Citrus Sinensis ID: 030030

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MAKSVTCLVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSSGSQRLEYYSNESYGEL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccEEEcccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccEcccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccHHccccccccccccc
Coil and Loop (DISEMBL)
MAKSVTCLVITLAIFSVAASIDEKCGACNAVAEELERglskektrnHLDLRhrldskgqregklIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTrqdwirvdnwenlsISKQEAKAYANDISTYCGRLLEETEDELAKLIKkgslrtgdVSKVLCEDLSkhcnkssgsqrleyysnesygel
Flexible Loop (DISEMBL)
MAKSVTCLVITLAIFSVAASIDEKCGACNAVAEELerglskektrnhldlrhrldskgqregklidyrvseLRVVELLDGLCDKMQDYTlekidstrqdwirvDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLikkgslrtgdVSKVLCEDLskhcnkssgsqrleyysnesygel
Low Complexity Region (SEG)
MAKSVTCLVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSSGSQRLEYYSNESYGEL
Disordered region (IsUnstruct)
****VTCLVITLAIFSVAASIDEKCGACNAVAE*****************************KLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCED*************************
Disordered Region (DISOPRED)
*AKSVTCLVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRL***********DYRVSELRVVELLDGLCDKMQDYTLEKIDST**********************YANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHC********************
Disordered Region (DISEMBL)
MAKSVTCLVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSSGSQRLEYYSNESYGEL
Disordered Region (DISPRO)
MAKSVTCLVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNK******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKSVTCLVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSSGSQRLEYYSNESYGEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q2L6L1	187	Protein canopy-1 OS=Danio	yes	no	0.891	0.877	0.280	6e-09
Q5M7D4	181	Protein canopy homolog 1	N/A	no	0.646	0.657	0.302	2e-08
Q9Y2B0	182	Protein canopy homolog 2	yes	no	0.777	0.785	0.292	4e-06
Q9QXT0	182	Protein canopy homolog 2	yes	no	0.777	0.785	0.292	5e-06

>sp|Q2L6L1|CNPY1_DANRE Protein canopy-1 OS=Danio rerio GN=cnpy1 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 7   CLVITLAIFSVAASIDEK-----CGACNAVAEELERGLSKEKTRNHLDLR-HRLDSKGQR 60
           CLV+  A   V  +  +K     C AC A+A+E+   +S+   +  + +   RL   G  
Sbjct: 9   CLVLVAAFMLVKTTESKKDEALYCSACMAIADEINYSISQTDPKKMIHVGGFRLKPDGSL 68

Query: 61  EGKLIDYRVSELRVVELLDGLCDKMQDYTL-EKIDSTRQDWIRV-------DNWENLSIS 112
             K +    SE  + ELL+ +C  M DY L E  D+  + + R         N+ +    
Sbjct: 69  TDKKVPLARSETYLTELLEEVCKSMSDYALYENPDTKEKSYKRFAPRDNDGGNFPDFKNF 128

Query: 113 KQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSSGSQR 172
           K +    ++ +   C  ++EE ED++  L    S     V+K LC ++S HC KSS  Q 
Sbjct: 129 KFDGPESSSALKFACESIVEELEDDIISLFASDS---DHVAKTLCSEVSDHC-KSSVFQH 184

Query: 173 LE 174
            E
Sbjct: 185 SE 186

Involved in the maintenance of the midbrain-hindbrain boundary (MHB) organizer. Contributes to a positive-feedback loop of FGF signaling in the MHB, enabling the MHB to exert its role as an organizer for the tectal and cerebellar development.
Danio rerio (taxid: 7955)

>sp|Q5M7D4|CNPY1_XENLA Protein canopy homolog 1 OS=Xenopus laevis GN=cnpy1 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 10/129 (7%)

Query: 25  CGACNAVAEELERGLSKEKTRNHLDL-RHRLDSKGQREGKLIDYRVSELRVVELLDGLCD 83
           CGAC A+ +EL   + K   +  +D+   R+   G++E   + +  SEL + ++L+ +C+
Sbjct: 29  CGACRALVDELLYEIRKVNPKKTVDVGSFRISPDGKQEQNKVPFAKSELYLTDVLEEICE 88

Query: 84  KMQDYTLEKIDSTRQD--WIRVDNWENLSISKQEAKAY------ANDISTYCGRLLEETE 135
           KM DY L  +D T Q+  + R    +N  I   + K +      +N +   C R++EE E
Sbjct: 89  KMNDYGL-YVDPTTQEKSYKRFAPRDNEGIGSVDFKNFQFNPEESNSLKYACERVVEEHE 147

Query: 136 DELAKLIKK 144
           DE+  +I K
Sbjct: 148 DEVLSVITK 156

Plays an role in early embryonic development.

Xenopus laevis (taxid: 8355)

>sp|Q9Y2B0|CNPY2_HUMAN Protein canopy homolog 2 OS=Homo sapiens GN=CNPY2 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 14/157 (8%)

Query: 20  SIDEKCGACNAVAEELERGLSKEKTRNHLDL-RHRLDSKGQREGKLIDYRVSELRVVELL 78
           S D  CGAC A+ +ELE  +++   +  + +   R++  G +    + Y  SE  + ELL
Sbjct: 23  SQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELL 82

Query: 79  DGLCDKMQDYTLEKIDST--RQDWIRV--DNWENLSISKQEAKAYANDIS----TYCGRL 130
           + +CD+M++Y  E+ID +  R++++RV   N E+  +  Q  +   +DIS      C  +
Sbjct: 83  EEICDRMKEYG-EQIDPSTHRKNYVRVVGRNGESSELDLQGIR-IDSDISGTLKFACESI 140

Query: 131 LEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKS 167
           +EE EDEL +     S    +V   LC   +  C+ +
Sbjct: 141 VEEYEDELIEFF---SREADNVKDKLCSKRTDLCDHA 174

Positive regulator of neurite outgrowth by stabilizing myosin regulatory light chain (MRLC). It prevents MIR-mediated MRLC ubiquitination and its subsequent proteasomal degradation.

Homo sapiens (taxid: 9606)

>sp|Q9QXT0|CNPY2_MOUSE Protein canopy homolog 2 OS=Mus musculus GN=Cnpy2 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 14/157 (8%)

Query: 20  SIDEKCGACNAVAEELERGLSKEKTRNHLDL-RHRLDSKGQREGKLIDYRVSELRVVELL 78
           S D  CGAC A+ +ELE  +++   +  + +   R++  G +    + Y  SE  + ELL
Sbjct: 23  SQDLHCGACRALVDELEWEIARVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELL 82

Query: 79  DGLCDKMQDYTLEKIDST--RQDWIRV--DNWENLSISKQEAKAYANDIS----TYCGRL 130
           + +CD+M++Y  E+ID +  R++++RV   N E+  +  Q  +   +DIS      C  +
Sbjct: 83  EEVCDRMKEYG-EQIDPSTHRKNYVRVVSRNGESSELDLQGIR-IDSDISGTLKFACESI 140

Query: 131 LEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKS 167
           +EE EDEL +     S    +V   LC   +  C+ +
Sbjct: 141 VEEYEDELIEFF---SREADNVKDKLCSKRTDLCDHA 174

Positive regulator of neurite outgrowth by stabilizing myosin regulatory light chain (MRLC). It prevents MIR-mediated MRLC ubiquitination and its subsequent proteasomal degradation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
224083338	186	predicted protein [Populus trichocarpa]	1.0	0.989	0.698	1e-70
225457592	187	PREDICTED: protein canopy homolog 1 [Vit	0.923	0.909	0.741	9e-70
255539272	187	conserved hypothetical protein [Ricinus	1.0	0.983	0.673	6e-67
147832738	200	hypothetical protein VITISV_021336 [Viti	0.929	0.855	0.663	3e-64
449455629	184	PREDICTED: protein canopy homolog 1-like	0.951	0.951	0.706	5e-63
356517249	191	PREDICTED: protein canopy homolog 1-like	0.967	0.931	0.668	8e-61
357467125	180	Canopy-like protein [Medicago truncatula	0.940	0.961	0.637	9e-58
18400653	182	uncharacterized protein [Arabidopsis tha	0.885	0.895	0.670	1e-54
149944313	182	At1g42480 [Arabidopsis thaliana]	0.885	0.895	0.670	1e-54
297846718	182	At1g42480 [Arabidopsis lyrata subsp. lyr	0.896	0.906	0.662	3e-54

>gi|224083338|ref|XP_002306987.1| predicted protein [Populus trichocarpa] gi|222856436|gb|EEE93983.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/186 (69%), Positives = 159/186 (85%), Gaps = 2/186 (1%)

Query: 1   MAKSVTCLVITLAI--FSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKG 58
           MA+    L++ L +  F+V +SID+KC ACNAVAEE+E GLS EK RNHLD+RHRLDSKG
Sbjct: 1   MAELTAWLLMILVVLTFTVVSSIDDKCAACNAVAEEIENGLSNEKPRNHLDMRHRLDSKG 60

Query: 59  QREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKA 118
           QR+GK+IDYRVSELRVVELLDGLCDKMQDYTL+K+DS R +W+RVD+W+NL+I+KQEAKA
Sbjct: 61  QRKGKVIDYRVSELRVVELLDGLCDKMQDYTLQKVDSKRYEWVRVDSWDNLAINKQEAKA 120

Query: 119 YANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSSGSQRLEYYSN 178
           Y+ DIS+YCGRLLEETEDELA+ IKKGS++ GDVSK+LC+DLSKHCN SS S + +   +
Sbjct: 121 YSKDISSYCGRLLEETEDELAERIKKGSVKVGDVSKILCQDLSKHCNMSSDSHQADADDD 180

Query: 179 ESYGEL 184
           E  GEL
Sbjct: 181 EPDGEL 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457592|ref|XP_002273352.1| PREDICTED: protein canopy homolog 1 [Vitis vinifera] gi|297745574|emb|CBI40739.3| unnamed protein product [Vitis vinifera]

