Citrus Sinensis ID: 030013

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
MAILAPASVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKITPVAG
cccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEcccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHcccccccc
cccccccccccccccccHHHHccccccccccccccccEEccccEcccHHHHHHcccccHHHHHccHcHHHHHccccHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccEEEEEEccccccHHHHcccccccEEEEEEHHHccccccccccHHHHHHHHHHHHHccHHEcc
mailapasvskdplpssssaltplrsstqifgpkfkfrqigqtqlslstsfkkssgfklkgwrhsegitqefqvdKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQnladgqapkFMVIAcadsrvcpsnilgfqpgeafIVRNvanmvppcesgpsetNAALEFAVNSvkitpvag
mailapasvskdplpssssaltplrSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNsvkitpvag
MAILAPasvskdplpssssaltplrssTQIFGPKFKFRQIGQTQlslstsfkkssgfklkgWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKITPVAG
*****************************IFGPKFKFRQIGQT************GFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVP***************************
*****************************************************************************************FDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKITPVAG
********************LTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKITPVAG
**********************PLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVD********ENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKITPVAG
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAILAPASVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKITPVAG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query184 2.2.26 [Sep-21-2011]
P46510 330 Carbonic anhydrase OS=Fla N/A no 0.652 0.363 0.471 3e-23
P17067 328 Carbonic anhydrase, chlor N/A no 0.5 0.280 0.537 3e-23
P46511 330 Carbonic anhydrase OS=Fla N/A no 0.581 0.324 0.5 4e-23
P46512 330 Carbonic anhydrase 1 OS=F N/A no 0.581 0.324 0.5 4e-23
P46281 329 Carbonic anhydrase OS=Fla N/A no 0.581 0.325 0.5 6e-23
P27140 347 Carbonic anhydrase, chlor no no 0.5 0.265 0.516 9e-22
P27141 321 Carbonic anhydrase, chlor N/A no 0.5 0.286 0.526 1e-21
P42737 259 Carbonic anhydrase 2, chl no no 0.516 0.366 0.489 2e-21
P16016 319 Carbonic anhydrase, chlor N/A no 0.478 0.275 0.539 2e-21
P40880 324 Carbonic anhydrase, chlor N/A no 0.483 0.274 0.466 2e-18
>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2 Back     alignment and function desciption
 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 78/121 (64%), Gaps = 1/121 (0%)

Query: 60  KGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQ 119
           KG       T+  Q+     A + +   D  +++K  F+ FK +KF+ N   Y  LA GQ
Sbjct: 93  KGELEPVAATRIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPALYDELAKGQ 152

Query: 120 APKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCE-SGPSETNAALEFAVNSVK 178
           +PKFMV AC+DSRVCPS++L FQPGEAF+VRNVANMVPP + +  S   AA+E+AV  +K
Sbjct: 153 SPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPFDKTKYSGVGAAVEYAVLHLK 212

Query: 179 I 179
           +
Sbjct: 213 V 213
Reversible hydration of carbon dioxide.
Flaveria bidentis (taxid: 4224)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1 Back     alignment and function description
>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1 Back     alignment and function description
>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1 Back     alignment and function description
>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2 Back     alignment and function description
>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P42737|CAH2_ARATH Carbonic anhydrase 2, chloroplastic OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2 Back     alignment and function description
>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2 Back     alignment and function description
>sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query184
359475658 300 PREDICTED: carbonic anhydrase 2, chlorop 0.858 0.526 0.6 2e-48
296087414 301 unnamed protein product [Vitis vinifera] 0.864 0.528 0.6 3e-48
356554783 301 PREDICTED: carbonic anhydrase, chloropla 0.951 0.581 0.530 1e-47
356549520 301 PREDICTED: carbonic anhydrase, chloropla 0.951 0.581 0.530 3e-47
255563296 313 carbonic anhydrase, putative [Ricinus co 0.972 0.571 0.547 3e-47
255645634 301 unknown [Glycine max] 0.951 0.581 0.524 4e-47
388516167 308 unknown [Lotus japonicus] 0.972 0.581 0.505 5e-46
388502556 308 unknown [Lotus japonicus] 0.972 0.581 0.5 2e-45
224140715256 predicted protein [Populus trichocarpa] 0.711 0.511 0.648 4e-44
297802642 301 carbonic anhydrase family protein [Arabi 0.896 0.548 0.528 2e-42
>gi|359475658|ref|XP_002263870.2| PREDICTED: carbonic anhydrase 2, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 121/160 (75%), Gaps = 2/160 (1%)

