~~ 156 (178)
T d1wf3a1 85 VNAVVWVVDLRHPPTP--EDELVARALKPLV-GKVPILLVGNKLDAAKYPE--EAMKAYHEL---LPEAEPRMLSALDER 156 (178)
T ss_dssp CSEEEEEEETTSCCCH--HHHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH--HHHHHHHHT---STTSEEEECCTTCHH
T ss_pred ccceeeeechhhhhcc--cccchhhheeccc-cchhhhhhhcccccccCHH--HHHHHHHhh---cccCceEEEecCCCC
Confidence 9999999999876544 3344444544332 4689999999999965432 222222111 112357889999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
|+++++++|.+.+++
T Consensus 157 gi~~L~~~i~~~lpe 171 (178)
T d1wf3a1 157 QVAELKADLLALMPE 171 (178)
T ss_dssp HHHHHHHHHHTTCCB
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999998864
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=4.9e-28 Score=160.78 Aligned_cols=161 Identities=20% Similarity=0.307 Sum_probs=120.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
.+||+++|++|||||||++++. +...+.||.|.....+......+.+||++|++.+...+..++++++++++++|.+
T Consensus 2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~ 78 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS 78 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence 5899999999999999999993 5567788999999999999999999999999999999999999999999999998
Q ss_pred CCCC----------HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc------------------CHHH----HHHHh
Q 030000 99 DRDS----------VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL------------------SKQA----LVDQL 146 (184)
Q Consensus 99 ~~~~----------~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------------~~~~----~~~~~ 146 (184)
+... +.....++..++......++|+++++||+|+.+.. +.+. +.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f 158 (200)
T d1zcba2 79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF 158 (200)
T ss_dssp CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence 7654 34556666677777667789999999999986421 1111 11111
Q ss_pred C--CCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 147 G--LESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 147 ~--~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
. ......+.+.++++||+++.||+++|+.+.+.+.+
T Consensus 159 ~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~ 196 (200)
T d1zcba2 159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 196 (200)
T ss_dssp HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence 1 11122345567789999999999999999887754
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=5.1e-27 Score=150.80 Aligned_cols=149 Identities=19% Similarity=0.172 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEeecCEEEEEEEcCCccchh--------HhHHhhccCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--------TMWERYCRGV 88 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~~~ 88 (184)
+||+++|++|||||||++++++.+... ....+.......+...+..+.+||+||..+.. .....++..+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA 81 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence 799999999999999999999776432 22334445556677888999999999944321 2233457889
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++++|..+..++.....+...+... ..++|+++|+||+|+...... .......+++++||++|+|
T Consensus 82 d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~iilv~NK~Dl~~~~~~----------~~~~~~~~~~~iSAk~~~g 149 (161)
T d2gj8a1 82 DRVLFMVDGTTTDAVDPAEIWPEFIARL--PAKLPITVVRNKADITGETLG----------MSEVNGHALIRLSARTGEG 149 (161)
T ss_dssp SEEEEEEETTTCCCCSHHHHCHHHHHHS--CTTCCEEEEEECHHHHCCCCE----------EEEETTEEEEECCTTTCTT
T ss_pred cccceeeccccccchhhhhhhhhhhhhc--ccccceeeccchhhhhhhHHH----------HHHhCCCcEEEEECCCCCC
Confidence 9999999999888877666554433322 247899999999998653221 1122356899999999999
Q ss_pred HHHHHHHHHHHh
Q 030000 169 IDAVIDWLIKHS 180 (184)
Q Consensus 169 i~~l~~~i~~~~ 180 (184)
|++++++|.+.+
T Consensus 150 i~~L~~~l~~~l 161 (161)
T d2gj8a1 150 VDVLRNHLKQSM 161 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhC
Confidence 999999998864
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.95 E-value=5.4e-27 Score=153.05 Aligned_cols=161 Identities=18% Similarity=0.212 Sum_probs=113.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---------CccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMI---------PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~---------~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
+.++|+++|++++|||||+|+|++........ .+.......+...+..+.++|+||+.++.......+..+
T Consensus 4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~ 83 (179)
T d1wb1a4 4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 83 (179)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence 57899999999999999999998643221111 122223334556788999999999999999889999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH---HHHHhCCCccCCCceeEEEeeecc
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA---LVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
|++++++|+.+....+.. ..+... .. .++|+++|+||+|+.+.+.... ..+.+..........+++++||++
T Consensus 84 d~~ilv~d~~~g~~~~~~-~~~~~~-~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~ 158 (179)
T d1wb1a4 84 DLALIVVDAKEGPKTQTG-EHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 158 (179)
T ss_dssp CEEEEEEETTTCSCHHHH-HHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred cccccccccccccchhhh-hhhhhh-hh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccC
Confidence 999999999876544332 222222 22 4789999999999977543322 222221111223456899999999
Q ss_pred CCCHHHHHHHHHHHhhhc
Q 030000 166 SINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~~ 183 (184)
|+|++++++.|.+.+++.
T Consensus 159 g~gi~eL~~~I~~~l~~~ 176 (179)
T d1wb1a4 159 GFGVDELKNLIITTLNNA 176 (179)
T ss_dssp CTTHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHhcCCcc
Confidence 999999999999988764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=4.7e-26 Score=146.06 Aligned_cols=147 Identities=16% Similarity=0.228 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccc--------h-hHhHHhhccC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------F-RTMWERYCRG 87 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~--------~-~~~~~~~~~~ 87 (184)
+||+++|.+|+|||||+|+|++.+.. .....|.......+...+..+.+||+||... . .......+.+
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 58999999999999999999876532 2233444555666778899999999999321 1 1223334678
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|++++.......-+. .. ...++++++||.|+.+..+.++..+.+... .+++++||++|+
T Consensus 81 ad~ii~v~d~~~~~~~~~~~~~~-~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~------~~~~~vSA~~g~ 147 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDRKILE-RI------KNKRYLVVINKVDVVEKINEEEIKNKLGTD------RHMVKISALKGE 147 (160)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHH-HH------TTSSEEEEEEECSSCCCCCHHHHHHHHTCS------TTEEEEEGGGTC
T ss_pred CCEEEEEEeCCCCcchhhhhhhh-hc------ccccceeeeeeccccchhhhHHHHHHhCCC------CcEEEEECCCCC
Confidence 99999999999887766443322 12 357899999999999988888887777542 358999999999
Q ss_pred CHHHHHHHHHHH
Q 030000 168 NIDAVIDWLIKH 179 (184)
Q Consensus 168 ~i~~l~~~i~~~ 179 (184)
||++++++|.+.
T Consensus 148 gi~~L~~~I~ke 159 (160)
T d1xzpa2 148 GLEKLEESIYRE 159 (160)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc
Confidence 999999998763
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=6.9e-26 Score=146.83 Aligned_cols=153 Identities=20% Similarity=0.215 Sum_probs=104.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccc---------hhHhHHhhccCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR---------FRTMWERYCRGV 88 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~~~ 88 (184)
+|+++|++|||||||+++|++.... .....|.......+......+.+||++|... ........+..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 6999999999999999999976543 2233455566677888999999999999321 223344457889
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|+++++.|......... ..++. .++. .++|+++|+||+|+......+...+.... ...+++++||++|.|
T Consensus 82 d~i~~~~~~~~~~~~~~-~~~~~-~l~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~i~iSAk~g~g 151 (171)
T d1mkya1 82 DLVLFVVDGKRGITKED-ESLAD-FLRK---STVDTILVANKAENLREFEREVKPELYSL-----GFGEPIPVSAEHNIN 151 (171)
T ss_dssp SEEEEEEETTTCCCHHH-HHHHH-HHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGGG-----SSCSCEECBTTTTBS
T ss_pred cEEEEeecccccccccc-ccccc-cccc---ccccccccchhhhhhhhhhhHHHHHHHhc-----CCCCeEEEecCCCCC
Confidence 99999999877655543 23333 3332 46899999999999764433332332221 122468899999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
|++++++|.+.++++
T Consensus 152 id~L~~~i~~~l~e~ 166 (171)
T d1mkya1 152 LDTMLETIIKKLEEK 166 (171)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999998765
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=1.8e-26 Score=155.20 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=126.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++.+||+++|+.|||||||++++..+.+ .||.|+....+..+++.+.+||++|++.++..|..++++++++++++|
T Consensus 4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d 79 (221)
T d1azta2 4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVA 79 (221)
T ss_dssp HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEE
T ss_pred hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEE
Confidence 3568999999999999999999975543 479999988899999999999999999999999999999999999999
Q ss_pred CCCC----------CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc------CHH--------------------
Q 030000 97 AADR----------DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL------SKQ-------------------- 140 (184)
Q Consensus 97 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~------~~~-------------------- 140 (184)
.++. .+.......+..++......++|+++++||+|+.+.. ...
T Consensus 80 ~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g 159 (221)
T d1azta2 80 SSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPG 159 (221)
T ss_dssp TTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTT
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCC
Confidence 8753 2344555667777777767789999999999986421 110
Q ss_pred --------------HHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 141 --------------ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 141 --------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.+.+.........+.+..+++||+++.+|+.+|+.+.+.+.+
T Consensus 160 ~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 160 EDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 215 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence 111111112222345567789999999999999998877764
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=6.9e-26 Score=148.72 Aligned_cols=162 Identities=18% Similarity=0.101 Sum_probs=109.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccch------------hHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF------------RTM 80 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~------------~~~ 80 (184)
.++.+||+++|++|+|||||+|++++.+. ......|.......+...+..+.++|+||.... ...
T Consensus 5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 84 (186)
T d1mkya2 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 84 (186)
T ss_dssp CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHH
Confidence 35679999999999999999999997653 222333444445566778888999999995432 223
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeE
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCC 158 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~ 158 (184)
....++.+|++++|+|+..+.... ...+ ...+.. .+.|+++++||+|+.... ...++.+.+..........++
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~~~~-~~~~-~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGITRQ-DQRM-AGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 159 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHH-HHHH-HHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhcCCEEEEeecccccchhh-HHHH-HHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeE
Confidence 444567899999999997654433 2222 323322 478999999999986543 234444444322222345579
Q ss_pred EEeeeccCCCHHHHHHHHHHHhhh
Q 030000 159 YMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 159 ~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+++||++|.|+++++++|.+.+..
T Consensus 160 ~~vSa~~g~gv~~L~~~i~~~~~~ 183 (186)
T d1mkya2 160 IFTSADKGWNIDRMIDAMNLAYAS 183 (186)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999888765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.93 E-value=4.9e-26 Score=150.38 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=109.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CCccc--eeEEEE---------------------eecCEEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM-----IPTVG--FNMRKV---------------------TKGNVTIKL 68 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~-----~~t~~--~~~~~~---------------------~~~~~~~~~ 68 (184)
++.++|+++|+.++|||||+++|++....... ..|.. +..... ......+++
T Consensus 3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T d1kk1a3 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence 56789999999999999999999864322111 11111 111111 112366899
Q ss_pred EEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH----HHH
Q 030000 69 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA----LVD 144 (184)
Q Consensus 69 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~----~~~ 144 (184)
+|+||+..|.......+..+|++++|+|+.+..........+...... ...++++++||+|+.+.....+ ..+
T Consensus 83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~~ 159 (195)
T d1kk1a3 83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 159 (195)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHHH
Confidence 999999999999998899999999999998764333333333333222 2345888999999976533222 222
Q ss_pred HhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 145 QLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.+. ......++++++||++|+|++++++.|.+.++
T Consensus 160 ~~~--~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 160 FIE--GTVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHT--TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred Hhc--cccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 222 22334678999999999999999999998875
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=5e-26 Score=148.64 Aligned_cols=156 Identities=24% Similarity=0.279 Sum_probs=106.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEE-EeecCEEEEEEEcCCccc-------hhHhHHhhccCCCE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRK-VTKGNVTIKLWDLGGQRR-------FRTMWERYCRGVSA 90 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~-~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~~~~ 90 (184)
.|+++|.+|||||||+|+|++...... ...|....... ....+..+.+||+||... ........+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 489999999999999999987654322 22333333333 334567899999999432 22234455788999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 91 ILYVVDAADRDSVPIARSELHELLM-KPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
+++++|.... .......+...+.. .....++|+++|+||+|+......+...+.+.. ...+++++||++|+|+
T Consensus 83 ~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~iSA~tg~gi 156 (180)
T d1udxa2 83 LLYVLDAADE-PLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR-----EGLAVLPVSALTGAGL 156 (180)
T ss_dssp EEEEEETTSC-HHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHT-----TTSCEEECCTTTCTTH
T ss_pred hhhhcccccc-cccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHh-----cCCeEEEEEcCCCCCH
Confidence 9999998643 22333333222211 111235799999999999876655555555532 3557999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030000 170 DAVIDWLIKHSKT 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++++.|.+.+++
T Consensus 157 d~L~~~i~~~l~~ 169 (180)
T d1udxa2 157 PALKEALHALVRS 169 (180)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998865
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.93 E-value=1.3e-25 Score=147.21 Aligned_cols=157 Identities=19% Similarity=0.267 Sum_probs=100.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCcc---------------chhHhHHhhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR---------------RFRTMWERYC 85 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~---------------~~~~~~~~~~ 85 (184)
.|+++|.+|+|||||+|++++.+......+........+...+ +.+||+||.. .+.......+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~~~--~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKN--HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA 79 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETT--EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccccccc--ceecccCCceeccccccccccccchhhhhhhhhcc
Confidence 6899999999999999999987764443332222233344444 5689999941 1122333456
Q ss_pred cCCCEEEEEEeCCCCCCH---------HHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCC
Q 030000 86 RGVSAILYVVDAADRDSV---------PIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDR 154 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~ 154 (184)
+.+|++++|+|+...... ......+...+.. .++|+++|+||+|+.+... .....+.+.. .....