 Score =  268 bits (684), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 126/170 (74%), Positives = 153/170 (90%)

Query: 1   MAKSVTCLVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQR 60
           MA ++  + +  AIFSVA  ID+KC ACNAVAEELE GLS EK RNHLD+RHRLDSKGQR
Sbjct: 1   MAVAMVRIAMIFAIFSVAFCIDDKCAACNAVAEELEFGLSNEKPRNHLDMRHRLDSKGQR 60

Query: 61  EGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYA 120
           +GK+IDYRVSELRVVELLDGLC+KMQDYTLEKIDSTR++W++VD+W+N++ +KQEA+AY+
Sbjct: 61  KGKVIDYRVSELRVVELLDGLCEKMQDYTLEKIDSTRREWVKVDDWDNITTNKQEARAYS 120

Query: 121 NDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSSGS 170
            DIS+YCGRLLEETEDELA LIKKGS++TG+VSKVLC+DLSKHC+ +S S
Sbjct: 121 KDISSYCGRLLEETEDELADLIKKGSVKTGEVSKVLCQDLSKHCSVTSFS 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539272|ref|XP_002510701.1| conserved hypothetical protein [Ricinus communis] gi|223551402|gb|EEF52888.1| conserved hypothetical protein [Ricinus communis]

 Score =  258 bits (660), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 126/187 (67%), Positives = 157/187 (83%), Gaps = 3/187 (1%)

Query: 1   MAKSVTCLV-ITLAIFSVA--ASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSK 57
           MAK V  +V + LA+ +V   +S+D+KC AC AVA+ELE GLS EK RNHLD+R+RL+SK
Sbjct: 1   MAKIVVAMVTLLLAVLTVTVFSSVDDKCSACYAVADELEHGLSNEKPRNHLDMRNRLNSK 60

Query: 58  GQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAK 117
           GQREGK+IDYRVSELRVVELLDGLCDKMQDYTL+K+DSTR  W++VDNW+NL+ +KQEA+
Sbjct: 61  GQREGKVIDYRVSELRVVELLDGLCDKMQDYTLQKVDSTRSSWVKVDNWDNLTTNKQEAR 120

Query: 118 AYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSSGSQRLEYYS 177
           A++  +S+YCGRLLEETEDELA+LIKKGS++ G VSKVLCEDLS HC  SSGS ++    
Sbjct: 121 AFSKALSSYCGRLLEETEDELAELIKKGSVKVGGVSKVLCEDLSNHCTHSSGSHQVNEDD 180

Query: 178 NESYGEL 184
           +E+ GEL
Sbjct: 181 DEADGEL 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832738|emb|CAN72605.1| hypothetical protein VITISV_021336 [Vitis vinifera]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/184 (66%), Positives = 149/184 (80%), Gaps = 13/184 (7%)

Query: 1   MAKSVTCLVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQR 60
           MA ++  + +  AIFSVA  ID+KC ACNAVAEELE GLS EK RNHLD+RHRLDSKGQR
Sbjct: 1   MAVAMVRIAMIFAIFSVAFCIDDKCAACNAVAEELEFGLSNEKPRNHLDMRHRLDSKGQR 60

Query: 61  EGKLID-------------YRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWE 107
           +GK  +              RVSELRVVELLDGLC+KMQDYTLEKIDSTR++W++VD+W+
Sbjct: 61  KGKRCEEEREVPGGARGLVVRVSELRVVELLDGLCEKMQDYTLEKIDSTRREWVKVDDWD 120

Query: 108 NLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKS 167
           N++ +KQEA+AY+ DIS+YCGRLLEETEDELA LIKKGS++TG+VSKVLC+DLSKHC+ +
Sbjct: 121 NITTNKQEARAYSKDISSYCGRLLEETEDELADLIKKGSVKTGEVSKVLCQDLSKHCSVT 180

Query: 168 SGSQ 171
           S   
Sbjct: 181 SSPP 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455629|ref|XP_004145555.1| PREDICTED: protein canopy homolog 1-like [Cucumis sativus] gi|449485101|ref|XP_004157070.1| PREDICTED: protein canopy homolog 1-like [Cucumis sativus]

 Score =  245 bits (626), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 125/177 (70%), Positives = 148/177 (83%), Gaps = 2/177 (1%)

Query: 8   LVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDY 67
           L++ L   +V   ID+KC ACNAVAEE+E GLS EK RNHLD+RHRLDSKGQR+GK+IDY
Sbjct: 10  LLLLLIYSAVVDCIDDKCAACNAVAEEIEHGLSNEKPRNHLDMRHRLDSKGQRKGKVIDY 69

Query: 68  RVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYANDISTYC 127
           RVSELRVVELLDGLC+KMQDYT+EK  S  Q WI+VDNW+NL+ +KQEA+AY+ DISTYC
Sbjct: 70  RVSELRVVELLDGLCEKMQDYTIEKTGSAGQQWIKVDNWDNLT-NKQEARAYSKDISTYC 128

Query: 128 GRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSSGSQRLEYYSNESYGEL 184
           GRLLEETED+LA+LIKKGS+  GDVSKVLC DLSKHC+K+S  Q  +   +ES GEL
Sbjct: 129 GRLLEETEDDLAELIKKGSVSPGDVSKVLCHDLSKHCSKAS-VQLNDDDDDESDGEL 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517249|ref|XP_003527301.1| PREDICTED: protein canopy homolog 1-like [Glycine max]

 Score =  238 bits (607), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 121/181 (66%), Positives = 148/181 (81%), Gaps = 3/181 (1%)

Query: 4   SVTCLVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGK 63
           ++T +V  L++ S A  +D+KC AC AVAEELE GLS E+ RNHLD+RHRLDSKGQREGK
Sbjct: 14  TLTLVVGMLSMLSDA--VDDKCAACKAVAEELEIGLSTERPRNHLDMRHRLDSKGQREGK 71

Query: 64  LIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYANDI 123
           LIDYRVSELRVVELLDGLC+KMQDYTL KID+   +W +VD+W+NL+ +KQEA+AY+ DI
Sbjct: 72  LIDYRVSELRVVELLDGLCEKMQDYTL-KIDTNTYEWFKVDSWDNLTTNKQEARAYSKDI 130

Query: 124 STYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSSGSQRLEYYSNESYGE 183
           S+YCGRLLEETEDE A+LIKKGS++ G VSKVLC+DLSKHC++ S S   E   +   GE
Sbjct: 131 SSYCGRLLEETEDEFAELIKKGSVKVGGVSKVLCQDLSKHCSQMSVSYAAEVDDDGHDGE 190

Query: 184 L 184
           L
Sbjct: 191 L 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467125|ref|XP_003603847.1| Canopy-like protein [Medicago truncatula] gi|355492895|gb|AES74098.1| Canopy-like protein [Medicago truncatula] gi|388499672|gb|AFK37902.1| unknown [Medicago truncatula]

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 111/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 1   MAKSVTCLVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQR 60
           M  S+  L I L +  ++ ++D+KC AC AVA ELE GL++EK RNHLD+RHRLD+KGQR
Sbjct: 1   MKISMFHLCIFLLLIGMSHAVDDKCAACKAVAGELEIGLAREKPRNHLDMRHRLDAKGQR 60

Query: 61  EGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYA 120
           +GKLIDYR+SELRVVELLD LC+KMQDYTL +I     +W +V +W+NL  +KQEA+A++
Sbjct: 61  QGKLIDYRISELRVVELLDDLCEKMQDYTL-RIFPDSHEWYKVGSWDNLRTNKQEARAHS 119

Query: 121 NDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSSGSQRLE 174
            DIS+YCGRLLEETEDELA+LIKKGS++ GDVSKVLC+DLSKHC+++S S   E
Sbjct: 120 KDISSYCGRLLEETEDELAELIKKGSVKVGDVSKVLCQDLSKHCDQTSVSDEAE 173

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400653|ref|NP_564481.1| uncharacterized protein [Arabidopsis thaliana] gi|51969850|dbj|BAD43617.1| unknown protein [Arabidopsis thaliana] gi|332193799|gb|AEE31920.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/164 (67%), Positives = 139/164 (84%), Gaps = 1/164 (0%)

Query: 1   MAKSVTCLVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQR 60
           MAK V    + +AIFS  +S+D+KC ACNAVAEELE  L KEK RNHLD+R+RL+SKGQR
Sbjct: 1   MAKLVLFTAVIIAIFSHGSSVDDKCAACNAVAEELELQLLKEKPRNHLDMRNRLNSKGQR 60

Query: 61  EGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYA 120
           EGK+IDYR+S+LRVV+LLDGLCD+MQDYTL+K++   + W++V N++NL+ +KQEAKA+A
Sbjct: 61  EGKVIDYRISDLRVVDLLDGLCDRMQDYTLQKVEPKNRQWVKVGNFDNLT-NKQEAKAHA 119

Query: 121 NDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHC 164
           NDISTYCGRLLEETEDEL ++IK GSL+ G+V KVLC+ LS HC
Sbjct: 120 NDISTYCGRLLEETEDELGEVIKNGSLKAGEVRKVLCQTLSNHC 163

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|149944313|gb|ABR46199.1| At1g42480 [Arabidopsis thaliana]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/164 (67%), Positives = 139/164 (84%), Gaps = 1/164 (0%)

Query: 1   MAKSVTCLVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQR 60
           MAK V    + +AIFS  +S+D+KC ACNAVAEELE  L KEK RNHLD+R+RL+SKGQR
Sbjct: 1   MAKLVLFTAVIIAIFSHGSSVDDKCAACNAVAEELELQLLKEKPRNHLDMRNRLNSKGQR 60