Query: 23  PLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAE 82
           P  + + IFG K K   I QT ++   S  +S   +LK  R S G+TQE   D+LE+ AE
Sbjct: 23  PSTTRSTIFGSKPKLSVIEQTHVTNLASLNQS--LRLKASRESPGLTQELTSDRLESIAE 80

Query: 83  VENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQ 142
           +EN  D FD++KHRFLSFKK K++ENLE +QNLA  QAPKFMVIACADSRVCPS ILGF+
Sbjct: 81  IENRYDVFDEVKHRFLSFKKHKYLENLECFQNLATAQAPKFMVIACADSRVCPSKILGFE 140

Query: 143 PGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKITPV 182
           PGEAF+VRNVAN+VP  E+GP+ETNAALEFAVN++++  +
Sbjct: 141 PGEAFMVRNVANLVPLYENGPTETNAALEFAVNTLEVENI 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296087414|emb|CBI34003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356554783|ref|XP_003545722.1| PREDICTED: carbonic anhydrase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356549520|ref|XP_003543141.1| PREDICTED: carbonic anhydrase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|255563296|ref|XP_002522651.1| carbonic anhydrase, putative [Ricinus communis] gi|223538127|gb|EEF39738.1| carbonic anhydrase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255645634|gb|ACU23311.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388516167|gb|AFK46145.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388502556|gb|AFK39344.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224140715|ref|XP_002323724.1| predicted protein [Populus trichocarpa] gi|222866726|gb|EEF03857.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297802642|ref|XP_002869205.1| carbonic anhydrase family protein [Arabidopsis lyrata subsp. lyrata] gi|297315041|gb|EFH45464.1| carbonic anhydrase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query184
TAIR|locus:2134218 302 BCA5 "beta carbonic anhydrase 0.592 0.360 0.622 4.6e-34
TAIR|locus:2196292 290 BCA6 "beta carbonic anhydrase 0.592 0.375 0.557 5.4e-31
TAIR|locus:2084198 347 CA1 "carbonic anhydrase 1" [Ar 0.559 0.296 0.476 1.1e-21
TAIR|locus:2185460 331 CA2 "carbonic anhydrase 2" [Ar 0.565 0.314 0.462 1.1e-21
TAIR|locus:2016109 280 BCA4 "beta carbonic anhydrase 0.5 0.328 0.516 2.4e-21
TAIR|locus:2034797 258 BCA3 "beta carbonic anhydrase 0.554 0.395 0.485 5.7e-20
TIGR_CMR|CBU_0139 206 CBU_0139 "carbonic anhydrase" 0.461 0.412 0.465 1.4e-14
TIGR_CMR|GSU_2307 211 GSU_2307 "carbonic anhydrase" 0.423 0.369 0.462 3.4e-13
TIGR_CMR|CJE_0288 211 CJE_0288 "carbonic anhydrase" 0.445 0.388 0.404 5.6e-13
TIGR_CMR|SPO_3715 216 SPO_3715 "carbonic anhydrase, 0.456 0.388 0.459 7.1e-13
TAIR|locus:2134218 BCA5 "beta carbonic anhydrase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 71/114 (62%), Positives = 90/114 (78%)

Query:    67 GITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFM-ENLEHYQNLADGQAPKFMV 125
             G+TQE        A + +N  D FD MK RFL+FKK K++ ++ EHY+NLAD QAPKF+V
Sbjct:    63 GLTQEAN----GVAIDRQNNTDVFDDMKQRFLAFKKLKYIRDDFEHYKNLADAQAPKFLV 118