T Consensus 80 ~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~ 155 (184)
T d2cxxa1 80 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLSEI 155 (184)
T ss_dssp GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-CGGGH
T ss_pred cccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-ccccc
Confidence 789999999998532110 0011112222222 4789999999999865322 1222333332 22233
Q ss_pred ceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 155 EVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
...++++||++|+|+++++++|.+.++++
T Consensus 156 ~~~~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 156 DKVFIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp HHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence 45688999999999999999999998864
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.93 E-value=2.9e-25 Score=147.64 Aligned_cols=163 Identities=21% Similarity=0.195 Sum_probs=108.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----C--ccceeEEE--------------------------EeecC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI-----P--TVGFNMRK--------------------------VTKGN 63 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~-----~--t~~~~~~~--------------------------~~~~~ 63 (184)
+++++|+++|+.++|||||+++|++........ . ..+..... .....
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 567999999999999999999998532211100 0 00111000 01122
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHH
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV 143 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~ 143 (184)
..++++|+||+..|.......+..+|++|+|+|+.+.-........+...... ...|+++++||+|+.+........
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~ 162 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY 162 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHH
Confidence 46899999999999998888899999999999998763223333333322222 235889999999997654332221
Q ss_pred HHhC--CCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 144 DQLG--LESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 144 ~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.... ........++++++||++|.||+++++.|.+.++.
T Consensus 163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence 1111 12233456789999999999999999999988764
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.93 E-value=3.7e-25 Score=145.37 Aligned_cols=162 Identities=15% Similarity=0.057 Sum_probs=115.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC----------------CC--CCCCCCccceeEEEEeecCEEEEEEEcCCccchh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG----------------GY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~----------------~~--~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 78 (184)
+++++|+++|+.++|||||+++++.. .. ....+-|.......+...+..++++|+||+..|.
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~ 80 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence 35799999999999999999999731 01 1112234445556677888999999999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-H----HHHHHhCCCccCC
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-Q----ALVDQLGLESITD 153 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~ 153 (184)
......+..+|++++|+|+.+.-..+. ...+...... ...|+++++||+|+...... + ++.+.+.......
T Consensus 81 ~~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 156 (196)
T d1d2ea3 81 KNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (196)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999987655443 3333333222 34678999999998753221 1 2222222222333
Q ss_pred CceeEEEeeeccC----------CCHHHHHHHHHHHhhh
Q 030000 154 REVCCYMISCKDS----------INIDAVIDWLIKHSKT 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~----------~~i~~l~~~i~~~~~~ 182 (184)
...+++++||++| +++.++++.|.+.++.
T Consensus 157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP~ 195 (196)
T d1d2ea3 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (196)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred ccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCCC
Confidence 4678999999998 5899999999887753
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=5.4e-25 Score=145.43 Aligned_cols=158 Identities=20% Similarity=0.175 Sum_probs=98.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCC--CccceeEEEEeecCEEEEEEEcCCccc-------------hh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRR-------------FR 78 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~-------------~~ 78 (184)
..+-.+|+|+|++|||||||+|+|++.+.. .... .|........ ...+.+.|+++... ..
T Consensus 20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 96 (195)
T d1svia_ 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc---cccceEEEEEeeccccccccccchhhhHH
Confidence 334458999999999999999999975431 1111 2222222222 22344566665211 11
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeE
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCC 158 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
.........++++++++|+..+... ....+...+.. .++|+++|+||+|+.+....++..+.+..........++
T Consensus 97 ~~~~~~~~~~~~vi~viD~~~~~~~--~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (195)
T d1svia_ 97 ETYITTREELKAVVQIVDLRHAPSN--DDVQMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred hhhhccccchhhhhhhhhccccccc--ccccccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCE
Confidence 2233445678999999999765432 22233333333 468999999999997766655544443322223455689
Q ss_pred EEeeeccCCCHHHHHHHHHHHhh
Q 030000 159 YMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 159 ~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
+.+||++|+|+++++++|.+.+.
T Consensus 172 ~~~SA~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998874
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.91 E-value=6.2e-25 Score=148.16 Aligned_cols=157 Identities=20% Similarity=0.190 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCcc--ceeEE----------------EEeecCEEEEEEEcCCccchhHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTV--GFNMR----------------KVTKGNVTIKLWDLGGQRRFRTM 80 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~--~~~~~----------------~~~~~~~~~~~~d~~g~~~~~~~ 80 (184)
.|+|+|++++|||||+++|++....... ..+. +.... .++..+..+.++||||+..|...
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~ 86 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL 86 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence 3999999999999999999854221110 1111 11111 13355678999999999999888
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH------------------HHH
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK------------------QAL 142 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~------------------~~~ 142 (184)
....+..+|++|+|+|+.+.-..... ..+..+. . .++|+++++||+|+...... ...
T Consensus 87 ~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~-~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 161 (227)
T d1g7sa4 87 RKRGGALADLAILIVDINEGFKPQTQ-EALNILR-M---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (227)
T ss_dssp BCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHH-H---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred chhcccccceEEEEEecccCcccchh-HHHHHhh-c---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHH
Confidence 77888999999999999875444332 2223232 2 47899999999998653311 000
Q ss_pred HHH-------hC----------CCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 143 VDQ-------LG----------LESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 143 ~~~-------~~----------~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
... +. .........+++++||++|.|++++++.|.+..++
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~ 218 (227)
T d1g7sa4 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (227)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 000 00 00011235689999999999999999999877654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=2.7e-24 Score=142.41 Aligned_cols=145 Identities=18% Similarity=0.122 Sum_probs=102.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--------CCC-----------CCCCCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG--------GYS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~--------~~~-----------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
+++++|+++|++++|||||+++|+.. ... ...+-|.......+.+.+..++++||||+..|
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 80 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence 35799999999999999999999721 100 01134666667778899999999999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccC-HH----HHHHHhCCCcc
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALS-KQ----ALVDQLGLESI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-~~----~~~~~~~~~~~ 151 (184)
.......+..+|++|+|+|+.+.-..+....| ..... .++| +++++||+|+.+... .+ ++.+.+.....
T Consensus 81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 155 (204)
T d2c78a3 81 IKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 155 (204)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999887666544433 32322 3565 778899999865322 12 22222222223
Q ss_pred CCCceeEEEeeeccC
Q 030000 152 TDREVCCYMISCKDS 166 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~ 166 (184)
.....+++..|+..+
T Consensus 156 ~~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 156 PGDEVPVIRGSALLA 170 (204)
T ss_dssp CTTTSCEEECCHHHH
T ss_pred Ccccceeeeeechhh
Confidence 344567888888643
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=2.9e-23 Score=138.23 Aligned_cols=158 Identities=25% Similarity=0.303 Sum_probs=107.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe---ecCEEEEEEEcCCccchh-HhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT---KGNVTIKLWDLGGQRRFR-TMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~i~v~d 96 (184)
+|+++|++|||||||+++++++.+... .+|.+.....+. .....+.+||++|++.+. ..+..++..++++++|+|
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D 80 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD 80 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence 699999999999999999998887654 355555554443 346889999999999886 467778899999999999
Q ss_pred CCCCCCH-HHHHHHHHHHhc--CCCCCCCcEEEEEeCCCcccccCHHHHHHHhCC-----------------------C-
Q 030000 97 AADRDSV-PIARSELHELLM--KPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL-----------------------E- 149 (184)
Q Consensus 97 ~~~~~~~-~~~~~~~~~~~~--~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----------------------~- 149 (184)
+++..+. .....++..++. .....++|+++++||+|+....+.+++.+.+.. .
T Consensus 81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
T d2fh5b1 81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQ 160 (207)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCC
T ss_pred cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhh
Confidence 9875543 333344444332 122356899999999999876555444332210 0
Q ss_pred ----------ccCCCceeEEEeeeccCCC------HHHHHHHHHHH
Q 030000 150 ----------SITDREVCCYMISCKDSIN------IDAVIDWLIKH 179 (184)
Q Consensus 150 ----------~~~~~~~~~~~~Sa~~~~~------i~~l~~~i~~~ 179 (184)
........++++|+++|.+ ++++-+|+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~ 206 (207)
T d2fh5b1 161 LGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 206 (207)
T ss_dssp SSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence 0011245789999999986 77788887653
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=8.3e-24 Score=138.57 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=102.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEee-cCEEEEEEEcCCccchh-------HhHHhhccCCCE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFR-------TMWERYCRGVSA 90 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~-------~~~~~~~~~~~~ 90 (184)
+|+++|++|+|||||+|+|.+.+... ....|.......... .+..+.+|||||..+.. ......+..++.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 82 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence 68999999999999999998766422 223344444544443 34679999999953211 112233556888
Q ss_pred EEEEEeCCCCCCHHHHHHHHH----HHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeecc
Q 030000 91 ILYVVDAADRDSVPIARSELH----ELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++++++............... .........++|+++|+||+|+.+.... +.+.+.+ ....+++.+||++
T Consensus 83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~------~~~~~v~~iSA~~ 156 (185)
T d1lnza2 83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL------TDDYPVFPISAVT 156 (185)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC------CSCCCBCCCSSCC
T ss_pred hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHh------ccCCcEEEEECCC
Confidence 888888765443332222111 1222334457899999999999764322 2333322 2345789999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
|+|+++++++|.+.+++
T Consensus 157 g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 157 REGLRELLFEVANQLEN 173 (185)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhhhh
Confidence 99999999999998865
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.89 E-value=6.1e-22 Score=132.27 Aligned_cols=151 Identities=14% Similarity=0.111 Sum_probs=103.0
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCC--C---------------------------------CCCCCCccceeEEEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGG--Y---------------------------------SEDMIPTVGFNMRKV 59 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~--~---------------------------------~~~~~~t~~~~~~~~ 59 (184)
..+..++|+++|+.++|||||+++|+... . ......|.......+
T Consensus 5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 84 (222)
T d1zunb3 5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 84 (222)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence 34567999999999999999999997211 0 001112333334445
Q ss_pred eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccC
Q 030000 60 TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALS 138 (184)
Q Consensus 60 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~ 138 (184)
...+..++++|+||+..|..........+|++++|+|+.+.-..+....+ . +... .+++ +++++||+|+.+...
T Consensus 85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~-~-~~~~---~gv~~iiv~vNK~D~~~~~~ 159 (222)
T d1zunb3 85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS-Y-IASL---LGIKHIVVAINKMDLNGFDE 159 (222)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH-H-HHHH---TTCCEEEEEEECTTTTTSCH
T ss_pred eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHH-H-HHHH---cCCCEEEEEEEccccccccc
Confidence 66778999999999999999999999999999999999876555433332 2 2222 3444 788999999976332
Q ss_pred H------HHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 139 K------QALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 139 ~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
. +++...+....+....++++++||++|+|+.
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 160 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 1 2222222222333456789999999999884
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=5.2e-21 Score=130.81 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=88.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--C------------------CCCCCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG--G------------------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~--~------------------~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
++.-+|+++|+.++|||||+.+++.. . .......|+......+++.+.+++++||||+.+
T Consensus 4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~d 83 (276)
T d2bv3a2 4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVD 83 (276)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSS
T ss_pred hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhh
Confidence 44457999999999999999999721 0 111223456666777889999999999999999
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
|.......++-+|++|+|+|+.+.-......- |..... .++|.++++||.|...
T Consensus 84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~-w~~a~~----~~lP~i~fINKmDr~~ 137 (276)
T d2bv3a2 84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAEK----YKVPRIAFANKMDKTG 137 (276)
T ss_dssp CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHH-HHHHHT----TTCCEEEEEECTTSTT
T ss_pred hHHHHHHHHHhhhheEEeccccCCcchhHHHH-HHHHHH----cCCCEEEEEecccccc
Confidence 99999999999999999999987755544333 333333 4899999999999754
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.85 E-value=4.1e-21 Score=128.95 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=97.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC---------------------------------CCCCCCCCccceeEEEEeecC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG---------------------------------GYSEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~---------------------------------~~~~~~~~t~~~~~~~~~~~~ 63 (184)
+++++|+++|+.++|||||+.+|+.. ......+.|.......++..+
T Consensus 1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~ 80 (224)
T d1jnya3 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 80 (224)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence 35789999999999999999999621 011223334445555677888
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCC------HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS------VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
+.++++|+||+..|.......+.-+|++++|+|+.+... .....+.+...... ...++++++||+|+....