Query: 61  EGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYA 120
           EGK+IDYR+S+LRVV+LLDGLCD+MQDYTL+K++   + W++V N++NL+ +KQEAKA+A
Sbjct: 61  EGKVIDYRISDLRVVDLLDGLCDRMQDYTLQKVEPKNRQWVKVGNFDNLT-NKQEAKAHA 119

Query: 121 NDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHC 164
           NDISTYCGRLLEETEDEL ++IK GSL+ G+V KVLC+ LS HC
Sbjct: 120 NDISTYCGRLLEETEDELGEVIKNGSLKAGEVRKVLCQTLSNHC 163

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846718|ref|XP_002891240.1| At1g42480 [Arabidopsis lyrata subsp. lyrata] gi|297337082|gb|EFH67499.1| At1g42480 [Arabidopsis lyrata subsp. lyrata]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 141/166 (84%), Gaps = 1/166 (0%)

Query: 1   MAKSVTCLVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQR 60
           MAK +    + +AI S  AS+D+KC ACNAVAEELE  L KEK RNHLD+R+RL+SKGQR
Sbjct: 1   MAKLMLFTAVIIAIISHGASVDDKCAACNAVAEELELQLLKEKPRNHLDMRNRLNSKGQR 60

Query: 61  EGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYA 120
           EGK+IDYR+S+LRVV+LLDGLCD+MQDYTL+K++S  + W++V N++NL+ +KQEAKA+A
Sbjct: 61  EGKVIDYRISDLRVVDLLDGLCDRMQDYTLQKVESKNRQWVKVGNFDNLT-NKQEAKAHA 119

Query: 121 NDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNK 166
           NDISTYCGRLLEETEDEL ++IK GSL+ G+V KVLC+ LS HC++
Sbjct: 120 NDISTYCGRLLEETEDELGEVIKNGSLKAGEVRKVLCQTLSNHCSQ 165

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2206100	182	AT1G42480 "AT1G42480" [Arabido	0.907	0.917	0.666	1.5e-58
ZFIN|ZDB-GENE-060315-3	187	cnpy1 "canopy1" [Danio rerio (	0.891	0.877	0.285	1.3e-11
UNIPROTKB|Q9Y2B0	182	CNPY2 "Protein canopy homolog	0.766	0.774	0.309	7.4e-11
MGI|MGI:1928477	182	Cnpy2 "canopy 2 homolog (zebra	0.766	0.774	0.309	7.4e-11
UNIPROTKB|Q1LZ72	182	CNPY2 "Canopy 2 homolog (Zebra	0.766	0.774	0.309	9.4e-11
UNIPROTKB|F1SLY7	182	CNPY2 "Uncharacterized protein	0.766	0.774	0.309	1.2e-10
RGD|1589072	182	Cnpy2 "canopy 2 homolog (zebra	0.766	0.774	0.303	3.2e-10
FB|FBgn0263260	189	sel "seele" [Drosophila melano	0.864	0.841	0.239	1.8e-09
FB|FBgn0036847	221	CG11577 [Drosophila melanogast	0.391	0.325	0.350	2.6e-05
UNIPROTKB|Q3SWX1	239	CNPY4 "Protein canopy homolog	0.369	0.284	0.366	0.00015

TAIR|locus:2206100 AT1G42480 "AT1G42480" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 112/168 (66%), Positives = 142/168 (84%)

Query:     1 MAKSVTCLVITLAIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQR 60
             MAK V    + +AIFS  +S+D+KC ACNAVAEELE  L KEK RNHLD+R+RL+SKGQR
Sbjct:     1 MAKLVLFTAVIIAIFSHGSSVDDKCAACNAVAEELELQLLKEKPRNHLDMRNRLNSKGQR 60

Query:    61 EGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYA 120
             EGK+IDYR+S+LRVV+LLDGLCD+MQDYTL+K++   + W++V N++NL+ +KQEAKA+A
Sbjct:    61 EGKVIDYRISDLRVVDLLDGLCDRMQDYTLQKVEPKNRQWVKVGNFDNLT-NKQEAKAHA 119

Query:   121 NDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSS 168
             NDISTYCGRLLEETEDEL ++IK GSL+ G+V KVLC+ LS HC +SS
Sbjct:   120 NDISTYCGRLLEETEDELGEVIKNGSLKAGEVRKVLCQTLSNHCRQSS 167

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

ZFIN|ZDB-GENE-060315-3 cnpy1 "canopy1" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 52/182 (28%), Positives = 83/182 (45%)

Query:     7 CLVITLAIFSVAASIDEK-----CGACNAVAEELERGLSKEKTRNHLDLR-HRLDSKGQR 60
             CLV+  A   V  +  +K     C AC A+A+E+   +S+   +  + +   RL   G  
Sbjct:     9 CLVLVAAFMLVKTTESKKDEALYCSACMAIADEINYSISQTDPKKMIHVGGFRLKPDGSL 68

Query:    61 EGKLIDYRVSELRVVELLDGLCDKMQDYTL-EKIDSTRQDWIRV---DN----WENLSIS 112
               K +    SE  + ELL+ +C  M DY L E  D+  + + R    DN    + +    
Sbjct:    69 TDKKVPLARSETYLTELLEEVCKSMSDYALYENPDTKEKSYKRFAPRDNDGGNFPDFKNF 128

Query:   113 KQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSSGSQR 172
             K +    ++ +   C  ++EE ED++  L    S     V+K LC ++S HC KSS  Q 
Sbjct:   129 KFDGPESSSALKFACESIVEELEDDIISLFASDS---DHVAKTLCSEVSDHC-KSSVFQH 184

Query:   173 LE 174
              E
Sbjct:   185 SE 186

GO:0030917 "midbrain-hindbrain boundary development" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IGI

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0040036 "regulation of fibroblast growth factor receptor signaling pathway" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0070121 "Kupffer's vesicle development" evidence=IMP

UNIPROTKB|Q9Y2B0 CNPY2 "Protein canopy homolog 2" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 48/155 (30%), Positives = 82/155 (52%)

Query:    20 SIDEKCGACNAVAEELERGLSKEKTRNHLDL-RHRLDSKGQREGKLIDYRVSELRVVELL 78
             S D  CGAC A+ +ELE  +++   +  + +   R++  G +    + Y  SE  + ELL
Sbjct:    23 SQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELL 82

Query:    79 DGLCDKMQDYTLEKID-ST-RQDWIRV--DNWENLSISKQEAKAYANDIS-TY---CGRL 130
             + +CD+M++Y  E+ID ST R++++RV   N E+  +  Q  +   +DIS T    C  +
Sbjct:    83 EEICDRMKEYG-EQIDPSTHRKNYVRVVGRNGESSELDLQGIRI-DSDISGTLKFACESI 140

Query:   131 LEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN 165
             +EE EDEL +   +      +V   LC   +  C+
Sbjct:   141 VEEYEDELIEFFSR---EADNVKDKLCSKRTDLCD 172

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0010629 "negative regulation of gene expression" evidence=ISS

GO:0010988 "regulation of low-density lipoprotein particle clearance" evidence=ISS

GO:0045716 "positive regulation of low-density lipoprotein particle receptor biosynthetic process" evidence=ISS

MGI|MGI:1928477 Cnpy2 "canopy 2 homolog (zebrafish)" [Mus musculus (taxid:10090)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 48/155 (30%), Positives = 82/155 (52%)

Query:    20 SIDEKCGACNAVAEELERGLSKEKTRNHLDL-RHRLDSKGQREGKLIDYRVSELRVVELL 78
             S D  CGAC A+ +ELE  +++   +  + +   R++  G +    + Y  SE  + ELL
Sbjct:    23 SQDLHCGACRALVDELEWEIARVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELL 82

Query:    79 DGLCDKMQDYTLEKID-ST-RQDWIRV--DNWENLSISKQEAKAYANDIS-TY---CGRL 130
             + +CD+M++Y  E+ID ST R++++RV   N E+  +  Q  +   +DIS T    C  +
Sbjct:    83 EEVCDRMKEYG-EQIDPSTHRKNYVRVVSRNGESSELDLQGIRI-DSDISGTLKFACESI 140

Query:   131 LEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN 165
             +EE EDEL +   +      +V   LC   +  C+
Sbjct:   141 VEEYEDELIEFFSR---EADNVKDKLCSKRTDLCD 172

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IMP

GO:0010988 "regulation of low-density lipoprotein particle clearance" evidence=IMP

GO:0045716 "positive regulation of low-density lipoprotein particle receptor biosynthetic process" evidence=IMP

UNIPROTKB|Q1LZ72 CNPY2 "Canopy 2 homolog (Zebrafish)" [Bos taurus (taxid:9913)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 48/155 (30%), Positives = 82/155 (52%)

Query:    20 SIDEKCGACNAVAEELERGLSKEKTRNHLDL-RHRLDSKGQREGKLIDYRVSELRVVELL 78
             S D  CGAC A+ +ELE  +++   +  + +   R++  G +    + Y  SE  + ELL
Sbjct:    23 SQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELL 82

Query:    79 DGLCDKMQDYTLEKID-ST-RQDWIRV--DNWENLSISKQEAKAYANDIS-TY---CGRL 130
             + +CD+M++Y  E+ID ST R++++RV   N E+  +  Q  +   +DIS T    C  +
Sbjct:    83 EEVCDRMKEYG-EQIDPSTHRKNYVRVVGRNGESSELDLQGIRI-DSDISGTLKFACESI 140

Query:   131 LEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN 165
             +EE EDEL +   +      +V   LC   +  C+
Sbjct:   141 VEEYEDELIEFFSR---EADNVKDKLCSKRTDLCD 172

GO:0045716 "positive regulation of low-density lipoprotein particle receptor biosynthetic process" evidence=IEA

GO:0010988 "regulation of low-density lipoprotein particle clearance" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

UNIPROTKB|F1SLY7 CNPY2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 48/155 (30%), Positives = 82/155 (52%)