Query:   126 IACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKI 179
             IACADSRVCPS +LGFQPG+AF VRN+AN+VPP ESGP+ET AALEF+VN++ +
Sbjct:   119 IACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNV 172
GO:0004089 "carbonate dehydratase activity" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015976 "carbon utilization" evidence=IEA;ISS
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
TAIR|locus:2196292 BCA6 "beta carbonic anhydrase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084198 CA1 "carbonic anhydrase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185460 CA2 "carbonic anhydrase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016109 BCA4 "beta carbonic anhydrase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034797 BCA3 "beta carbonic anhydrase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0139 CBU_0139 "carbonic anhydrase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2307 GSU_2307 "carbonic anhydrase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0288 CJE_0288 "carbonic anhydrase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3715 SPO_3715 "carbonic anhydrase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.1LOW CONFIDENCE prediction!
4th Layer4.2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00007538001
RecName- Full=Carbonic anhydrase; EC=4.2.1.1; (262 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00020318001
SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (164 aa)
•    •• 0.939
GSVIVG00003051001
RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (814 aa)
      • 0.565
GSVIVG00030064001
RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (778 aa)
      • 0.560
GSVIVG00024166001
RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (842 aa)
      • 0.559
GSVIVG00021049001
RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (760 aa)
      • 0.559
GSVIVG00035063001
SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (127 aa)
      • 0.481
PsbP2
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)
      • 0.480

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query184
PLN03006 301 PLN03006, PLN03006, carbonate dehydratase 3e-53
cd00884190 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) 7e-44
PLN02154 290 PLN02154, PLN02154, carbonic anhydrase 2e-39
PLN00416 258 PLN00416, PLN00416, carbonate dehydratase 8e-30
PLN03019 330 PLN03019, PLN03019, carbonic anhydrase 2e-25
smart00947154 smart00947, Pro_CA, Carbonic anhydrase 4e-25
PLN03014 347 PLN03014, PLN03014, carbonic anhydrase 1e-24
cd00382119 cd00382, beta_CA, Carbonic anhydrases (CA) are zin 2e-24
COG0288 207 COG0288, CynT, Carbonic anhydrase [Inorganic ion t 3e-23
cd00883182 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) 1e-20
pfam00484149 pfam00484, Pro_CA, Carbonic anhydrase 1e-19
cd03378154 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) 9e-12
PRK10437 220 PRK10437, PRK10437, carbonic anhydrase; Provisiona 2e-10
cd03379142 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) 4e-04
>gnl|CDD|178583 PLN03006, PLN03006, carbonate dehydratase Back     alignment and domain information 
 Score =  171 bits (434), Expect = 3e-53
 Identities = 91/173 (52%), Positives = 121/173 (69%), Gaps = 11/173 (6%)

Query: 8   SVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFK-KSSGFKLKGWRHSE 66
           SVS DP   SS++L  L++   IFGP    +    TQL +  SF+ K++  ++     + 
Sbjct: 9   SVSHDPF--SSTSLLNLQTQA-IFGPNHSLKT---TQLRIPASFRRKATNLQVMASGKTP 62

Query: 67  GITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVI 126
           G+TQE        A + +N  D FD MK RFL+FKK K+M++ EHY+NLAD QAPKF+VI
Sbjct: 63  GLTQEAN----GVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVI 118

Query: 127 ACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKI 179
           ACADSRVCPS +LGFQPG+AF VRN+AN+VPP ESGP+ET AALEF+VN++ +
Sbjct: 119 ACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNV 171