T Consensus 81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~---~~~~iIv~iNK~D~~~~~ 157 (224)
T d1jnya3 81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEPP 157 (224)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSST
T ss_pred ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh---CCCceEEEEEcccCCCcc
Confidence 999999999999999999999999999999999986421 11122222211111 235688899999987532
Q ss_pred -CH---HH----HHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 138 -SK---QA----LVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 138 -~~---~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
.. +. +.+.+..........+++++||.+|.|+.+
T Consensus 158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 21 11 111111112334566889999999999853
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=2.7e-21 Score=130.45 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=103.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--C--------------------C-----------CCCCCCccceeEEEEeecC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG--G--------------------Y-----------SEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~--~--------------------~-----------~~~~~~t~~~~~~~~~~~~ 63 (184)
+.+++|+++|+.++|||||+.+|+.. . + ....+-|+......+...+
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~ 83 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 83 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence 45689999999999999999999720 0 0 1224456677778888999
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCC------HHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS------VPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEA 136 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~ 136 (184)
++++++|+||+.+|...+...+..+|++|+|+|+..... .......+..... .++| +++++||+|+.+.
T Consensus 84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iNKmD~~~~ 159 (239)
T d1f60a3 84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKW 159 (239)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH----cCCCeEEEEEECCCCCCC
Confidence 999999999999999999999999999999999975310 0112222222211 3554 7889999998763
Q ss_pred cCH------HHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 137 LSK------QALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 137 ~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
... .++...+.........++++.+|+..|.|+.
T Consensus 160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~ 199 (239)
T d1f60a3 160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI 199 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence 321 1222222111222335678999999998863
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=5.4e-20 Score=119.52 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=97.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCcc-ceeEEEEeecCEEEEEEEcCCccchhHh--HH-------hhcc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTV-GFNMRKVTKGNVTIKLWDLGGQRRFRTM--WE-------RYCR 86 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~-------~~~~ 86 (184)
.-.|+++|.+|+|||||+|+|++.+.... ...|. .............+..+|++|....... .. ....
T Consensus 5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (179)
T d1egaa1 5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 84 (179)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchh
Confidence 34689999999999999999997654211 22222 2333444556677788898885432211 11 1124
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+++++++.|..+. ......+...+.. ...|.++++||+|...... .....+.+.. .....+++++||++
T Consensus 85 ~~~~~l~~~d~~~~--~~~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~---~~~~~~~~~vSA~~ 155 (179)
T d1egaa1 85 DVELVIFVVEGTRW--TPDDEMVLNKLRE----GKAPVILAVNKVDNVQEKADLLPHLQFLAS---QMNFLDIVPISAET 155 (179)
T ss_dssp CEEEEEEEEETTCC--CHHHHHHHHHHHS----SSSCEEEEEESTTTCCCHHHHHHHHHHHHT---TSCCSEEEECCTTT
T ss_pred hcceeEEEEecCcc--chhHHHHHHHhhh----ccCceeeeeeeeeccchhhhhhhHhhhhhh---hcCCCCEEEEeCcC
Confidence 56778888887643 3333333333332 4678899999999866432 2222222211 12345799999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
|+|+++++++|.+.+++
T Consensus 156 g~gi~~L~~~i~~~lpe 172 (179)
T d1egaa1 156 GLNVDTIAAIVRKHLPE 172 (179)
T ss_dssp TTTHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999998864
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.84 E-value=5.6e-20 Score=125.39 Aligned_cols=110 Identities=22% Similarity=0.185 Sum_probs=85.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CC------------------CCCCCccceeEEEEeecCEEEEEEEcCCccchhH
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG--YS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 79 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~--~~------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 79 (184)
-+|+++|+.++|||||+.+++... .. .....|.......+.+.+.+++++||||+.+|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence 369999999999999999997211 00 0122355566677889999999999999999999
Q ss_pred hHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
.....++-+|++|+|+|+.+.-.......| ..... .++|.++++||+|..
T Consensus 83 e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 83 EIRGALEAADAALVAVSAEAGVQVGTERAW-TVAER----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECGGGC
T ss_pred hhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhh----ccccccccccccccc
Confidence 999999999999999999876555544433 33333 479999999999964
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.83 E-value=7.5e-21 Score=128.88 Aligned_cols=159 Identities=19% Similarity=0.197 Sum_probs=90.2
Q ss_pred HhhhhccceeEEEEEcCCCCCHHHHHHHHhcC---------------------------------CCCCCCCCccceeEE
Q 030000 11 LRSLFFKQEMELSLIGLQNAGKTSLVNTIATG---------------------------------GYSEDMIPTVGFNMR 57 (184)
Q Consensus 11 ~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~---------------------------------~~~~~~~~t~~~~~~ 57 (184)
++....+++++|+++|+.++|||||+.+|+.. ........+......
T Consensus 16 ~~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~ 95 (245)
T d1r5ba3 16 LKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRA 95 (245)
T ss_dssp HHHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CC
T ss_pred HHHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccc
Confidence 44455677899999999999999999999620 011112233333444
Q ss_pred EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCH------HHHHHHHHHHhcCCCCCCC-cEEEEEeC
Q 030000 58 KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV------PIARSELHELLMKPSLSGI-PLLVLGNK 130 (184)
Q Consensus 58 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~-~iivv~nK 130 (184)
.+......+.+.|+||+..|..........+|++++|+|+.+.... ......+..... .++ ++++++||
T Consensus 96 ~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~----~~i~~iiv~iNK 171 (245)
T d1r5ba3 96 YFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINK 171 (245)
T ss_dssp EEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEEC
T ss_pred ccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH----cCCCeEEEEEEc
Confidence 5667778999999999999999999999999999999999763100 012222221211 244 47899999
Q ss_pred CCcccccC-H---HHHHHHhCCC------ccCCCceeEEEeeeccCCCHHHHH
Q 030000 131 IDKSEALS-K---QALVDQLGLE------SITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 131 ~D~~~~~~-~---~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
+|+..... . .++.+.+... ......++++++||++|+||.+++
T Consensus 172 mD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~ 224 (245)
T d1r5ba3 172 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 224 (245)
T ss_dssp TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence 99865322 1 2222222110 001235689999999999998764
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=2.2e-20 Score=124.30 Aligned_cols=118 Identities=21% Similarity=0.302 Sum_probs=87.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhh----ccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERY----CRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~----~~~~~~~i~v 94 (184)
+.+|+++|++|||||||+|+|.++++.+. .|.......+...+..+.+||+||++.+...+..+ ...++.++++
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~--tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT--VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 80 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB--CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCe--EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence 57999999999999999999998876532 33344555566777889999999998776655543 4556888999
Q ss_pred EeCC-CCCCHHHHHHHHHHH---hcCCCCCCCcEEEEEeCCCcccccC
Q 030000 95 VDAA-DRDSVPIARSELHEL---LMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 95 ~d~~-~~~~~~~~~~~~~~~---~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
+|+. +..++.....++... .......++|+++++||+|+.....
T Consensus 81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~ 128 (209)
T d1nrjb_ 81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 128 (209)
T ss_dssp EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence 9976 466667666665433 2333446899999999999976543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=2.5e-19 Score=117.02 Aligned_cols=165 Identities=16% Similarity=0.111 Sum_probs=91.7
Q ss_pred HhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--Cccc-eeEEEEeecCEEEEEEEcCCc-c-----c--hhH
Q 030000 11 LRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVG-FNMRKVTKGNVTIKLWDLGGQ-R-----R--FRT 79 (184)
Q Consensus 11 ~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~-~~~~~~~~~~~~~~~~d~~g~-~-----~--~~~ 79 (184)
+++++..+.++|+++|.+|+|||||+|++++.+...... ++.. .........+......+.++. . . ...
T Consensus 8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (188)
T d1puia_ 8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQR 87 (188)
T ss_dssp GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHH
T ss_pred hhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhh
Confidence 355677788999999999999999999998766432221 1111 222222233333333333221 1 1 111
Q ss_pred h---HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCC-CccCCCc
Q 030000 80 M---WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL-ESITDRE 155 (184)
Q Consensus 80 ~---~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~ 155 (184)
. .......+..++.+.+........ ...++..... ...++++++||+|+.+........+.+.. .......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~ 162 (188)
T d1puia_ 88 ALGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 162 (188)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred hhhhhhhhhhheeEEEEeecccccchhH-HHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCC
Confidence 1 111223445566677765544333 2333333322 36789999999999775544333222221 1112234
Q ss_pred eeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 156 VCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 156 ~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
.+++.+||++|.||+++++.|.+.+
T Consensus 163 ~~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 163 VQVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999987653
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=3.4e-17 Score=118.20 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=92.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------CccceeEEEEeecCEEEEEEEcCCccchhHh-----HHhh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI-------PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM-----WERY 84 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----~~~~ 84 (184)
+.+++|+|+|.+|+|||||+|++++........ .|....... ......+.+|||||....... ....
T Consensus 54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~-~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~ 132 (400)
T d1tq4a_ 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMK 132 (400)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee-ccCCCeEEEEeCCCcccccccHHHHHHHhh
Confidence 457999999999999999999999754322211 122211111 123345889999995543222 2223
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc---------cCHHHH--------HHHhC
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA---------LSKQAL--------VDQLG 147 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~---------~~~~~~--------~~~~~ 147 (184)
...+|.++++.|.. +......+...+.. .++|+++|.||+|.... ...++. .+.+.
T Consensus 133 ~~~~d~~l~~~~~~----~~~~d~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~ 205 (400)
T d1tq4a_ 133 FYEYDFFIIISATR----FKKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 205 (400)
T ss_dssp GGGCSEEEEEESSC----CCHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhcceEEEEecCCC----CCHHHHHHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence 55688888887742 22233333333333 47899999999996421 111111 11111
Q ss_pred CCccCCCceeEEEeeecc--CCCHHHHHHHHHHHhhhc
Q 030000 148 LESITDREVCCYMISCKD--SINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~--~~~i~~l~~~i~~~~~~~ 183 (184)
. ......++|.+|..+ ..++.++.+.+.+.++..
T Consensus 206 ~--~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~ 241 (400)
T d1tq4a_ 206 E--NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 241 (400)
T ss_dssp H--TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred H--cCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence 1 112344678888754 458999999999887653
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=1.1e-16 Score=112.49 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=80.7
Q ss_pred ee-EEEEEcCCCCCHHHHHHHHhcC--C----------------CCCCCCCccceeEEEE----------------eecC
Q 030000 19 EM-ELSLIGLQNAGKTSLVNTIATG--G----------------YSEDMIPTVGFNMRKV----------------TKGN 63 (184)
Q Consensus 19 ~~-~i~v~G~~~~GKstli~~~~~~--~----------------~~~~~~~t~~~~~~~~----------------~~~~ 63 (184)
.+ +|+|+|+.++|||||+.+++.. . .+....-|+......+ ++..
T Consensus 16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 95 (341)
T d1n0ua2 16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 95 (341)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence 45 5999999999999999999721 0 0111122333222222 2245
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+.++++||||+..|.......++-+|++++|+|+.++-..+....+.. ... .++|+++++||+|...
T Consensus 96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~-a~~----~~~p~i~viNKiDr~~ 162 (341)
T d1n0ua2 96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG----ERIKPVVVINKVDRAL 162 (341)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCEEEEEEECHHHHH
T ss_pred eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHH-HHH----cCCCeEEEEECccccc
Confidence 789999999999999999999999999999999988766654444333 333 4799999999999754
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.67 E-value=5.1e-18 Score=115.15 Aligned_cols=119 Identities=17% Similarity=0.019 Sum_probs=73.7
Q ss_pred EEEEEEEcCCccchhHhHHh---h--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 64 VTIKLWDLGGQRRFRTMWER---Y--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~---~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
..+.+.|+||+..+...... . ....+.+++++|+.........................|.++++||+|+.....
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~ 174 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE 174 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHH
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHH
Confidence 55889999998875442222 1 224568999999876555444332222111111113689999999999987543
Q ss_pred HHHHHHH----------hCCC---------------ccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 139 KQALVDQ----------LGLE---------------SITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 139 ~~~~~~~----------~~~~---------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
....... +... .......+++++||++|+|++++++.|.++.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~~ 243 (244)
T d1yrba1 175 KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 243 (244)
T ss_dssp HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3222111 1000 001234679999999999999999999998765
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.66 E-value=3.5e-15 Score=101.64 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=77.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEeecCEEEEEEEcCCccc-------hhHhHHhh--
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRR-------FRTMWERY-- 84 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~~~~~~-- 84 (184)
...++|+++|.+|+|||||+|++++..... ....|...........+..+.++||||..+ ........