Query:    20 SIDEKCGACNAVAEELERGLSKEKTRNHLDL-RHRLDSKGQREGKLIDYRVSELRVVELL 78
             S D  CGAC A+ +ELE  +++   +  + +   R++  G +    + Y  SE  + ELL
Sbjct:    23 SQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELL 82

Query:    79 DGLCDKMQDYTLEKID-ST-RQDWIRV--DNWENLSISKQEAKAYANDIS-TY---CGRL 130
             + +CD+M++Y  E+ID ST R++++RV   N E+  +  Q  +   +DIS T    C  +
Sbjct:    83 EEVCDRMKEYG-EQIDPSTHRKNYVRVVGRNGESNELDLQGIRI-DSDISGTLKFACESI 140

Query:   131 LEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN 165
             +EE EDEL +   +      +V   LC   +  C+
Sbjct:   141 VEEYEDELIEFFSR---EADNVKDKLCSKRTDLCD 172

GO:0045716 "positive regulation of low-density lipoprotein particle receptor biosynthetic process" evidence=IEA

GO:0010988 "regulation of low-density lipoprotein particle clearance" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

RGD|1589072 Cnpy2 "canopy 2 homolog (zebrafish)" [Rattus norvegicus (taxid:10116)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 47/155 (30%), Positives = 81/155 (52%)

Query:    20 SIDEKCGACNAVAEELERGLSKEKTRNHLDL-RHRLDSKGQREGKLIDYRVSELRVVELL 78
             S D  CGAC A+ +ELE  +++   +  + +   R++  G +    + Y  SE  + ELL
Sbjct:    23 SQDLHCGACRALVDELEWEIARVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELL 82

Query:    79 DGLCDKMQDYTLEKID-ST-RQDWIRVDNWENLSISKQEAKAYA--NDIS-TY---CGRL 130
             + +CD+M++Y  E+ID ST R++++RV    N   S+ + +     +DIS T    C  +
Sbjct:    83 EEICDRMKEYG-EQIDPSTHRKNYVRVVG-RNGGSSELDLQGIRIDSDISGTLKFACESI 140

Query:   131 LEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN 165
             +EE EDEL +   +      +V   LC   +  C+
Sbjct:   141 VEEYEDELIEFFSR---EADNVKDKLCSKRTDLCD 172

GO:0010629 "negative regulation of gene expression" evidence=IEA;ISO

GO:0010988 "regulation of low-density lipoprotein particle clearance" evidence=IEA;ISO

GO:0045716 "positive regulation of low-density lipoprotein particle receptor biosynthetic process" evidence=IEA;ISO

FB|FBgn0263260 sel "seele" [Drosophila melanogaster (taxid:7227)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 40/167 (23%), Positives = 75/167 (44%)

Query:    20 SIDEKCGACNAVAEELERGLSKEKTRNHLDLR-HRLDSKGQREGKLIDYRVSELRVVELL 78
             S + KC  C AV  ELE  ++KE      D+   RLD++G    K +    SE+ + EL+
Sbjct:    22 SREVKCHVCKAVVTELEEAIAKEDPHKMADVSGFRLDAQGNSISKKVRLVKSEMFLTELM 81

Query:    79 DGLCDKMQDYTLEKIDSTRQDWI--RVDNWENLSISKQEAKAYANDIST----YCGRLLE 132
             + +C+KM DY      S  +  +   + N +    S         D++     +C  +LE
Sbjct:    82 EKICEKMDDYLKATYKSNGKFTLLKMIINGQMNPDSSLVDFVQDGDLNKSLGHFCNEVLE 141

Query:   133 ETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSSGSQRLEYYSNE 179
             + ++   K  +   L   D+   +C + + +C++S   +  ++   E
Sbjct:   142 DNDEIFVKAFQAEELGN-DLDIKICSEQASYCDESPVQEEYDFDGKE 187

GO:0003674 "molecular_function" evidence=ND

GO:0007311 "maternal specification of dorsal/ventral axis, oocyte, germ-line encoded" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0050708 "regulation of protein secretion" evidence=IMP

GO:0009951 "polarity specification of dorsal/ventral axis" evidence=IMP

GO:0070613 "regulation of protein processing" evidence=IMP

FB|FBgn0036847 CG11577 [Drosophila melanogaster (taxid:7227)]

 Score = 115 (45.5 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 27/77 (35%), Positives = 48/77 (62%)

Query:    24 KCGACNAVAEELERGLSKE-KTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLC 82
             +C AC  +A ELE  L +  K+ + +++ + +D    +  K  +YR SELR++E L+ +C
Sbjct:    35 RCEACKILATELEARLGETGKSHDVIEIGYSVDDVKPK--KRTEYRRSELRLLESLENVC 92

Query:    83 DKMQDYTL--EKIDSTR 97
             +++ +Y L  E+ DSTR
Sbjct:    93 ERVLEYNLHKERSDSTR 109

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3SWX1 CNPY4 "Protein canopy homolog 4" [Bos taurus (taxid:9913)]

 Score = 110 (43.8 bits), Expect = 0.00015, P = 0.00015
 Identities = 26/71 (36%), Positives = 45/71 (63%)

Query:    21 IDEKCGACNAVAEELERGLSKE-KTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLD 79
             +  KC  C  ++ EL+  LS+  ++R  L+L   LD+ G+R+ + I Y VSE R+ E L+
Sbjct:    33 LPSKCEVCKLLSLELQEELSRTGRSREVLELGQVLDT-GKRK-RHIPYSVSETRLEEALE 90

Query:    80 GLCDKMQDYTL 90
              LC+++ DY++
Sbjct:    91 NLCERILDYSV 101

GO:0005576 "extracellular region" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_V1665 hypothetical protein (187 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
pfam11938	151	pfam11938, DUF3456, TLR4 regulator and MIR-interac	2e-42

>gnl|CDD|221329 pfam11938, DUF3456, TLR4 regulator and MIR-interacting MSAP

 Score =  139 bits (351), Expect = 2e-42
 Identities = 58/152 (38%), Positives = 80/152 (52%), Gaps = 9/152 (5%)

Query: 22  DEKCGACNAVAEELERGLSKEKTRNHLDLRH-RLDSKGQREGKLIDYRVSELRVVELLDG 80
             KC AC A+ +ELE  LSK   +  +D+   RLD  G+R+GK   Y  SELR+ ELL+G
Sbjct: 1   PLKCEACKALVDELEEALSKTDPKKEVDVGGFRLDPDGKRKGKKKYYARSELRLTELLEG 60

Query: 81  LCDKMQDYTLEKIDSTRQDWIRVDNWEN-------LSISKQEAKAYANDISTYCGRLLEE 133
           +CD+M DY L K  S  + + +  +          L   K +  A   ++   C RLLEE
Sbjct: 61  VCDRMLDYNLHKERSGSRRFAKGMSPTFQTLHGLVLKGVKVDPSAEVAELKFQCERLLEE 120

Query: 134 TEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN 165
            EDE+ +  K   L   D+SK LC + SK C 
Sbjct: 121 HEDEIEEWYKNEQLED-DLSKFLCSEHSKACL 151

This family of proteins, found from plants to humans, is PRAT4 (A and B), a Protein Associated with Toll-like receptor 4. The Toll family of receptors - TLRs - plays an essential role in innate recognition of microbial products, the first line of defence against bacterial infection. PRAT4A influences the subcellular distribution and the strength of TLR responses and alters the relative activity of each TLR. PRAT4B regulates TLR4 trafficking to the cell surface and the extent of its expression there. TLR4 recognizes lipopolysaccharide (LPS), one of the most immuno-stimulatory glycolipids constituting the outer membrane of the Gram-negative bacteria. This family has also been described as a SAP-like MIR-interacting protein family. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PF11938	151	DUF3456: TLR4 regulator and MIR-interacting MSAP;	100.0
KOG3782	189	consensus Predicted membrane protein, contains typ	100.0
KOG4052	190	consensus Uncharacterized conserved protein [Funct	99.95
KOG4260	350	consensus Uncharacterized conserved protein [Funct	99.94
smart00741	76	SapB Saposin (B) Domains. Present in multiple copi	96.39
PF05184	39	SapB_1: Saposin-like type B, region 1; InterPro: I	94.0

>PF11938 DUF3456: TLR4 regulator and MIR-interacting MSAP; InterPro: IPR021852 This family of proteins are functionally uncharacterised

Probab=100.00  E-value=4.5e-39  Score=254.67  Aligned_cols=143  Identities=36%  Similarity=0.594  Sum_probs=126.4

Q ss_pred             CCcchhHHHHHHHHHHHhhcccccccccccc-ccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcce
Q 030030           22 DEKCGACNAVAEELERGLSKEKTRNHLDLRH-RLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDW  100 (184)
Q Consensus        22 ~~kC~aC~alv~El~~~l~kt~~kk~i~~G~-Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~  100 (184)
                      +.+|+||+++|.||+++|++++|++++++|+ |+|++|+++++.++|++||+||+|+||+||++|.+|++++.++++++|
T Consensus         1 ~~~C~~C~~l~~el~~~l~~~~~~~~v~~~~~r~d~~g~~~~~~~~y~~SE~~l~EvlE~vC~~~~~Y~~~~~~~~~~~~   80 (151)
T PF11938_consen    1 DLKCSACRALVEELEHRLAKTDPKKFVDVGGFRLDPDGERKKKKIPYARSELRLVEVLENVCEKMKDYVLHKDKSTGKRV   80 (151)
T ss_pred             CCcchHHHHHHHHHHHHHHHhCCcCceeccccccccccccccccCccccchhHHHHHHHHHccCcccceeeecCCCCceE
Confidence            4799999999999999999999999999998 999999999999999999999999999999999999999998888776


Q ss_pred             EEeeecCc---cch---hh-HHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCC
Q 030030          101 IRVDNWEN---LSI---SK-QEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN  165 (184)
Q Consensus       101 vrv~~~~~---~~~---~~-~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~  165 (184)
                      .+..+..+   ...   ++ ++.++++++|+++|++|||+|||+|++||++.+.+ ++|.+|||++++++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~C~~ilEe~Ed~i~~~~~~~~~~-~~l~~~LC~~~~~~C~  151 (151)
T PF11938_consen   81 YKRMSTTGGTNPELSEKDVKVDPSDENKRLKFYCERILEEYEDEIEEWFFSEQDE-DDLEEWLCSETSKVCC  151 (151)
T ss_pred             EEecCCCcCcccccccccceeecHHHHhHHHHHHHHHHHHhHHHHHHHHHhcCCc-cCHHHHhhhcccccCC
Confidence            55542221   111   22 33478999999999999999999999999999865 7999999999999997

This protein is found in eukaryotes. Proteins in this family are typically between 182 to 356 amino acids in length.