Length = 301
>gnl|CDD|238449 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|215111 PLN02154, PLN02154, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|177809 PLN00416, PLN00416, carbonate dehydratase Back     alignment and domain information
>gnl|CDD|166660 PLN03019, PLN03019, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|214929 smart00947, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|238224 cd00382, beta_CA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|223365 COG0288, CynT, Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238448 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|215941 pfam00484, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|239473 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|182460 PRK10437, PRK10437, carbonic anhydrase; Provisional Back     alignment and domain information
>gnl|CDD|239474 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 184
PLN03006 301 carbonate dehydratase 100.0
PLN03014 347 carbonic anhydrase 100.0
PLN03019 330 carbonic anhydrase 100.0
PLN00416 258 carbonate dehydratase 100.0
COG0288 207 CynT Carbonic anhydrase [Inorganic ion transport a 99.97
PLN02154 290 carbonic anhydrase 99.97
PRK15219245 carbonic anhydrase; Provisional 99.96
cd00883182 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-c 99.96
PRK10437 220 carbonic anhydrase; Provisional 99.96
cd00884190 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-c 99.96
cd03378154 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-c 99.95
KOG1578 276 consensus Predicted carbonic anhydrase involved in 99.92
cd00382119 beta_CA Carbonic anhydrases (CA) are zinc-containi 99.88
PF00484153 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Ca 99.84
cd03379142 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-c 99.83
KOG1578 276 consensus Predicted carbonic anhydrase involved in 96.14
>PLN03006 carbonate dehydratase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-46  Score=331.15  Aligned_cols=174  Identities=49%  Similarity=0.796  Sum_probs=152.4

Q ss_pred             CCcCCCCccccCCCCCCCCCCCCCCCccceeCCCccccccchhhhhhhhhhhhc-cCccccccccchhhhHHhhcccccc
Q 030013            1 MAILAPASVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKS-SGFKLKGWRHSEGITQEFQVDKLET   79 (184)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~~-~~~~~~a~~~~~~~t~el~~~~~~~   79 (184)
                      +|+|+++|||+|||+|+|+.  +.+.....+|..+    ...|+++|...+|++ .+|+.+|++|++++|+||+....+ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-   74 (301)
T PLN03006          2 AATPTHFSVSHDPFSSTSLL--NLQTQAIFGPNHS----LKTTQLRIPASFRRKATNLQVMASGKTPGLTQEANGVAID-   74 (301)
T ss_pred             CCCCCCcccccCCcchhhhh--ccCcceeecCCcc----cceeEecccccccccccchhhhhhhchHHHHHHHhhccCC-
Confidence            47899999999999999996  2233344445544    667889999988775 589999999999999999865322 


Q ss_pred             ccccCCHHHHHHHHHHHHHHhhhhhcccChHHHHhhhcCCCCcEEEEeecCCCCCcccccCCCCCceEEEeecCCCCCCC
Q 030013           80 AAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPC  159 (184)
Q Consensus        80 ~~~~~~~~~~l~~Ll~GN~rF~~~~~~~~~~~~~~La~gQ~P~~lvItCsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~  159 (184)
                         ..++.+.+++|++||.+|+..++.+++++|++|++||+|+++||+||||||+|+.|||++|||+||+||+||+|+|+
T Consensus        75 ---~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~  151 (301)
T PLN03006         75 ---RQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPY  151 (301)
T ss_pred             ---CCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCc
Confidence               23478999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcchhHHHHHHHHhcCCCcccC
Q 030013          160 ESGPSETNAALEFAVNSVKITPVAG  184 (184)
Q Consensus       160 d~~~~sv~aSLEYAV~~LgV~~IV~  184 (184)
                      |.+..++.++|||||.+|||++|||
T Consensus       152 d~~~~~~~aSLEYAV~~L~V~~IVV  176 (301)
T PLN03006        152 ESGPTETKAALEFSVNTLNVENILV  176 (301)
T ss_pred             cccccchhhhHHHHHHHhCCCEEEE
Confidence            8655679999999999999999986