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~ 109 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 109 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHh
Confidence 467999999999999999999999866432 233455566666778889999999999432 11122222
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccc
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~ 136 (184)
....+++++|++++...--......+..+...++ .--.++++|+||+|...+
T Consensus 110 ~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~ 162 (257)
T d1h65a_ 110 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 162 (257)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCc
Confidence 2346889999988654221222222222222111 112578999999998753
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=9e-16 Score=107.49 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=90.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc------CCC-----CCCCC-----------------CccceeEEEE---------
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT------GGY-----SEDMI-----------------PTVGFNMRKV--------- 59 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~------~~~-----~~~~~-----------------~t~~~~~~~~--------- 59 (184)
.+.++|+|.|+||+|||||++++.. .+. .+... ..........
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~ 131 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 131 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence 4689999999999999999999972 110 00000 0000111111
Q ss_pred -----------eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEE
Q 030000 60 -----------TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 128 (184)
Q Consensus 60 -----------~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~ 128 (184)
+..++.+.+++|.|.-... ......+|.+++|.++...+..+.....+.++ +-++|+
T Consensus 132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~Vv 199 (327)
T d2p67a1 132 SQRARELMLLCEAAGYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLIVI 199 (327)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHH---------CSEEEE
T ss_pred hhhhhHHHHHHHhcCCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhcc---------ccEEEE
Confidence 1123567777877753321 22345699999999987666665555554443 348889
Q ss_pred eCCCcccccCH----HHHHHHhCC--CccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 129 NKIDKSEALSK----QALVDQLGL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 129 nK~D~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
||+|....... +++...+.. ........+++.|||++|+|++++++.|.++..
T Consensus 200 NKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~ 258 (327)
T d2p67a1 200 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 258 (327)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence 99998654332 222222221 122344567999999999999999999987654
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.60 E-value=4.7e-15 Score=103.73 Aligned_cols=153 Identities=12% Similarity=0.147 Sum_probs=92.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC----C------------------CCCCCC-----C-ccceeEEE----------
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG----G------------------YSEDMI-----P-TVGFNMRK---------- 58 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~----~------------------~~~~~~-----~-t~~~~~~~---------- 58 (184)
.+.++|+|.|+||+|||||++++... . ...... . ........
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 128 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence 35799999999999999999999821 0 000000 0 00011111
Q ss_pred ----------EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEE
Q 030000 59 ----------VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 128 (184)
Q Consensus 59 ----------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~ 128 (184)
.+..++.+.+++|.|........ ..-+|.+++|..+...+..+....-+. .++-++|+
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~---~~~~D~~v~v~~p~~GD~iQ~~k~gil---------E~aDi~vv 196 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQSETAV---ADLTDFFLVLMLPGAGDELQGIKKGIF---------ELADMIAV 196 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH---HTTSSEEEEEECSCC------CCTTHH---------HHCSEEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEeehhhhhhhhhh---hcccceEEEEeeccchhhhhhhhhhHh---------hhhheeeE
Confidence 11234788899998865433333 334999999999877655543322222 34458999
Q ss_pred eCCCcccccCHH-----HHHHHhCCC--ccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 129 NKIDKSEALSKQ-----ALVDQLGLE--SITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 129 nK~D~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
||+|+....... .....+... .......+++.+||++|+|+++++++|.++..
T Consensus 197 NKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 197 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 256 (323)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred eccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 999986644332 122222222 12234567999999999999999999987754
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.33 E-value=7.8e-12 Score=87.09 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=73.3
Q ss_pred hHHHHHHHHhhhhcc--ceeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccc-eeEEE--------------------
Q 030000 3 FLDSILNWLRSLFFK--QEMELSLIGLQNAGKTSLVNTIATGGY-SEDMIPTVG-FNMRK-------------------- 58 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~-~~~~~-------------------- 58 (184)
+++.+.+.+..+... .-.+|+|+|..++|||||+|++++..+ +....++.. .....
T Consensus 6 ~~n~l~d~~~~~~~~~~~lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~ 85 (306)
T d1jwyb_ 6 VINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFL 85 (306)
T ss_dssp HHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEES
T ss_pred HHHHHHHHHHHhCcCCCCCCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHh
Confidence 444454445444222 235899999999999999999997765 222222111 10000
Q ss_pred ---------------------------------------Eee-cCEEEEEEEcCCccc-------------hhHhHHhhc
Q 030000 59 ---------------------------------------VTK-GNVTIKLWDLGGQRR-------------FRTMWERYC 85 (184)
Q Consensus 59 ---------------------------------------~~~-~~~~~~~~d~~g~~~-------------~~~~~~~~~ 85 (184)
+.. ....+.++|+||... .......++
T Consensus 86 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi 165 (306)
T d1jwyb_ 86 HKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI 165 (306)
T ss_dssp SSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH
T ss_pred hcCCceecCHHHHHHHHHHHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHH
Confidence 000 013478999999432 234566678
Q ss_pred cCCCEEEEEE-eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 86 RGVSAILYVV-DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 86 ~~~~~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
.+++.+++++ +......-.....+...+ .....++++|+||+|.....
T Consensus 166 ~~~~~~il~v~~~~~~~~~~~~~~~~~~~----~~~~~r~i~Vitk~D~~~~~ 214 (306)
T d1jwyb_ 166 KKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVITKLDLMDKG 214 (306)
T ss_dssp HSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEEECTTSSCSS
T ss_pred hCCCceeEEeecccccccccHHHHHHHHh----CcCCCeEEEEEeccccccch
Confidence 8898766655 443322222223333322 22456899999999987543
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=3e-11 Score=83.78 Aligned_cols=131 Identities=16% Similarity=0.171 Sum_probs=77.6
Q ss_pred hHHHHHHHHhhhhcc---ceeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccc-eeEEEEe-----------------
Q 030000 3 FLDSILNWLRSLFFK---QEMELSLIGLQNAGKTSLVNTIATGGY-SEDMIPTVG-FNMRKVT----------------- 60 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~---~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~-~~~~~~~----------------- 60 (184)
+++.+-+.++++... ...+|+|+|+.++|||||+|++++..+ +....++.. .....+.
T Consensus 7 ~~~~l~d~l~~lg~~~~~~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (299)
T d2akab1 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 86 (299)
T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHHcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCee
Confidence 444555555555222 346899999999999999999998775 444433322 1111100
Q ss_pred ----------------------------------e-cCEEEEEEEcCCccc-------------hhHhHHhhccCCCE-E
Q 030000 61 ----------------------------------K-GNVTIKLWDLGGQRR-------------FRTMWERYCRGVSA-I 91 (184)
Q Consensus 61 ----------------------------------~-~~~~~~~~d~~g~~~-------------~~~~~~~~~~~~~~-~ 91 (184)
. ....+.++|+||... .......++.+.+. +
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~i 166 (299)
T d2akab1 87 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 166 (299)
T ss_dssp CCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhhCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCcccee
Confidence 0 012378999999321 22345556677775 5
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
++|.+++..........+...+ .....++++|+||+|.....
T Consensus 167 l~v~~a~~~~~~~~~~~~~~~~----~~~~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 167 LAVSPANSDLANSDALKIAKEV----DPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp EEEEESSSCGGGCHHHHHHHHH----CTTCSSEEEEEECGGGSCTT
T ss_pred eeecccccchhhhHHHHHHHHh----CcCCCceeeEEeccccccch
Confidence 5566665444443333333332 33457899999999987753
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.19 E-value=2.2e-11 Score=85.27 Aligned_cols=80 Identities=24% Similarity=0.291 Sum_probs=45.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEE----e--------------------ecCEEEEEEEcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKV----T--------------------KGNVTIKLWDLGG 73 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~----~--------------------~~~~~~~~~d~~g 73 (184)
++|+++|.|+||||||+|++.+.+......| |...+.... + .....++++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 5899999999999999999998765443333 333222211 0 1236699999999
Q ss_pred ccchh-------HhHHhhccCCCEEEEEEeCCC
Q 030000 74 QRRFR-------TMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 74 ~~~~~-------~~~~~~~~~~~~~i~v~d~~~ 99 (184)
.-... ...-..++++|+++.|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 43321 111233678999999999863
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.15 E-value=5.5e-11 Score=81.58 Aligned_cols=80 Identities=24% Similarity=0.283 Sum_probs=55.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEeecC-----------------EEEEEEEcCCccch--
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRRF-- 77 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~-- 77 (184)
.+||+++|.|+||||||++++.+.+..... ..|...+...+...+ ..+.++|.||.-..
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 379999999999999999999977654333 245555555554332 35889999994332
Q ss_pred -----hHhHHhhccCCCEEEEEEeCC
Q 030000 78 -----RTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 78 -----~~~~~~~~~~~~~~i~v~d~~ 98 (184)
....-..++++|+++.|+|+.
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cCCCccHHHHHHHHhccceEEEeecc
Confidence 224556688999999999874
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.14 E-value=2e-10 Score=79.44 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=60.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeec-----------------CEEEEEEEcCCccc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQRR 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~-----------------~~~~~~~d~~g~~~ 76 (184)
+..++|+++|.|+||||||++++++... ...+..|...+...+... ...+.+.|.||...
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 4569999999999999999999997643 222334666555555433 25689999998332
Q ss_pred -------hhHhHHhhccCCCEEEEEEeCCC
Q 030000 77 -------FRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 77 -------~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
.....-..++++|+++.|+|+.+
T Consensus 88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccccHHHHHHHhhccceeEEEEeccC
Confidence 23455666899999999999865
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.78 E-value=4.1e-09 Score=71.87 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=35.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEeecCEEEEEEEcCCc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~ 74 (184)
....++|+|+|.|++|||||+|++.+.+... .++.|.+..... .+..+.++||||.
T Consensus 109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~---~~~~~~l~DTPGi 167 (273)
T d1puja_ 109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK---VGKELELLDTPGI 167 (273)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE---ETTTEEEEECCCC
T ss_pred CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEE---CCCCeEEecCCCc
Confidence 3467999999999999999999999765421 122233322221 2234889999994
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.67 E-value=3.5e-08 Score=64.64 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=62.7
Q ss_pred hccCCCEEEEEEeCCCC-CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEee
Q 030000 84 YCRGVSAILYVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
...+.|.+++|+.+.+| -+...+.+++..... .++|.++|+||+|+.++.+.+.+.+.... ....++++.+|
T Consensus 7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~---~~~~~~v~~vS 79 (225)
T d1u0la2 7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEI---YSGLYPIVKTS 79 (225)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH---HTTTSCEEECC
T ss_pred CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhcc---cccceeEEEec
Confidence 35688999999998764 455666777666654 48999999999999876554444333321 11224689999
Q ss_pred eccCCCHHHHHHHHH
Q 030000 163 CKDSINIDAVIDWLI 177 (184)
Q Consensus 163 a~~~~~i~~l~~~i~ 177 (184)
++++.|++++.+++.
T Consensus 80 a~~~~g~~~L~~~l~ 94 (225)
T d1u0la2 80 AKTGMGIEELKEYLK 94 (225)
T ss_dssp TTTCTTHHHHHHHHS
T ss_pred cccchhHhhHHHHhc
Confidence 999999999988774
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.61 E-value=3.3e-08 Score=64.79 Aligned_cols=54 Identities=26% Similarity=0.226 Sum_probs=33.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSED----------MIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
..+++|++|+|||||+|++.+...... ...|.......+..+ -.++||||...+
T Consensus 97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~ 160 (225)
T d1u0la2 97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL 160 (225)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence 568999999999999999985432111 112222333333322 468899996554
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.58 E-value=4.1e-08 Score=66.82 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=67.0
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeE
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCC 158 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
......++.+|++++|+|+.++.+..+ ..+..+++ ++|.++|+||+|+.+....+++.+.+... ....
T Consensus 7 r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~-----~~~~ 74 (273)
T d1puja_ 7 REVTEKLKLIDIVYELVDARIPMSSRN--PMIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFENQ-----GIRS 74 (273)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHHTT-----TCCE
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHHc-----CCCeEEEEECccCCchHHHHHHHHHHHhc-----CCcc
Confidence 345667899999999999977655443 33444442 67999999999998876666666666432 2357
Q ss_pred EEeeeccCCCHHHHHHHHHHHhh
Q 030000 159 YMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 159 ~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
+.+|++++.++.++.+.+.+.+.