>KOG3782 consensus Predicted membrane protein, contains type II SA sequence [General function prediction only]

Probab=100.00  E-value=6.8e-39  Score=254.11  Aligned_cols=167  Identities=25%  Similarity=0.486  Sum_probs=149.2

Q ss_pred             HhhhccccCCCcchhHHHHHHHHHHHhhcccccccccccc-ccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchh
Q 030030           13 AIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRH-RLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLE   91 (184)
Q Consensus        13 ~~~~~~~~~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~-Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~   91 (184)
                      .+..+..+..++|+||+++|+||+++|++++|+|++++|+ |+||+|+|..++|+|+|||+||+|+||.+|++|++|..+
T Consensus        15 g~~~a~~S~~~~CgaC~alVtelE~~IA~vDPkK~i~vgsFR~~p~G~q~~~kV~yarSE~hLTEl~E~iCd~mk~Y~~~   94 (189)
T KOG3782|consen   15 GAGYAFTSREVKCGACKALVTELEEAIAKVDPKKMIDVGSFRLDPQGNQISKKVRYARSEMHLTELMEKICDKMKDYLKA   94 (189)
T ss_pred             hhhhhhhccccccchHHHHHHHHHHHHHhcCchheeeecceEECCCCCeeeeeeccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4477788888999999999999999999999999999997 999999999999999999999999999999999999998


Q ss_pred             hccCCCc-ceEEeee---cCccc---hhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcC
Q 030030           92 KIDSTRQ-DWIRVDN---WENLS---ISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHC  164 (184)
Q Consensus        92 ~~~~~~k-~~vrv~~---~~~~~---~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C  164 (184)
                      .+++++| .||++..   +++..   -++++ ++.++.|.++|+.+||++++.+.++|.+.... .++.-..|.....+|
T Consensus        95 ~~~stgk~~yv~~~~~~~~~~es~l~~~~~d-~d~n~~l~~~c~evle~~~~~~~~~f~~e~~g-~~~~~~~~~~~~~~~  172 (189)
T KOG3782|consen   95 TYKSTGKFTYVKMIINGQMNPESSLVDFVQD-GDLNKSLGHFCNEVLEDNDEIFVKAFQAEELG-NDLDIKICSEQASYC  172 (189)
T ss_pred             hccCCCceEEEEEeccCCCCCcccccccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccceeeeeccCCcC
Confidence            8888886 5999873   33221   24555 59999999999999999999999999888764 678889999999999


Q ss_pred             CCCCcccccccccccCC
Q 030030          165 NKSSGSQRLEYYSNESY  181 (184)
Q Consensus       165 ~~~~~~~~~~~~~~~~~  181 (184)
                      .+.++.++++++|+|++
T Consensus       173 ~~~~~~~~sd~~d~e~~  189 (189)
T KOG3782|consen  173 DESPVQEESDFDDKEEL  189 (189)
T ss_pred             CCccccccccCCccccC
Confidence            99999999999998864

>KOG4052 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=9.9e-29  Score=196.00  Aligned_cols=132  Identities=27%  Similarity=0.503  Sum_probs=113.7

Q ss_pred             ccCCCcchhHHHHHHHHHHHhhcc-cccccccccc-ccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCC
Q 030030           19 ASIDEKCGACNAVAEELERGLSKE-KTRNHLDLRH-RLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDST   96 (184)
Q Consensus        19 ~~~~~kC~aC~alv~El~~~l~kt-~~kk~i~~G~-Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~   96 (184)
                      ...|.||+||+.++.||+.++.+| +.+.+++.|+ ++|  +.. ++.++|.+||+||.|++|+||+++.+|+.|+.+++
T Consensus        30 vrlpsKCEvCkllatEleA~l~eTGks~eVi~~gy~~ld--~k~-k~~v~Y~rselrl~E~tEniCer~ley~~hker~g  106 (190)
T KOG4052|consen   30 VRLPSKCEVCKLLATELEAKLEETGKSKEVIEHGYTRLD--FKF-KWFVLYQRSELRLAEITENICERFLEYKIHKERTG  106 (190)
T ss_pred             ccccchhHHHHHHHHHHHHHHhhcCCcceeeeeceeeec--cee-eeeeeeehhHhHHHHHHHHHHHHHHHHhhhccCcc
Confidence            367799999999999999999999 7788889897 655  232 35599999999999999999999999999999998


Q ss_pred             Ccce------------------EEee------ecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCch
Q 030030           97 RQDW------------------IRVD------NWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDV  152 (184)
Q Consensus        97 ~k~~------------------vrv~------~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl  152 (184)
                      .-||                  +||.      .||.|       +.+...|+.+|++++|+|||-|++||++++.+ .+|
T Consensus       107 s~rfaraqsqt~~tlk~l~~KGvKvdlgip~elwd~p-------svevt~lk~qce~lleeyed~i~ewyf~hq~e-~~l  178 (190)
T KOG4052|consen  107 SERFARAQSQTIETLKGLVEKGVKVDLGIPFELWDQP-------SVEVTALKQQCESLLEEYEDLIEEWYFNHQSE-EDL  178 (190)
T ss_pred             hhHHHHHhhhHHHHHHHHHHcCceeeeCCchHhhcCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HHH
Confidence            7554                  4443      58877       57788899999999999999999999999874 699


Q ss_pred             hhhcccccc
Q 030030          153 SKVLCEDLS  161 (184)
Q Consensus       153 ~~~LC~~~~  161 (184)
                      +++||..+.
T Consensus       179 ~k~lce~hv  187 (190)
T KOG4052|consen  179 FKQLCERHV  187 (190)
T ss_pred             HHHHHHhcc
Confidence            999998653

>KOG4260 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.94  E-value=1.6e-27  Score=202.71  Aligned_cols=129  Identities=26%  Similarity=0.418  Sum_probs=110.1

Q ss_pred             ChhHHHHHHHHHHh-hhc-cccCCCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHH
Q 030030            1 MAKSVTCLVITLAI-FSV-AASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELL   78 (184)
Q Consensus         1 ~~~~~~~l~~~l~~-~~~-~~~~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~Evl   78 (184)
                      |.|+|++|+++|++ +++ ...++.+|.+|+.||..|..+|.+|.. +++..|+    ++|+++++.+|+.||+||+|||
T Consensus         4 ~~r~L~~L~lll~a~~~pe~~~kp~pCrtC~~LVssFn~GlerT~r-~hfaGGd----TAWEEknL~kYk~SE~RLvEil   78 (350)
T KOG4260|consen    4 PSRILLLLALLLGAPPQPEVTIKPEPCRTCRGLVSSFNEGLERTAR-HHFAGGD----TAWEEKNLSKYKTSETRLVEIL   78 (350)
T ss_pred             hhHHHHHHHHHhcCCCCccCCCCCCCchHHHHHHHHHHHHHHHHhh-hccCCCc----hhhhhhhhhhccccchhHHHHH
Confidence            47888999988855 444 334589999999999999999999984 4444333    4799999999999999999999


Q ss_pred             HHhhhcccccchhhccCCCcceEEeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccc
Q 030030           79 DGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCE  158 (184)
Q Consensus        79 E~vC~~m~~Y~~~~~~~~~k~~vrv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~  158 (184)
                      |+||++..-                                 -.+.|.|++++|.+|+.|++||++.|.+.+||++|||+
T Consensus        79 EglCsks~~---------------------------------~n~DfeCh~lle~hEellE~w~~hkq~e~Pdl~~WlCv  125 (350)
T KOG4260|consen   79 EGLCSKSSL---------------------------------PNMDFECHTLLEKHEELLEEWWYHKQHESPDLFNWLCV  125 (350)
T ss_pred             HHhhhccCC---------------------------------CCCChHHHHHHHHHHHHHHHHHHHhhcCCchHHhHhhh
Confidence            999998421                                 11459999999999999999999999999999999999


Q ss_pred             cccCcCCCC
Q 030030          159 DLSKHCNKS  167 (184)
Q Consensus       159 ~~~~~C~~~  167 (184)
                      ++.++|||.
T Consensus       126 dqLkvCCp~  134 (350)
T KOG4260|consen  126 DQLKVCCPD  134 (350)
T ss_pred             hhheeccCC
Confidence            999999985

>smart00741 SapB Saposin (B) Domains

Probab=96.39  E-value=0.0095  Score=39.88  Aligned_cols=75  Identities=29%  Similarity=0.632  Sum_probs=58.0

Q ss_pred             cchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceEEe
Q 030030           24 KCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRV  103 (184)
Q Consensus        24 kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~vrv  103 (184)
                      .|..|+.++..++..+.+...                          +..+.+.++.+|+.+.                 
T Consensus         2 ~C~~C~~~v~~~~~~~~~~~~--------------------------~~~i~~~~~~~C~~~~-----------------   38 (76)
T smart00741        2 LCELCEDVVKQLENLLKDNKT--------------------------EEEIKKALEKVCKKLP-----------------   38 (76)
T ss_pred             cChHHHHHHHHHHHHHHhchH--------------------------HHHHHHHHHHHHHHcC-----------------
Confidence            599999999999999886431                          2356689999999864                 


Q ss_pred             eecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcC
Q 030030          104 DNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHC  164 (184)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C  164 (184)
                                       ......|..+++.|-+.|...+.+..    + .+.+|... +.|
T Consensus        39 -----------------~~~~~~C~~~v~~~~~~ii~~i~~~~----~-p~~iC~~l-~~C   76 (76)
T smart00741       39 -----------------KSLSDQCKEFVDQYGPEIIDLLEQGL----D-PKDVCQKL-GLC   76 (76)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHHhCC----C-HHHHHHHc-CCC
Confidence                             12578999999999999999997752    2 57788654 444

Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.