>PLN03014 carbonic anhydrase Back     alignment and domain information
>PLN03019 carbonic anhydrase Back     alignment and domain information
>PLN00416 carbonate dehydratase Back     alignment and domain information
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02154 carbonic anhydrase Back     alignment and domain information
>PRK15219 carbonic anhydrase; Provisional Back     alignment and domain information
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PRK10437 carbonic anhydrase; Provisional Back     alignment and domain information
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4 Back     alignment and domain information
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query184
1ekj_A 221 The X-Ray Crystallographic Structure Of Beta Carbon 9e-24
3e3g_A 229 H. Influenzae Beta-Carbonic Anhydrase, Variant G41a 1e-09
3e28_A 229 H. Influenzae Beta-carbonic Anhydrase, Variant Y181 3e-09
3e24_A 229 H. Influenzae Beta-Carbonic Anhydrase, Variant W39f 3e-09
2a8c_A 229 Haemophilus Influenzae Beta-Carbonic Anhydrase Leng 3e-09
3mf3_A 221 Cobalt(Ii)-Substituted Haemophilus Influenzae B-Car 3e-09
3ucj_A 227 Coccomyxa Beta-Carbonic Anhydrase In Complex With A 8e-09
3e2x_A 229 H. Influenzae Beta-Carbonic Anhydrase, Variant V47a 1e-08
3e1v_A 229 H. Influenzae Beta-Carbonic Anhydrase, Variant D44n 1e-08
1i6o_A 220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 3e-08
1ddz_A 496 X-Ray Structure Of A Beta-Carbonic Anhydrase From T 3e-08
1i6p_A 220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 3e-08
3qy1_A 223 1.54a Resolution Crystal Structure Of A Beta-Carbon 4e-08
2w3n_A 239 Structure And Inhibition Of The Co2-Sensing Carboni 4e-08
2w3q_A 243 Structure And Inhibition Of The Co2-Sensing Carboni 4e-08
3eyx_A 216 Crystal Structure Of Carbonic Anhydrase Nce103 From 1e-07
1ym3_A 215 Crystal Structure Of Carbonic Anhydrase Rv3588c Fro 1e-05
2a5v_A 213 Crystal Structure Of M. Tuberculosis Beta Carbonic 1e-05
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic Anhydrase From The C3 Dicot Pisum Sativum Length = 221 Back     alignment and structure 
Iteration: 1

 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 70/93 (75%), Gaps = 1/93 (1%)
Query: 91  DKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVR 150
           +++K  FL FKK+K+ +N   Y  LA GQ+P FMV AC+DSRVCPS++L FQPGEAF+VR
Sbjct: 15  ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVR 74
Query: 151 NVANMVPPCESGP-SETNAALEFAVNSVKITPV 182
           NVAN+VPP +    + T AA+E+AV  +K++ +
Sbjct: 75  NVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNI 107
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a Length = 229 Back     alignment and structure
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f Length = 229 Back     alignment and structure
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f Length = 229 Back     alignment and structure
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Length = 229 Back     alignment and structure
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic Anhydrase Length = 221 Back     alignment and structure
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Acetazolamide Length = 227 Back     alignment and structure
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a Length = 229 Back     alignment and structure
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n Length = 229 Back     alignment and structure
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red Alga, Porphyridium Purpureum R-1 Length = 496 Back     alignment and structure
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic Anhydrase From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 Length = 223 Back     alignment and structure
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 239 Back     alignment and structure
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 243 Back     alignment and structure
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From Saccharomyces Cerevisiae Length = 216 Back     alignment and structure
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From Mycobacterium Tuberculosis Length = 215 Back     alignment and structure
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic Anhydrase, Rv3588c, Tetrameric Form Length = 213 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query184
1ekj_A 221 Beta-carbonic anhydrase; rossman fold domain, stra 1e-41
3qy1_A 223 Carbonic anhydrase; structural genomics, center fo 7e-36
3e3i_A 229 Carbonic anhydrase 2, beta carbonic anhydrase; all 1e-35
3ucj_A 227 Carbonic anhydrase; alpha/beta, strand exchange, l 1e-34
2w3q_A 243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 2e-34
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 3e-34
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 3e-33
3eyx_A 216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 1e-31
1ym3_A 215 Carbonic anhydrase (carbonate dehydratase) (carbo 5e-28
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 6e-17
3teo_A 204 Carbon disulfide hydrolase; beta carbonic anhydras 1e-16
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 2e-15
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 3e-15
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Length = 221 Back     alignment and structure
 Score =  138 bits (349), Expect = 1e-41
 Identities = 50/102 (49%), Positives = 75/102 (73%), Gaps = 1/102 (0%)