T Consensus 75 i~isa~~~~~~~~~~~~~~~~l~ 97 (273)
T d1puja_ 75 LSINSVNGQGLNQIVPASKEILQ 97 (273)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHH
T ss_pred ceeecccCCCccccchhhhhhhh
Confidence 89999999999888877766554
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=2.8e-07 Score=60.64 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-.+|.|.-|||||||+++++..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 3578999999999999999864
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.36 E-value=5e-08 Score=64.11 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=60.3
Q ss_pred ccCCCEEEEEEeCCCC-CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 85 CRGVSAILYVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
..+.|.+++|+++.+| -+...+.+++..... .+++.++|+||+|+.+..+.....+.+.. .+...+++++.+|+
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~-~y~~~g~~v~~~Sa 82 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAE-DYRNIGYDVYLTSS 82 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHH-HHHHHTCCEEECCH
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHHH-HHhhccccceeeec
Confidence 5688999999998764 566677777666544 48899999999999875443332222211 11122457999999
Q ss_pred ccCCCHHHHHHHH
Q 030000 164 KDSINIDAVIDWL 176 (184)
Q Consensus 164 ~~~~~i~~l~~~i 176 (184)
+++.|++++.+++
T Consensus 83 ~~~~gl~~L~~~l 95 (231)
T d1t9ha2 83 KDQDSLADIIPHF 95 (231)
T ss_dssp HHHTTCTTTGGGG
T ss_pred CChhHHHHHHHhh
Confidence 9999998887665
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.36 E-value=3.7e-08 Score=64.76 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
..+++|++|+|||||+|+|.+.
T Consensus 99 ~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 99 TTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred eEEEECCCCccHHHHHHhhccH
Confidence 4578999999999999999864
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.25 E-value=1.9e-07 Score=60.67 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=36.6
Q ss_pred cCEEEEEEEcCCccchhH----hHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 62 GNVTIKLWDLGGQRRFRT----MWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
.++++.++||+|...... .+... ..+.+-+++|.|++... .... ....+.+... + -=+++||.|...
T Consensus 91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~--~~~~-~~~~f~~~~~---~-~~~I~TKlDe~~ 163 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALS-VARAFDEKVG---V-TGLVLTKLDGDA 163 (207)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH--HHHH-HHHHHHHHTC---C-CEEEEECGGGCS
T ss_pred ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccch--hHHH-HHHHHHhhCC---C-CeeEEeecCccc
Confidence 346799999999443222 12221 23567899999986542 2222 2222222111 1 136689999644
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.23 E-value=3.2e-07 Score=58.10 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
+||+++|++|||||||++.+.+
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 5899999999999999999984
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.20 E-value=6.3e-07 Score=58.18 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=15.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+.+.-|+++|++|+||||.+-.|.
T Consensus 9 ~k~p~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 9 DKIPYVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp SSSSEEEEEECSCCC----HHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3445567889999999999877665
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.20 E-value=3e-07 Score=59.87 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=20.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+++.-|+++|++|+||||.+-.+.
T Consensus 8 ~~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 8 PEPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4556778999999999999776665
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.15 E-value=6.4e-07 Score=58.01 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=17.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.--|+++|++||||||.+-.|.
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA 27 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLG 27 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3456899999999999876665
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=1.1e-06 Score=57.04 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=18.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.-|+++|++|+||||.+-.+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4557899999999999887775
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=7.5e-06 Score=55.41 Aligned_cols=69 Identities=25% Similarity=0.272 Sum_probs=46.6
Q ss_pred HHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCccceeEEEE---eecCEEEEEEEcCCcc
Q 030000 6 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSED-----MIPTVGFNMRKV---TKGNVTIKLWDLGGQR 75 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~-----~~~t~~~~~~~~---~~~~~~~~~~d~~g~~ 75 (184)
...+.++.. ..+-.-|.|+|+.++|||+|+|.+++....-. ...|.|+-.+.. ...+..+.++||.|..
T Consensus 20 e~l~~l~~~-~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~ 96 (277)
T d1f5na2 20 EALKILSAI-TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 96 (277)
T ss_dssp HHHHHHHTC-CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred HHHHHHHcC-CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence 344555554 22334568999999999999999997653222 235777655543 2456789999999943
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=98.06 E-value=1.2e-06 Score=55.10 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=22.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
++.++|+++|++||||||+.+.|.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La 26 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIA 26 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHH
Confidence 467899999999999999999996
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=98.04 E-value=9.8e-07 Score=55.33 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.++|+++|++||||||+++.|.
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La 25 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELA 25 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999996
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.02 E-value=1e-06 Score=55.92 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
-+|+|.|++|||||||+++|.
T Consensus 8 K~I~i~G~~GsGKTTla~~La 28 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLA 28 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999997
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.99 E-value=1.3e-06 Score=55.87 Aligned_cols=23 Identities=17% Similarity=0.344 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
++++|+++|++||||||+++.|.
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La 24 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIK 24 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 56889999999999999999886
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=1.9e-06 Score=53.82 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
-|+|+|.+|||||||++++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~ 23 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLI 23 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999997
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.96 E-value=2.3e-06 Score=54.70 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.++|+++|+|||||||++..|.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999986
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.94 E-value=2.5e-06 Score=54.07 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++|+|+|+|||||||+++.|.
T Consensus 1 m~I~i~G~pGSGKsT~a~~La 21 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIV 21 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999885
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.93 E-value=5.7e-06 Score=52.88 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=24.7
Q ss_pred HHHhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..........++-|+|.|++|||||||++.|.
T Consensus 12 ~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 12 KTILAIKTAGRLVLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp HHHHTSCCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred HHHHhccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 33333444556778999999999999999996
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.92 E-value=6.9e-06 Score=54.69 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+...|++.|++|+|||++++.+..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhh
Confidence 445699999999999999999973
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.91 E-value=3.4e-06 Score=53.93 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+-++|+++|+|||||||+...|.
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La 27 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRIT 27 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999997
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.89 E-value=3.5e-06 Score=53.45 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++|+++|+|||||||++..|.
T Consensus 1 M~I~i~G~pGSGKsT~a~~La 21 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIV 21 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999887
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.88 E-value=3.6e-06 Score=51.64 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
|++.|++||||||+++.+..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999863
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.88 E-value=3.8e-06 Score=53.23 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++|+++|++||||||+.+.|.
T Consensus 1 m~I~i~G~pGsGKsT~a~~La 21 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLA 21 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999986
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.85 E-value=5.1e-06 Score=53.19 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+++..|+|+|++||||||+++.|.
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La 27 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345677999999999999999997
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=4.5e-06 Score=52.77 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++|+++|++||||||.++.|.
T Consensus 1 m~I~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999886
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.81 E-value=5.7e-06 Score=52.40 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.++|+|+|++||||||+++.|.
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La 23 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQ 23 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999996
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.78 E-value=6e-06 Score=51.56 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
|++.|++||||||+++.|.
T Consensus 5 I~i~G~~GsGKTTva~~L~ 23 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLA 23 (176)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999997
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.75 E-value=7.7e-06 Score=50.97 Aligned_cols=20 Identities=25% Similarity=0.615 Sum_probs=18.0
Q ss_pred EE-EEEcCCCCCHHHHHHHHh
Q 030000 21 EL-SLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i-~v~G~~~~GKstli~~~~ 40 (184)
|| .|+|.+|||||||++++.
T Consensus 2 kii~I~G~~gSGKTTli~~l~ 22 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWV 22 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 44 699999999999999997
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.73 E-value=9.5e-06 Score=50.99 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+++.-|+++|.+||||||++..+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456678999999999999999996
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=1e-05 Score=51.72 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
++.|+|+|++||||||.+..+.
T Consensus 1 p~iI~i~GppGSGKsT~a~~La 22 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIV 22 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=1.1e-05 Score=49.89 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|+++|++||||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKSTvak~La 23 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLA 23 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999996
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.67 E-value=1.2e-05 Score=51.50 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=20.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
++.--|+++|++||||||++..|.
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La 29 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLV 29 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 344557899999999999999997
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=1.2e-05 Score=50.59 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|.++|++|+|||||+..+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~ 22 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 37899999999999999997
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=1.1e-05 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
++.=+|+|+|+.|||||||++.+.+
T Consensus 27 ~~Ge~vaIvG~sGsGKSTLl~ll~g 51 (241)
T d2pmka1 27 KQGEVIGIVGRSGSGKSTLTKLIQR 51 (241)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999974
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.63 E-value=1.1e-05 Score=50.32 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
.+|+++|.+||||||+.+.+.
T Consensus 2 p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 468899999999999988885
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.62 E-value=1.8e-05 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=20.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+.+-|.++|.+||||||+.+.|.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345788999999999999998886
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.62 E-value=1.5e-05 Score=51.45 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
.-|+++|.|||||||+.++|.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~ 23 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLT 23 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 347899999999999999997
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.61 E-value=1.7e-05 Score=52.93 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.=.++++|++|||||||++.+.+
T Consensus 40 ~Ge~iaivG~sGsGKSTLl~ll~g 63 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTIASLITR 63 (253)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 345789999999999999999973
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.59 E-value=2.1e-05 Score=50.59 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.++++|+.|||||||++.+.+
T Consensus 29 i~~l~G~NGsGKSTLl~~i~g 49 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTIST 49 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 478999999999999999974
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=1.9e-05 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
=-++++|+.|||||||++.+.+
T Consensus 27 ei~~liGpsGsGKSTLl~~i~G 48 (232)
T d2awna2 27 EFVVFVGPSGCGKSTLLRMIAG 48 (232)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 3578999999999999999974
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.58 E-value=1.8e-05 Score=49.92 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
|+|.|.+||||||+++.+.
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999999885
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=2e-05 Score=52.52 Aligned_cols=24 Identities=17% Similarity=0.345 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 39 ~Ge~vaivG~sGsGKSTLl~li~g 62 (251)
T d1jj7a_ 39 PGEVTALVGPNGSGKSTVAALLQN 62 (251)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 445789999999999999999973
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.57 E-value=2.2e-05 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
=-++++|+.|||||||++.+.+
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~g 53 (230)
T d1l2ta_ 32 EFVSIMGPSGSGKSTMLNIIGC 53 (230)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCcchhhHhccC
Confidence 3578999999999999998864
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.57 E-value=1.8e-05 Score=52.37 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.=.++++|+.|||||||++.+.+
T Consensus 26 ~~Ge~vaivG~sGsGKSTLl~ll~g 50 (242)
T d1mv5a_ 26 QPNSIIAFAGPSGGGKSTIFSLLER 50 (242)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3445789999999999999999973
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=2e-05 Score=49.04 Aligned_cols=19 Identities=26% Similarity=0.635 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
++++|++||||||+.+.|.
T Consensus 9 ivl~G~~GsGKsT~a~~La 27 (171)
T d1knqa_ 9 YVLMGVSGSGKSAVASEVA 27 (171)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999986
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.56 E-value=2.2e-05 Score=49.93 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030000 22 LSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~ 42 (184)
|+|+|++|||||||+++|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999743
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.55 E-value=2.1e-05 Score=49.15 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
|++.|++||||||+.+.+..
T Consensus 7 I~l~G~~GsGKSTia~~La~ 26 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALAN 26 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999863
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.55 E-value=1.9e-05 Score=48.96 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
+|+++|.+||||||+.+.+.
T Consensus 2 ~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999885
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.54 E-value=2.3e-05 Score=49.59 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
|+++|++||||||+++.+..
T Consensus 5 ivl~GpsG~GK~tl~~~L~~ 24 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRE 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999999974
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.54 E-value=2.5e-05 Score=52.90 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.=.++|+|+.|||||||++.+.+
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~G 84 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILG 84 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 344689999999999999999984
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.52 E-value=2.6e-05 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 33 e~~~liGpsGaGKSTLl~~i~Gl 55 (239)
T d1v43a3 33 EFLVLLGPSGCGKTTTLRMIAGL 55 (239)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 35789999999999999999743
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.52 E-value=2.7e-05 Score=51.27 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-++++|+.|||||||++.+.+
T Consensus 26 ~~~liGpnGaGKSTll~~i~G 46 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 356899999999999999984
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.52 E-value=3.7e-05 Score=50.67 Aligned_cols=36 Identities=25% Similarity=0.149 Sum_probs=25.1
Q ss_pred HHHHHHHhhhh--ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 5 DSILNWLRSLF--FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 5 ~~~~~~~~~~~--~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.+..++.... .+....+++.|+||+||||+++.+.
T Consensus 19 ~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la 56 (238)
T d1in4a2 19 KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 56 (238)
T ss_dssp HHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 34445544332 2223468999999999999999997
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=3.2e-05 Score=50.10 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
++-|+|.|++|||||||.+.|.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 5779999999999999999885
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.50 E-value=2.8e-05 Score=48.54 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
|++.|++||||||+.+.|..
T Consensus 6 I~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56779999999999999973
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=97.49 E-value=0.00041 Score=42.43 Aligned_cols=67 Identities=22% Similarity=0.164 Sum_probs=40.3
Q ss_pred HHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEeecCEEEEEEEcCCc
Q 030000 7 ILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~d~~g~ 74 (184)
+.+.+.....++..-|++-|+-|||||||++.+...--. .-.+||.... ..+......+.=+|.-..
T Consensus 21 la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~-~~Y~~~~~~i~H~DlYRl 89 (158)
T d1htwa_ 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV-EEYNIAGKMIYHFDLYRL 89 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCE-EEEEETTEEEEEEECTTC
T ss_pred HHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEE-EeeccCCceEEEEEEecc
Confidence 333333333345567889999999999999999853222 2334555532 334455556665676543
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=3e-05 Score=48.90 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
|+++|++|+||+||+++|+.
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.49 E-value=5.1e-05 Score=50.01 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...+++.|+||+||||+++.+.+
T Consensus 35 ~~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 35 LEHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999973
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.48 E-value=3.1e-05 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.=.++++|+.|||||||++.+.+-
T Consensus 29 Ge~~~liG~sGaGKSTll~~i~gl 52 (240)
T d1g2912 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 345789999999999999999743
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=2.9e-05 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
=-++++|+.|||||||++.+.+
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~G 53 (240)
T d3dhwc1 32 QIYGVIGASGAGKSTLIRCVNL 53 (240)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHcC
Confidence 4578999999999999999974
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.47 E-value=3.3e-05 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.+.|+|.|++||||||....|.
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La 24 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIA 24 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.47 E-value=4.8e-05 Score=52.54 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
....+|+|.|++|||||||++.++.-
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HhCCCEEEEeeccccchHHHHHHhhh
Confidence 34457999999999999999999843
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.47 E-value=3.4e-05 Score=49.19 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
|+|+|++|||||||+++|.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~ 21 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLF 21 (190)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999986
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.46 E-value=3.7e-05 Score=48.65 Aligned_cols=21 Identities=19% Similarity=0.577 Sum_probs=17.6
Q ss_pred eEE-EEEcCCCCCHHHHHHHHh
Q 030000 20 MEL-SLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i-~v~G~~~~GKstli~~~~ 40 (184)
+|| +|.|.+||||||+++.+.
T Consensus 1 mkiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 1 MKIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 366 467999999999999885
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.46 E-value=3.4e-05 Score=48.21 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
|+++|.+||||||+.+.+.
T Consensus 5 Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp EEEESCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999999985
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=97.45 E-value=4.2e-05 Score=48.63 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+++-|+|.|.+||||||+++.|...
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 5678999999999999999988643
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=9.4e-05 Score=47.00 Aligned_cols=26 Identities=31% Similarity=0.389 Sum_probs=21.8
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..+..-+++++|++|+|||+++..+.
T Consensus 39 ~r~~k~n~lLvG~pGVGKTalv~~LA 64 (195)
T d1jbka_ 39 QRRTKNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp TSSSSCEEEEECCTTSCHHHHHHHHH
T ss_pred hccCCCCeEEEecCCcccHHHHHHHH
Confidence 33456689999999999999998886
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.44 E-value=9e-05 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..-.+++.|++|+|||++++.+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999873
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.43 E-value=3.7e-05 Score=50.81 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++++|+.|||||||++.+.+-
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl 55 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4689999999999999999743
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.43 E-value=3.9e-05 Score=48.98 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.--|+++|+|||||||++..|.
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La 29 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIV 29 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3457899999999999999997
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.43 E-value=8.3e-05 Score=48.69 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...+++.|++|+||||+++.+..
T Consensus 45 ~~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 45 MPHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999998873
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.43 E-value=2.2e-05 Score=52.34 Aligned_cols=25 Identities=24% Similarity=0.598 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
++.=+++|+|+.|||||||++.+.+
T Consensus 42 ~~Ge~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 42 EKGETVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHh
Confidence 3445789999999999999998863
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.42 E-value=2.2e-05 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 27 e~~~liGpsGaGKSTll~~l~Gl 49 (229)
T d3d31a2 27 EYFVILGPTGAGKTLFLELIAGF 49 (229)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35789999999999999999854
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.41 E-value=3.2e-05 Score=49.42 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=23.5
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
...++++-|+|-|..||||||+++.|.
T Consensus 4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~ 30 (197)
T d2vp4a1 4 AEGTQPFTVLIEGNIGSGKTTYLNHFE 30 (197)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 345677889999999999999999986
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=4.3e-05 Score=49.28 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030000 22 LSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~ 42 (184)
|+|+||+|||||||++.++..
T Consensus 5 ivi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 5 YIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 679999999999999999843
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=2.9e-05 Score=51.07 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
=-++++|+.|||||||++.+.+
T Consensus 26 ei~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 26 EILHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp CEEECBCCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3578999999999999999985
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=97.39 E-value=0.00024 Score=50.15 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=20.4
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..+..-+++++|++|+|||+++..+.
T Consensus 39 ~r~~k~n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 39 LRRTKNNPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp HCSSCCCCEEEECTTSCHHHHHHHHH
T ss_pred hcCCCCCCeEECCCCCCHHHHHHHHH
Confidence 33456678999999999999886554
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=0.00011 Score=49.26 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=22.3
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+..+..-+++++|++|+|||+++..+.
T Consensus 34 L~r~~k~n~lLVG~~GvGKTalv~~la 60 (268)
T d1r6bx2 34 LCRRRKNNPLLVGESGVGKTAIAEGLA 60 (268)
T ss_dssp HTSSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCccCCcEEECCCCCcHHHHHHHHH
Confidence 334456789999999999999998886
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.37 E-value=4.9e-05 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.=.++++|+.|||||||++.+.+
T Consensus 28 GEi~~iiG~sGsGKSTLl~~i~G 50 (258)
T d1b0ua_ 28 GDVISIIGSSGSGKSTFLRCINF 50 (258)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHc
Confidence 34578999999999999999974
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.36 E-value=6.1e-05 Score=49.66 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 29 ei~glvG~nGaGKSTLl~~l~G~ 51 (238)
T d1vpla_ 29 EIFGLIGPNGAGKTTTLRIISTL 51 (238)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35689999999999999999744
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=2.3e-05 Score=49.85 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
...|.++|.+||||||+.+.|.
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999999995
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.36 E-value=8.9e-05 Score=48.61 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 4 LDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.+.+++... +...+++.|++|+||||+++.+..
T Consensus 21 ~~~l~~~i~~~---~~~~lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 21 VTVLKKTLKSA---NLPHMLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp HHHHHHHTTCT---TCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCCeEEEECCCCCChHHHHHHHHH
Confidence 34455555433 233489999999999999999974
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.34 E-value=6.4e-05 Score=50.33 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-|++.|+||||||||+..+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~ 54 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFE 54 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999974
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.33 E-value=5.6e-05 Score=50.39 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++++|+.|||||||++.+.+-
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHCC
Confidence 4689999999999999999843
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.27 E-value=2.9e-05 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.=.++++|+.|||||||++.+.+-
T Consensus 31 Ge~~~iiG~sGsGKSTll~~i~gl 54 (242)
T d1oxxk2 31 GERFGILGPSGAGKTTFMRIIAGL 54 (242)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Confidence 346789999999999999999753
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.26 E-value=0.00013 Score=47.52 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
..+++.|++|+||||+++.+.
T Consensus 37 ~~~ll~Gp~G~GKTt~a~~la 57 (224)
T d1sxjb2 37 PHMIISGMPGIGKTTSVHCLA 57 (224)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCchhhHHHHH
Confidence 458999999999999999886
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.26 E-value=0.00015 Score=46.73 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.2
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
...+.+-|.+.|.+|||||||.+.|.
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34566788999999999999999986
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=97.21 E-value=0.00017 Score=47.86 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+--|++.|++|+|||++++.+..
T Consensus 42 ~~giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHH
Confidence 34599999999999999999983
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.00019 Score=48.97 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.++-|+|.|++|||||||.+.+.
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHH
Confidence 457889999999999999988875
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.19 E-value=0.00024 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
-.+++.|++|+||||++..+.+
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~ 74 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQ 74 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999984
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.19 E-value=0.0017 Score=42.17 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=44.0
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCccccc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEAL 137 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~ 137 (184)
.+.+.++|+|+.... .....+..+|.++++.... ..++.........+. . .+.|++ +++|+.|..+..
T Consensus 111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~-~---~~~~~~giv~N~~~~~~~~ 179 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLK-K---AGLAILGFVLNRYGRSDRD 179 (237)
T ss_dssp GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHH-H---TTCEEEEEEEEEETSCTTC
T ss_pred cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHh-h---hhhhhhhhhhcccccccch
Confidence 478999999976432 3344567799999999864 334444444443332 2 466766 789999875544
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.18 E-value=0.00018 Score=48.01 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+-.|++.|++|+|||++++.+..
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceeEEecCCCCCchHHHHHHHH
Confidence 345699999999999999999973
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.16 E-value=0.00024 Score=46.27 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.+++.|++|+||||++..+..
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 589999999999999999974
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.16 E-value=0.00031 Score=47.41 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=21.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.++++=|+|-|.+|||||||...+.
T Consensus 24 ~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 24 NKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEeECCCCCCHHHHHHHHH
Confidence 4457889999999999999988764
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.13 E-value=0.0002 Score=47.76 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
--|+|.|++|+|||||+.++.
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~ 50 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGI 50 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHH
Confidence 457799999999999999987
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.09 E-value=0.00038 Score=46.90 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=26.8
Q ss_pred HHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 5 DSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.+.+++.........-|+|.|.+|+|||||+..+.+.
T Consensus 30 ~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 30 DRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp HHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHh
Confidence 44555554433334456789999999999999998743
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00015 Score=46.96 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
=|+|.|++||||||+...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La 24 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMA 24 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46788999999999999986
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.05 E-value=0.00021 Score=47.20 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=25.3
Q ss_pred HHHHHHhhhhcc--ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 6 SILNWLRSLFFK--QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~--~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.+.+..+... ....+++.|++|+||||++..+..
T Consensus 18 ~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 18 ELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp HHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 344445444322 334689999999999999998874
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00012 Score=48.82 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.-.+++.|++|+|||++++.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA 66 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIA 66 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHH
Confidence 3459999999999999999997
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.99 E-value=0.00019 Score=49.17 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.|+++||+|||||.|++++..
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhh
Confidence 35589999999999999999973
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.0027 Score=41.50 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.+++.|++|+||||++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~ 55 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLA 55 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 48899999999999999875
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.89 E-value=0.00031 Score=45.02 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
-|+|-|..||||||+++.|.
T Consensus 2 lI~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999886
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=96.88 E-value=0.00034 Score=44.42 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=27.4
Q ss_pred hHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 3 FLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
++..+.+++... .+.--+++.|++++|||+|+..+.
T Consensus 39 Fl~~l~~~l~~~--PKkn~i~~~GP~~TGKS~f~~sl~ 74 (205)
T d1tuea_ 39 FLGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFI 74 (205)
T ss_dssp HHHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CCceEEEEECCCCccHHHHHHHHH
Confidence 455666666544 344678899999999999999886
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.86 E-value=0.00044 Score=46.27 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..--|++.|++|+|||+|++++.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala 62 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIA 62 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCcchhHHHHHH
Confidence 34569999999999999999997
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.82 E-value=0.00057 Score=43.78 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
+-|+|+|..||||||+++.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5589999999999999998863
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.00043 Score=44.52 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
+-|+|+|..||||||+++.|....
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~G 27 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADLG 27 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEEECCCcCCHHHHHHHHHHCC
Confidence 457899999999999999886433
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.78 E-value=0.00064 Score=48.25 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=28.1
Q ss_pred HHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 6 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.+.+.++...+.=-|+|.|++||||||++..++.
T Consensus 145 ~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~ 180 (401)
T d1p9ra_ 145 HNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQ 180 (401)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhceEEEEcCCCCCccHHHHHHhh
Confidence 334455555556667789999999999999999985
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.76 E-value=0.0002 Score=48.29 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=17.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.++.=|+|.|.+||||||+.++|.
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHH
Confidence 345569999999999999999875
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.028 Score=35.70 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhcc-c-eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 4 LDSILNWLRSLFFK-Q-EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~-~-~~~i~v~G~~~~GKstli~~~~~ 41 (184)
++...+.+...... + +-.+++.|++|+||||++..+..
T Consensus 7 ~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence 33444444443222 2 34599999999999999997763
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.73 E-value=0.00094 Score=44.55 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
+.+.|++|+|||++++.+..
T Consensus 49 l~l~GppGtGKT~l~~~l~~ 68 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVK 68 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHH
Confidence 34569999999999999973
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.67 E-value=0.00057 Score=49.09 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
-+|+++||+|||||-|++++.
T Consensus 50 sNILliGPTGvGKTlLAr~LA 70 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLA 70 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred ccEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999996
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.00062 Score=43.73 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
|+|-|..||||||+++.|.
T Consensus 5 IviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7788999999999999886
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.00071 Score=43.38 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
--+.|.|++|+|||+|+..+...
T Consensus 24 ~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 24 SITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHH
Confidence 34679999999999999998743
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.52 E-value=0.0015 Score=45.56 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.--+++.||||+|||+|+..+.
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~ 175 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALL 175 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred cCeEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999997
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.00038 Score=45.56 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|+|-|..||||||+++.|.
T Consensus 4 ~I~ieG~dGsGKST~~~~L~ 23 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILK 23 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTG
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999886
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=96.43 E-value=0.0012 Score=41.10 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
.-|++.|++|+||||+.-.+....
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHcC
Confidence 458999999999999999988443
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.41 E-value=0.00087 Score=43.78 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.--+.|.|++|+|||+|+..+...
T Consensus 34 G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 34 GSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 345679999999999999998743
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=96.38 E-value=0.0013 Score=40.89 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
.-|++.|++|+||||+.-.+....
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 458999999999999999998433
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.001 Score=42.74 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=16.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
|+|-|..||||||+++.+.
T Consensus 6 I~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6777999999999888775
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.34 E-value=0.001 Score=43.63 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
--++|.|++|+|||+|.-.+...
T Consensus 37 ~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 37 AITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 34679999999999999998743
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.29 E-value=0.00077 Score=45.79 Aligned_cols=20 Identities=20% Similarity=0.659 Sum_probs=17.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++ +++|+.||||||++.++.
T Consensus 26 ln-vlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 26 VT-AIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EE-EEECCTTTCSTHHHHHHH
T ss_pred eE-EEECCCCCcHHHHHHHHH
Confidence 44 477999999999999884
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.00016 Score=46.08 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=16.3
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 030000 23 SLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 23 ~v~G~~~~GKstli~~~~ 40 (184)
+|+|+.||||||++.++.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 477999999999999996
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=96.28 E-value=0.00061 Score=47.04 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
-.|++.|++|+|||+|++++.
T Consensus 29 h~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHH
Confidence 479999999999999999885
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.28 E-value=0.0016 Score=44.59 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
-.++++|++|+|||.|++.+.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la 73 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLS 73 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHH
Confidence 368999999999999999987
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.0012 Score=43.19 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
-|+|=|..||||||+++.|.
T Consensus 4 ~IviEG~~GsGKST~~~~L~ 23 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47899999999999999997
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.13 E-value=0.0016 Score=42.47 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.--++|.|++|+|||+|+.++...
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445678999999999999998743
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=96.10 E-value=0.0021 Score=39.72 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
..-|++.|++|+||||+.-.+....
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 3568999999999999998887544
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=96.10 E-value=0.0017 Score=42.47 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
-|++.|..||||||+.+.|.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999986
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.98 E-value=0.0019 Score=44.42 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.++|.|=|..||||||+++.+..
T Consensus 4 ~~lrI~IEG~iGsGKSTl~~~L~~ 27 (331)
T d1osna_ 4 GVLRIYLDGAYGIGKTTAAEEFLH 27 (331)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999973
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.97 E-value=0.0018 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=18.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.+++ |+|+.|||||+++.++.
T Consensus 25 ~~l~~-i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 25 SNFTS-IIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CSEEE-EECSTTSSHHHHHHHHH
T ss_pred CCEEE-EECCCCCCHHHHHHHHH
Confidence 34555 77999999999999984
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.96 E-value=0.0022 Score=41.25 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
+.+.|++|+|||.|++++.+
T Consensus 39 l~l~G~~G~GKTHLl~A~~~ 58 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGN 58 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999974
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0023 Score=41.87 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.--+.|.|++|+|||+|+.++..
T Consensus 37 G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 37 MAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34567999999999999999974
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=95.94 E-value=0.0024 Score=43.86 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.-.+|.|=|.-||||||+++.+.
T Consensus 3 ~~lrI~IEG~iGsGKTTl~~~La 25 (329)
T d1e2ka_ 3 TLLRVYIDGPHGMGKTTTTQLLV 25 (329)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHT
T ss_pred CceEEEEECCcCCCHHHHHHHHH
Confidence 45789999999999999999996
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=95.93 E-value=0.0027 Score=43.68 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...++|.|=|..|+||||+++.+..
T Consensus 4 ~~~~rI~iEG~iGsGKSTl~~~L~~ 28 (333)
T d1p6xa_ 4 VTIVRIYLDGVYGIGKSTTGRVMAS 28 (333)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHS
T ss_pred CceEEEEEECCccCCHHHHHHHHHH
Confidence 3568999999999999999999973
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.90 E-value=0.0023 Score=41.68 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-++|.|++|+|||+|+..+..
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 457899999999999999973
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.85 E-value=0.0025 Score=41.01 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
|++-|..||||||+++.|.
T Consensus 6 I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 6 ILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999998885
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.77 E-value=0.0031 Score=43.12 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
+++.|+||+|||.|++.+..
T Consensus 126 ~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 45579999999999999973
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.71 E-value=0.0028 Score=44.21 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..-+++++||+|||||-|.++|.
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA 89 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLA 89 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHH
Confidence 45679999999999999999986
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.65 E-value=0.0056 Score=35.32 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
++-|.|.+.|..|+||||+.+.|.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHH
Confidence 567999999999999999999985
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.52 E-value=0.004 Score=40.17 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=17.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.--+.|.|++|+|||+|+..+.
T Consensus 26 G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 26 GRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 3456788999999999987765
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.50 E-value=0.024 Score=36.37 Aligned_cols=78 Identities=18% Similarity=0.077 Sum_probs=42.4
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccc-cCHH
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEA-LSKQ 140 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~-~~~~ 140 (184)
.+.+.++|+|+.... .....+..+|.++++.+... .+........... +. .+.+ +-+++|+.+.... ...+
T Consensus 109 ~~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~~-~~~~~~~~~~~~~-~~---~~~~~~~iv~N~~~~~~~~~~~~ 181 (232)
T d1hyqa_ 109 STDILLLDAPAGLER--SAVIAIAAAQELLLVVNPEI-SSITDGLKTKIVA-ER---LGTKVLGVVVNRITTLGIEMAKN 181 (232)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHH-HH---HTCEEEEEEEEEECTTTHHHHHH
T ss_pred ccceeeecccccccc--hhHHHhhhhheeeeeccccc-cchhhhhhhhhhh-hh---cccccccccccccccccccchhh
Confidence 466889999886543 33344556999999988642 2333333322222 22 2344 3467899875332 2234
Q ss_pred HHHHHhC
Q 030000 141 ALVDQLG 147 (184)
Q Consensus 141 ~~~~~~~ 147 (184)
.+.+.++
T Consensus 182 ~i~~~~~ 188 (232)
T d1hyqa_ 182 EIEAILE 188 (232)
T ss_dssp HHHHHTT
T ss_pred hHHhhcC
Confidence 4444444
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=95.42 E-value=0.0035 Score=42.61 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.5
Q ss_pred EEEEEcCCCCCHHHHH
Q 030000 21 ELSLIGLQNAGKTSLV 36 (184)
Q Consensus 21 ~i~v~G~~~~GKstli 36 (184)
.++|.|.+||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3789999999999844
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=95.40 E-value=0.0031 Score=42.55 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=13.8
Q ss_pred EEEEcCCCCCHHHH-HHH
Q 030000 22 LSLIGLQNAGKTSL-VNT 38 (184)
Q Consensus 22 i~v~G~~~~GKstl-i~~ 38 (184)
++|.|.+||||||. +.+
T Consensus 17 ~lI~g~aGTGKTt~l~~r 34 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITNK 34 (306)
T ss_dssp EEECCCTTSCHHHHHHHH
T ss_pred EEEEeeCCccHHHHHHHH
Confidence 67899999999985 443
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.38 E-value=0.0049 Score=41.06 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
++|.|.+|+|||+|+..+.
T Consensus 38 ~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 38 IMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 5689999999999988876
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=95.32 E-value=0.011 Score=39.23 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.++--+.+.|++++|||+|++.+.
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~ 125 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIA 125 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHH
Confidence 345678899999999999999987
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=95.13 E-value=0.014 Score=38.22 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 4 LDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
++.+.+.+..+.. ...-|+|.|++|+||+.+.+.+.
T Consensus 9 ~~~~~~~~~~~a~-~~~pvlI~Ge~GtGK~~~A~~ih 44 (247)
T d1ny5a2 9 MKEILEKIKKISC-AECPVLITGESGVGKEVVARLIH 44 (247)
T ss_dssp HHHHHHHHHHHTT-CCSCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCEEEECCCCcCHHHHHHHHH
Confidence 3445555555433 33458899999999999999986
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.95 E-value=0.012 Score=40.12 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.++++|++|+|||.+.+.+.
T Consensus 55 ~~lf~Gp~G~GKt~lak~la 74 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLA 74 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHH
Confidence 57888999999999999886
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.0077 Score=39.92 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
.+|.|++|+|||+|+-.+.
T Consensus 32 ~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 32 GALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 5589999999999998775
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.0074 Score=42.85 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.++|+|.+|||||+++..++
T Consensus 52 H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHH
Confidence 48999999999999988776
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.0095 Score=39.95 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=22.5
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.-+-=|++|+|++|+|||+|+..+..
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 344566999999999999999988873
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.012 Score=40.88 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=15.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 030000 21 ELSLIGLQNAGKTSLVNTI 39 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~ 39 (184)
-.+|.|++|+||||++..+
T Consensus 165 ~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp EEEEECCTTSTHHHHHHHH
T ss_pred eEEEEcCCCCCceehHHHH
Confidence 3568899999999987553
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.39 E-value=0.0067 Score=40.36 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
+-+.|++++|||+|+-.+.
T Consensus 60 tei~G~~~sGKT~l~l~~~ 78 (268)
T d1xp8a1 60 TEIYGPESGGKTTLALAIV 78 (268)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEecCCccchHHHHHHHH
Confidence 4588999999999998887
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.28 E-value=0.011 Score=39.25 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=16.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
-+.+.|++++|||+|+-.+.
T Consensus 62 i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 62 VIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred eEEEecCCCcHHHHHHHHHH
Confidence 34688999999999987776
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=0.021 Score=37.08 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
++|.|+..+||||+++++.
T Consensus 44 ~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHHH
Confidence 5799999999999999986
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.70 E-value=0.022 Score=37.71 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
=+.+.|++|+|||||+-.+.
T Consensus 56 itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEecCCCcHHHHHHHHHH
Confidence 35689999999999998887
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.62 E-value=0.022 Score=36.70 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
+++.|+..+||||+++++.
T Consensus 38 ~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEESCSSSSHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhH
Confidence 6799999999999999886
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=93.59 E-value=0.018 Score=35.74 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030000 22 LSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~ 42 (184)
|+|+|...||||.+...+...
T Consensus 2 iLVtGGarSGKS~~AE~l~~~ 22 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCccHHHHHHHHHhc
Confidence 589999999999999999744
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=93.34 E-value=0.043 Score=36.25 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=17.5
Q ss_pred cceeEEE-EEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELS-LIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~-v~G~~~~GKstli~~~~ 40 (184)
++..+|+ +.|..|+||||+.-.|.
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nLA 41 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAIA 41 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4556664 55999999999765553
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.33 E-value=0.031 Score=37.16 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+-=|++++|.+|+|||+|+..+..
T Consensus 67 kGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 67 KGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEeeCCCCCCHHHHHHHHHH
Confidence 445899999999999999888863
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=93.06 E-value=0.033 Score=36.70 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=45.2
Q ss_pred CEEEEEEEcCCccch-hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcE-EEEEeCCCcccccC-H
Q 030000 63 NVTIKLWDLGGQRRF-RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPL-LVLGNKIDKSEALS-K 139 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~~~~~~-~ 139 (184)
.+.+.++|+|+.... ..........+|.++++.+.. ..++.........+.......+.++ -++.|+.+.....+ .
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~~~ 193 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELL 193 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHH
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCccchh
Confidence 477999999874432 222333345578888888763 3344444444333322222234443 36789988755322 2
Q ss_pred HHHHHHhCC
Q 030000 140 QALVDQLGL 148 (184)
Q Consensus 140 ~~~~~~~~~ 148 (184)
+++.+.++.
T Consensus 194 ~~~~~~~~~ 202 (269)
T d1cp2a_ 194 DAFAKELGS 202 (269)
T ss_dssp HHHHHHHTC
T ss_pred hhhHhhcCC
Confidence 334444443
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=92.30 E-value=0.036 Score=32.37 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=16.9
Q ss_pred eeEE-EEEcCCCCCHHHHHHHHh
Q 030000 19 EMEL-SLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i-~v~G~~~~GKstli~~~~ 40 (184)
.+++ ++.+++|+|||+++-.+.
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH
Confidence 3444 689999999999886655
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=92.23 E-value=0.058 Score=32.43 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=18.2
Q ss_pred cceeEEEEEcC-CCCCHHHHHHHHhcCC
Q 030000 17 KQEMELSLIGL-QNAGKTSLVNTIATGG 43 (184)
Q Consensus 17 ~~~~~i~v~G~-~~~GKstli~~~~~~~ 43 (184)
++++||+|+|. .++|-+ +...+..+.
T Consensus 2 ~~p~KV~IiGA~G~VG~~-~a~~l~~~~ 28 (154)
T d1y7ta1 2 KAPVRVAVTGAAGQIGYS-LLFRIAAGE 28 (154)
T ss_dssp CCCEEEEESSTTSHHHHH-HHHHHHTTT
T ss_pred CCCCEEEEECCCCHHHHH-HHHHHHhcc
Confidence 56789999996 788855 455555443
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.03 E-value=0.065 Score=33.70 Aligned_cols=24 Identities=4% Similarity=0.047 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
....+++.|++|+|||+++..+..
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999988763
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=91.16 E-value=0.1 Score=33.66 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=22.1
Q ss_pred HhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 11 LRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 11 ~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
............++.|.+|||||-..-+..
T Consensus 68 ~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~ 97 (233)
T d2eyqa3 68 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 97 (233)
T ss_dssp HHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred HHHHhccCccCeEEEcCCCCCcHHHHHHHH
Confidence 333455566788999999999998665554
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=90.84 E-value=0.051 Score=36.64 Aligned_cols=14 Identities=43% Similarity=0.729 Sum_probs=12.5
Q ss_pred EEEcCCCCCHHHHH
Q 030000 23 SLIGLQNAGKTSLV 36 (184)
Q Consensus 23 ~v~G~~~~GKstli 36 (184)
++.|.+|+|||||-
T Consensus 18 lfFGLSGTGKTTLs 31 (313)
T d2olra1 18 VFFGLSGTGKTTLS 31 (313)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEEccCCCCcccce
Confidence 58999999999965
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.69 E-value=0.071 Score=35.16 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=22.6
Q ss_pred HHHhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+............-++.|..|||||-..-...
T Consensus 94 ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~ 125 (264)
T d1gm5a3 94 EIRNDMISEKPMNRLLQGDVGSGKTVVAQLAI 125 (264)
T ss_dssp HHHHHHHSSSCCCCEEECCSSSSHHHHHHHHH
T ss_pred HHHHHhhccCcceeeeeccccccccHHHHHHH
Confidence 33444455567788899999999998655443
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=90.66 E-value=0.055 Score=36.59 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=12.8
Q ss_pred EEEEcCCCCCHHHHH
Q 030000 22 LSLIGLQNAGKTSLV 36 (184)
Q Consensus 22 i~v~G~~~~GKstli 36 (184)
-++.|.+|+|||||-
T Consensus 17 alffGLSGTGKTTLs 31 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEEECTTSCHHHHT
T ss_pred EEEEccCCCCccccc
Confidence 368999999999954
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.56 E-value=0.06 Score=35.95 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
-+-=|++++|.+|+|||+|+..+.
T Consensus 66 g~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 66 GRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cCCCEEEeecCCCCChHHHHHHHH
Confidence 345588999999999999987765
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=90.34 E-value=0.099 Score=34.74 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=42.1
Q ss_pred CEEEEEEEcCCccchhHh-HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCcccccC-H
Q 030000 63 NVTIKLWDLGGQRRFRTM-WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALS-K 139 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~-~ 139 (184)
.+.+.++|+|+....... .......++.++++.... ..++.........+.......+.++. ++.|+.+...... .
T Consensus 118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~~~~ 196 (289)
T d2afhe1 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELI 196 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHH
T ss_pred cCCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhhHHHH
Confidence 477889999875432221 222233567777666543 33343344443333222222445543 6789987543221 3
Q ss_pred HHHHHHhCC
Q 030000 140 QALVDQLGL 148 (184)
Q Consensus 140 ~~~~~~~~~ 148 (184)
+++.+.++.
T Consensus 197 ~~~~~~~g~ 205 (289)
T d2afhe1 197 IALANKLGT 205 (289)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHcCC
Confidence 444454443
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=90.11 E-value=0.066 Score=36.26 Aligned_cols=14 Identities=43% Similarity=0.729 Sum_probs=12.7
Q ss_pred EEEcCCCCCHHHHH
Q 030000 23 SLIGLQNAGKTSLV 36 (184)
Q Consensus 23 ~v~G~~~~GKstli 36 (184)
++.|.+|+|||||-
T Consensus 18 lfFGLSGTGKTTLs 31 (323)
T d1ii2a1 18 VFFGLSGTGKTTLS 31 (323)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEEccCCCCcccce
Confidence 59999999999976
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=90.02 E-value=0.11 Score=32.62 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=16.7
Q ss_pred EEEEEcCC-CCCHHHHHHHHh
Q 030000 21 ELSLIGLQ-NAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~-~~GKstli~~~~ 40 (184)
|+.|.|-. |+||||+.-.|.
T Consensus 3 ~~~i~gt~~GVGKTtvs~~La 23 (224)
T d1byia_ 3 RYFVTGTDTEVGKTVASCALL 23 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCccHHHHHHHHH
Confidence 67899996 999999877665
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=89.97 E-value=0.099 Score=34.64 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=15.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
-|.+.|..|+||||+.-.+.
T Consensus 10 ~i~~sGKGGVGKTTvaa~lA 29 (296)
T d1ihua1 10 YLFFTGKGGVGKTSISCATA 29 (296)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCcChHHHHHHHHH
Confidence 35689999999999666654
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=88.52 E-value=0.078 Score=35.19 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=19.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+-=|++++|.+|+|||+|+..+.
T Consensus 66 ~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 66 RGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHH
T ss_pred CCceEeeccCCCCChHHHHHHHH
Confidence 34578999999999999987654
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=88.40 E-value=0.16 Score=30.00 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=14.6
Q ss_pred eeEEEEEcCCCCCHHH-HHHHH
Q 030000 19 EMELSLIGLQNAGKTS-LVNTI 39 (184)
Q Consensus 19 ~~~i~v~G~~~~GKst-li~~~ 39 (184)
.+.+ ++|+=.||||| |++++
T Consensus 8 ~l~l-I~GpMfSGKTteLi~~~ 28 (141)
T d1xx6a1 8 WVEV-IVGPMYSGKSEELIRRI 28 (141)
T ss_dssp EEEE-EECSTTSSHHHHHHHHH
T ss_pred eEEE-EEeccccHHHHHHHHHH
Confidence 3444 68999999999 44444
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=88.35 E-value=0.16 Score=29.84 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=14.5
Q ss_pred EEEcCCCCCHHH-HHHHHh
Q 030000 23 SLIGLQNAGKTS-LVNTIA 40 (184)
Q Consensus 23 ~v~G~~~~GKst-li~~~~ 40 (184)
+++|+=.||||| |++++-
T Consensus 6 ~i~GpMfsGKTteLi~~~~ 24 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRLH 24 (139)
T ss_dssp EEECSTTSCHHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHHH
Confidence 468999999999 666654
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=88.10 E-value=0.29 Score=36.79 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
=-|++.|.+|||||.-.+.++
T Consensus 87 QsIiisGeSGsGKTe~~k~il 107 (684)
T d1lkxa_ 87 QCVIISGESGAGKTEASKKIM 107 (684)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 359999999999999777665
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=86.98 E-value=0.1 Score=30.12 Aligned_cols=19 Identities=37% Similarity=0.202 Sum_probs=14.4
Q ss_pred cceeEEEEEcCCCCCHHHH
Q 030000 17 KQEMELSLIGLQNAGKTSL 35 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstl 35 (184)
++.-.+++.+++|+|||..
T Consensus 5 ~~~~~~il~~~tGsGKT~~ 23 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRR 23 (140)
T ss_dssp STTCEEEECCCTTSSTTTT
T ss_pred HcCCcEEEEcCCCCChhHH
Confidence 3445677889999999943
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=86.04 E-value=0.46 Score=35.86 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
=-|++.|.+|||||.-.+.++
T Consensus 92 Q~IiisGeSGaGKTe~~k~il 112 (710)
T d1br2a2 92 QSILCTGESGAGKTENTKKVI 112 (710)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 359999999999999877775
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=85.97 E-value=0.25 Score=30.54 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=12.6
Q ss_pred EEEEEcCCCCCHHHH
Q 030000 21 ELSLIGLQNAGKTSL 35 (184)
Q Consensus 21 ~i~v~G~~~~GKstl 35 (184)
++++.+++|+|||..
T Consensus 25 n~lv~~pTGsGKT~i 39 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLI 39 (200)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred CeEEEeCCCCcHHHH
Confidence 467889999999964
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=85.82 E-value=0.59 Score=28.50 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=18.2
Q ss_pred ccceeEEEEEcC-CCCCHHHHHHHHhcCC
Q 030000 16 FKQEMELSLIGL-QNAGKTSLVNTIATGG 43 (184)
Q Consensus 16 ~~~~~~i~v~G~-~~~GKstli~~~~~~~ 43 (184)
.++.+||+|+|. .+.|-| |+..+..+.
T Consensus 21 ~k~~~kV~I~GA~G~Ig~~-l~~~La~g~ 48 (175)
T d7mdha1 21 WKKLVNIAVSGAAGMISNH-LLFKLASGE 48 (175)
T ss_dssp CCCCEEEEEETTTSHHHHH-HHHHHHHTT
T ss_pred cCCCcEEEEECCCcHHHHH-HHHHHHcCc
Confidence 357899999996 667755 444555443
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=85.54 E-value=0.51 Score=36.12 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=17.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
=.|++.|.+|||||.-.+.++
T Consensus 124 QsIiisGeSGaGKTe~~K~il 144 (794)
T d2mysa2 124 QSILITGESGAGKTVNTKRVI 144 (794)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 358999999999997666554
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.70 E-value=0.29 Score=29.17 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=16.3
Q ss_pred cceeEEEEEcC-CCCCHHHHHH
Q 030000 17 KQEMELSLIGL-QNAGKTSLVN 37 (184)
Q Consensus 17 ~~~~~i~v~G~-~~~GKstli~ 37 (184)
++++||+|+|. .++|.+....
T Consensus 1 s~p~KV~IiGA~G~VG~~la~~ 22 (154)
T d5mdha1 1 SEPIRVLVTGAAGQIAYSLLYS 22 (154)
T ss_dssp CCCEEEEESSTTSHHHHTTHHH
T ss_pred CCceEEEEECCCCHHHHHHHHH
Confidence 35789999995 8888876554
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=83.48 E-value=0.7 Score=34.97 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
=.|++.|++|||||.-.+.++
T Consensus 95 Q~IiisGeSGsGKTe~~k~il 115 (730)
T d1w7ja2 95 QSIIVSGESGAGKTVSAKYAM 115 (730)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999777665
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.29 E-value=0.1 Score=32.61 Aligned_cols=17 Identities=41% Similarity=0.299 Sum_probs=14.4
Q ss_pred eEEEEEcCCCCCHHHHH
Q 030000 20 MELSLIGLQNAGKTSLV 36 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli 36 (184)
-++++.+++|+|||+..
T Consensus 41 ~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 41 KNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp SCEEEECSSHHHHHHHH
T ss_pred CCEEEEcCCCCchhHHH
Confidence 46889999999999753
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.63 E-value=0.66 Score=31.25 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=22.5
Q ss_pred HHHHhhhhccceeEEEEEcCCCCCHHHHH
Q 030000 8 LNWLRSLFFKQEMELSLIGLQNAGKTSLV 36 (184)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKstli 36 (184)
...+.++.......|...|..|||||..+
T Consensus 65 ~~lv~~~l~G~n~~i~aYGqtgSGKTyT~ 93 (323)
T d1bg2a_ 65 KKIVKDVLEGYNGTIFAYGQTSSGKTHTM 93 (323)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHcCCCcceeeecccCCCCceec
Confidence 34455556666789999999999999865
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.20 E-value=3.5 Score=23.97 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=17.2
Q ss_pred EEEEEcC-CCCCHHHHHHHHhcCCC
Q 030000 21 ELSLIGL-QNAGKTSLVNTIATGGY 44 (184)
Q Consensus 21 ~i~v~G~-~~~GKstli~~~~~~~~ 44 (184)
||+|+|. ..+| +++...+.....
T Consensus 2 Kv~IiGA~G~VG-~~~A~~l~~~~~ 25 (144)
T d1mlda1 2 KVAVLGASGGIG-QPLSLLLKNSPL 25 (144)
T ss_dssp EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred eEEEECCCChHH-HHHHHHHHhCCc
Confidence 8999995 8999 666777765544
|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]
Probab=80.06 E-value=1.5 Score=29.75 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=22.9
Q ss_pred HHHHHhhhhccceeEEEEEcCCCCCHHHHH
Q 030000 7 ILNWLRSLFFKQEMELSLIGLQNAGKTSLV 36 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKstli 36 (184)
+...+.+........|...|..|||||..+
T Consensus 71 v~~~v~~~l~G~n~~i~aYGqtgSGKT~T~ 100 (342)
T d1f9va_ 71 VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 100 (342)
T ss_dssp HHHHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred hhhhhcchhcccccceeeeeccCCcccccc
Confidence 444566666666788999999999999755
|