>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes

Probab=94.00  E-value=0.12  Score=31.08  Aligned_cols=37  Identities=27%  Similarity=0.631  Sum_probs=30.4

Q ss_pred             CcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcc
Q 030030           23 EKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKM   85 (184)
Q Consensus        23 ~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m   85 (184)
                      ..|.+|+.++..++..|.+.                          .++..+...|+++|+.+
T Consensus         2 ~~C~~C~~~v~~i~~~l~~~--------------------------~t~~~I~~~l~~~C~~l   38 (39)
T PF05184_consen    2 DECDICKFVVKEIEKLLKNN--------------------------KTEEEIKKALEKACNKL   38 (39)
T ss_dssp             HHHHHHHHHHHHHHHHHHST--------------------------CHHHHHHHHHHHHHTTS
T ss_pred             CcchHHHHHHHHHHHHHHcC--------------------------ccHHHHHHHHHHHHhhC
Confidence            36999999999999999642                          24567889999999875

Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
1nkl_A	78	NK-lysin; saposin fold, antibacterial peptide, tum	97.62
2gtg_A	83	Proactivator polypeptide; saposin, sphingolipid ac	97.53
3bqp_A	80	Proactivator polypeptide; saposin, sphingolipid ac	97.43
2js9_A	99	Saposin-like protein family protein 5; caenopore-5	97.37
1of9_A	77	Pore-forming peptide ameobapore A; toxin, saplip,	97.35
1l9l_A	74	Granulysin; saposin fold, membrane-lytic, antimicr	97.26
2qyp_A	91	Proactivator polypeptide; saposin, activator prote	97.13
1n69_A	81	Saposin B; lipid binding protein, glycosphingolipi	96.93
4ddj_A	83	Saposin-A, protein A; saposin fold, sphingolipid a	96.8
3rfi_A	108	Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuber	85.73

>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1

Probab=97.62  E-value=0.00019  Score=49.56  Aligned_cols=77  Identities=21%  Similarity=0.450  Sum_probs=60.8

Q ss_pred             CcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceEE
Q 030030           23 EKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIR  102 (184)
Q Consensus        23 ~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~vr  102 (184)
                      ..|.+|+.+|..++.-+.+-.                          +|..+...|+++|+.+..               
T Consensus         2 ~~C~~C~~iv~~ve~~l~~~~--------------------------t~~~I~~~l~~~C~~lp~---------------   40 (78)
T 1nkl_A            2 YFCESCRKIIQKLEDMVGPQP--------------------------NEDTVTQAASQVCDKLKI---------------   40 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHCSSC--------------------------CHHHHHHHHHHHHHHSCS---------------
T ss_pred             CcchHHHHHHHHHHHHHHcCC--------------------------cHHHHHHHHHHHHhhCch---------------
Confidence            579999999999999886532                          345677999999998642               


Q ss_pred             eeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCCC
Q 030030          103 VDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNK  166 (184)
Q Consensus       103 v~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~~  166 (184)
                                          +...|..+|++|-+.|++++.++..     -+.+|.. .+.|.+
T Consensus        41 --------------------~~~~C~~~V~~y~~~iI~~l~~~~~-----P~~IC~~-l~lC~~   78 (78)
T 1nkl_A           41 --------------------LRGLCKKIMRSFLRRISWDILTGKK-----PQAICVD-IKICKE   78 (78)
T ss_dssp             --------------------THHHHHHHHHHHHHHHHHHHHTTCC-----HHHHHHH-TTCSCC
T ss_pred             --------------------hHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHhc-cCCCCc
Confidence                                5789999999999999999987632     2668864 677753

>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A

Probab=97.53  E-value=0.00024  Score=49.02  Aligned_cols=79  Identities=16%  Similarity=0.516  Sum_probs=62.0

Q ss_pred             CCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceE
Q 030030           22 DEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWI  101 (184)
Q Consensus        22 ~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~v  101 (184)
                      ...|..|+.++..++..|.+-.                          ++..+.+.|+++|+.+..              
T Consensus         4 ~~~C~~C~~~v~~i~~~l~~~~--------------------------t~~~I~~~l~~~C~~lp~--------------   43 (83)
T 2gtg_A            4 DVYCEVCEFLVKEVTKLIDNNK--------------------------TEKEILDAFDKMCSKLPK--------------   43 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTC--------------------------CHHHHHHHHHHHTTSSCH--------------
T ss_pred             CCcChhHHHHHHHHHHHHHcCC--------------------------cHHHHHHHHHHHHHHCCC--------------
Confidence            5689999999999999986521                          345788999999997632              


Q ss_pred             EeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCCC
Q 030030          102 RVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNK  166 (184)
Q Consensus       102 rv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~~  166 (184)
                                          .+...|..+|+.|-+.|.+++.++.     --+.+|. ..+.|.+
T Consensus        44 --------------------~~~~~C~~~V~~y~~~ii~~l~~~~-----~P~~iC~-~l~lC~~   82 (83)
T 2gtg_A           44 --------------------SLSEECQEVVDTYGSSILSILLEEV-----SPELVCS-MLHLCSG   82 (83)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHHHHHHHTTC-----CHHHHHH-HTTSCC-
T ss_pred             --------------------cchhHHHHHHHHHHHHHHHHHHHCC-----CHHHHHH-hcCCCCC
Confidence                                2678999999999999999998652     2356798 5688864

>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A

Probab=97.43  E-value=0.00057  Score=46.40  Aligned_cols=78  Identities=21%  Similarity=0.432  Sum_probs=61.0

Q ss_pred             CCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceE
Q 030030           22 DEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWI  101 (184)
Q Consensus        22 ~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~v  101 (184)
                      +..|.+|+.+|..++..|++-                          .++..+.+.++++|+.+..              
T Consensus         2 ~~~C~~C~~~v~~i~~~l~~~--------------------------~t~~~I~~~l~~~C~~lp~--------------   41 (80)
T 3bqp_A            2 GGFCEVCKKLVGYLDRNLEKN--------------------------STKQEILAALEKGCSFLPD--------------   41 (80)
T ss_dssp             CTTHHHHHHHHHHHHHHSCTT--------------------------CCHHHHHHHHHHHGGGSCG--------------
T ss_pred             cCcchhHHHHHHHHHHHHHcc--------------------------cHHHHHHHHHHHHHHhCCC--------------
Confidence            467999999999999988742                          1345788999999998642              


Q ss_pred             EeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCC
Q 030030          102 RVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN  165 (184)
Q Consensus       102 rv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~  165 (184)
                                          .+...|..+|+.|-..|.+++.++.    + -+.+|. ..+.|.
T Consensus        42 --------------------~~~~~C~~~v~~y~~~ii~~l~~~~----~-P~~iC~-~l~~C~   79 (80)
T 3bqp_A           42 --------------------PYQKQCDQFVAEYEPVLIEILVEVM----D-PSFVCL-KIGACP   79 (80)
T ss_dssp             --------------------GGHHHHHHHHHHHHHHHHHHHTTCC----C-HHHHHH-HTTSSC
T ss_pred             --------------------ccchhhHHHHHHHHHHHHHHHHHCC----C-HHHHHh-hcCCCC
Confidence                                2578999999999999999997642    2 356796 458885

>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A

Probab=97.37  E-value=0.00032  Score=50.92  Aligned_cols=82  Identities=17%  Similarity=0.315  Sum_probs=60.3

Q ss_pred             cccCCCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCC
Q 030030           18 AASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTR   97 (184)
Q Consensus        18 ~~~~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~   97 (184)
                      .......|.+|+.+|..++..+++                            +|..+...||++|+.+..-         
T Consensus        17 ~~~~~~~C~~C~~vV~~ve~~ln~----------------------------t~~~I~~~L~~~C~~lp~~---------   59 (99)
T 2js9_A           17 RGRSALSCQMCELVVKKYEGSADK----------------------------DANVIKKDFDAECKKLFHT---------   59 (99)
T ss_dssp             --CCSSTHHHHHHHHHHHTTTSSC----------------------------CHHHHHHHHHHHHHTGGGG---------
T ss_pred             CCCCCCcchhHHHHHHHHHHHHHh----------------------------hHHHHHHHHHHHHHcCCCc---------
Confidence            445678999999999999887722                            2335678999999986320         


Q ss_pred             cceEEeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcC
Q 030030           98 QDWIRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHC  164 (184)
Q Consensus        98 k~~vrv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C  164 (184)
                                            .-.+...|..+|+.|-+.|++++.++..     -+.+|. ..+.|
T Consensus        60 ----------------------ipf~~~~C~~~V~~y~~~II~~L~~~~~-----P~~VC~-~L~lC   98 (99)
T 2js9_A           60 ----------------------IPFGTRECDHYVNSKVDPIIHELEGGTA-----PKDVCT-KLNEC   98 (99)
T ss_dssp             ----------------------STTHHHHHHTTTTTTHHHHHHHHHHTCC-----TTHHHH-HTTCC
T ss_pred             ----------------------chHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHh-hcCCC
Confidence                                  0015789999999999999999988742     255886 56666