Query: 79  TAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNI 138
           ++++   + +  +++K  FL FKK+K+ +N   Y  LA GQ+P FMV AC+DSRVCPS++
Sbjct: 3   SSSDGIPKSEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHV 62

Query: 139 LGFQPGEAFIVRNVANMVPPCE-SGPSETNAALEFAVNSVKI 179
           L FQPGEAF+VRNVAN+VPP + +  + T AA+E+AV  +K+
Sbjct: 63  LDFQPGEAFVVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKV 104
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Length = 223 Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Length = 229 Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Length = 227 Back     alignment and structure
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Length = 243 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Length = 216 Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Length = 215 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Length = 170 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Length = 204 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Length = 172 Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} Length = 166 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query184
1ekj_A 221 Beta-carbonic anhydrase; rossman fold domain, stra 100.0
2w3q_A 243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 99.97
1ym3_A 215 Carbonic anhydrase (carbonate dehydratase) (carbo 99.97
3qy1_A 223 Carbonic anhydrase; structural genomics, center fo 99.97
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 99.97
3ucj_A 227 Carbonic anhydrase; alpha/beta, strand exchange, l 99.96
3e3i_A 229 Carbonic anhydrase 2, beta carbonic anhydrase; all 99.96
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 99.96
3eyx_A 216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 99.96
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 99.96
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 99.94
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 99.93
3teo_A 204 Carbon disulfide hydrolase; beta carbonic anhydras 99.9
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Back     alignment and structure
Probab=100.00  E-value=3.8e-34  Score=240.05  Aligned_cols=101  Identities=50%  Similarity=0.859  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHHHHHhhhhhcccChHHHHhhhcCCCCcEEEEeecCCCCCcccccCCCCCceEEEeecCCCCCCCCCCC
Q 030013           84 ENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP  163 (184)
Q Consensus        84 ~~~~~~l~~Ll~GN~rF~~~~~~~~~~~~~~La~gQ~P~~lvItCsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~  163 (184)
                      .+|++++++|++||++|+++++.+++++|++|+++|+|+++||+||||||+|+.|||++|||+||+||+||+|+++|.+.
T Consensus         8 ~~p~~~l~~L~~gN~~f~~~~~~~~~~~~~~La~gQ~P~~lvi~CsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~d~~~   87 (221)
T 1ekj_A            8 IPKSEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAK   87 (221)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCTTT
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcccCHHHHHhhccCCCCcEEEEEeCCCCCCHHHHhCCCCCcEEEEeccCcccCcccccc
Confidence            46788999999999999999888899999999999999999999999999999999999999999999999999987543


Q ss_pred             -cchhHHHHHHHHhcCCCcccC
Q 030013          164 -SETNAALEFAVNSVKITPVAG  184 (184)
Q Consensus       164 -~sv~aSLEYAV~~LgV~~IV~  184 (184)
                       +++.+||||||.+|||++|||
T Consensus        88 ~~~~~asleyAv~~L~v~~IvV  109 (221)
T 1ekj_A           88 YAGTGAAIEYAVLHLKVSNIVV  109 (221)
T ss_dssp             CHHHHHHHHHHHHTSCCSEEEE
T ss_pred             cchhHHHHHHHHHhcCCCEEEE
Confidence             357899999999999999986
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Back     alignment and structure
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} SCOP: c.53.2.1 PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} SCOP: c.53.2.0 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 184
d1ekja_ 210 c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum 6e-30
d1i6pa_ 214 c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia 1e-25
d1ddza2 239 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red 3e-25
d1ddza1 242 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red a 2e-23
d1g5ca_169 c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Me 2e-14
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Length = 210 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Pea (Pisum sativum) [TaxId: 3888]