>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4

Probab=97.35  E-value=0.0003  Score=48.42  Aligned_cols=72  Identities=25%  Similarity=0.499  Sum_probs=55.6

Q ss_pred             CCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceE
Q 030030           22 DEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWI  101 (184)
Q Consensus        22 ~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~v  101 (184)
                      +..|.+|+.+|..++.-+.+- .                          |..+...||++|+.+.               
T Consensus         2 ~~~C~~C~~vv~~ve~~l~~n-t--------------------------~~~I~~~l~~~C~~lp---------------   39 (77)
T 1of9_A            2 EILCNLCTGLINTLENLLTTK-G--------------------------ADKVKDYISSLCNKAS---------------   39 (77)
T ss_dssp             CSSHHHHHHHHHHHHHHCSSS-C--------------------------SHHHHHHHHHHHTTCS---------------
T ss_pred             CCcchhHHHHHHHHHHHHHHC-c--------------------------HHHHHHHHHHHHHcCC---------------
Confidence            568999999999999888652 1                          2245688999999862               


Q ss_pred             EeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhcccc
Q 030030          102 RVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCED  159 (184)
Q Consensus       102 rv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~  159 (184)
                                         +.+...|..+|++|...|++++.++..     -+.+|..
T Consensus        40 -------------------~~~~~~C~~~V~~y~~~iI~~l~~~~~-----P~~IC~~   73 (77)
T 1of9_A           40 -------------------GFIATLCTKVLDFGIDKLIQLIEDKVD-----ANAICAK   73 (77)
T ss_dssp             -------------------STTHHHHHHHHHHCHHHHHHHHHHTCC-----HHHHHHH
T ss_pred             -------------------hHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHhh
Confidence                               126789999999999999999988642     2456753

>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1

Probab=97.26  E-value=0.00054  Score=47.14  Aligned_cols=71  Identities=13%  Similarity=0.355  Sum_probs=56.1

Q ss_pred             CcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceEE
Q 030030           23 EKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIR  102 (184)
Q Consensus        23 ~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~vr  102 (184)
                      ..|.+|..+|.+++..| +-                          ++|..+.+.||++|+.+..               
T Consensus         2 ~~C~~C~~~v~~le~~l-~n--------------------------~Te~~I~~~L~~vC~~l~~---------------   39 (74)
T 1l9l_A            2 RDYRTCLTIVQKLKKMV-DK--------------------------PTQRSVSNAATRVCRTGRS---------------   39 (74)
T ss_dssp             HHHHHHHHHHHHHHHHC-SS--------------------------CCHHHHHHHHHHGGGSSCH---------------
T ss_pred             CCChHHHHHHHHHHHHh-cc--------------------------cCHHHHHHHHHHHHHhCCh---------------
Confidence            46999999999999998 32                          2345678999999998742               


Q ss_pred             eeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhcccc
Q 030030          103 VDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCED  159 (184)
Q Consensus       103 v~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~  159 (184)
                                         +++..|..||+.|=..|.+++.++..     -+.+|.+
T Consensus        40 -------------------~~~~~C~~~V~~y~~~Ii~~L~~~~~-----P~~IC~~   72 (74)
T 1l9l_A           40 -------------------RWRDVCRNFMRRYQSRVIQGLVAGET-----AQQICED   72 (74)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHHHHHHTTCC-----HHHHHGG
T ss_pred             -------------------HHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHhh
Confidence                               26889999999999999999987632     2456654

>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A

Probab=97.13  E-value=0.0012  Score=46.41  Aligned_cols=81  Identities=15%  Similarity=0.488  Sum_probs=61.5

Q ss_pred             CCCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcce
Q 030030           21 IDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDW  100 (184)
Q Consensus        21 ~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~  100 (184)
                      .+..|..|+.+|..++..|.+-                          .++..+.+.|+++|+.+..             
T Consensus         4 ~~~~C~~C~~vv~~i~~~l~~n--------------------------~t~~~I~~~l~~~C~~lp~-------------   44 (91)
T 2qyp_A            4 SDVYCEVCEFLVKEVTKLIDNN--------------------------KTEKEILDAFDKMCSKLPK-------------   44 (91)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSH--------------------------HHHHHHHHHHHHHHHTSCS-------------
T ss_pred             CCCcchHHHHHHHHHHHHHhcC--------------------------CcHHHHHHHHHHHHHHCCC-------------
Confidence            3567999999999999988642                          2345788999999998642             


Q ss_pred             EEeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCCCC
Q 030030          101 IRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKS  167 (184)
Q Consensus       101 vrv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~~~  167 (184)
                                           .+...|..+|++|-..|++++.+..    + -+.+|. ..+.|.++
T Consensus        45 ---------------------~~~~~C~~~V~~y~~~ii~~l~~~~----~-P~~iC~-~l~lC~~~   84 (91)
T 2qyp_A           45 ---------------------SLSEECQEVVDTYGSSILSILLEEV----S-PELVCS-MLHLCSGT   84 (91)
T ss_dssp             ---------------------STTTTHHHHHHHHHHHHHHHHHHTC----C-HHHHHH-TTTCC---
T ss_pred             ---------------------CcccchHHHHHHHHHHHHHHHHHcC----C-HHHHHh-hcCCCCCc
Confidence                                 1567999999999999999998753    1 356786 67788754

>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3

Probab=96.93  E-value=0.0026  Score=43.86  Aligned_cols=77  Identities=14%  Similarity=0.433  Sum_probs=59.6

Q ss_pred             CCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhh-HHHHHHHHHhhhcccccchhhccCCCcce
Q 030030           22 DEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSE-LRVVELLDGLCDKMQDYTLEKIDSTRQDW  100 (184)
Q Consensus        22 ~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE-~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~  100 (184)
                      ...|..|..+|..++..|.+-.                          +| ..+.+.|+++|+.+..             
T Consensus         3 ~~~C~~C~~~V~~ve~~l~~n~--------------------------t~~~~I~~~l~~~C~~lp~-------------   43 (81)
T 1n69_A            3 GDVCQDCIQMVTDIQTAVRTNS--------------------------TFVQALVEHVKEECDRLGP-------------   43 (81)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCT--------------------------THHHHHHHHHHHHGGGGCT-------------
T ss_pred             CCcchHHHHHHHHHHHHHHhCC--------------------------cHHHHHHHHHHHHHHHcCc-------------
Confidence            4579999999999999887632                          34 5688999999998742             


Q ss_pred             EEeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCC
Q 030030          101 IRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN  165 (184)
Q Consensus       101 vrv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~  165 (184)
                                           .+...|..+|++|-..|..++.+.      --+.+|. ..+.|.
T Consensus        44 ---------------------~~~~~C~~~V~~y~~~ii~~l~~~------~P~~iC~-~lglC~   80 (81)
T 1n69_A           44 ---------------------GMADICKNYISQYSEIAIQMMMHM------QPKEICA-LVGFCD   80 (81)
T ss_dssp             ---------------------THHHHHHHHHHHHHHHHHHHHTTS------CHHHHHH-HTTSCC
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHh-hcCCCC
Confidence                                 267899999999999999988632      1255797 458885

>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*

Probab=96.80  E-value=0.0026  Score=43.78  Aligned_cols=81  Identities=17%  Similarity=0.357  Sum_probs=60.4

Q ss_pred             CCCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcce
Q 030030           21 IDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDW  100 (184)
Q Consensus        21 ~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~  100 (184)
                      +...|.+|+.+|..++..+.+-                          .+|..+.+.++++|+.+..             
T Consensus         2 ~~~~C~~C~~~v~~~~~~l~~n--------------------------~t~~~I~~~l~~~C~~lp~-------------   42 (83)
T 4ddj_A            2 GSLPCDICKDVVTAAGDMLKDN--------------------------ATEEEILVYLEKTCDWLPK-------------   42 (83)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHST--------------------------THHHHHHHHHHHHHTTSCT-------------
T ss_pred             CCCcchHHHHHHHHHHHHHHcC--------------------------ccHHHHHHHHHHHHHhCCC-------------
Confidence            4567999999999999888652                          2345788999999998642             


Q ss_pred             EEeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCC
Q 030030          101 IRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN  165 (184)
Q Consensus       101 vrv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~  165 (184)
                                          ..+...|..+|+.|=..|.+++.++-    .--+.+|. ..+.|.
T Consensus        43 --------------------~~~~~~C~~~v~~y~~~ii~~l~~~~----~~p~~vC~-~l~lC~   82 (83)
T 4ddj_A           43 --------------------PNMSASCKEIVDSYLPVILDIIKGEM----SRPGEVCS-ALNLCE   82 (83)
T ss_dssp             --------------------THHHHHHHHHHHHHHHHHHHHHHHHH----TCHHHHHH-HTTSCC
T ss_pred             --------------------chhhHHHHHHHHHHHHHHHHHHHHcc----CCHHHHHh-HcCCCC
Confidence                                11478999999999999999997641    01245784 577775

>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}

Probab=85.73  E-value=0.76  Score=33.10  Aligned_cols=39  Identities=26%  Similarity=0.521  Sum_probs=33.0

Q ss_pred             CCCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcc
Q 030030           21 IDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKM   85 (184)
Q Consensus        21 ~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m   85 (184)
                      .+..|.+|+.+|..++..|++-                          ++|..+.+.|+++|+++
T Consensus        69 ~~~~C~~Ce~~V~~ie~~L~~N--------------------------~Te~eI~~~l~k~C~~L  107 (108)
T 3rfi_A           69 EAPLCTACEMAVVWMQNQLKQE--------------------------GTKEKVLEYVNQLCEKI  107 (108)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSH--------------------------HHHHHHHHHHHHHHTTC
T ss_pred             CCCcChhHHHHHHHHHHHHhcC--------------------------chHHHHHHHHHHHHhhC
Confidence            5678999999999999999763                          35668889999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1nkla_	78	NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}	97.24
d1l9la_	74	Granulysin, NKG5 protein {Human (Homo sapiens) [Ta	96.86
d2gtga1	78	Saposin C {Human (Homo sapiens) [TaxId: 9606]}	96.79
d1of9a_	77	Ameobapore A {Entamoeba histolytica [TaxId: 5759]}	96.75
d1n69a_	78	Saposin B {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1qdma1	104	(Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4	86.73

>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: NK-lysin, NKL
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.24  E-value=0.0005  Score=45.21  Aligned_cols=76  Identities=21%  Similarity=0.457  Sum_probs=59.3

Q ss_pred             CcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceEE
Q 030030           23 EKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIR  102 (184)
Q Consensus        23 ~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~vr  102 (184)
                      ..|..|+.++..++..|..-                          .++..+..+++++|+.+..               
T Consensus         2 ~~C~~C~~~v~~~~~~l~~~--------------------------~t~~~I~~~l~~~C~~lp~---------------   40 (78)
T d1nkla_           2 YFCESCRKIIQKLEDMVGPQ--------------------------PNEDTVTQAASQVCDKLKI---------------   40 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHCSS--------------------------CCHHHHHHHHHHHHHHSCS---------------
T ss_pred             CccHhhHHHHHHHHHHHcCC--------------------------ccHHHHHHHHHHHHhcCCc---------------
Confidence            46999999999999988642                          2345788999999998642               


Q ss_pred             eeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCC
Q 030030          103 VDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN  165 (184)
Q Consensus       103 v~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~  165 (184)
                                          +...|..+|++|-+.|.+++.+..    + -..+|.. .+.|.
T Consensus        41 --------------------~~~~C~~~v~~y~~~ii~~l~~~~----~-p~~iC~~-l~lC~   77 (78)
T d1nkla_          41 --------------------LRGLCKKIMRSFLRRISWDILTGK----K-PQAICVD-IKICK   77 (78)
T ss_dssp             --------------------THHHHHHHHHHHHHHHHHHHHTTC----C-HHHHHHH-TTCSC
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHhCC----C-HHHHHhh-hCcCC
Confidence                                467899999999999999997752    2 3568876 56664

>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Granulysin, NKG5 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0013  Score=43.09  Aligned_cols=71  Identities=14%  Similarity=0.389  Sum_probs=53.4

Q ss_pred             CcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceEE
Q 030030           23 EKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIR  102 (184)
Q Consensus        23 ~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~vr  102 (184)
                      ..|..|+.++..++. +-. ++                         +|..+.+.|+++|+.+..               
T Consensus         2 ~~c~tC~~vv~~ve~-l~~-n~-------------------------t~~~I~~~l~~~C~~lp~---------------   39 (74)
T d1l9la_           2 RDYRTCLTIVQKLKK-MVD-KP-------------------------TQRSVSNAATRVCRTGRS---------------   39 (74)
T ss_dssp             HHHHHHHHHHHHHHH-HCS-SC-------------------------CHHHHHHHHHHGGGSSCH---------------
T ss_pred             CccHHHHHHHHHHHH-HhC-CC-------------------------CHHHHHHHHHhHHHHCCH---------------
Confidence            369999999999985 433 21                         234577999999998632               


Q ss_pred             eeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhcccc
Q 030030          103 VDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCED  159 (184)
Q Consensus       103 v~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~  159 (184)
                                         .+...|..+|+.|-..|++++.++..     -..+|.+
T Consensus        40 -------------------~~~~~C~~lv~~Y~~~ii~~l~~~~~-----P~~IC~~   72 (74)
T d1l9la_          40 -------------------RWRDVCRNFMRRYQSRVIQGLVAGET-----AQQICED   72 (74)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHHHHHHTTCC-----HHHHHGG
T ss_pred             -------------------HHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHh
Confidence                               25789999999999999999987632     2456654

>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Saposin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0016  Score=42.43  Aligned_cols=77  Identities=16%  Similarity=0.515  Sum_probs=58.4

Q ss_pred             CCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceE
Q 030030           22 DEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWI  101 (184)
Q Consensus        22 ~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~v  101 (184)
                      +..|..|+.++..++..|+.-                          .++..+.+.++++|+.+..              
T Consensus         1 di~C~~C~~~v~~~~~~l~~~--------------------------~t~~~I~~~l~~~C~~lp~--------------   40 (78)
T d2gtga1           1 DVYCEVCEFLVKEVTKLIDNN--------------------------KTEKEILDAFDKMCSKLPK--------------   40 (78)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHHTTSSCH--------------
T ss_pred             CCccHHHHHHHHHHHHHHhCC--------------------------chHHHHHHHHHHHHHhCCc--------------
Confidence            357999999999999988652                          2345788999999997631              


Q ss_pred             EeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcC
Q 030030          102 RVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHC  164 (184)
Q Consensus       102 rv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C  164 (184)
                                          .+...|..+|+.|=..|+.++.+.-    + -+.+|. ..+.|
T Consensus        41 --------------------~~~~~C~~~v~~y~~~ii~~l~~~~----~-p~~iC~-~l~lC   77 (78)
T d2gtga1          41 --------------------SLSEECQEVVDTYGSSILSILLEEV----S-PELVCS-MLHLC   77 (78)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHHHHHHHTTC----C-HHHHHH-HTTSC
T ss_pred             --------------------chhhhhHHHHHHHHHHHHHHHHhCC----C-HHHHHH-HcCCc
Confidence                                1578999999999999999997742    2 346776 34454

>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Ameobapore A
domain: Ameobapore A
species: Entamoeba histolytica [TaxId: 5759]

Probab=96.75  E-value=0.0016  Score=42.73  Aligned_cols=64  Identities=27%  Similarity=0.488  Sum_probs=49.5

Q ss_pred             CCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceE
Q 030030           22 DEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWI  101 (184)
Q Consensus        22 ~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~v  101 (184)
                      +..|..|+.++..++.-+ + ++                         ++..+.+.|+++|+.+..              
T Consensus         2 ~~~C~~C~~~v~~~~~l~-~-~~-------------------------t~~~I~~~l~~~C~~lp~--------------   40 (77)
T d1of9a_           2 EILCNLCTGLINTLENLL-T-TK-------------------------GADKVKDYISSLCNKASG--------------   40 (77)
T ss_dssp             CSSHHHHHHHHHHHHHHC-S-SS-------------------------CSHHHHHHHHHHHTTCSS--------------
T ss_pred             CcchHHHHHHHHHHHHHH-c-CC-------------------------cHHHHHHHHHHHHHHCCh--------------
Confidence            468999999999997543 2 21                         122577999999998631              


Q ss_pred             EeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCC
Q 030030          102 RVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGS  146 (184)
Q Consensus       102 rv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~  146 (184)
                                          .+...|..+|+.|-..|.+++.+..
T Consensus        41 --------------------~~~~~C~~~v~~y~~~ii~~l~~~~   65 (77)
T d1of9a_          41 --------------------FIATLCTKVLDFGIDKLIQLIEDKV   65 (77)
T ss_dssp             --------------------TTHHHHHHHHHHCHHHHHHHHHHTC
T ss_pred             --------------------HHHHHhHHHHHHHHHHHHHHHHHcC
Confidence                                2678999999999999999998763

>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Saposin B
domain: Saposin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.005  Score=40.46  Aligned_cols=75  Identities=16%  Similarity=0.442  Sum_probs=55.1

Q ss_pred             cchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceEEe
Q 030030           24 KCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRV  103 (184)
Q Consensus        24 kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~vrv  103 (184)
                      -|..|+.++..++..|...+.                         -|-.+..+++++|+.+.                 
T Consensus         3 ~C~~C~~~v~~v~~~l~~n~t-------------------------~~~~I~~~l~~~C~~lp-----------------   40 (78)
T d1n69a_           3 VCQDCIQMVTDIQTAVRTNST-------------------------FVQALVEHVKEECDRLG-----------------   40 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-------------------------HHHHHHHHHHHHGGGGC-----------------
T ss_pred             chHHHHHHHHHHHHHHhcCcc-------------------------HHHHHHHHHHHHHHhCC-----------------
Confidence            599999999999999875321                         12356689999999863                 


Q ss_pred             eecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcC
Q 030030          104 DNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHC  164 (184)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C  164 (184)
                                       ..+...|..+|+.|-..|..++.+ .    + -+.+|. ..+.|
T Consensus        41 -----------------~~~~~~C~~~V~~y~~~ii~~l~~-~----~-P~~iC~-~l~lC   77 (78)
T d1n69a_          41 -----------------PGMADICKNYISQYSEIAIQMMMH-M----Q-PKEICA-LVGFC   77 (78)
T ss_dssp             -----------------TTHHHHHHHHHHHHHHHHHHHHTT-S----C-HHHHHH-HTTSC
T ss_pred             -----------------hHHHHHhHHHHHHHHHHHHHHHHc-C----C-HHHHHh-HcCCC
Confidence                             126789999999999999998842 1    2 246784 34444

>d1qdma1 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Swaposin
domain: (Pro)phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=86.73  E-value=0.32  Score=32.57  Aligned_cols=39  Identities=18%  Similarity=0.534  Sum_probs=31.5

Q ss_pred             CCCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcc
Q 030030           21 IDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKM   85 (184)
Q Consensus        21 ~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m   85 (184)
                      .+..|..|..++.+++..|..-                          .+|..+...|+++|+.+
T Consensus        65 ~~~~C~~C~~~v~~v~~~l~~n--------------------------~Te~eI~~~l~~vC~~L  103 (104)
T d1qdma1          65 ADPMCSACEMAVVWMQNQLAQN--------------------------KTQDLILDYVNQLCNRL  103 (104)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHHTTCB
T ss_pred             CCCchhhHHHHHHHHHHHHHcc--------------------------ccHHHHHHHHHHHHhhC
Confidence            3356999999999999999762                          23557889999999975