 Score =  107 bits (267), Expect = 6e-30
 Identities = 50/91 (54%), Positives = 67/91 (73%), Gaps = 1/91 (1%)

Query: 90  FDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIV 149
            +++K  FL FKK+K+ +N   Y  LA GQ+P FMV AC+DSRVCPS++L FQPGEAF+V
Sbjct: 3   SERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVV 62

Query: 150 RNVANMVPPCESGPS-ETNAALEFAVNSVKI 179
           RNVAN+VPP +      T AA+E+AV  +K+
Sbjct: 63  RNVANLVPPYDQAKYAGTGAAIEYAVLHLKV 93
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 239 Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 242 Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 169 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query184
d1ddza2 239 beta-carbonic anhydrase {Red alga (Porphyridium pu 100.0
d1ekja_ 210 beta-carbonic anhydrase {Pea (Pisum sativum) [TaxI 100.0
d1i6pa_ 214 beta-carbonic anhydrase {Escherichia coli [TaxId: 99.98
d1ddza1 242 beta-carbonic anhydrase {Red alga (Porphyridium pu 99.97
d1g5ca_169 beta-carbonic anhydrase {Archaeon Methanobacterium 99.93
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Red alga (Porphyridium purpureum) [TaxId: 35688]

Probab=100.00  E-value=1.8e-36  Score=254.98  Aligned_cols=127  Identities=23%  Similarity=0.311  Sum_probs=115.6

Q ss_pred             hhhhhccCccccccccchhhhHHhhccccccccccCCHHHHHHHHHHHHHHhhhhhcccChHHHHhhhcCCCCcEEEEee
Q 030013           49 TSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIAC  128 (184)
Q Consensus        49 ~~~~~~~~~~~~a~~~~~~~t~el~~~~~~~~~~~~~~~~~l~~Ll~GN~rF~~~~~~~~~~~~~~La~gQ~P~~lvItC  128 (184)
                      .+++-+.++...+.++++.+|+++.+...      ....+.+++|++||++|+...+.++|++|++|++||+|+++||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~n~~~~~~~~~~~p~~f~~la~gQ~P~~~vi~C   78 (239)
T d1ddza2           5 PLVQVTKGGESELDSTMEKLTAELVQQTP------GKLKEGANRVFVNNENWRQKMLKQDPQFFSNLAHTQTPEILWIGC   78 (239)
T ss_dssp             CCCCSSSSCCCHHHHHHHHHHHHHHTSCT------TCCCCCSSHHHHHHHHHHHHHHHHCTTHHHHHTTCCCCSEEEEEE
T ss_pred             CcceecccchhhHHhhhHhhhhhhhccch------hhHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhcCCCCCeEEEee
Confidence            56788899999999999999999977532      123357899999999999998889999999999999999999999


Q ss_pred             cCCCCCcccccCCCCCceEEEeecCCCCCCCCCCCcchhHHHHHHHHhcCCCcccC
Q 030013          129 ADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKITPVAG  184 (184)
Q Consensus       129 sDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~sv~aSLEYAV~~LgV~~IV~  184 (184)
                      |||||+|+.|||++|||+||+||+||+|+++|.   ++.++|||||.+|||++|||
T Consensus        79 sDSRv~pe~if~~~~GdlFVvRNaGN~v~~~d~---~~~~sleyAv~~L~v~~IvV  131 (239)
T d1ddza2          79 ADSRVPANQIINLPAGEVFVHRNIANQCIHSDM---SFLSVLQYAVQYLKVKRVVV  131 (239)
T ss_dssp             TTCSSCHHHHTTCCTTSEEEEEETTCCCCTTCH---HHHHHHHHHHHTSCCSEEEE
T ss_pred             ecCCCCHHHHcCCCCCceEEEeeecCcCCCccc---hhhhhhhhhheecCccEEEE
Confidence            999999999999999999999999999999763   78999999999999999986
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure