Citrus Sinensis ID: 030038

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MPGVVSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFDLDSPLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHccccccccccHHHHHHHHHHccccEEEEEEccccccccccccccccccccEEccccccccccccEEEEEEccEEEEEEcccccccccccccEEEEEEcccccEEccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccEcccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHccHHHHHHHHHHHHHHccHHHHHHHHHccccccEEEEEEEccccccEEEEEEccccccEEEccccccccccccEEEEEccEEEEEEcccccccccccccEEEEEcccccccEEEEcc
Coil and Loop (DISEMBL)
mpgvvsgkkriteanMCFSTLTEldklthsksnplltsqvafdldspllpglpddVAKCILAlvprsnfpamgtVCKKWRSFIRSKEFITVRKLLGLLEEWLCIltmdpegkqsQWEVLDCFgnrhrllplmpgpvkvGFGVVVINGKLVVMAGYSvidgtasasadvyqydsclnrfgsvafy
Flexible Loop (DISEMBL)
mpgvvsgkkriteanmCFSTLTELDKLTHSKSNPLLTSQVAFDLDSPLLPGLPDDVAKCILALvprsnfpamgtVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY
Low Complexity Region (SEG)
MPGVVSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFdldspllpglpddVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKllglleewlcilTMDPEGKQSQWEVLDCFGNRHRLLPLMPgpvkvgfgvvvingKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY
Disordered region (IsUnstruct)
*************ANMCFSTLTELDKL******PLLTSQVAFDLDSPLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA**
Disordered Region (DISOPRED)
**************************************************GLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY
Disordered Region (DISEMBL)
MPGVVSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFDLDSPLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY
Disordered Region (DISPRO)
********KRITEANMC*****************************PLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGVVSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFDLDSPLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q9CAG8	376	F-box/kelch-repeat protei	yes	no	0.913	0.446	0.561	1e-51
Q9FZJ3	346	Putative F-box/kelch-repe	no	no	0.744	0.395	0.458	2e-31
Q93W93	434	F-box/kelch-repeat protei	no	no	0.826	0.350	0.316	1e-14
Q9M1W7	352	F-box/kelch-repeat protei	no	no	0.668	0.349	0.372	4e-11
Q9M2C9	358	F-box/kelch-repeat protei	no	no	0.706	0.363	0.313	7e-11
Q9LM55	475	F-box/kelch-repeat protei	no	no	0.461	0.178	0.395	4e-10
Q9C6Z0	398	F-box/kelch-repeat protei	no	no	0.505	0.233	0.372	2e-08
Q9FKJ0	393	F-box/kelch-repeat protei	no	no	0.440	0.206	0.395	3e-08
Q0V7S6	442	F-box/kelch-repeat protei	no	no	0.711	0.296	0.338	4e-06
O82373	383	F-box/kelch-repeat protei	no	no	0.641	0.308	0.307	5e-06

>sp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1

 Score =  202 bits (513), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/180 (56%), Positives = 131/180 (72%), Gaps = 12/180 (6%)

Query: 4   VVSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFD-LDSPLLPGLPDDVAKCILA 62
            +SGKKRI    MCFS           K N  L S+++ + +D PL+PGLPDDVAK  LA
Sbjct: 5   ALSGKKRIVNHGMCFS-----------KGNLDLGSRLSENFMDDPLIPGLPDDVAKQCLA 53

Query: 63  LVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLDCF 122
           LVPR+ FP+MG+VCKKWR  ++SKEFITVR+L G+LEEWL +LTM+  GK ++WEV+DC 
Sbjct: 54  LVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTMNAGGKDNRWEVMDCL 113

Query: 123 GNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA 182
           G +   LP MPGP K GF VVV++GKL+V+AG  +I+G+  ASADVYQYD+CLN +  +A
Sbjct: 114 GQKLSSLPPMPGPAKTGFKVVVVDGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLA 173

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZJ3|FBK16_ARATH Putative F-box/kelch-repeat protein At1g27420 OS=Arabidopsis thaliana GN=At1g27420 PE=4 SV=2

 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 7/144 (4%)

Query: 46  SPLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCIL 105
           SP++PGL DDVA+  ++ +PRS+F     VC++WRSF+RS+ F  VRKL G +EE+LC+L
Sbjct: 8   SPIIPGLTDDVAELCVSKIPRSSFQITSQVCRRWRSFLRSQHFAAVRKLTGTVEEFLCVL 67

Query: 106 TMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVIN-GKLVVMAGYSVIDG---- 160
                G+   WEV D  GN+   +P +PGP+K GFGV V++ GK+V   GY+ ++G    
Sbjct: 68  MESECGRDVYWEVFDASGNKLGQIPPVPGPLKRGFGVAVLDGGKIVFFGGYTEVEGSGIN 127

Query: 161 --TASASADVYQYDSCLNRFGSVA 182
             T SASADVY++D   N +  +A
Sbjct: 128 STTVSASADVYEFDPANNSWRKLA 151

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W93|FBK22_ARATH F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 9/161 (5%)

Query: 4   VVSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFDLDSPLLPGLPDDVAKCILAL 63
           VV  +K +  + +C     +++   H + N   + +    +  PLLPGLPDD+A   L  
Sbjct: 39  VVEARKFVPGSKLCIQP--DINPNAHRRKN---SKRERTRIQPPLLPGLPDDLAVACLIR 93

Query: 64  VPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLDCFG 123
           VPR+    +  VCK+W        F + RKLLG+ EEW+ +   D +GK S W   D   
Sbjct: 94  VPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKRDRDGKIS-WNTFDPIS 152

Query: 124 NRHRLLPLMPGPVK--VGFGVVVING-KLVVMAGYSVIDGT 161
              + LP +P      VGFG  V++G  L +  G   + G+
Sbjct: 153 QLWQPLPPVPREYSEAVGFGCAVLSGCHLYLFGGKDPLRGS 193

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1W7|SKI30_ARATH F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2

 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 66/137 (48%), Gaps = 14/137 (10%)

Query: 46  SPLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCIL 105
           S LL G+P+ VA   LA VP    P +  V + WR+ IRS E   VRK L   E  LC+ 
Sbjct: 9   SGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVC 68

Query: 106 TMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVK--VGFGVVVINGKLVVMAGYSVI----- 158
             DPE   + W+V     +R   LPL+P  ++    FG V   G L V+ G S       
Sbjct: 69  AFDPE---NIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVT 125

Query: 159 ---DGTASASADVYQYD 172
              DGT  A+  V+ YD
Sbjct: 126 GDHDGTF-ATDQVWSYD 141

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2C9|SKIP4_ARATH F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana GN=SKIP4 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 48  LLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTM 107
           L+ G+PDD++K  LA VPR    AM  V ++WR F+ S E    R    L E W+  L  
Sbjct: 21  LISGVPDDISKSCLARVPREYHMAMKCVSRRWRDFVCSDEMCDYRNEFNLAESWIYALCR 80

Query: 108 DPEGKQSQWEVLDCFGNRH---RLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASA 164
           D  G      +L+ F +R    R+      P++ G G  V+  +L V+ G   ++    A
Sbjct: 81  DISGGVFL-HMLNPFSSRRSWKRINDYPYIPMREGMGFAVLGKRLFVLGGCGWLE---DA 136

Query: 165 SADVYQYDSCLNRFGSV 181
           + ++Y YD+ +N +  V
Sbjct: 137 TDEIYCYDAAMNTWFDV 153

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LM55|FBK8_ARATH F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 48  LLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTM 107
           L+P LPD+++  ILA +PR  + ++  V ++WRS + + E  ++RK LG  EEWL +LT 
Sbjct: 43  LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTK 102

Query: 108 DPEGKQSQWEVLDCFGNRHRLLPLMP 133
             E K   W  LD    + + LP MP
Sbjct: 103 GHEDKL-LWYALDPVSTKWQRLPPMP 127

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6Z0|FBK17_ARATH F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 46  SPLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKE-FITVRKLLGLLEEWLCI 104
            PL+PGLPDDVA   L  VP  +  +  +VCK+W     +KE F   RK  G  + WL +
Sbjct: 51  EPLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFV 110

Query: 105 LTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKV 138
           +       + QW+VLD        +P MP   KV
Sbjct: 111 VGFSRCTGKIQWKVLDLRNLTWHEIPAMPCRDKV 144

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKJ0|FK132_ARATH F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana GN=At5g60570 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 48  LLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTM 107
           +LPGL DDVA   LA VPRS++P++  V KK+   I S     +RK LG++ E+L  +  
Sbjct: 49  VLPGLIDDVALNCLAWVPRSDYPSLSCVNKKYNKLINSGHLFALRKELGIV-EYLVFMVC 107

Query: 108 DPEGKQSQWEVLDCFGNRHRLLPLMP 133
           DP G    W +      +  +LP MP
Sbjct: 108 DPRG----WLMFSPMKKKWMVLPKMP 129

Arabidopsis thaliana (taxid: 3702)

>sp|Q0V7S6|FK125_ARATH F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana GN=OR23 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 63/142 (44%), Gaps = 11/142 (7%)

Query: 48  LLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKL-----LGLLEEWL 102
           L+PGL +DV + IL+ VP  +   + + CK W +F+ SK  I++R          L   L
Sbjct: 38  LIPGLSNDVGRLILSFVPYPHISRIKSTCKSWYAFLSSKTLISLRHSRDNSNTNNLSHLL 97

Query: 103 CILTMDPEGKQSQWEVLDCFGNRHRLLPLMP-GPVKVGFG--VVVINGKLVVMAGYSVID 159
           CI   DP    S   + D      R LPLMP  P   G    V V  G  V + G S  D
Sbjct: 98  CIFPQDPS--ISPPFLFDPVTLSWRSLPLMPCNPHVYGLCNFVAVALGPYVYVLGGSAFD 155

Query: 160 GTASASADVYQYDSCLNRFGSV 181
            T S   DV    S + R+  V
Sbjct: 156 -TRSYPLDVPLPTSSVFRYSFV 176

Arabidopsis thaliana (taxid: 3702)

>sp|O82373|FK128_ARATH F-box/kelch-repeat protein At2g29830 OS=Arabidopsis thaliana GN=At2g29830 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 9/127 (7%)

Query: 47  PLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILT 106
           P+L  LP+++   I+AL+PR ++P++  V + +R  I S+E    R  LG  E  L  L 
Sbjct: 28  PILLQLPEELIASIVALIPRCHYPSLSLVSRAFRHLITSQELYVARSNLGFTEPVLYALI 87

Query: 107 MDPEGKQSQWEVLDCFG-----NRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGT 161
                 +  W  L         +R R LP    P+  G  VV I+ K+ VM G    +  
Sbjct: 88  GFQAYTRPSWFFLRRSNFPLQLHRIRSLP----PMLSGAAVVTIDYKMYVMGGCIGYNHP 143

Query: 162 ASASADV 168
           AS++  V
Sbjct: 144 ASSNVIV 150

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
225425476	385	PREDICTED: F-box/kelch-repeat protein At	0.989	0.472	0.725	5e-70
224135705	381	predicted protein [Populus trichocarpa]	0.967	0.467	0.708	1e-68
255547748	391	Protein AFR, putative [Ricinus communis]	0.983	0.462	0.692	1e-64
356525146	388	PREDICTED: F-box/kelch-repeat protein At	0.989	0.469	0.643	3e-61
356540156	385	PREDICTED: F-box/kelch-repeat protein At	0.989	0.472	0.648	2e-60
224100025	371	f-box family protein [Populus trichocarp	0.896	0.444	0.654	4e-58
224107619	385	f-box family protein [Populus trichocarp	0.983	0.470	0.633	2e-57
357463045	372	F-box family protein [Medicago truncatul	0.907	0.448	0.644	2e-54
147773577	371	hypothetical protein VITISV_018334 [Viti	0.913	0.452	0.620	2e-54
449452895	382	PREDICTED: F-box/kelch-repeat protein At	0.972	0.468	0.593	4e-51

>gi|225425476|ref|XP_002272745.1| PREDICTED: F-box/kelch-repeat protein At1g67480 [Vitis vinifera] gi|297738424|emb|CBI27625.3| unnamed protein product [Vitis vinifera]

 Score =  268 bits (686), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 132/182 (72%), Positives = 148/182 (81%)

Query: 1   MPGVVSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFDLDSPLLPGLPDDVAKCI 60
           MPG+V+GKKR T++NMC S   + D LT SKSNP LTSQ A D   P+LPGLPDDVAK  
Sbjct: 1   MPGIVAGKKRFTQSNMCLSNSVQQDTLTLSKSNPCLTSQFADDSYGPILPGLPDDVAKYC 60

Query: 61  LALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLD 120
           LALVPRSNFPAMG V KKWRSFIRSKEFITVRKL G+LEEWL +LTMD EGK S WEVLD
Sbjct: 61  LALVPRSNFPAMGGVSKKWRSFIRSKEFITVRKLAGMLEEWLYVLTMDAEGKGSHWEVLD 120

Query: 121 CFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGS 180
           C G++H+LLP MPGPVK GF VVV+NGKL+VMAG SV+  T SASADVYQYDSCLN +  
Sbjct: 121 CLGHKHQLLPPMPGPVKTGFEVVVLNGKLLVMAGCSVVGRTGSASADVYQYDSCLNSWSK 180

Query: 181 VA 182
           +A
Sbjct: 181 LA 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135705|ref|XP_002327284.1| predicted protein [Populus trichocarpa] gi|222835654|gb|EEE74089.1| predicted protein [Populus trichocarpa]

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 129/182 (70%), Positives = 148/182 (81%), Gaps = 4/182 (2%)

Query: 1   MPGVVSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFDLDSPLLPGLPDDVAKCI 60
           M G+VSGKKR TEANM FSTL   D     KS P L SQ+  D+DSP+LPGLPDDVAK  
Sbjct: 1   MLGIVSGKKRFTEANMTFSTLITQD----FKSKPRLASQIPNDIDSPILPGLPDDVAKYC 56

Query: 61  LALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLD 120
           LALVPRS+FP MG+VCKKWRSF++SKE IT+RKL GLLEEWL +LTMD E K+S WEV D
Sbjct: 57  LALVPRSHFPTMGSVCKKWRSFLKSKELITIRKLAGLLEEWLYVLTMDSEAKESHWEVFD 116

Query: 121 CFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGS 180
           C G++H+LLP MPGPVK  FGVVV+NGKL+VMAGYSVIDGT SASADVY+YDSCLN +  
Sbjct: 117 CLGHKHQLLPPMPGPVKAEFGVVVLNGKLLVMAGYSVIDGTGSASADVYEYDSCLNSWRK 176

Query: 181 VA 182
           +A
Sbjct: 177 LA 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547748|ref|XP_002514931.1| Protein AFR, putative [Ricinus communis] gi|223545982|gb|EEF47485.1| Protein AFR, putative [Ricinus communis]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 126/182 (69%), Positives = 145/182 (79%), Gaps = 1/182 (0%)

Query: 1   MPGVVSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFDLDSPLLPGLPDDVAKCI 60
           MPG V GKKR+T  +M F T     KLT+SK+N  L S+VA D+DSP+LPGLPDDVAK  
Sbjct: 8   MPGFVGGKKRLTNMDMSFLTSLTQAKLTYSKNNLQLPSRVADDIDSPILPGLPDDVAKYC 67

Query: 61  LALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLD 120
           LALVPR  FP+MG VCKKWRSF++SKEF+ VRKL GLLEE L +LT+D EG QSQWEVLD
Sbjct: 68  LALVPRPYFPSMGAVCKKWRSFMKSKEFLVVRKLAGLLEELLYVLTVDSEGTQSQWEVLD 127

Query: 121 CFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGS 180
           C G R R LPLMPG VK GFGVV +NGKL+VMAGYSVIDGT SASADVY+YDSCLN +  
Sbjct: 128 CLGQR-RQLPLMPGSVKAGFGVVALNGKLLVMAGYSVIDGTGSASADVYEYDSCLNSWSK 186

Query: 181 VA 182
           ++
Sbjct: 187 LS 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525146|ref|XP_003531188.1| PREDICTED: F-box/kelch-repeat protein At1g67480-like [Glycine max]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 119/185 (64%), Positives = 138/185 (74%), Gaps = 3/185 (1%)

Query: 1   MPGVVSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFDLD---SPLLPGLPDDVA 57
           MP  V+ KK   E NMCF+ L   D+ T +K+N  + S+   D D   SP+LPGLPDDV+
Sbjct: 1   MPSFVAEKKIFVEPNMCFTNLANHDRPTLTKNNHYVRSEALDDDDDGTSPILPGLPDDVS 60

Query: 58  KCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWE 117
           K  LALVPRSNFPAMG VCK+WR FIRSKEFITVRKL G+ EEWL ILT   EGK S WE
Sbjct: 61  KHCLALVPRSNFPAMGGVCKRWRGFIRSKEFITVRKLAGMHEEWLYILTAGSEGKGSHWE 120

Query: 118 VLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNR 177
           V+DC G+  R LP MPGP K GFGVVV+NGKL+VMAGYS IDGTAS SA+VYQYDSCLN 
Sbjct: 121 VMDCLGHNRRSLPPMPGPAKAGFGVVVLNGKLLVMAGYSSIDGTASVSAEVYQYDSCLNS 180

Query: 178 FGSVA 182
           +  ++
Sbjct: 181 WSRLS 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540156|ref|XP_003538556.1| PREDICTED: F-box/kelch-repeat protein At1g67480-like [Glycine max]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 118/182 (64%), Positives = 138/182 (75%)

Query: 1   MPGVVSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFDLDSPLLPGLPDDVAKCI 60
           MPG   GKKR  + NMCF+ L   DK T S++N  L  +      SP+LPGLPDDVA+  
Sbjct: 1   MPGFTVGKKRFIQPNMCFTNLINQDKSTLSQNNHCLFPEALNKDYSPILPGLPDDVAEYC 60

Query: 61  LALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLD 120
           LALVPRSNFPAMG VCK WRSFI+SKEF TVRKL G+LEEWL  LT D EGK+S WEV+D
Sbjct: 61  LALVPRSNFPAMGGVCKIWRSFIQSKEFATVRKLAGMLEEWLYFLTTDCEGKESYWEVMD 120

Query: 121 CFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGS 180
           C G++ R LP MPGP K GF VVV+NGKL+VMAGYSVI+GTA ASA+VYQYDSCLN +  
Sbjct: 121 CLGHKCRSLPPMPGPGKAGFQVVVLNGKLLVMAGYSVIEGTAFASAEVYQYDSCLNSWSR 180

Query: 181 VA 182
           ++
Sbjct: 181 LS 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100025|ref|XP_002311715.1| f-box family protein [Populus trichocarpa] gi|222851535|gb|EEE89082.1| f-box family protein [Populus trichocarpa]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 108/165 (65%), Positives = 135/165 (81%)

Query: 18  FSTLTELDKLTHSKSNPLLTSQVAFDLDSPLLPGLPDDVAKCILALVPRSNFPAMGTVCK 77
           F+ +T+ + L HSKSNP++ S+VA D+D  ++PGLPDDVAK  LALVPR   PAMG VCK
Sbjct: 4   FTLITQDNPLVHSKSNPVVDSRVAHDIDVLIVPGLPDDVAKYCLALVPRRYLPAMGAVCK 63

Query: 78  KWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVK 137
           KWRSF++S+EFITVRKL GLLEEWL +LTMD EGK+S W VLD  G++ +LLP MPGP K
Sbjct: 64  KWRSFLKSQEFITVRKLAGLLEEWLYVLTMDSEGKESHWVVLDRLGHKRQLLPPMPGPTK 123

Query: 138 VGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA 182
            GFGVVV+NGKL+VMAG+S+IDGT +ASADVY+YD CLN +  ++
Sbjct: 124 AGFGVVVLNGKLLVMAGHSLIDGTGTASADVYEYDCCLNSWSKLS 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107619|ref|XP_002314539.1| f-box family protein [Populus trichocarpa] gi|222863579|gb|EEF00710.1| f-box family protein [Populus trichocarpa]

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/183 (63%), Positives = 139/183 (75%), Gaps = 2/183 (1%)

Query: 1   MPGVVSGKKRITEANMCFSTL-TELDKLTHSKSNPLLTSQVAFDLDSPLLPGLPDDVAKC 59
           M G  S KKR  + +M F TL T  +   +SKSN LL S+ + D+DS +LPGLPDDVAK 
Sbjct: 1   MSGFTS-KKRFLDTSMSFCTLITHENHQVYSKSNLLLASRGSDDIDSSILPGLPDDVAKY 59

Query: 60  ILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVL 119
            LALVPR   PAMG VCKKWRSF+++KEFITVRKL GLLEEWL +LTMD EGK+S W VL
Sbjct: 60  CLALVPRRYLPAMGAVCKKWRSFLKTKEFITVRKLAGLLEEWLFVLTMDSEGKESHWVVL 119

Query: 120 DCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFG 179
           DC G + +LLP MPG  K GFGVVV+NGKL+VMAGYSVI+GT +ASADVY+YD  LN + 
Sbjct: 120 DCLGLKRQLLPPMPGSTKAGFGVVVLNGKLLVMAGYSVIEGTGTASADVYEYDCYLNSWS 179

Query: 180 SVA 182
            ++
Sbjct: 180 KLS 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463045|ref|XP_003601804.1| F-box family protein [Medicago truncatula] gi|355490852|gb|AES72055.1| F-box family protein [Medicago truncatula]

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 126/169 (74%), Gaps = 2/169 (1%)

Query: 16  MCFSTLTELDKLTH--SKSNPLLTSQVAFDLDSPLLPGLPDDVAKCILALVPRSNFPAMG 73
           MCF+ L   DK TH  SKSN  LT +     DSP+LPGLPDDVAK  LALVPRSNFPAMG
Sbjct: 1   MCFTNLVNQDKTTHTRSKSNHCLTIEALDKDDSPILPGLPDDVAKYCLALVPRSNFPAMG 60

Query: 74  TVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMP 133
            V KKWR FIRSKEF+ VRKL GLLEEWL  LT+D EG++S WEV+D  G + R LP MP
Sbjct: 61  GVSKKWRLFIRSKEFVMVRKLAGLLEEWLYCLTLDSEGRESHWEVMDSLGRKCRSLPPMP 120

Query: 134 GPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA 182
           GP K  FGVVV+NGKL++MAGYS I+GT  AS +VYQYDS LN +  ++
Sbjct: 121 GPAKASFGVVVLNGKLLIMAGYSAIEGTVVASDEVYQYDSYLNSWSRLS 169

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773577|emb|CAN74339.1| hypothetical protein VITISV_018334 [Vitis vinifera]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 113/182 (62%), Positives = 131/182 (71%), Gaps = 14/182 (7%)

Query: 1   MPGVVSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFDLDSPLLPGLPDDVAKCI 60
           MPG+V+GKKR T++NMC S   + D LT SKSNP LTSQ A D   P+LPGLPD   K  
Sbjct: 1   MPGIVAGKKRFTQSNMCLSNSVQQDTLTLSKSNPCLTSQFADDSYGPILPGLPDGCGK-- 58

Query: 61  LALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLD 120
             ++P          C    SFIRSKEFITVRKL G+LEEWL +LTMD EGK S WEVLD
Sbjct: 59  --ILP----------CTCSSSFIRSKEFITVRKLAGMLEEWLYVLTMDAEGKGSHWEVLD 106

Query: 121 CFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGS 180
           C G++H+LLP MPGPVK GF VVV+NGKL+VMAG SV+  T SASADVYQYDSCLN +  
Sbjct: 107 CLGHKHQLLPPMPGPVKTGFEVVVLNGKLLVMAGCSVVGRTGSASADVYQYDSCLNSWSK 166

Query: 181 VA 182
           +A
Sbjct: 167 LA 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452895|ref|XP_004144194.1| PREDICTED: F-box/kelch-repeat protein At1g67480-like [Cucumis sativus] gi|449489229|ref|XP_004158253.1| PREDICTED: F-box/kelch-repeat protein At1g67480-like [Cucumis sativus]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 108/182 (59%), Positives = 128/182 (70%), Gaps = 3/182 (1%)

Query: 1   MPGVVSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFDLDSPLLPGLPDDVAKCI 60
           MPG +SGKKR+TE  MC     + + +  SKS+    SQ  FD  S LLPGLPDDVAK  
Sbjct: 1   MPGFISGKKRLTEPKMCIINTVKQNSICLSKSDTGFHSQ--FDHVS-LLPGLPDDVAKLC 57

Query: 61  LALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLD 120
           LALVPRS+ P+M  V K WRSFI+ KEFIT RKL G +EEWL  LTMD   K+  WEV D
Sbjct: 58  LALVPRSSHPSMAGVSKNWRSFIKGKEFITERKLAGAVEEWLYFLTMDTVRKECHWEVFD 117

Query: 121 CFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGS 180
               + R+LP MPG VK GF VVV+NGKL+V+AGYS+ DGT S S+DVYQYDSCLNR+  
Sbjct: 118 GVERKFRVLPPMPGAVKAGFEVVVLNGKLLVIAGYSIADGTDSVSSDVYQYDSCLNRWSK 177

Query: 181 VA 182
           +A
Sbjct: 178 LA 179

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2008773	376	AT1G67480 "AT1G67480" [Arabido	0.913	0.446	0.415	6.4e-28
TAIR|locus:2015979	346	AT1G27420 "AT1G27420" [Arabido	0.684	0.364	0.333	1.5e-13

TAIR|locus:2008773 AT1G67480 "AT1G67480" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 74/178 (41%), Positives = 97/178 (54%)

Query:     5 VSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFXXXXXXXXXXXXXVAKCILALV 64
             +SGKKRI    MCFS    LD  +    N +    +               VAK  LALV
Sbjct:     6 LSGKKRIVNHGMCFSK-GNLDLGSRLSENFMDDPLIP---------GLPDDVAKQCLALV 55

Query:    65 PRSNFPAMGTVCKKWRSFIRSKEFITVRKXXXXXXXXXXXXTMDPEGKQSQWEVLDCFGN 124
             PR+ FP+MG+VCKKWR  ++SKEFITVR+            TM+  GK ++WEV+DC G 
Sbjct:    56 PRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTMNAGGKDNRWEVMDCLGQ 115

Query:   125 RHRLLPLMPXXXXXXXXXXXXXXKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA 182
             +   LP MP              KL+V+AG  +I+G+  ASADVYQYD+CLN +  +A
Sbjct:   116 KLSSLPPMPGPAKTGFKVVVVDGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLA 173

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015979 AT1G27420 "AT1G27420" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 45/135 (33%), Positives = 67/135 (49%)

Query:    56 VAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKXXXXXXXXXXXXTMDPE-GKQS 114
             VA+  ++ +PRS+F     VC++WRSF+RS+ F  VRK             M+ E G+  
Sbjct:    18 VAELCVSKIPRSSFQITSQVCRRWRSFLRSQHFAAVRKLTGTVEEFLCVL-MESECGRDV 76

Query:   115 QWEVLDCFGNRHRLLPLMPX-XXXXXXXXXXXXXKLVVMAGYSVIDG------TASASAD 167
              WEV D  GN+   +P +P               K+V   GY+ ++G      T SASAD
Sbjct:    77 YWEVFDASGNKLGQIPPVPGPLKRGFGVAVLDGGKIVFFGGYTEVEGSGINSTTVSASAD 136

Query:   168 VYQYDSCLNRFGSVA 182
             VY++D   N +  +A
Sbjct:   137 VYEFDPANNSWRKLA 151


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.134   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      184       145   0.00071  103 3  11 22  0.40    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.89u 0.10s 9.99t   Elapsed:  00:00:01
  Total cpu time:  9.89u 0.10s 9.99t   Elapsed:  00:00:01
  Start:  Fri May 10 06:08:32 2013   End:  Fri May 10 06:08:33 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002843001 SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (385 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
pfam00646	48	pfam00646, F-box, F-box domain	2e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	2e-05

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 47 PLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEF 88
            L  LPDD+   IL+ +   +   +  V K+WRS + S + 
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKL 42

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 40.1 bits (95), Expect = 2e-05
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 52 LPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEF 88
          LPD++ + IL+ +   +   +  V +KWRS I S +F
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.66
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.63
PHA02713	557	hypothetical protein; Provisional	99.56
PHA02713	557	hypothetical protein; Provisional	99.54
PHA02790	480	Kelch-like protein; Provisional	99.5
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.46
PLN02153	341	epithiospecifier protein	99.43
PHA03098	534	kelch-like protein; Provisional	99.42
PHA02790	480	Kelch-like protein; Provisional	99.42
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.41
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.35
PLN02153	341	epithiospecifier protein	99.34
PF13964	50	Kelch_6: Kelch motif	99.33
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.32
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.31
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.29
PHA03098	534	kelch-like protein; Provisional	99.29
PLN02193	470	nitrile-specifier protein	99.28
PLN02193	470	nitrile-specifier protein	99.28
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.23
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	99.1
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	98.98
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.94
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	98.82
KOG4693	392	consensus Uncharacterized conserved protein, conta	98.71
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.64
KOG4693	392	consensus Uncharacterized conserved protein, conta	98.59
smart00612	47	Kelch Kelch domain.	98.5
KOG1230	521	consensus Protein containing repeated kelch motifs	98.45
smart00612	47	Kelch Kelch domain.	98.42
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	98.41
PF13964	50	Kelch_6: Kelch motif	98.4
KOG1230	521	consensus Protein containing repeated kelch motifs	98.36
PF13854	42	Kelch_5: Kelch motif	98.33
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.32
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.3
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.26
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.22
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	98.15
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	97.91
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	97.91
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	97.72
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	97.48
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	97.46
PLN02772	398	guanylate kinase	97.27
PLN02772	398	guanylate kinase	97.01
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	96.77
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.54
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.68
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	94.89
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	94.72
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	94.05
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	93.73
PF12768	281	Rax2: Cortical protein marker for cell polarity	91.06
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	90.42
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	89.53
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	87.83
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	87.69
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	82.81
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	81.59

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.66  E-value=1.3e-16  Score=137.78  Aligned_cols=106  Identities=22%  Similarity=0.257  Sum_probs=89.7

Q ss_pred             HhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCC-CCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCE
Q 030038           72 MGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPE-GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGK  148 (184)
Q Consensus        72 ~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~-~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~  148 (184)
                      +..+.++|..+.   .+...|..++  ..++.||++||... ....++++|||.+++|..+++|+.. |.++++++++|+
T Consensus       354 YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~~g~  429 (571)
T KOG4441|consen  354 YDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-RSGHGVAVLGGK  429 (571)
T ss_pred             ecCCCCceeccC---CccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-eeeeEEEEECCE
Confidence            345667898864   4666777665  57899999999864 3367899999999999999999995 999999999999


Q ss_pred             EEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          149 LVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       149 lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      ||++||.++   .....++|++|||.||+|+.+|+|
T Consensus       430 iYi~GG~~~---~~~~l~sve~YDP~t~~W~~~~~M  462 (571)
T KOG4441|consen  430 LYIIGGGDG---SSNCLNSVECYDPETNTWTLIAPM  462 (571)
T ss_pred             EEEEcCcCC---CccccceEEEEcCCCCceeecCCc
Confidence            999999875   233789999999999999999998

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.63  E-value=4.9e-16  Score=134.20  Aligned_cols=105  Identities=24%  Similarity=0.319  Sum_probs=88.1

Q ss_pred             HhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCC--CCCCceEEeecCCCceecCCCCCCCCccCeEEEEECC
Q 030038           72 MGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPE--GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVING  147 (184)
Q Consensus        72 ~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~--~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~  147 (184)
                      +....+.|..+...+   ..|...+  ..++.||++||...  ....++++|||.+++|..+++|+.. |.++++++++|
T Consensus       306 yd~~~~~w~~~a~m~---~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~-R~~~~v~~l~g  381 (571)
T KOG4441|consen  306 YDPKTNEWSSLAPMP---SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK-RSDFGVAVLDG  381 (571)
T ss_pred             ecCCcCcEeecCCCC---cccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc-cccceeEEECC
Confidence            344556898886433   4454444  57889999999873  3358899999999999999999998 99999999999


Q ss_pred             EEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          148 KLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       148 ~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +||++||.++    ....++||+|||.+|+|+.+++|
T Consensus       382 ~iYavGG~dg----~~~l~svE~YDp~~~~W~~va~m  414 (571)
T KOG4441|consen  382 KLYAVGGFDG----EKSLNSVECYDPVTNKWTPVAPM  414 (571)
T ss_pred             EEEEEecccc----ccccccEEEecCCCCcccccCCC
Confidence            9999999984    56788999999999999999987

>PHA02713 hypothetical protein; Provisional

Probab=99.56  E-value=6.7e-15  Score=127.17  Aligned_cols=109  Identities=15%  Similarity=0.236  Sum_probs=84.0

Q ss_pred             HhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCC-CCCceEEeecCCCceecCCCCCCCCccCeEEEEECCE
Q 030038           72 MGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEG-KQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGK  148 (184)
Q Consensus        72 ~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~-~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~  148 (184)
                      +....+.|..+.   .+...|..++  ..++.||++||.... ....+++|||.+++|..+++||.+ +.++++++++|+
T Consensus       325 Yd~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~~~~~~~~g~  400 (557)
T PHA02713        325 INIENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA-LSSYGMCVLDQY  400 (557)
T ss_pred             EECCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc-cccccEEEECCE
Confidence            344567797764   3445665544  568899999997532 246799999999999999999987 888899999999


Q ss_pred             EEEEeeeecCC--------------CCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          149 LVVMAGYSVID--------------GTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       149 lyv~GG~~~~~--------------~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      |||+||..+..              +.....++|++|||.+++|+.+++|
T Consensus       401 IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m  450 (557)
T PHA02713        401 IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF  450 (557)
T ss_pred             EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC
Confidence            99999975310              0011357899999999999999987

>PHA02713 hypothetical protein; Provisional

Probab=99.54  E-value=1.5e-14  Score=124.98  Aligned_cols=104  Identities=10%  Similarity=0.055  Sum_probs=82.0

Q ss_pred             hhcchhhhhhhcchhhHHHHHhh--cccccEEEEEeeCCC--CCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCE
Q 030038           73 GTVCKKWRSFIRSKEFITVRKLL--GLLEEWLCILTMDPE--GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGK  148 (184)
Q Consensus        73 ~~Vsk~W~~l~~s~~~~~~r~~~--~~~~~~lyv~gg~~~--~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~  148 (184)
                      ....+.|..+...+   ..|..+  ...++.||++||...  .....+++|||.++.|..+++||.+ |.++++++++|+
T Consensus       278 d~~~~~W~~l~~mp---~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~-R~~~~~~~~~g~  353 (557)
T PHA02713        278 NINTMEYSVISTIP---NHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN-RCRFSLAVIDDT  353 (557)
T ss_pred             eCCCCeEEECCCCC---ccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch-hhceeEEEECCE
Confidence            34456788775433   233333  356889999999632  2246799999999999999999987 889999999999


Q ss_pred             EEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          149 LVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       149 lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      |||+||..+    ....++|++|||.+++|+.+++|
T Consensus       354 IYviGG~~~----~~~~~sve~Ydp~~~~W~~~~~m  385 (557)
T PHA02713        354 IYAIGGQNG----TNVERTIECYTMGDDKWKMLPDM  385 (557)
T ss_pred             EEEECCcCC----CCCCceEEEEECCCCeEEECCCC
Confidence            999999853    23567899999999999999987

>PHA02790 Kelch-like protein; Provisional

Probab=99.50  E-value=4.4e-14  Score=120.21  Aligned_cols=100  Identities=13%  Similarity=0.069  Sum_probs=79.7

Q ss_pred             hhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEE
Q 030038           73 GTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLV  150 (184)
Q Consensus        73 ~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~ly  150 (184)
                      ....+.|..+..   +...|...+  ..++.||++||....  ..++.|||.+++|..+++||.+ |.++++++++|+||
T Consensus       293 dp~~~~W~~~~~---m~~~r~~~~~v~~~~~iYviGG~~~~--~sve~ydp~~n~W~~~~~l~~~-r~~~~~~~~~g~IY  366 (480)
T PHA02790        293 NYISNNWIPIPP---MNSPRLYASGVPANNKLYVVGGLPNP--TSVERWFHGDAAWVNMPSLLKP-RCNPAVASINNVIY  366 (480)
T ss_pred             ECCCCEEEECCC---CCchhhcceEEEECCEEEEECCcCCC--CceEEEECCCCeEEECCCCCCC-CcccEEEEECCEEE
Confidence            345567888754   334454433  568899999997432  5689999999999999999987 88899999999999


Q ss_pred             EEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          151 VMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       151 v~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      |+||...      ....+++|||.+++|+.+++|
T Consensus       367 viGG~~~------~~~~ve~ydp~~~~W~~~~~m  394 (480)
T PHA02790        367 VIGGHSE------TDTTTEYLLPNHDQWQFGPST  394 (480)
T ss_pred             EecCcCC------CCccEEEEeCCCCEEEeCCCC
Confidence            9999753      236799999999999999887

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.46  E-value=1.1e-13  Score=112.03  Aligned_cols=92  Identities=20%  Similarity=0.110  Sum_probs=71.7

Q ss_pred             hHHHHHhhc--ccccEEEEEeeCCC-CCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCC
Q 030038           88 FITVRKLLG--LLEEWLCILTMDPE-GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASA  164 (184)
Q Consensus        88 ~~~~r~~~~--~~~~~lyv~gg~~~-~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~  164 (184)
                      +...|..++  ..++.||++||... ...+.+++||+.+++|..++++|..+|..+.+++++++|||+||...     ..
T Consensus       110 lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~-----~~  184 (323)
T TIGR03548       110 LPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSN-----IA  184 (323)
T ss_pred             CCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCC-----cc
Confidence            444444333  46789999999632 23478999999999999999988644778888889999999999753     22


Q ss_pred             CCeEEEEeCCCCCeecCCCC
Q 030038          165 SADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       165 ~~~v~~ydp~t~~W~~~~~m  184 (184)
                      ..++++||+.+++|+.+++|
T Consensus       185 ~~~~~~yd~~~~~W~~~~~~  204 (323)
T TIGR03548       185 YTDGYKYSPKKNQWQKVADP  204 (323)
T ss_pred             ccceEEEecCCCeeEECCCC
Confidence            45689999999999999865

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=99.43  E-value=2.6e-13  Score=110.68  Aligned_cols=116  Identities=12%  Similarity=0.076  Sum_probs=82.3

Q ss_pred             chhhHhhcchhhhhhhcchhhHHH-HHh--hcccccEEEEEeeCCCC-CCCceEEeecCCCceecCCCC-----CCCCcc
Q 030038           68 NFPAMGTVCKKWRSFIRSKEFITV-RKL--LGLLEEWLCILTMDPEG-KQSQWEVLDCFGNRHRLLPLM-----PGPVKV  138 (184)
Q Consensus        68 ~~~~~~~Vsk~W~~l~~s~~~~~~-r~~--~~~~~~~lyv~gg~~~~-~~~~~~~ydp~t~~W~~lp~~-----p~~~r~  138 (184)
                      ++..+....+.|..+......... +..  ....++.||++||.... ....+++||+.+++|..++++     |.+ |.
T Consensus        51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~-R~  129 (341)
T PLN02153         51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEA-RT  129 (341)
T ss_pred             cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCC-ce
Confidence            455566677889877543221111 111  22457889999997432 246799999999999999887     544 78


Q ss_pred             CeEEEEECCEEEEEeeeecCCC--CCCCCCeEEEEeCCCCCeecCCCC
Q 030038          139 GFGVVVINGKLVVMAGYSVIDG--TASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       139 ~~~~~~~~~~lyv~GG~~~~~~--~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      ++++++.+++|||+||......  .....+++++||+.+++|+.+++|
T Consensus       130 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~  177 (341)
T PLN02153        130 FHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDP  177 (341)
T ss_pred             eeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCC
Confidence            8899999999999999853210  012357899999999999998764

>PHA03098 kelch-like protein; Provisional

Probab=99.42  E-value=2.7e-13  Score=116.71  Aligned_cols=107  Identities=18%  Similarity=0.151  Sum_probs=83.1

Q ss_pred             hHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCC-CCCceEEeecCCCceecCCCCCCCCccCeEEEEECC
Q 030038           71 AMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEG-KQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVING  147 (184)
Q Consensus        71 ~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~-~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~  147 (184)
                      .+....+.|..+..   +...|..++  ..++.||++||.... ....+++||+.+++|..++++|.+ |.+++++++++
T Consensus       315 ~yd~~~~~W~~~~~---~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-r~~~~~~~~~~  390 (534)
T PHA03098        315 SYDTKTKSWNKVPE---LIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-RYNPCVVNVNN  390 (534)
T ss_pred             EEeCCCCeeeECCC---CCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-CccceEEEECC
Confidence            34556778977643   333444443  467899999997532 246789999999999999999987 88899999999


Q ss_pred             EEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          148 KLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       148 ~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +|||+||....   ....+++++||+.+++|+.+++|
T Consensus       391 ~iYv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~~  424 (534)
T PHA03098        391 LIYVIGGISKN---DELLKTVECFSLNTNKWSKGSPL  424 (534)
T ss_pred             EEEEECCcCCC---CcccceEEEEeCCCCeeeecCCC
Confidence            99999997531   23468999999999999998875

>PHA02790 Kelch-like protein; Provisional

Probab=99.42  E-value=2.9e-13  Score=115.23  Aligned_cols=93  Identities=12%  Similarity=0.064  Sum_probs=75.2

Q ss_pred             cchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEE
Q 030038           75 VCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVM  152 (184)
Q Consensus        75 Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~  152 (184)
                      ..++|..+..   +...|..++  ..++.||++||.... ...+++|||.+++|..+++|+.+ |.++++++++|+|||+
T Consensus       339 ~~n~W~~~~~---l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~~-r~~~~~~~~~~~IYv~  413 (480)
T PHA02790        339 GDAAWVNMPS---LLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYYP-HYKSCALVFGRRLFLV  413 (480)
T ss_pred             CCCeEEECCC---CCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCCc-cccceEEEECCEEEEE
Confidence            4567877643   444554443  568899999997533 36789999999999999999987 7888889999999999


Q ss_pred             eeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          153 AGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       153 GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      ||.            +++|||.+|+|+.+++|
T Consensus       414 GG~------------~e~ydp~~~~W~~~~~m  433 (480)
T PHA02790        414 GRN------------AEFYCESSNTWTLIDDP  433 (480)
T ss_pred             CCc------------eEEecCCCCcEeEcCCC
Confidence            973            57899999999999987

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.41  E-value=6.6e-13  Score=108.44  Aligned_cols=107  Identities=16%  Similarity=0.106  Sum_probs=74.3

Q ss_pred             cchhhhhhhcchhhHHHHHhh--cccccEEEEEeeCCCC-------CCCceEEeecCCCceecCCC-CCCCCccCeEEE-
Q 030038           75 VCKKWRSFIRSKEFITVRKLL--GLLEEWLCILTMDPEG-------KQSQWEVLDCFGNRHRLLPL-MPGPVKVGFGVV-  143 (184)
Q Consensus        75 Vsk~W~~l~~s~~~~~~r~~~--~~~~~~lyv~gg~~~~-------~~~~~~~ydp~t~~W~~lp~-~p~~~r~~~~~~-  143 (184)
                      ..++|..+...+.  ..|..+  ...++.|||+||....       ....+++|||.+++|+.++. +|.. +.+++++ 
T Consensus        39 ~~~~W~~l~~~p~--~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~-~~~~~~~~  115 (346)
T TIGR03547        39 PSKGWQKIADFPG--GPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG-LLGASGFS  115 (346)
T ss_pred             CCCCceECCCCCC--CCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc-ccceeEEE
Confidence            4567988764331  234333  3567899999997421       13678999999999999984 3443 5555555 


Q ss_pred             EECCEEEEEeeeecCC--CC----------------------------CCCCCeEEEEeCCCCCeecCCCC
Q 030038          144 VINGKLVVMAGYSVID--GT----------------------------ASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       144 ~~~~~lyv~GG~~~~~--~~----------------------------~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +++++|||+||.....  +.                            ....++|++|||.+++|+.+++|
T Consensus       116 ~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~  186 (346)
T TIGR03547       116 LHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN  186 (346)
T ss_pred             EeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC
Confidence            6899999999975210  00                            00137899999999999999876

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.35  E-value=3e-12  Score=103.71  Aligned_cols=99  Identities=11%  Similarity=0.019  Sum_probs=75.7

Q ss_pred             hhhhhhcchhhHHHHHhh--cccccEEEEEeeCCCC-CCCceEEeecCCCce----ecCCCCCCCCccCeEEEEECCEEE
Q 030038           78 KWRSFIRSKEFITVRKLL--GLLEEWLCILTMDPEG-KQSQWEVLDCFGNRH----RLLPLMPGPVKVGFGVVVINGKLV  150 (184)
Q Consensus        78 ~W~~l~~s~~~~~~r~~~--~~~~~~lyv~gg~~~~-~~~~~~~ydp~t~~W----~~lp~~p~~~r~~~~~~~~~~~ly  150 (184)
                      .|..+...+   ..|...  ...++.||++||.... ....+++||+.+++|    ..++++|.+ +..+++++++++||
T Consensus        52 ~W~~~~~lp---~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-~~~~~~~~~~~~iY  127 (323)
T TIGR03548        52 KWVKDGQLP---YEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-FENGSACYKDGTLY  127 (323)
T ss_pred             eEEEcccCC---ccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-ccCceEEEECCEEE
Confidence            476665333   334322  2457889999996432 246789999999887    789999987 77888999999999


Q ss_pred             EEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          151 VMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       151 v~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      |+||...    ....+++++||+.+++|+++++|
T Consensus       128 v~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~  157 (323)
T TIGR03548       128 VGGGNRN----GKPSNKSYLFNLETQEWFELPDF  157 (323)
T ss_pred             EEeCcCC----CccCceEEEEcCCCCCeeECCCC
Confidence            9999742    23578999999999999999865

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=99.34  E-value=3.1e-12  Score=104.37  Aligned_cols=104  Identities=16%  Similarity=0.206  Sum_probs=75.1

Q ss_pred             hhhhhhhcch-hhHHHHHhhc--ccccEEEEEeeCCCC---CCCceEEeecCCCceecCCCCCCCCc---cCeEEEEECC
Q 030038           77 KKWRSFIRSK-EFITVRKLLG--LLEEWLCILTMDPEG---KQSQWEVLDCFGNRHRLLPLMPGPVK---VGFGVVVING  147 (184)
Q Consensus        77 k~W~~l~~s~-~~~~~r~~~~--~~~~~lyv~gg~~~~---~~~~~~~ydp~t~~W~~lp~~p~~~r---~~~~~~~~~~  147 (184)
                      ..|..+.... .....|..++  ..++.|||+||....   ..+.+++||+.+++|..+++++..++   .+++++++++
T Consensus         7 ~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~   86 (341)
T PLN02153          7 GGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGT   86 (341)
T ss_pred             CeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECC
Confidence            3477775421 1233444443  457889999997421   13579999999999999987653223   3678889999


Q ss_pred             EEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          148 KLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       148 ~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +|||+||...    ....+++++||+.+++|+.+++|
T Consensus        87 ~iyv~GG~~~----~~~~~~v~~yd~~t~~W~~~~~~  119 (341)
T PLN02153         87 KLYIFGGRDE----KREFSDFYSYDTVKNEWTFLTKL  119 (341)
T ss_pred             EEEEECCCCC----CCccCcEEEEECCCCEEEEeccC
Confidence            9999999753    23467899999999999988754

>PF13964 Kelch_6: Kelch motif

Probab=99.33  E-value=3.5e-12  Score=75.28  Aligned_cols=45  Identities=31%  Similarity=0.499  Sum_probs=40.2

Q ss_pred             ccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          137 KVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       137 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      |.++++++++++|||+||....   ....+++++||+.|++|+++++|
T Consensus         2 R~~~s~v~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~m   46 (50)
T PF13964_consen    2 RYGHSAVVVGGKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPPM   46 (50)
T ss_pred             CccCEEEEECCEEEEECCCCCC---CCccccEEEEcCCCCcEEECCCC
Confidence            6788999999999999998642   45789999999999999999997

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.32  E-value=3.7e-12  Score=105.35  Aligned_cols=106  Identities=18%  Similarity=0.139  Sum_probs=73.4

Q ss_pred             chhhhhhhcchhhHHHHHhh--cccccEEEEEeeCCC-C------CCCceEEeecCCCceecCCCC-CCCCccCeEEEE-
Q 030038           76 CKKWRSFIRSKEFITVRKLL--GLLEEWLCILTMDPE-G------KQSQWEVLDCFGNRHRLLPLM-PGPVKVGFGVVV-  144 (184)
Q Consensus        76 sk~W~~l~~s~~~~~~r~~~--~~~~~~lyv~gg~~~-~------~~~~~~~ydp~t~~W~~lp~~-p~~~r~~~~~~~-  144 (184)
                      .++|..+...+.  ..|..+  ...++.|||+||... .      ....+++||+.+++|+.++++ |.. +.++++++ 
T Consensus        61 ~~~W~~l~~~p~--~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~-~~~~~~~~~  137 (376)
T PRK14131         61 SKGWTKIAAFPG--GPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVG-LAGHVAVSL  137 (376)
T ss_pred             CCCeEECCcCCC--CCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCc-ccceEEEEe
Confidence            467987754332  134333  356789999999743 1      135789999999999999863 333 55666665 


Q ss_pred             ECCEEEEEeeeecCC--C----------------------------CCCCCCeEEEEeCCCCCeecCCCC
Q 030038          145 INGKLVVMAGYSVID--G----------------------------TASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       145 ~~~~lyv~GG~~~~~--~----------------------------~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      .+++|||+||.....  +                            .....++|++||+.+++|+.+++|
T Consensus       138 ~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~  207 (376)
T PRK14131        138 HNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES  207 (376)
T ss_pred             eCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC
Confidence            899999999974210  0                            001247899999999999998765

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.31  E-value=3e-12  Score=104.59  Aligned_cols=111  Identities=14%  Similarity=0.009  Sum_probs=78.3

Q ss_pred             hhhHhhcchhhhhhhcchhhHHHHHhhc---ccccEEEEEeeCCCC----------------------------------
Q 030038           69 FPAMGTVCKKWRSFIRSKEFITVRKLLG---LLEEWLCILTMDPEG----------------------------------  111 (184)
Q Consensus        69 ~~~~~~Vsk~W~~l~~s~~~~~~r~~~~---~~~~~lyv~gg~~~~----------------------------------  111 (184)
                      ..++....+.|..+.. + ....|..+.   ..++.||++||....                                  
T Consensus        87 v~~Yd~~~~~W~~~~~-~-~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (346)
T TIGR03547        87 VYRYDPKKNSWQKLDT-R-SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDY  164 (346)
T ss_pred             EEEEECCCCEEecCCC-C-CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHc
Confidence            3445667788998852 1 222232221   358899999996421                                  


Q ss_pred             -CCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEE--eCCCCCeecCCCC
Q 030038          112 -KQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQY--DSCLNRFGSVAFY  184 (184)
Q Consensus       112 -~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~y--dp~t~~W~~~~~m  184 (184)
                       ....+++|||.+++|..+++||..++.++++++++++|||+||....   .....++++|  |+.+++|..+++|
T Consensus       165 ~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~y~~~~~~~~W~~~~~m  237 (346)
T TIGR03547       165 FWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKP---GLRTAEVKQYLFTGGKLEWNKLPPL  237 (346)
T ss_pred             CccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCC---CccchheEEEEecCCCceeeecCCC
Confidence             02578999999999999999986447788889999999999997531   1123455555  5678899999887

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.29  E-value=3.8e-12  Score=74.08  Aligned_cols=45  Identities=24%  Similarity=0.426  Sum_probs=40.9

Q ss_pred             ccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          137 KVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       137 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      |.++++++++++|||+||...   .....+++++||+.+++|+.+++|
T Consensus         2 R~~~~~~~~~~~iyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~m   46 (47)
T PF01344_consen    2 RSGHAAVVVGNKIYVIGGYDG---NNQPTNSVEVYDPETNTWEELPPM   46 (47)
T ss_dssp             BBSEEEEEETTEEEEEEEBES---TSSBEEEEEEEETTTTEEEEEEEE
T ss_pred             CccCEEEEECCEEEEEeeecc---cCceeeeEEEEeCCCCEEEEcCCC
Confidence            778999999999999999975   356789999999999999999987

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PHA03098 kelch-like protein; Provisional

Probab=99.29  E-value=1.5e-11  Score=105.85  Aligned_cols=83  Identities=13%  Similarity=0.145  Sum_probs=70.6

Q ss_pred             ccccEEEEEeeCCCC--CCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCC
Q 030038           97 LLEEWLCILTMDPEG--KQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSC  174 (184)
Q Consensus        97 ~~~~~lyv~gg~~~~--~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~  174 (184)
                      ..++.||++||....  ....+++||+.+++|..+++|+.+ |.++++++++++|||+||...    ....+++++||+.
T Consensus       292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-R~~~~~~~~~~~lyv~GG~~~----~~~~~~v~~yd~~  366 (534)
T PHA03098        292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP-RKNPGVTVFNNRIYVIGGIYN----SISLNTVESWKPG  366 (534)
T ss_pred             EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc-cccceEEEECCEEEEEeCCCC----CEecceEEEEcCC
Confidence            467889999997532  235789999999999999999976 888999999999999999853    3457889999999


Q ss_pred             CCCeecCCCC
Q 030038          175 LNRFGSVAFY  184 (184)
Q Consensus       175 t~~W~~~~~m  184 (184)
                      +++|+.+++|
T Consensus       367 ~~~W~~~~~l  376 (534)
T PHA03098        367 ESKWREEPPL  376 (534)
T ss_pred             CCceeeCCCc
Confidence            9999999876

>PLN02193 nitrile-specifier protein

Probab=99.28  E-value=1.2e-11  Score=105.21  Aligned_cols=104  Identities=17%  Similarity=0.192  Sum_probs=76.9

Q ss_pred             hhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCC---CCCceEEeecCCCceecCCCC---CCCCccCeEEEEECCE
Q 030038           77 KKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEG---KQSQWEVLDCFGNRHRLLPLM---PGPVKVGFGVVVINGK  148 (184)
Q Consensus        77 k~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~---~~~~~~~ydp~t~~W~~lp~~---p~~~r~~~~~~~~~~~  148 (184)
                      ..|..+....+....|..++  ..++.||++||....   ....+++||+.+++|..++++   |...+.++++++++++
T Consensus       151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~  230 (470)
T PLN02193        151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST  230 (470)
T ss_pred             ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE
Confidence            57988764333334555444  457889999996321   125699999999999998754   3222457788899999


Q ss_pred             EEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          149 LVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       149 lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      |||+||...    ....+++++||+.+++|+++++|
T Consensus       231 lYvfGG~~~----~~~~ndv~~yD~~t~~W~~l~~~  262 (470)
T PLN02193        231 LYVFGGRDA----SRQYNGFYSFDTTTNEWKLLTPV  262 (470)
T ss_pred             EEEECCCCC----CCCCccEEEEECCCCEEEEcCcC
Confidence            999999763    24578999999999999998765

>PLN02193 nitrile-specifier protein

Probab=99.28  E-value=7.1e-12  Score=106.48  Aligned_cols=110  Identities=11%  Similarity=0.116  Sum_probs=80.7

Q ss_pred             hhhHhhcchhhhhhhcchhhHH-HHHhh--cccccEEEEEeeCCCC-CCCceEEeecCCCceecCCCC---CCCCccCeE
Q 030038           69 FPAMGTVCKKWRSFIRSKEFIT-VRKLL--GLLEEWLCILTMDPEG-KQSQWEVLDCFGNRHRLLPLM---PGPVKVGFG  141 (184)
Q Consensus        69 ~~~~~~Vsk~W~~l~~s~~~~~-~r~~~--~~~~~~lyv~gg~~~~-~~~~~~~ydp~t~~W~~lp~~---p~~~r~~~~  141 (184)
                      +..+....++|..+........ .|..+  ...++.|||+||.... ..+.+++||+.+++|..++++   |.+ |.+++
T Consensus       195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~-R~~h~  273 (470)
T PLN02193        195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTP-RSFHS  273 (470)
T ss_pred             EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCC-ccceE
Confidence            4455566778986543212221 12222  2467899999997432 347899999999999999887   554 88889


Q ss_pred             EEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCC
Q 030038          142 VVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAF  183 (184)
Q Consensus       142 ~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~  183 (184)
                      +++.+++|||+||...    ....+++++||+.+++|+.+++
T Consensus       274 ~~~~~~~iYv~GG~~~----~~~~~~~~~yd~~t~~W~~~~~  311 (470)
T PLN02193        274 MAADEENVYVFGGVSA----TARLKTLDSYNIVDKKWFHCST  311 (470)
T ss_pred             EEEECCEEEEECCCCC----CCCcceEEEEECCCCEEEeCCC
Confidence            9999999999999863    3356789999999999998763

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.23  E-value=1.8e-11  Score=101.25  Aligned_cols=114  Identities=11%  Similarity=-0.032  Sum_probs=78.3

Q ss_pred             chhhHhhcchhhhhhhcchhhHHHHHhhc--c-cccEEEEEeeCCCC---------------------------------
Q 030038           68 NFPAMGTVCKKWRSFIRSKEFITVRKLLG--L-LEEWLCILTMDPEG---------------------------------  111 (184)
Q Consensus        68 ~~~~~~~Vsk~W~~l~~s~~~~~~r~~~~--~-~~~~lyv~gg~~~~---------------------------------  111 (184)
                      ++.++....++|..+....  ...+..+.  . .++.||++||....                                 
T Consensus       107 ~v~~YD~~~n~W~~~~~~~--p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~  184 (376)
T PRK14131        107 DVYKYDPKTNSWQKLDTRS--PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED  184 (376)
T ss_pred             cEEEEeCCCCEEEeCCCCC--CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence            3445566678899986321  12222222  2 68899999996421                                 


Q ss_pred             --CCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          112 --KQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       112 --~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                        ....+++|||.+++|..++++|...+.++++++++++|||+||.... +........+.||+.+++|..+++|
T Consensus       185 ~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~-~~~~~~~~~~~~~~~~~~W~~~~~~  258 (376)
T PRK14131        185 YFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKP-GLRTDAVKQGKFTGNNLKWQKLPDL  258 (376)
T ss_pred             cCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECC-CcCChhheEEEecCCCcceeecCCC
Confidence              02568999999999999999987547788888899999999997531 1111122234568899999999876

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.10  E-value=2.6e-10  Score=66.97  Aligned_cols=47  Identities=32%  Similarity=0.614  Sum_probs=39.5

Q ss_pred             ccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          137 KVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       137 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      |.++++++++++|||+||... .......+++++||+.+++|+.+++|
T Consensus         2 r~~hs~~~~~~kiyv~GG~~~-~~~~~~~~~v~~~d~~t~~W~~~~~~   48 (49)
T PF07646_consen    2 RYGHSAVVLDGKIYVFGGYGT-DNGGSSSNDVWVFDTETNQWTELSPM   48 (49)
T ss_pred             ccceEEEEECCEEEEECCccc-CCCCcccceeEEEECCCCEEeecCCC
Confidence            678899999999999999911 11346788999999999999999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=98.98  E-value=9.2e-10  Score=93.84  Aligned_cols=112  Identities=16%  Similarity=0.193  Sum_probs=83.8

Q ss_pred             chhhHhhcchhhhhhhcchhhHHHHHhh--cccccEEEEEeeCCC--CCCCceEEeecCCCceecCCCCC--CCCccCeE
Q 030038           68 NFPAMGTVCKKWRSFIRSKEFITVRKLL--GLLEEWLCILTMDPE--GKQSQWEVLDCFGNRHRLLPLMP--GPVKVGFG  141 (184)
Q Consensus        68 ~~~~~~~Vsk~W~~l~~s~~~~~~r~~~--~~~~~~lyv~gg~~~--~~~~~~~~ydp~t~~W~~lp~~p--~~~r~~~~  141 (184)
                      ++..++..++.|............|..+  ......||++||...  .....++.||+.+++|..+.+..  +++|.+|+
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs  168 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS  168 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence            3555666778887776554444344333  245688999999753  22468999999999999987532  23489999


Q ss_pred             EEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCC
Q 030038          142 VVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA  182 (184)
Q Consensus       142 ~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~  182 (184)
                      +++++.+|||+||....   ....+++++||..+.+|.++.
T Consensus       169 ~~~~g~~l~vfGG~~~~---~~~~ndl~i~d~~~~~W~~~~  206 (482)
T KOG0379|consen  169 ATVVGTKLVVFGGIGGT---GDSLNDLHIYDLETSTWSELD  206 (482)
T ss_pred             EEEECCEEEEECCccCc---ccceeeeeeeccccccceecc
Confidence            99999999999998642   237899999999999999874

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.94  E-value=1.7e-09  Score=63.30  Aligned_cols=45  Identities=20%  Similarity=0.338  Sum_probs=30.3

Q ss_pred             ccCeEEEEE-CCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          137 KVGFGVVVI-NGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       137 r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      |.+|+++.+ +++|||+||....   ....+++++||+.+++|+++++|
T Consensus         2 R~~h~~~~~~~~~i~v~GG~~~~---~~~~~d~~~~d~~~~~W~~~~~~   47 (49)
T PF13418_consen    2 RYGHSAVSIGDNSIYVFGGRDSS---GSPLNDLWIFDIETNTWTRLPSM   47 (49)
T ss_dssp             -BS-EEEEE-TTEEEEE--EEE----TEE---EEEEETTTTEEEE--SS
T ss_pred             cceEEEEEEeCCeEEEECCCCCC---CcccCCEEEEECCCCEEEECCCC
Confidence            778888888 5899999998752   35789999999999999999876

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=98.82  E-value=6.6e-09  Score=88.64  Aligned_cols=112  Identities=14%  Similarity=0.132  Sum_probs=85.2

Q ss_pred             chhhHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCC--CCCceEEeecCCCceecCCC---CCCCCccCe
Q 030038           68 NFPAMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEG--KQSQWEVLDCFGNRHRLLPL---MPGPVKVGF  140 (184)
Q Consensus        68 ~~~~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~--~~~~~~~ydp~t~~W~~lp~---~p~~~r~~~  140 (184)
                      ++..+..-+..|..+..-......|..+.  .....+||+||....  ..+.+++||..+.+|.++..   .|. +|.+|
T Consensus       140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~-pR~gH  218 (482)
T KOG0379|consen  140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS-PRYGH  218 (482)
T ss_pred             heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC-CCCCc
Confidence            44556667788888764444444554443  456899999997543  36889999999999999863   344 48999


Q ss_pred             EEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCC
Q 030038          141 GVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAF  183 (184)
Q Consensus       141 ~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~  183 (184)
                      ++++++++++|+||...   .....++++.+|..+.+|..++.
T Consensus       219 ~~~~~~~~~~v~gG~~~---~~~~l~D~~~ldl~~~~W~~~~~  258 (482)
T KOG0379|consen  219 AMVVVGNKLLVFGGGDD---GDVYLNDVHILDLSTWEWKLLPT  258 (482)
T ss_pred             eEEEECCeEEEEecccc---CCceecceEeeecccceeeeccc
Confidence            99999999999999762   35678999999999999997653

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=98.71  E-value=3.5e-08  Score=76.66  Aligned_cols=83  Identities=18%  Similarity=0.293  Sum_probs=65.5

Q ss_pred             ccccEEEEEeeCCCCC----------CCceEEeecCCCceecCCCC---CCCCccCeEEEEECCEEEEEeeeecCCCCCC
Q 030038           97 LLEEWLCILTMDPEGK----------QSQWEVLDCFGNRHRLLPLM---PGPVKVGFGVVVINGKLVVMAGYSVIDGTAS  163 (184)
Q Consensus        97 ~~~~~lyv~gg~~~~~----------~~~~~~ydp~t~~W~~lp~~---p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~  163 (184)
                      ..++..||+||..+..          -+.+.++|..|..|...|+-   |.. |..++.-+.++++|++||+.+.  .+.
T Consensus       189 ~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~G-RRSHS~fvYng~~Y~FGGYng~--ln~  265 (392)
T KOG4693|consen  189 VIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGG-RRSHSTFVYNGKMYMFGGYNGT--LNV  265 (392)
T ss_pred             hccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCc-ccccceEEEcceEEEecccchh--hhh
Confidence            4678899999975421          14567899999999998753   333 6677888899999999999763  345


Q ss_pred             CCCeEEEEeCCCCCeecCC
Q 030038          164 ASADVYQYDSCLNRFGSVA  182 (184)
Q Consensus       164 ~~~~v~~ydp~t~~W~~~~  182 (184)
                      ..+++|+|||.|..|..+.
T Consensus       266 HfndLy~FdP~t~~W~~I~  284 (392)
T KOG4693|consen  266 HFNDLYCFDPKTSMWSVIS  284 (392)
T ss_pred             hhcceeecccccchheeee
Confidence            7899999999999999764

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.64  E-value=2.6e-08  Score=57.77  Aligned_cols=41  Identities=20%  Similarity=0.577  Sum_probs=35.2

Q ss_pred             CCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcchhhH
Q 030038           49 LPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFI   89 (184)
Q Consensus        49 ~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~~   89 (184)
                      |..||+|++.+||..++..++.+++.|||+|+.++.+..+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW   41 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW   41 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence            67899999999999999999999999999999999766443

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=98.59  E-value=9.8e-08  Score=74.23  Aligned_cols=82  Identities=13%  Similarity=0.142  Sum_probs=65.8

Q ss_pred             cccEEEEEeeCCCC-C-CCceEEeecCCCceecCC---CCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEe
Q 030038           98 LEEWLCILTMDPEG-K-QSQWEVLDCFGNRHRLLP---LMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYD  172 (184)
Q Consensus        98 ~~~~lyv~gg~~~~-~-~~~~~~ydp~t~~W~~lp---~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~yd  172 (184)
                      .+..+|+-||.++. . -+-+++|||++++|.+..   -.|.. |.++++++.++.+|++||+...  ....+.+++++|
T Consensus        87 y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPga-RDGHsAcV~gn~MyiFGGye~~--a~~FS~d~h~ld  163 (392)
T KOG4693|consen   87 YQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGA-RDGHSACVWGNQMYIFGGYEED--AQRFSQDTHVLD  163 (392)
T ss_pred             EcceEEEEcCccCcccccceeeeeccccccccccceeeecCCc-cCCceeeEECcEEEEecChHHH--HHhhhccceeEe
Confidence            46789999997652 2 256789999999999854   24555 8999999999999999998653  245688999999


Q ss_pred             CCCCCeecCC
Q 030038          173 SCLNRFGSVA  182 (184)
Q Consensus       173 p~t~~W~~~~  182 (184)
                      ..|-+|+.+.
T Consensus       164 ~~TmtWr~~~  173 (392)
T KOG4693|consen  164 FATMTWREMH  173 (392)
T ss_pred             ccceeeeehh
Confidence            9999999863

>smart00612 Kelch Kelch domain

Probab=98.50  E-value=3.3e-07  Score=52.48  Aligned_cols=45  Identities=36%  Similarity=0.484  Sum_probs=36.9

Q ss_pred             EEEEeeCCC-CCCCceEEeecCCCceecCCCCCCCCccCeEEEEECC
Q 030038          102 LCILTMDPE-GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVING  147 (184)
Q Consensus       102 lyv~gg~~~-~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~  147 (184)
                      ||++||... .....+++|||.+++|..+++|+.. |..++++++++
T Consensus         2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~~g   47 (47)
T smart00612        2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTP-RSGHGVAVING   47 (47)
T ss_pred             EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCc-cccceEEEeCC
Confidence            899999753 2346789999999999999999987 88888777664

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.45  E-value=2.4e-07  Score=75.81  Aligned_cols=112  Identities=15%  Similarity=0.229  Sum_probs=81.3

Q ss_pred             hhHhhcchhhhhhhcchhhHHHHHhhc---ccccEEEEEeeCCCC-------CCCceEEeecCCCceecCCC--CCCCCc
Q 030038           70 PAMGTVCKKWRSFIRSKEFITVRKLLG---LLEEWLCILTMDPEG-------KQSQWEVLDCFGNRHRLLPL--MPGPVK  137 (184)
Q Consensus        70 ~~~~~Vsk~W~~l~~s~~~~~~r~~~~---~~~~~lyv~gg~~~~-------~~~~~~~ydp~t~~W~~lp~--~p~~~r  137 (184)
                      .+...-...|+.+. +|.-.-.|+.+.   ...+.++++||.-..       ....++.||..+++|.+|..  -|.+ |
T Consensus       101 y~Yn~k~~eWkk~~-spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~-R  178 (521)
T KOG1230|consen  101 YSYNTKKNEWKKVV-SPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP-R  178 (521)
T ss_pred             eEEeccccceeEec-cCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC-C
Confidence            33444556798874 343334555543   345789999985221       13568899999999999864  3444 8


Q ss_pred             cCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCC
Q 030038          138 VGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAF  183 (184)
Q Consensus       138 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~  183 (184)
                      .||.+++-..+|++|||+-...+.....++||+||..|=+|.++.+
T Consensus       179 SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep  224 (521)
T KOG1230|consen  179 SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP  224 (521)
T ss_pred             ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence            9999999999999999986543344578999999999999998854

>smart00612 Kelch Kelch domain

Probab=98.42  E-value=2.6e-07  Score=52.91  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=28.1

Q ss_pred             EEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          148 KLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       148 ~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +|||+||...    ....+++++||+.+++|+.+++|
T Consensus         1 ~iyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~   33 (47)
T smart00612        1 KIYVVGGFDG----GQRLKSVEVYDPETNKWTPLPSM   33 (47)
T ss_pred             CEEEEeCCCC----CceeeeEEEECCCCCeEccCCCC
Confidence            5899999853    34578999999999999999887

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.41  E-value=6.9e-07  Score=71.88  Aligned_cols=82  Identities=22%  Similarity=0.324  Sum_probs=64.3

Q ss_pred             cccEEEEEeeCCCCCCCceEEeecCC--CceecCCCCCCCCccCeEEEEECCEEEEEeeeecC-CCCCCCCCeEEEEeCC
Q 030038           98 LEEWLCILTMDPEGKQSQWEVLDCFG--NRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVI-DGTASASADVYQYDSC  174 (184)
Q Consensus        98 ~~~~lyv~gg~~~~~~~~~~~ydp~t--~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~v~~ydp~  174 (184)
                      .+..+||-.|...   ..++..|...  ..|+++...|..+|.+...++++++|||+||.... .......+++++|||.
T Consensus        45 ig~~~YVGLGs~G---~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~  121 (381)
T COG3055          45 IGDTVYVGLGSAG---TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPS  121 (381)
T ss_pred             ecceEEEEeccCC---ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCC
Confidence            4557898887533   4588887654  68999999998889888889999999999997321 1123467899999999


Q ss_pred             CCCeecCC
Q 030038          175 LNRFGSVA  182 (184)
Q Consensus       175 t~~W~~~~  182 (184)
                      +|+|.++.
T Consensus       122 ~nsW~kl~  129 (381)
T COG3055         122 TNSWHKLD  129 (381)
T ss_pred             CChhheec
Confidence            99999874

>PF13964 Kelch_6: Kelch motif

Probab=98.40  E-value=4.7e-07  Score=53.10  Aligned_cols=39  Identities=21%  Similarity=0.193  Sum_probs=33.1

Q ss_pred             ccccEEEEEeeCCC--CCCCceEEeecCCCceecCCCCCCC
Q 030038           97 LLEEWLCILTMDPE--GKQSQWEVLDCFGNRHRLLPLMPGP  135 (184)
Q Consensus        97 ~~~~~lyv~gg~~~--~~~~~~~~ydp~t~~W~~lp~~p~~  135 (184)
                      ..++.|||+||...  ...+.+++||+.+++|..+++||.+
T Consensus         9 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p   49 (50)
T PF13964_consen    9 VVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP   49 (50)
T ss_pred             EECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence            46789999999755  2357899999999999999999975

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.36  E-value=5.1e-07  Score=73.89  Aligned_cols=120  Identities=13%  Similarity=0.071  Sum_probs=84.9

Q ss_pred             cCCccchhhHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCCC-----CCceEEeecCCCceecCCCCC--
Q 030038           63 LVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEGK-----QSQWEVLDCFGNRHRLLPLMP--  133 (184)
Q Consensus        63 rlp~~~~~~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~~-----~~~~~~ydp~t~~W~~lp~~p--  133 (184)
                      +..+++++.+.++.+.|..|..- --...|+-+.  +-...|++|||..+..     .+.+++||..+-+|..+.+.-  
T Consensus       150 F~HYkD~W~fd~~trkweql~~~-g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~  228 (521)
T KOG1230|consen  150 FHHYKDLWLFDLKTRKWEQLEFG-GGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAG  228 (521)
T ss_pred             hhhhhheeeeeeccchheeeccC-CCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCC
Confidence            34567888899999999998522 1223454443  3456789999864321     478999999999999997632  


Q ss_pred             CCCccCeEEEEE-CCEEEEEeeeecCC-----CCCCCCCeEEEEeCCC-----CCeecCCC
Q 030038          134 GPVKVGFGVVVI-NGKLVVMAGYSVID-----GTASASADVYQYDSCL-----NRFGSVAF  183 (184)
Q Consensus       134 ~~~r~~~~~~~~-~~~lyv~GG~~~~~-----~~~~~~~~v~~ydp~t-----~~W~~~~~  183 (184)
                      +.+|.||...+. +|.|||.||++...     ......++++..+|.+     -.|.++-+
T Consensus       229 PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp  289 (521)
T KOG1230|consen  229 PTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP  289 (521)
T ss_pred             CCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence            224889888777 99999999985321     1223577899999998     56777643

>PF13854 Kelch_5: Kelch motif

Probab=98.33  E-value=1.9e-06  Score=48.69  Aligned_cols=41  Identities=32%  Similarity=0.533  Sum_probs=33.3

Q ss_pred             CCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCC
Q 030038          133 PGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLN  176 (184)
Q Consensus       133 p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~  176 (184)
                      |.+ |.+|++++++++||++||...  ......+++|+||..++
T Consensus         2 P~~-R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    2 PSP-RYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCC-ccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCCC
Confidence            444 899999999999999999873  13567899999998763

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.32  E-value=1.7e-07  Score=54.49  Aligned_cols=42  Identities=29%  Similarity=0.589  Sum_probs=34.9

Q ss_pred             CCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcchhhHH
Q 030038           49 LPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFIT   90 (184)
Q Consensus        49 ~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~~~   90 (184)
                      |..||+|++.+|+.+++..++..++.|||+|+.++.+..+..
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~   44 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK   44 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence            457999999999999999999999999999999998876543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.30  E-value=4e-07  Score=50.82  Aligned_cols=38  Identities=34%  Similarity=0.739  Sum_probs=34.8

Q ss_pred             ChHHHHHHHhccCCccchhhHhhcchhhhhhhcchhhH
Q 030038           52 LPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFI   89 (184)
Q Consensus        52 LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~~   89 (184)
                      ||+|++.+|+.+++..++.+++.|||+|+.++..+.+.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~   38 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW   38 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence            79999999999999999999999999999999776553

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.26  E-value=2.8e-06  Score=49.57  Aligned_cols=44  Identities=18%  Similarity=0.177  Sum_probs=36.4

Q ss_pred             cEEEEEeeCCC---CCCCceEEeecCCCceecCCCCCCCCccCeEEEE
Q 030038          100 EWLCILTMDPE---GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVV  144 (184)
Q Consensus       100 ~~lyv~gg~~~---~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~  144 (184)
                      +.+||+||...   ...+++++||+.+++|++++.+|.+ |.+|++++
T Consensus         2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~-R~~h~~~~   48 (49)
T PF13415_consen    2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPP-RSGHTATV   48 (49)
T ss_pred             CEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCC-ccceEEEE
Confidence            56999999762   2257899999999999999998887 88888765

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.22  E-value=2e-06  Score=50.21  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=30.2

Q ss_pred             CCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          146 NGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       146 ~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +++|||+||....  .....+++++||+.+++|++++++
T Consensus         1 g~~~~vfGG~~~~--~~~~~nd~~~~~~~~~~W~~~~~~   37 (49)
T PF13415_consen    1 GNKLYVFGGYDDD--GGTRLNDVWVFDLDTNTWTRIGDL   37 (49)
T ss_pred             CCEEEEECCcCCC--CCCEecCEEEEECCCCEEEECCCC
Confidence            5789999998731  256789999999999999998653

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.15  E-value=6.2e-07  Score=75.31  Aligned_cols=101  Identities=19%  Similarity=0.262  Sum_probs=71.8

Q ss_pred             hhhhhhcch-hhHHHHHhhc--ccccEEEEEeeCCCCCCCceEEeecCCCceecCC---CCCCCCccCeEEEEECCEEEE
Q 030038           78 KWRSFIRSK-EFITVRKLLG--LLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLP---LMPGPVKVGFGVVVINGKLVV  151 (184)
Q Consensus        78 ~W~~l~~s~-~~~~~r~~~~--~~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp---~~p~~~r~~~~~~~~~~~lyv  151 (184)
                      +|+++.++. ...+.|+-+.  ...+.+.+|||.+++-..++++||..+++|..-.   .+|.. ...|+.+..+.+|||
T Consensus        18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpg-cAA~GfvcdGtrilv   96 (830)
T KOG4152|consen   18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPG-CAAFGFVCDGTRILV   96 (830)
T ss_pred             ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCc-hhhcceEecCceEEE
Confidence            688886542 2334454433  3567788888887766678999999999998643   34444 456777888899999


Q ss_pred             EeeeecCCCCCCCCCeEEEEeCCCCCeecCC
Q 030038          152 MAGYSVIDGTASASADVYQYDSCLNRFGSVA  182 (184)
Q Consensus       152 ~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~  182 (184)
                      |||....   ...++++|-.....-.|+++.
T Consensus        97 FGGMvEY---GkYsNdLYELQasRWeWkrlk  124 (830)
T KOG4152|consen   97 FGGMVEY---GKYSNDLYELQASRWEWKRLK  124 (830)
T ss_pred             EccEeee---ccccchHHHhhhhhhhHhhcC
Confidence            9998763   457777776666666777764

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=97.91  E-value=4.5e-06  Score=48.03  Aligned_cols=37  Identities=22%  Similarity=0.196  Sum_probs=31.1

Q ss_pred             ccccEEEEEeeCCC--CCCCceEEeecCCCceecCCCCC
Q 030038           97 LLEEWLCILTMDPE--GKQSQWEVLDCFGNRHRLLPLMP  133 (184)
Q Consensus        97 ~~~~~lyv~gg~~~--~~~~~~~~ydp~t~~W~~lp~~p  133 (184)
                      ..++.||++||...  .....+++||+.+++|+.+++||
T Consensus         9 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    9 VVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             EECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            46789999999754  23578999999999999999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.91  E-value=1.3e-05  Score=64.73  Aligned_cols=136  Identities=18%  Similarity=0.190  Sum_probs=84.6

Q ss_pred             CCCCCCCCChHHHHHHHhccCCccchhh------------HhhcchhhhhhhcchhhHH-HHHh--hcccccEEEEEeeC
Q 030038           44 LDSPLLPGLPDDVAKCILALVPRSNFPA------------MGTVCKKWRSFIRSKEFIT-VRKL--LGLLEEWLCILTMD  108 (184)
Q Consensus        44 ~~~~~~~~LP~dl~~~il~rlp~~~~~~------------~~~Vsk~W~~l~~s~~~~~-~r~~--~~~~~~~lyv~gg~  108 (184)
                      .....+|.||.-+-.-.-+++--..+.-            +.--+|.|..+..   |.- .|.+  ....+..||+++|.
T Consensus        25 ~~a~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~---FpG~~rnqa~~a~~~~kLyvFgG~  101 (381)
T COG3055          25 AYAGQLPDLPVGFKNGAGALIGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIAD---FPGGARNQAVAAVIGGKLYVFGGY  101 (381)
T ss_pred             HhhccCCCCCccccccccceecceEEEEeccCCccceehhhhcCCCCceEccc---CCCcccccchheeeCCeEEEeecc
Confidence            3456777777554443333333223322            2335677777642   332 2322  23567889999986


Q ss_pred             CCCC------CCceEEeecCCCceecCCCCCCCCccCeEEEEECC-EEEEEeeeecCC-----------CC---------
Q 030038          109 PEGK------QSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVING-KLVVMAGYSVID-----------GT---------  161 (184)
Q Consensus       109 ~~~~------~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~-~lyv~GG~~~~~-----------~~---------  161 (184)
                      ....      .+.++.|||.+++|+.+....+....++..+.+++ +||++||.+...           +.         
T Consensus       102 Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~  181 (381)
T COG3055         102 GKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII  181 (381)
T ss_pred             ccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence            3221      36789999999999999854332245677777887 999999975320           00         


Q ss_pred             ----------CCCCCeEEEEeCCCCCeecCC
Q 030038          162 ----------ASASADVYQYDSCLNRFGSVA  182 (184)
Q Consensus       162 ----------~~~~~~v~~ydp~t~~W~~~~  182 (184)
                                -.....|..|||.++.|+.+.
T Consensus       182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G  212 (381)
T COG3055         182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLG  212 (381)
T ss_pred             HHHhCCCHHHhcccccccccccccchhhhcC
Confidence                      112457999999999998753

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=97.72  E-value=8.6e-05  Score=62.76  Aligned_cols=83  Identities=8%  Similarity=0.007  Sum_probs=62.2

Q ss_pred             ccEEEEEeeCCCCCCCceEEeecCCCceecCCC--CCCCCccCeEEEEECCEEEEEeeeecCC----------CCCCCCC
Q 030038           99 EEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPL--MPGPVKVGFGVVVINGKLVVMAGYSVID----------GTASASA  166 (184)
Q Consensus        99 ~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~--~p~~~r~~~~~~~~~~~lyv~GG~~~~~----------~~~~~~~  166 (184)
                      ...+||.||...-.+..++.+|.++-.|.+...  .++.+|..|..+++++|+||+||+....          ..+.+.+
T Consensus       215 ~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTs  294 (830)
T KOG4152|consen  215 KSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTS  294 (830)
T ss_pred             cceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeecc
Confidence            357899998765556789999999999988531  1111277888999999999999986531          1245677


Q ss_pred             eEEEEeCCCCCeecC
Q 030038          167 DVYQYDSCLNRFGSV  181 (184)
Q Consensus       167 ~v~~ydp~t~~W~~~  181 (184)
                      ++-+.|..+..|..+
T Consensus       295 sl~clNldt~~W~tl  309 (830)
T KOG4152|consen  295 SLACLNLDTMAWETL  309 (830)
T ss_pred             ceeeeeecchheeee
Confidence            888899999999865

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=97.48  E-value=0.00023  Score=41.35  Aligned_cols=37  Identities=16%  Similarity=0.085  Sum_probs=29.9

Q ss_pred             ccccEEEEEeeC--C--CCCCCceEEeecCCCceecCCCCC
Q 030038           97 LLEEWLCILTMD--P--EGKQSQWEVLDCFGNRHRLLPLMP  133 (184)
Q Consensus        97 ~~~~~lyv~gg~--~--~~~~~~~~~ydp~t~~W~~lp~~p  133 (184)
                      ..++.|||+||.  .  ....+.+++||+.+++|+.+++++
T Consensus         9 ~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    9 VLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             EECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            567899999998  1  122478999999999999999864

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=97.46  E-value=8.1e-05  Score=43.15  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=22.2

Q ss_pred             ccEEEEEeeCCCC--CCCceEEeecCCCceecCCCCCC
Q 030038           99 EEWLCILTMDPEG--KQSQWEVLDCFGNRHRLLPLMPG  134 (184)
Q Consensus        99 ~~~lyv~gg~~~~--~~~~~~~ydp~t~~W~~lp~~p~  134 (184)
                      ++.||++||....  ..+.++.||+.+++|++++++|.
T Consensus        12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~   49 (49)
T PF13418_consen   12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS   49 (49)
T ss_dssp             TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred             CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence            4689999997542  35789999999999999988773

>PLN02772 guanylate kinase

Probab=97.27  E-value=0.0021  Score=53.44  Aligned_cols=60  Identities=20%  Similarity=0.256  Sum_probs=46.2

Q ss_pred             ccccEEEEEeeCCCC--CCCceEEeecCCCceecCC---CCCCCCccCeEEEEE-CCEEEEEeeeec
Q 030038           97 LLEEWLCILTMDPEG--KQSQWEVLDCFGNRHRLLP---LMPGPVKVGFGVVVI-NGKLVVMAGYSV  157 (184)
Q Consensus        97 ~~~~~lyv~gg~~~~--~~~~~~~ydp~t~~W~~lp---~~p~~~r~~~~~~~~-~~~lyv~GG~~~  157 (184)
                      ..+..+||+||..+.  ..+.+++||..++.|....   ..|.+ |.+|+++++ +++|+|+++...
T Consensus        32 ~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~-r~GhSa~v~~~~rilv~~~~~~   97 (398)
T PLN02772         32 TIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKP-CKGYSAVVLNKDRILVIKKGSA   97 (398)
T ss_pred             EECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCC-CCcceEEEECCceEEEEeCCCC
Confidence            356789999987553  2468999999999999865   33444 889998888 678999987643

>PLN02772 guanylate kinase

Probab=97.01  E-value=0.0014  Score=54.48  Aligned_cols=43  Identities=26%  Similarity=0.148  Sum_probs=35.2

Q ss_pred             ccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCC
Q 030038          137 KVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA  182 (184)
Q Consensus       137 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~  182 (184)
                      +.++.++++++++||+||...   .....+.|++||..|++|....
T Consensus        25 ~~~~tav~igdk~yv~GG~~d---~~~~~~~v~i~D~~t~~W~~P~   67 (398)
T PLN02772         25 KNRETSVTIGDKTYVIGGNHE---GNTLSIGVQILDKITNNWVSPI   67 (398)
T ss_pred             CCcceeEEECCEEEEEcccCC---CccccceEEEEECCCCcEeccc
Confidence            566788999999999999764   1235789999999999998643

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=96.77  E-value=0.00078  Score=55.59  Aligned_cols=38  Identities=18%  Similarity=0.467  Sum_probs=34.2

Q ss_pred             CCCCChHHHHHHHhccCC-ccchhhHhhcchhhhhhhcc
Q 030038           48 LLPGLPDDVAKCILALVP-RSNFPAMGTVCKKWRSFIRS   85 (184)
Q Consensus        48 ~~~~LP~dl~~~il~rlp-~~~~~~~~~Vsk~W~~l~~s   85 (184)
                      .|.+||+||+..|..+|| ..++.++++||++||+-+..
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            588999999999999996 67899999999999998753

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.0013  Score=52.69  Aligned_cols=41  Identities=17%  Similarity=0.401  Sum_probs=36.8

Q ss_pred             CCCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcchhh
Q 030038           48 LLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEF   88 (184)
Q Consensus        48 ~~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~   88 (184)
                      .|..||||+++.||+.|+.+++..+..|||+|+.+......
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l  137 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL  137 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence            47899999999999999999999999999999999765443

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.68  E-value=0.0078  Score=48.33  Aligned_cols=42  Identities=24%  Similarity=0.402  Sum_probs=35.8

Q ss_pred             CCCChHHHHHHHhccCC-----ccchhhHhhcchhhhhhhcchhhHH
Q 030038           49 LPGLPDDVAKCILALVP-----RSNFPAMGTVCKKWRSFIRSKEFIT   90 (184)
Q Consensus        49 ~~~LP~dl~~~il~rlp-----~~~~~~~~~Vsk~W~~l~~s~~~~~   90 (184)
                      |..||||++..||.++=     ..++.++.+|||.|+..+..+++..
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR  153 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWR  153 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHH
Confidence            45899999999997664     4788999999999999998888764

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=94.89  E-value=0.069  Score=41.00  Aligned_cols=65  Identities=14%  Similarity=0.083  Sum_probs=40.8

Q ss_pred             CceEEeecCCCceecCCCCCCC----Cc--cCeEEEE--ECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCC
Q 030038          114 SQWEVLDCFGNRHRLLPLMPGP----VK--VGFGVVV--INGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA  182 (184)
Q Consensus       114 ~~~~~ydp~t~~W~~lp~~p~~----~r--~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~  182 (184)
                      ..+.++||.|++|+.||+.+..    ..  .+++...  -+.||..+.....    ......+++|+..+++|+.+.
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~----~~~~~~~~Vys~~~~~Wr~~~   86 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG----NRNQSEHQVYTLGSNSWRTIE   86 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC----CCCCccEEEEEeCCCCccccc
Confidence            4588999999999999865431    01  1111111  1235665543321    113457999999999999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=94.72  E-value=0.02  Score=46.65  Aligned_cols=42  Identities=26%  Similarity=0.565  Sum_probs=37.3

Q ss_pred             CCCCCCh----HHHHHHHhccCCccchhhHhhcchhhhhhhcchhh
Q 030038           47 PLLPGLP----DDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEF   88 (184)
Q Consensus        47 ~~~~~LP----~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~   88 (184)
                      ..+..||    +++++.||+.|...++..+..|||.|+.++..+-+
T Consensus        73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~  118 (499)
T KOG0281|consen   73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGML  118 (499)
T ss_pred             HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchH
Confidence            3566889    99999999999999999999999999999987644

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=94.05  E-value=0.018  Score=49.10  Aligned_cols=83  Identities=14%  Similarity=0.146  Sum_probs=59.5

Q ss_pred             cccEEEEEeeCCC-CCCCceEEeecCCCceecCCC---CCCCCccCeEEEEECC--EEEEEeeeecCC--CCCCCCCeEE
Q 030038           98 LEEWLCILTMDPE-GKQSQWEVLDCFGNRHRLLPL---MPGPVKVGFGVVVING--KLVVMAGYSVID--GTASASADVY  169 (184)
Q Consensus        98 ~~~~lyv~gg~~~-~~~~~~~~ydp~t~~W~~lp~---~p~~~r~~~~~~~~~~--~lyv~GG~~~~~--~~~~~~~~v~  169 (184)
                      ..+++|+-||-+. .....++.|+-..+.|..+..   .|.. |.+|.++..-.  |+|++|-+.+..  .....-++.|
T Consensus       271 ~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~-RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW  349 (723)
T KOG2437|consen  271 QTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGA-RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFW  349 (723)
T ss_pred             CCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcc-hhhhhhhhhhhHhHHhhhhhccccccccccccccceE
Confidence            3569999998643 234678899999999998753   4555 77777766444  899999764421  0123456899


Q ss_pred             EEeCCCCCeecC
Q 030038          170 QYDSCLNRFGSV  181 (184)
Q Consensus       170 ~ydp~t~~W~~~  181 (184)
                      +||-.++.|..+
T Consensus       350 ~FDi~~~~W~~l  361 (723)
T KOG2437|consen  350 RFDIDTNTWMLL  361 (723)
T ss_pred             EEecCCceeEEe
Confidence            999999999865

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=93.73  E-value=0.1  Score=44.68  Aligned_cols=82  Identities=15%  Similarity=0.136  Sum_probs=55.4

Q ss_pred             ccEEEEEeeCCCC-------CCCceEEeecCCCceecCCCCCC-----CCccCeEEEEECCE--EEEEeeeecCCCCCCC
Q 030038           99 EEWLCILTMDPEG-------KQSQWEVLDCFGNRHRLLPLMPG-----PVKVGFGVVVINGK--LVVMAGYSVIDGTASA  164 (184)
Q Consensus        99 ~~~lyv~gg~~~~-------~~~~~~~ydp~t~~W~~lp~~p~-----~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~  164 (184)
                      +..||++|.+-+.       .-..++.||..++.|.-+.--..     ..-..|++++.+.+  |||+||+.-.. ....
T Consensus       324 ~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~-~e~~  402 (723)
T KOG2437|consen  324 RRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTC-NEPQ  402 (723)
T ss_pred             HhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccC-CCcc
Confidence            3468888865221       12568999999999998862111     11346777777766  99999985321 1234


Q ss_pred             CCeEEEEeCCCCCeecC
Q 030038          165 SADVYQYDSCLNRFGSV  181 (184)
Q Consensus       165 ~~~v~~ydp~t~~W~~~  181 (184)
                      ..-++.||..-..|..+
T Consensus       403 f~GLYaf~~~~~~w~~l  419 (723)
T KOG2437|consen  403 FSGLYAFNCQCQTWKLL  419 (723)
T ss_pred             ccceEEEecCCccHHHH
Confidence            56799999999999764

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=91.06  E-value=2.4  Score=33.96  Aligned_cols=64  Identities=13%  Similarity=0.057  Sum_probs=42.4

Q ss_pred             CceEEeecCCCceecCCCCCCCCccCeEEEEE-CCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCC
Q 030038          114 SQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVI-NGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA  182 (184)
Q Consensus       114 ~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~  182 (184)
                      ..++.||..+.+|..+..- .. -.-..+... +++|||.|-+...   ......+-.||..+++|..++
T Consensus        16 ~~lC~yd~~~~qW~~~g~~-i~-G~V~~l~~~~~~~Llv~G~ft~~---~~~~~~la~yd~~~~~w~~~~   80 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNG-IS-GTVTDLQWASNNQLLVGGNFTLN---GTNSSNLATYDFKNQTWSSLG   80 (281)
T ss_pred             CEEEEEECCCCEeecCCCC-ce-EEEEEEEEecCCEEEEEEeeEEC---CCCceeEEEEecCCCeeeecC
Confidence            4688999999999998742 11 011123334 6778887755431   224667899999999998764

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=90.42  E-value=2.4  Score=34.81  Aligned_cols=52  Identities=17%  Similarity=0.047  Sum_probs=36.5

Q ss_pred             ccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeee
Q 030038           99 EEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYS  156 (184)
Q Consensus        99 ~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~  156 (184)
                      +.+|+.....     ....+||..+..-..+|.++.+ ...-..+.++++||++....
T Consensus        76 gskIv~~d~~-----~~t~vyDt~t~av~~~P~l~~p-k~~pisv~VG~~LY~m~~~~  127 (342)
T PF07893_consen   76 GSKIVAVDQS-----GRTLVYDTDTRAVATGPRLHSP-KRCPISVSVGDKLYAMDRSP  127 (342)
T ss_pred             CCeEEEEcCC-----CCeEEEECCCCeEeccCCCCCC-CcceEEEEeCCeEEEeeccC
Confidence            4556555433     3378999999998888887765 33334566799999998653

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=89.53  E-value=1.9  Score=32.98  Aligned_cols=63  Identities=22%  Similarity=0.177  Sum_probs=42.2

Q ss_pred             CceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeec
Q 030038          114 SQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGS  180 (184)
Q Consensus       114 ~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~  180 (184)
                      ..+++|+..++.|+.+...+.........+.++|.||-+.....    ......+..||..+.+|+.
T Consensus        70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~----~~~~~~IvsFDl~~E~f~~  132 (230)
T TIGR01640        70 SEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLK----TNPDYFIVSFDVSSERFKE  132 (230)
T ss_pred             ccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECC----CCCcEEEEEEEcccceEee
Confidence            46789999999999988533221111124568999998864321    1112268899999999994

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=87.83  E-value=6.1  Score=27.34  Aligned_cols=79  Identities=15%  Similarity=0.192  Sum_probs=49.6

Q ss_pred             ccEEEEEeeCCCCCCCceEEeecCCCceecCCCC--CCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEE-eCCC
Q 030038           99 EEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLM--PGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQY-DSCL  175 (184)
Q Consensus        99 ~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~--p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~y-dp~t  175 (184)
                      ++.+|-+..........+.+||..+.+|+.++..  +........++..+|+|.++.-....   ....-++|+. |...
T Consensus         5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~---~~~~~~iWvLeD~~k   81 (129)
T PF08268_consen    5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQG---EPDSIDIWVLEDYEK   81 (129)
T ss_pred             CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCC---CcceEEEEEeecccc
Confidence            4556666554323346788999999999988742  22223455677789999887543210   1123466766 5667


Q ss_pred             CCeec
Q 030038          176 NRFGS  180 (184)
Q Consensus       176 ~~W~~  180 (184)
                      ++|.+
T Consensus        82 ~~Wsk   86 (129)
T PF08268_consen   82 QEWSK   86 (129)
T ss_pred             ceEEE
Confidence            88875

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=87.69  E-value=1.4  Score=34.51  Aligned_cols=57  Identities=12%  Similarity=0.114  Sum_probs=41.3

Q ss_pred             cccEEEEEeeCCCCCCCceEEeecCC----CceecCCC-CCCCCccCeEEEE-ECCEEEEEeeee
Q 030038           98 LEEWLCILTMDPEGKQSQWEVLDCFG----NRHRLLPL-MPGPVKVGFGVVV-INGKLVVMAGYS  156 (184)
Q Consensus        98 ~~~~lyv~gg~~~~~~~~~~~ydp~t----~~W~~lp~-~p~~~r~~~~~~~-~~~~lyv~GG~~  156 (184)
                      .++.+.+.||+.++ ...+..|+|..    ..|.+.+. |... |....+.. -||+++|+||..
T Consensus        76 ~dG~ll~tGG~~~G-~~~ir~~~p~~~~~~~~w~e~~~~m~~~-RWYpT~~~L~DG~vlIvGG~~  138 (243)
T PF07250_consen   76 PDGRLLQTGGDNDG-NKAIRIFTPCTSDGTCDWTESPNDMQSG-RWYPTATTLPDGRVLIVGGSN  138 (243)
T ss_pred             CCCCEEEeCCCCcc-ccceEEEecCCCCCCCCceECcccccCC-CccccceECCCCCEEEEeCcC
Confidence            45678888887653 35677888875    67988874 6665 76655555 589999999975

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=82.81  E-value=2.8  Score=32.86  Aligned_cols=60  Identities=15%  Similarity=0.197  Sum_probs=39.6

Q ss_pred             ceEEeecCCCceecCCCCCCCCccCe-EEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCC----CCeecCC
Q 030038          115 QWEVLDCFGNRHRLLPLMPGPVKVGF-GVVVINGKLVVMAGYSVIDGTASASADVYQYDSCL----NRFGSVA  182 (184)
Q Consensus       115 ~~~~ydp~t~~W~~lp~~p~~~r~~~-~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t----~~W~~~~  182 (184)
                      .-..||+.+++++.+... .. -.+. +...-+|.+.++||...      ....+..|+|.+    ..|.+.+
T Consensus        47 ~s~~yD~~tn~~rpl~v~-td-~FCSgg~~L~dG~ll~tGG~~~------G~~~ir~~~p~~~~~~~~w~e~~  111 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQ-TD-TFCSGGAFLPDGRLLQTGGDND------GNKAIRIFTPCTSDGTCDWTESP  111 (243)
T ss_pred             EEEEEecCCCcEEeccCC-CC-CcccCcCCCCCCCEEEeCCCCc------cccceEEEecCCCCCCCCceECc
Confidence            345899999999998743 22 1211 12235899999999743      245677888865    6787654

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=81.59  E-value=14  Score=30.29  Aligned_cols=48  Identities=19%  Similarity=0.186  Sum_probs=29.1

Q ss_pred             ceecCCCCCCCCcc------CeEEEEE-CCEEEEE-eeeecCCCCCCCCCeEEEEeCCCCCeecC
Q 030038          125 RHRLLPLMPGPVKV------GFGVVVI-NGKLVVM-AGYSVIDGTASASADVYQYDSCLNRFGSV  181 (184)
Q Consensus       125 ~W~~lp~~p~~~r~------~~~~~~~-~~~lyv~-GG~~~~~~~~~~~~~v~~ydp~t~~W~~~  181 (184)
                      .|+.+|+.|.....      -.+.+++ +..|||. -|.         ..-.+.||..+.+|+++
T Consensus       159 ~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~---------~~GTysfDt~~~~W~~~  214 (342)
T PF07893_consen  159 SWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR---------RWGTYSFDTESHEWRKH  214 (342)
T ss_pred             eEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCC---------ceEEEEEEcCCcceeec
Confidence            79999875543111      1234455 5567773 221         02368899999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-05
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-04
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	4e-04
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	6e-04
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	8e-04

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 117 EVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLN 176
           E  +        L  +  P   G    V+ G L  + G +      + S+ +  Y+   N
Sbjct: 42  EAYNPSNGTWLRLADLQVPRS-GLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100

Query: 177 RFGSVA 182
           ++   A
Sbjct: 101 QWSPCA 106

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 11/75 (14%)

Query: 104 ILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSV-IDGTA 162
              +D + K  +W  L             PG  +       I+G L V  G     +G  
Sbjct: 33  WYKLDTQAKDKKWTAL----------AAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLT 82

Query: 163 SASADVYQYDSCLNR 177
               DV++Y+   N 
Sbjct: 83  QVFNDVHKYNPKTNS 97

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 117 EVLDCFGNR-HRLLPLMPGPVKVGFGVVVINGKLVVMAGYSV--IDGTASASADVYQYDS 173
              D   N  +        P +    +V    ++ V+ G  V   +      +  +Q D+
Sbjct: 27  VAYDPMENECYLTALAEQIP-RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDN 85

Query: 174 CLNRFGSVA 182
             + +  + 
Sbjct: 86  VSSEWVGLP 94

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 4/53 (7%), Positives = 11/53 (20%), Gaps = 4/53 (7%)

Query: 117 EVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVY 169
              +        +       +     V  +  + ++ G            D Y
Sbjct: 27  RYFNPKDYSWTDIRCPFEK-RRDAACVFWDNVVYILGGS---QLFPIKRMDCY 75

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 117 EVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLN 176
           E  D    R   +  +P   +   G+V + G +  + G+   +G+      V  YD   +
Sbjct: 33  ECYDFKEERWHQVAELPSR-RCRAGMVYMAGLVFAVGGF---NGS-LRVRTVDSYDPVKD 87

Query: 177 RFGSVA 182
           ++ SVA
Sbjct: 88  QWTSVA 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.5
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.47
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.46
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.45
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.45
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.45
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.44
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.41
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.4
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.4
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.4
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.39
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.37
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.35
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.22
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.2
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.1
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.83
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.83
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.59
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.42
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.19
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.11
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.61
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.38
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	89.53
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	89.49
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	86.54

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.50  E-value=2.3e-14  Score=113.68  Aligned_cols=109  Identities=14%  Similarity=0.098  Sum_probs=86.2

Q ss_pred             hhhHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCC----CCCCCceEEeecCCCceecCCCCCCCCccCeEE
Q 030038           69 FPAMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDP----EGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGV  142 (184)
Q Consensus        69 ~~~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~----~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~  142 (184)
                      +..+....++|..+...+   ..|..++  ..++.||++||..    ......+++||+.+++|+.++++|.+ |.++++
T Consensus        69 ~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~  144 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLP---SPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV-VYGHTV  144 (315)
T ss_dssp             EEEEETTTTEEEECCCBS---SCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC-CBSCEE
T ss_pred             eEEecCCCCeEEECCCCC---cchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc-ccceeE
Confidence            445566778898875433   3444433  4678999999953    22357899999999999999999987 899999


Q ss_pred             EEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          143 VVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       143 ~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      ++++++|||+||...   .....+++++||+.+++|+.+++|
T Consensus       145 ~~~~~~iyv~GG~~~---~~~~~~~~~~yd~~~~~W~~~~~~  183 (315)
T 4asc_A          145 LSHMDLVYVIGGKGS---DRKCLNKMCVYDPKKFEWKELAPM  183 (315)
T ss_dssp             EEETTEEEEECCBCT---TSCBCCCEEEEETTTTEEEECCCC
T ss_pred             EEECCEEEEEeCCCC---CCcccceEEEEeCCCCeEEECCCC
Confidence            999999999999843   245688999999999999999876

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.47  E-value=3.6e-14  Score=111.87  Aligned_cols=110  Identities=13%  Similarity=0.078  Sum_probs=87.2

Q ss_pred             chhhHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEE
Q 030038           68 NFPAMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVI  145 (184)
Q Consensus        68 ~~~~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~  145 (184)
                      ++..+....++|..+...+   ..|..+.  ..++.||++||........+++||+.+++|..++++|.+ |.+++++++
T Consensus        25 ~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~  100 (306)
T 3ii7_A           25 SCRYFNPKDYSWTDIRCPF---EKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP-RDSLAACAA  100 (306)
T ss_dssp             SEEEEETTTTEEEECCCCS---CCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC-CBSCEEEEE
T ss_pred             eEEEecCCCCCEecCCCCC---cccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc-ccceeEEEE
Confidence            4445666778899875433   3344333  467889999997633357899999999999999999987 899999999


Q ss_pred             CCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          146 NGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       146 ~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +++|||+||...   .....+++++||+.+++|+.+++|
T Consensus       101 ~~~iyv~GG~~~---~~~~~~~~~~~d~~~~~W~~~~~~  136 (306)
T 3ii7_A          101 EGKIYTSGGSEV---GNSALYLFECYDTRTESWHTKPSM  136 (306)
T ss_dssp             TTEEEEECCBBT---TBSCCCCEEEEETTTTEEEEECCC
T ss_pred             CCEEEEECCCCC---CCcEeeeEEEEeCCCCceEeCCCC
Confidence            999999999863   245678999999999999998875

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.46  E-value=2.9e-14  Score=113.24  Aligned_cols=109  Identities=15%  Similarity=0.233  Sum_probs=85.7

Q ss_pred             hhhHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCC---CCCCceEEeecCCCceecCCCCCCCCccCeEEE
Q 030038           69 FPAMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPE---GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVV  143 (184)
Q Consensus        69 ~~~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~---~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~  143 (184)
                      +..+....++|..+...   ...|..++  ..++.||++||...   .....+++||+.+++|..++++|.+ |.+++++
T Consensus        80 ~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~  155 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPL---PSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK-VYGHNVI  155 (318)
T ss_dssp             EEEEETTTTEEEECSCB---SSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC-EESCEEE
T ss_pred             EEEEeCCCCcEEECCCC---CccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc-ccccEEE
Confidence            44566677899887533   33444433  46789999999642   2246789999999999999999987 8899999


Q ss_pred             EECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          144 VINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       144 ~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +++++|||+||...   .....+++++||+.+++|+.+++|
T Consensus       156 ~~~~~iyv~GG~~~---~~~~~~~~~~yd~~~~~W~~~~~~  193 (318)
T 2woz_A          156 SHNGMIYCLGGKTD---DKKCTNRVFIYNPKKGDWKDLAPM  193 (318)
T ss_dssp             EETTEEEEECCEES---SSCBCCCEEEEETTTTEEEEECCC
T ss_pred             EECCEEEEEcCCCC---CCCccceEEEEcCCCCEEEECCCC
Confidence            99999999999854   234678999999999999998765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.45  E-value=6e-14  Score=111.23  Aligned_cols=109  Identities=15%  Similarity=0.125  Sum_probs=85.0

Q ss_pred             chhhHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCC--CCCCceEEeecCCCceecCCCCCCCCccCeEEE
Q 030038           68 NFPAMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPE--GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVV  143 (184)
Q Consensus        68 ~~~~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~--~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~  143 (184)
                      ++..+....++|..+...+   ..|..+.  ..++.||++||...  .....+++||+.+++|..++++|.+ |.+++++
T Consensus       118 ~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~  193 (315)
T 4asc_A          118 SVMCYDRLSFKWGESDPLP---YVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA-RSLFGAT  193 (315)
T ss_dssp             CEEEEETTTTEEEECCCCS---SCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEE
T ss_pred             eEEEECCCCCcEeECCCCC---CcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCc-hhceEEE
Confidence            3444556677898875433   3344333  46778999999732  2257899999999999999999987 8899999


Q ss_pred             EECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          144 VINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       144 ~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +++++|||+||...    ....+++++||+.+++|+.+++|
T Consensus       194 ~~~~~iyv~GG~~~----~~~~~~~~~yd~~~~~W~~~~~~  230 (315)
T 4asc_A          194 VHDGRIIVAAGVTD----TGLTSSAEVYSITDNKWAPFEAF  230 (315)
T ss_dssp             EETTEEEEEEEECS----SSEEEEEEEEETTTTEEEEECCC
T ss_pred             EECCEEEEEeccCC----CCccceEEEEECCCCeEEECCCC
Confidence            99999999999864    23577999999999999998765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.45  E-value=5.7e-14  Score=110.55  Aligned_cols=108  Identities=15%  Similarity=0.181  Sum_probs=84.7

Q ss_pred             hhhHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCC-CCCceEEeecCCCceecCCCCCCCCccCeEEEEE
Q 030038           69 FPAMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEG-KQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVI  145 (184)
Q Consensus        69 ~~~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~-~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~  145 (184)
                      ...+....+.|..+...+   ..|..++  ..++.||++||.... ....+++||+.+++|..++++|.+ |.+++++++
T Consensus        32 ~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~  107 (302)
T 2xn4_A           32 VECYDFKEERWHQVAELP---SRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR-RSTLGAAVL  107 (302)
T ss_dssp             EEEEETTTTEEEEECCCS---SCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE
T ss_pred             EEEEcCcCCcEeEcccCC---cccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc-ccceEEEEE
Confidence            444556677898874333   2343333  457889999996432 346799999999999999999987 889999999


Q ss_pred             CCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          146 NGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       146 ~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +++|||+||...    ....+++++||+.+++|+.+++|
T Consensus       108 ~~~iyv~GG~~~----~~~~~~~~~~d~~~~~W~~~~~~  142 (302)
T 2xn4_A          108 NGLLYAVGGFDG----STGLSSVEAYNIKSNEWFHVAPM  142 (302)
T ss_dssp             TTEEEEEEEECS----SCEEEEEEEEETTTTEEEEECCC
T ss_pred             CCEEEEEcCCCC----CccCceEEEEeCCCCeEeecCCC
Confidence            999999999864    34568999999999999998875

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.45  E-value=3.7e-14  Score=112.19  Aligned_cols=110  Identities=18%  Similarity=0.202  Sum_probs=86.2

Q ss_pred             cchhhHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeC----CC-CCCCceEEeecCCCceecCCCCCCCCccC
Q 030038           67 SNFPAMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMD----PE-GKQSQWEVLDCFGNRHRLLPLMPGPVKVG  139 (184)
Q Consensus        67 ~~~~~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~----~~-~~~~~~~~ydp~t~~W~~lp~~p~~~r~~  139 (184)
                      .++..+....+.|..+...+   ..|..++  ..++.||++||.    .. .....+++||+.+++|..++++|.+ |.+
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~  114 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQ---VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP-RNR  114 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCS---SCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC-CBT
T ss_pred             ceEEEEcCCCCeEeECCCCC---cccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC-ccc
Confidence            34556677788999884333   2343332  457889999996    22 1246799999999999999999987 889


Q ss_pred             eEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          140 FGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       140 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +++++++++|||+||...    ....+++++||+.+++|+.+++|
T Consensus       115 ~~~~~~~~~iyv~GG~~~----~~~~~~~~~yd~~~~~W~~~~~~  155 (308)
T 1zgk_A          115 IGVGVIDGHIYAVGGSHG----CIHHNSVERYEPERDEWHLVAPM  155 (308)
T ss_dssp             CEEEEETTEEEEECCEET----TEECCCEEEEETTTTEEEECCCC
T ss_pred             cEEEEECCEEEEEcCCCC----CcccccEEEECCCCCeEeECCCC
Confidence            999999999999999864    34578899999999999999775

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.44  E-value=8.7e-14  Score=109.70  Aligned_cols=113  Identities=17%  Similarity=0.151  Sum_probs=86.2

Q ss_pred             chhhHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCC-C-CCCCceEEeecCCCceecCCCCCCCCccCeEEE
Q 030038           68 NFPAMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDP-E-GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVV  143 (184)
Q Consensus        68 ~~~~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~-~-~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~  143 (184)
                      .+..+....++|..+...+   ..|..+.  ..++.||++||.. . .....+++||+.+++|..++++|.+ |.+++++
T Consensus        71 ~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~  146 (306)
T 3ii7_A           71 RMDCYNVVKDSWYSKLGPP---TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ-RCSHGMV  146 (306)
T ss_dssp             EEEEEETTTTEEEEEECCS---SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC-CBSCEEE
T ss_pred             eEEEEeCCCCeEEECCCCC---ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC-cceeEEE
Confidence            4445666778898875432   3444333  4678899999964 2 2357899999999999999999987 8899999


Q ss_pred             EECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          144 VINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       144 ~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +++++|||+||...........+++++||+.+++|+.+++|
T Consensus       147 ~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  187 (306)
T 3ii7_A          147 EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM  187 (306)
T ss_dssp             EETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC
T ss_pred             EECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc
Confidence            99999999999864211112278999999999999998875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.41  E-value=1.2e-13  Score=108.55  Aligned_cols=109  Identities=19%  Similarity=0.269  Sum_probs=85.2

Q ss_pred             chhhHhhcchh---hhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCCC-CCceEEeecCCCceecCCCCCCCCccCeE
Q 030038           68 NFPAMGTVCKK---WRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEGK-QSQWEVLDCFGNRHRLLPLMPGPVKVGFG  141 (184)
Q Consensus        68 ~~~~~~~Vsk~---W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~~-~~~~~~ydp~t~~W~~lp~~p~~~r~~~~  141 (184)
                      ++..+....+.   |..+...+   ..|..++  ..++.||++||..... ...+++||+.+++|..++++|.+ |.+++
T Consensus        79 ~~~~~d~~~~~~~~W~~~~~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~  154 (301)
T 2vpj_A           79 SVECLDYTADEDGVWYSVAPMN---VRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-REGAG  154 (301)
T ss_dssp             CEEEEETTCCTTCCCEEECCCS---SCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-CBSCE
T ss_pred             eEEEEECCCCCCCeeEECCCCC---CCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-cccce
Confidence            34455566677   98885433   3444333  4578999999975432 46899999999999999999877 88999


Q ss_pred             EEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          142 VVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       142 ~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +++++++||++||...    ....+++++||+.+++|+.+++|
T Consensus       155 ~~~~~~~iyv~GG~~~----~~~~~~~~~~d~~~~~W~~~~~~  193 (301)
T 2vpj_A          155 LVVASGVIYCLGGYDG----LNILNSVEKYDPHTGHWTNVTPM  193 (301)
T ss_dssp             EEEETTEEEEECCBCS----SCBCCCEEEEETTTTEEEEECCC
T ss_pred             EEEECCEEEEECCCCC----CcccceEEEEeCCCCcEEeCCCC
Confidence            9999999999999864    34678999999999999998765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.40  E-value=1.9e-13  Score=107.34  Aligned_cols=109  Identities=12%  Similarity=0.179  Sum_probs=85.0

Q ss_pred             chhhHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCC-CCCceEEeecCCCc---eecCCCCCCCCccCeE
Q 030038           68 NFPAMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEG-KQSQWEVLDCFGNR---HRLLPLMPGPVKVGFG  141 (184)
Q Consensus        68 ~~~~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~-~~~~~~~ydp~t~~---W~~lp~~p~~~r~~~~  141 (184)
                      ++..+....+.|..+...+.   .|..++  ..++.||++||.... ....+++||+.+++   |+.++++|.+ |.+++
T Consensus        32 ~~~~~d~~~~~W~~~~~~p~---~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~-r~~~~  107 (301)
T 2vpj_A           32 VVEKYDPKTQEWSFLPSITR---KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR-RGLAG  107 (301)
T ss_dssp             CEEEEETTTTEEEECCCCSS---CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSC-CBSCE
T ss_pred             EEEEEcCCCCeEEeCCCCCh---hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCC-cccee
Confidence            34455667788988754332   343333  457889999997532 24679999999999   9999999987 89999


Q ss_pred             EEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          142 VVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       142 ~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +++++++|||+||...    ....+++++||+.+++|+.+++|
T Consensus       108 ~~~~~~~lyv~GG~~~----~~~~~~~~~~d~~~~~W~~~~~~  146 (301)
T 2vpj_A          108 ATTLGDMIYVSGGFDG----SRRHTSMERYDPNIDQWSMLGDM  146 (301)
T ss_dssp             EEEETTEEEEECCBCS----SCBCCEEEEEETTTTEEEEEEEC
T ss_pred             EEEECCEEEEEcccCC----CcccceEEEEcCCCCeEEECCCC
Confidence            9999999999999864    34578999999999999988654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.40  E-value=1.1e-12  Score=103.17  Aligned_cols=82  Identities=18%  Similarity=0.276  Sum_probs=70.4

Q ss_pred             cccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCC
Q 030038           98 LEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNR  177 (184)
Q Consensus        98 ~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~  177 (184)
                      .++.||++||........+++||+.+++|..++++|.+ |.++++++++++|||+||...    ....+++++||+.+++
T Consensus        14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~----~~~~~~~~~~d~~~~~   88 (302)
T 2xn4_A           14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSR-RCRAGMVYMAGLVFAVGGFNG----SLRVRTVDSYDPVKDQ   88 (302)
T ss_dssp             -CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEESCBCS----SSBCCCEEEEETTTTE
T ss_pred             CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcc-cccceEEEECCEEEEEeCcCC----CccccceEEECCCCCc
Confidence            45789999997554457799999999999999999987 889999999999999999863    3457899999999999


Q ss_pred             eecCCCC
Q 030038          178 FGSVAFY  184 (184)
Q Consensus       178 W~~~~~m  184 (184)
                      |+.+++|
T Consensus        89 W~~~~~~   95 (302)
T 2xn4_A           89 WTSVANM   95 (302)
T ss_dssp             EEEECCC
T ss_pred             eeeCCCC
Confidence            9998875

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.40  E-value=1.1e-12  Score=103.74  Aligned_cols=87  Identities=15%  Similarity=0.113  Sum_probs=71.6

Q ss_pred             ccccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCC
Q 030038           97 LLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLN  176 (184)
Q Consensus        97 ~~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~  176 (184)
                      ..++.||++||........+++||+.+++|..++++|.+ |.++++++++++|||+||...........+++++||+.++
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP-RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcc-cccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            457789999997433457899999999999999999987 8899999999999999998310002345789999999999


Q ss_pred             CeecCCCC
Q 030038          177 RFGSVAFY  184 (184)
Q Consensus       177 ~W~~~~~m  184 (184)
                      +|+.+++|
T Consensus       101 ~W~~~~~~  108 (308)
T 1zgk_A          101 QWSPCAPM  108 (308)
T ss_dssp             EEEECCCC
T ss_pred             eEeECCCC
Confidence            99999876

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.39  E-value=1.8e-13  Score=108.55  Aligned_cols=106  Identities=18%  Similarity=0.205  Sum_probs=82.4

Q ss_pred             hHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCC--CCCCceEEeecCCCceecCCCCCCCCccCeEEEEEC
Q 030038           71 AMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPE--GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVIN  146 (184)
Q Consensus        71 ~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~--~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~  146 (184)
                      .+....++|..+...+   ..|..++  ..++.||++||...  .....+++||+.+++|..++++|.+ |.++++++++
T Consensus       131 ~yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~  206 (318)
T 2woz_A          131 CYDPVAAKWSEVKNLP---IKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP-RSMFGVAIHK  206 (318)
T ss_dssp             EEETTTTEEEEECCCS---SCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEET
T ss_pred             EEeCCCCCEeECCCCC---CcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCC-cccceEEEEC
Confidence            3445667888775333   2343333  46788999998632  2246799999999999999999987 8889999999


Q ss_pred             CEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038          147 GKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       147 ~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      ++|||+||...    ....+++++||+.+++|+.+++|
T Consensus       207 ~~iyv~GG~~~----~~~~~~~~~yd~~~~~W~~~~~~  240 (318)
T 2woz_A          207 GKIVIAGGVTE----DGLSASVEAFDLKTNKWEVMTEF  240 (318)
T ss_dssp             TEEEEEEEEET----TEEEEEEEEEETTTCCEEECCCC
T ss_pred             CEEEEEcCcCC----CCccceEEEEECCCCeEEECCCC
Confidence            99999999864    23567999999999999998765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.37  E-value=2.5e-13  Score=109.24  Aligned_cols=107  Identities=15%  Similarity=0.022  Sum_probs=78.5

Q ss_pred             chhhhhhhcchhhHHHHHhhc--ccccEEEEEeeC-C--C---CCCCceEEeecCCCceecCCCCCCCCccCeEEEEECC
Q 030038           76 CKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMD-P--E---GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVING  147 (184)
Q Consensus        76 sk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~-~--~---~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~  147 (184)
                      .++|..+...+.  ..|..++  ..++.|||+||. .  .   .....+++||+.+++|..++++++.+|.+++++++++
T Consensus        42 ~~~W~~~~~~p~--~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~  119 (357)
T 2uvk_A           42 DKKWTALAAFPG--GPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNG  119 (357)
T ss_dssp             SCCEEECCCCTT--CCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETT
T ss_pred             CCCeeECCCCCC--CcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECC
Confidence            478988754331  2344333  467899999997 2  1   1246899999999999999999833488998888999


Q ss_pred             EEEEEeeeecCCC------------------------------CCCCCCeEEEEeCCCCCeecCCCC
Q 030038          148 KLVVMAGYSVIDG------------------------------TASASADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       148 ~lyv~GG~~~~~~------------------------------~~~~~~~v~~ydp~t~~W~~~~~m  184 (184)
                      +|||+||......                              .....+++++||+.+++|+.+++|
T Consensus       120 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~  186 (357)
T 2uvk_A          120 KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES  186 (357)
T ss_dssp             EEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCC
Confidence            9999999753100                              001358999999999999987654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.35  E-value=3.7e-12  Score=102.40  Aligned_cols=84  Identities=20%  Similarity=0.256  Sum_probs=68.8

Q ss_pred             cccEEEEEeeCCCCCCCceEEeecC--CCceecCCCCCCCCccCeEEEEECCEEEEEeee-ecCCCCCCCCCeEEEEeCC
Q 030038           98 LEEWLCILTMDPEGKQSQWEVLDCF--GNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGY-SVIDGTASASADVYQYDSC  174 (184)
Q Consensus        98 ~~~~lyv~gg~~~~~~~~~~~ydp~--t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~-~~~~~~~~~~~~v~~ydp~  174 (184)
                      .++.||++||...   ..+++||+.  +++|..++++|..+|.++++++++++|||+||. ....+.....+++++||+.
T Consensus        18 ~~~~iyv~GG~~~---~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~   94 (357)
T 2uvk_A           18 DNDTVYIGLGSAG---TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPK   94 (357)
T ss_dssp             ETTEEEEECGGGT---TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred             ECCEEEEEeCcCC---CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence            4788999999753   469999998  489999999994338999999999999999998 3111123467899999999


Q ss_pred             CCCeecCCCC
Q 030038          175 LNRFGSVAFY  184 (184)
Q Consensus       175 t~~W~~~~~m  184 (184)
                      +++|+++++|
T Consensus        95 ~~~W~~~~~~  104 (357)
T 2uvk_A           95 TNSWVKLMSH  104 (357)
T ss_dssp             TTEEEECSCC
T ss_pred             CCcEEECCCC
Confidence            9999999876

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.22  E-value=2.5e-11  Score=106.37  Aligned_cols=83  Identities=10%  Similarity=0.102  Sum_probs=69.9

Q ss_pred             cccEEEEEeeCCCCCCCceEEeecCCCceecCC-C-----CCCCCccCeEEEEE--CCEEEEEeeeecCCCCCCCCCeEE
Q 030038           98 LEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLP-L-----MPGPVKVGFGVVVI--NGKLVVMAGYSVIDGTASASADVY  169 (184)
Q Consensus        98 ~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp-~-----~p~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~v~  169 (184)
                      .++.||++||......+.+++||+.+++|..++ +     +|.+ |.+|+++++  +++|||+||....   ....++++
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~-R~~hs~~~~~~~~~lyv~GG~~~~---~~~~~dv~  471 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVA-RMCHTFTTISRNNQLLLIGGRKAP---HQGLSDNW  471 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCC-CBSCEEEEETTTTEEEEECCBSST---TCBCCCCE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCcc-ccceEEEEEccCCEEEEEcCCCCC---CCccccEE
Confidence            577899999975434578999999999999998 6     5665 889999999  9999999998642   23678999


Q ss_pred             EEeCCCCCeecCCCC
Q 030038          170 QYDSCLNRFGSVAFY  184 (184)
Q Consensus       170 ~ydp~t~~W~~~~~m  184 (184)
                      +||+.+++|+.+++|
T Consensus       472 ~yd~~t~~W~~~~~~  486 (695)
T 2zwa_A          472 IFDMKTREWSMIKSL  486 (695)
T ss_dssp             EEETTTTEEEECCCC
T ss_pred             EEeCCCCcEEECCCC
Confidence            999999999999876

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.20  E-value=8e-12  Score=109.54  Aligned_cols=108  Identities=10%  Similarity=0.099  Sum_probs=83.3

Q ss_pred             chhhHhhcchhhhhhh-cc--hhhHHHHHhhc--cc--ccEEEEEeeCCCC--CCCceEEeecCCCceecCCCCCCCCcc
Q 030038           68 NFPAMGTVCKKWRSFI-RS--KEFITVRKLLG--LL--EEWLCILTMDPEG--KQSQWEVLDCFGNRHRLLPLMPGPVKV  138 (184)
Q Consensus        68 ~~~~~~~Vsk~W~~l~-~s--~~~~~~r~~~~--~~--~~~lyv~gg~~~~--~~~~~~~ydp~t~~W~~lp~~p~~~r~  138 (184)
                      +...+....+.|..+. ..  ..+...|..++  ..  ++.|||+||....  ..+.+++||+.+++|..++++|.+ |.
T Consensus       413 ~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~-R~  491 (695)
T 2zwa_A          413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT-RF  491 (695)
T ss_dssp             CEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC-CB
T ss_pred             cEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC-cc
Confidence            3445566778898875 31  12333454443  45  8899999997542  257899999999999999999987 89


Q ss_pred             CeEEEEE-CCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCC
Q 030038          139 GFGVVVI-NGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAF  183 (184)
Q Consensus       139 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~  183 (184)
                      +++++++ +++|||+||....     .  ++++||+.+++|+.+++
T Consensus       492 ~h~~~~~~~~~iyv~GG~~~~-----~--~v~~yd~~t~~W~~~~~  530 (695)
T 2zwa_A          492 RHSACSLPDGNVLILGGVTEG-----P--AMLLYNVTEEIFKDVTP  530 (695)
T ss_dssp             SCEEEECTTSCEEEECCBCSS-----C--SEEEEETTTTEEEECCC
T ss_pred             cceEEEEcCCEEEEECCCCCC-----C--CEEEEECCCCceEEccC
Confidence            9999986 9999999998641     1  89999999999999875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.10  E-value=1.5e-10  Score=100.60  Aligned_cols=101  Identities=9%  Similarity=0.024  Sum_probs=76.7

Q ss_pred             hHhhcchhhhhhhcchhhHHHHHhh--c---ccccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEE
Q 030038           71 AMGTVCKKWRSFIRSKEFITVRKLL--G---LLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVI  145 (184)
Q Consensus        71 ~~~~Vsk~W~~l~~s~~~~~~r~~~--~---~~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~  145 (184)
                      .+....++|+.+...+   ..|..+  +   ..++.||++||...   ..+++||+.+++|..+++|+.. |..++++++
T Consensus       223 ~yd~~t~~w~~~~~~~---~~~~~~~~~~~~~~~g~lyv~GG~~~---~~v~~yd~~t~~W~~~~~~~~~-R~~~s~~~~  295 (656)
T 1k3i_A          223 SWDPSTGIVSDRTVTV---TKHDMFCPGISMDGNGQIVVTGGNDA---KKTSLYDSSSDSWIPGPDMQVA-RGYQSSATM  295 (656)
T ss_dssp             EECTTTCCBCCCEEEE---CSCCCSSCEEEECTTSCEEEECSSST---TCEEEEEGGGTEEEECCCCSSC-CSSCEEEEC
T ss_pred             EEeCCCCcEEeCcccC---CCCCCccccccCCCCCCEEEeCCCCC---CceEEecCcCCceeECCCCCcc-ccccceEEe
Confidence            3445667787764322   122222  1   25688999999754   3699999999999999999987 888988888


Q ss_pred             -CCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecC
Q 030038          146 -NGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSV  181 (184)
Q Consensus       146 -~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~  181 (184)
                       +|+|||+||...   .....+++++||+.+++|+.+
T Consensus       296 ~dg~iyv~GG~~~---~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          296 SDGRVFTIGGSWS---GGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             TTSCEEEECCCCC---SSSCCCCEEEEETTTTEEEEE
T ss_pred             cCCeEEEEeCccc---CCcccccceEeCCCCCcceeC
Confidence             999999999532   133678899999999999986

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.83  E-value=2.9e-09  Score=62.55  Aligned_cols=44  Identities=18%  Similarity=0.385  Sum_probs=38.1

Q ss_pred             CCCCCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcchhhH
Q 030038           46 SPLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFI   89 (184)
Q Consensus        46 ~~~~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~~   89 (184)
                      ...|..||+|++.+||++||..++.+++.|||+|+.++.++.+.
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW   49 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   49 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Confidence            45788999999999999999999999999999999999876653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.83  E-value=5.8e-09  Score=90.59  Aligned_cols=86  Identities=8%  Similarity=-0.043  Sum_probs=66.7

Q ss_pred             cccEEEEEeeCCCC----CCC---ceEEeecCCCceecCC--CCCCCCccCeEEEEE-CCEEEEEeeeecCC--CCCCCC
Q 030038           98 LEEWLCILTMDPEG----KQS---QWEVLDCFGNRHRLLP--LMPGPVKVGFGVVVI-NGKLVVMAGYSVID--GTASAS  165 (184)
Q Consensus        98 ~~~~lyv~gg~~~~----~~~---~~~~ydp~t~~W~~lp--~~p~~~r~~~~~~~~-~~~lyv~GG~~~~~--~~~~~~  165 (184)
                      .++.||++||....    ...   .+++||+.++.|..+.  +||.+ |..++++++ +++|||+||.....  +.....
T Consensus       409 ~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~-R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~  487 (656)
T 1k3i_A          409 VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA-RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV  487 (656)
T ss_dssp             TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC-CBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred             CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC-cccCCeEECCCCCEEEECCcccCcCcCCCCcc
Confidence            36889999995321    123   6789999999999986  88887 878887777 99999999975321  113457


Q ss_pred             CeEEEEeCCCCCeecCCCC
Q 030038          166 ADVYQYDSCLNRFGSVAFY  184 (184)
Q Consensus       166 ~~v~~ydp~t~~W~~~~~m  184 (184)
                      .++++||+.+++|+.+++|
T Consensus       488 ~~v~~ydp~t~~W~~~~~~  506 (656)
T 1k3i_A          488 FTPEIYVPEQDTFYKQNPN  506 (656)
T ss_dssp             CCCEEEEGGGTEEEECCCC
T ss_pred             cceEEEcCCCCceeecCCC
Confidence            8999999999999998875

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.59  E-value=2.7e-08  Score=78.46  Aligned_cols=50  Identities=20%  Similarity=0.425  Sum_probs=44.0

Q ss_pred             CCCCCCCCChHHHHHHHhccCCccchh-hHhhcchhhhhhhcchhhHHHHH
Q 030038           44 LDSPLLPGLPDDVAKCILALVPRSNFP-AMGTVCKKWRSFIRSKEFITVRK   93 (184)
Q Consensus        44 ~~~~~~~~LP~dl~~~il~rlp~~~~~-~~~~Vsk~W~~l~~s~~~~~~r~   93 (184)
                      +....+..||+|++.+||++||..++. ++++|||+|+.++.++.|...+.
T Consensus        46 ~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~   96 (297)
T 2e31_A           46 EAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKC   96 (297)
T ss_dssp             -CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHH
T ss_pred             ccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHh
Confidence            335688999999999999999999999 99999999999999988766543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.42  E-value=3.4e-05  Score=60.59  Aligned_cols=45  Identities=22%  Similarity=0.406  Sum_probs=40.1

Q ss_pred             CCCCCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcchhhHH
Q 030038           46 SPLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFIT   90 (184)
Q Consensus        46 ~~~~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~~~   90 (184)
                      ++.|..||+|++.+||+.|+..++.++..|||.|+.++.++.+.+
T Consensus         2 ~~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr   46 (312)
T 3l2o_B            2 ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWR   46 (312)
T ss_dssp             CCHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHH
T ss_pred             cchhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHH
Confidence            345678999999999999999999999999999999998877654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.19  E-value=0.00014  Score=57.21  Aligned_cols=42  Identities=19%  Similarity=0.402  Sum_probs=37.1

Q ss_pred             CCCCCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcchh
Q 030038           46 SPLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKE   87 (184)
Q Consensus        46 ~~~~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~   87 (184)
                      ...|..||+|++.+||.+|+..++.+++.|||+|+.++.++.
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~   47 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES   47 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence            567899999999999999999999999999999999975443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.11  E-value=0.00026  Score=57.73  Aligned_cols=41  Identities=20%  Similarity=0.358  Sum_probs=37.1

Q ss_pred             CCCCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcc-hh
Q 030038           47 PLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRS-KE   87 (184)
Q Consensus        47 ~~~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s-~~   87 (184)
                      ..|..||+|++.+||+.|+..++.++..|||.|+.++.+ +.
T Consensus        13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~   54 (464)
T 3v7d_B           13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTS   54 (464)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHH
T ss_pred             CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHH
Confidence            356789999999999999999999999999999999977 44

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.97  E-value=0.00065  Score=55.24  Aligned_cols=43  Identities=16%  Similarity=0.464  Sum_probs=38.2

Q ss_pred             CCCCCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcchhh
Q 030038           46 SPLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEF   88 (184)
Q Consensus        46 ~~~~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~   88 (184)
                      ...+..||+|++.+||++|+..++.++..|||+|+.++.+..+
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~   58 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL   58 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhH
Confidence            4468899999999999999999999999999999998876544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.63  E-value=0.0008  Score=54.67  Aligned_cols=43  Identities=23%  Similarity=0.451  Sum_probs=37.4

Q ss_pred             CCCCCChHH----HHHHHhccCCccchhhHhhcchhhhhhhcchhhH
Q 030038           47 PLLPGLPDD----VAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFI   89 (184)
Q Consensus        47 ~~~~~LP~d----l~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~~   89 (184)
                      ..+..||+|    ++.+||++|+..++.++..|||+|+.++.++.+.
T Consensus         9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w   55 (435)
T 1p22_A            9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLW   55 (435)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHH
T ss_pred             ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHH
Confidence            356679999    9999999999999999999999999998765543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.61  E-value=0.00064  Score=57.54  Aligned_cols=36  Identities=17%  Similarity=0.542  Sum_probs=28.9

Q ss_pred             CCCCCChHHHHHHHhccCC-ccchhhHhhcchhhhhh
Q 030038           47 PLLPGLPDDVAKCILALVP-RSNFPAMGTVCKKWRSF   82 (184)
Q Consensus        47 ~~~~~LP~dl~~~il~rlp-~~~~~~~~~Vsk~W~~l   82 (184)
                      ..|..||+|++.+||.+|| ..+..+++.|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4788999999999999999 88899999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.38  E-value=0.0054  Score=51.80  Aligned_cols=35  Identities=17%  Similarity=0.377  Sum_probs=31.6

Q ss_pred             CCCChHHHHHHHhccC-CccchhhHhhcchhhhhhh
Q 030038           49 LPGLPDDVAKCILALV-PRSNFPAMGTVCKKWRSFI   83 (184)
Q Consensus        49 ~~~LP~dl~~~il~rl-p~~~~~~~~~Vsk~W~~l~   83 (184)
                      ...||+|++.+||.+| +..+..+++.|||+|+.+.
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            3479999999999999 8889999999999999873

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=89.53  E-value=1.7  Score=32.87  Aligned_cols=67  Identities=21%  Similarity=0.210  Sum_probs=43.8

Q ss_pred             cccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCC
Q 030038           98 LEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLN  176 (184)
Q Consensus        98 ~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~  176 (184)
                      .++.||+-.|...  ...+..+|+.+.+-..--+++.. ..+.+++..+++||++...         .+.+++||+.|.
T Consensus        29 ~~~~LyestG~~g--~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~---------~~~v~v~D~~tl   95 (243)
T 3mbr_X           29 LRGHLYESTGETG--RSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWR---------NHEGFVYDLATL   95 (243)
T ss_dssp             ETTEEEEEECCTT--SCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESS---------SSEEEEEETTTT
T ss_pred             ECCEEEEECCCCC--CceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEee---------CCEEEEEECCcC
Confidence            3467888776532  25789999998765443334443 3456678889999997532         346777777654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=89.49  E-value=1.2  Score=34.17  Aligned_cols=68  Identities=12%  Similarity=-0.029  Sum_probs=43.4

Q ss_pred             cccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCC
Q 030038           98 LEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNR  177 (184)
Q Consensus        98 ~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~  177 (184)
                      .++.||+..|...  ...+..+|+.+.+-..--+++.. ..+-+++..+++||++...         .+.+++||+.|.+
T Consensus        51 ~~~~LyestG~~g--~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~---------~~~v~v~D~~t~~  118 (262)
T 3nol_A           51 RNGYFYESTGLNG--RSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWK---------NGLGFVWNIRNLR  118 (262)
T ss_dssp             ETTEEEEEEEETT--EEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESS---------SSEEEEEETTTCC
T ss_pred             ECCEEEEECCCCC--CceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEee---------CCEEEEEECccCc
Confidence            3567888877532  25688999998764332234432 3445577789999998532         3467777776543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=86.54  E-value=3.2  Score=31.74  Aligned_cols=65  Identities=17%  Similarity=0.038  Sum_probs=42.3

Q ss_pred             cEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCC
Q 030038          100 EWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLN  176 (184)
Q Consensus       100 ~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~  176 (184)
                      +.||+..|...  ...+..+|+.+++-..--+++.. ..+.+++..+++||+..-         ..+.+.+||+.|.
T Consensus        32 g~Lyvstg~~~--~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~g~~lyv~t~---------~~~~v~viD~~t~   96 (266)
T 2iwa_A           32 DTLFESTGLYG--RSSVRQVALQTGKVENIHKMDDS-YFGEGLTLLNEKLYQVVW---------LKNIGFIYDRRTL   96 (266)
T ss_dssp             TEEEEEECSTT--TCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEET---------TCSEEEEEETTTT
T ss_pred             CeEEEECCCCC--CCEEEEEECCCCCEEEEEecCCC-cceEEEEEeCCEEEEEEe---------cCCEEEEEECCCC
Confidence            68998876432  26799999998764432223322 244567777889999753         2356888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.55
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.28
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.0
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.87
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.23
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.04
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.82

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7e-15  Score=112.49  Aligned_cols=85  Identities=15%  Similarity=0.117  Sum_probs=71.9

Q ss_pred             ccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCe
Q 030038           99 EEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRF  178 (184)
Q Consensus        99 ~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W  178 (184)
                      .+.||++||........+++||+.+++|..++++|.+ |.+|++++++++|||+||...........+++++||+.+++|
T Consensus         4 g~~iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w   82 (288)
T d1zgka1           4 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP-RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW   82 (288)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CCEEEEECCcCCCCCceEEEEECCCCeEEECCCCCCc-cceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccc
Confidence            4579999998665567899999999999999999987 899999999999999999753211234578999999999999


Q ss_pred             ecCCCC
Q 030038          179 GSVAFY  184 (184)
Q Consensus       179 ~~~~~m  184 (184)
                      +.+++|
T Consensus        83 ~~~~~~   88 (288)
T d1zgka1          83 SPCAPM   88 (288)
T ss_dssp             EECCCC
T ss_pred             cccccc
Confidence            999876

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.1e-12  Score=95.35  Aligned_cols=83  Identities=17%  Similarity=0.219  Sum_probs=70.2

Q ss_pred             ccccEEEEEeeCCCC-CCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCC
Q 030038           97 LLEEWLCILTMDPEG-KQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCL  175 (184)
Q Consensus        97 ~~~~~lyv~gg~~~~-~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t  175 (184)
                      .....||++||.... .....+.||..+++|..++++|.+ |.++++++++++|||+||.+.    ....+++++||+.+
T Consensus       193 ~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-r~~~~~~~~~~~l~v~GG~~~----~~~~~~v~~yd~~~  267 (288)
T d1zgka1         193 VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR-RSALGITVHQGRIYVLGGYDG----HTFLDSVECYDPDT  267 (288)
T ss_dssp             EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEETTEEEEECCBCS----SCBCCEEEEEETTT
T ss_pred             ceeeeEEEecCccccccccceeeeeecceeeecccCccCc-ccceEEEEECCEEEEEecCCC----CeecceEEEEECCC
Confidence            346779999886533 246789999999999999998887 889999999999999999863    45678999999999


Q ss_pred             CCeecCCCC
Q 030038          176 NRFGSVAFY  184 (184)
Q Consensus       176 ~~W~~~~~m  184 (184)
                      ++|+++++|
T Consensus       268 ~~W~~~~~~  276 (288)
T d1zgka1         268 DTWSEVTRM  276 (288)
T ss_dssp             TEEEEEEEC
T ss_pred             CEEEECCCC
Confidence            999998765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.00  E-value=5.3e-10  Score=88.03  Aligned_cols=102  Identities=9%  Similarity=-0.003  Sum_probs=74.6

Q ss_pred             HhhcchhhhhhhcchhhHHHHHh--hc---ccccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEE-
Q 030038           72 MGTVCKKWRSFIRSKEFITVRKL--LG---LLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVI-  145 (184)
Q Consensus        72 ~~~Vsk~W~~l~~s~~~~~~r~~--~~---~~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~-  145 (184)
                      ......+|..+....   ..|..  .+   ..++.+|++|+...   ..+.+||+.+++|..++.|+.. |..++++++ 
T Consensus        57 yd~~t~~w~~~~~~~---~~~~~~~~~~~~~~~g~i~v~Gg~~~---~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~  129 (387)
T d1k3ia3          57 WDPSTGIVSDRTVTV---TKHDMFCPGISMDGNGQIVVTGGNDA---KKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMS  129 (387)
T ss_dssp             ECTTTCCBCCCEEEE---CSCCCSSCEEEECTTSCEEEECSSST---TCEEEEEGGGTEEEECCCCSSC-CSSCEEEECT
T ss_pred             EECCCCcEeecCCCC---CCcccceeEEEEecCCcEEEeecCCC---cceeEecCccCccccccccccc-ccccceeeec
Confidence            445567787654321   11211  12   24678898887643   5689999999999999999987 777777765 


Q ss_pred             CCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCC
Q 030038          146 NGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAF  183 (184)
Q Consensus       146 ~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~  183 (184)
                      +|+||++||...   .....+++++||+.+++|+.++.
T Consensus       130 dG~v~v~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~  164 (387)
T d1k3ia3         130 DGRVFTIGGSWS---GGVFEKNGEVYSPSSKTWTSLPN  164 (387)
T ss_dssp             TSCEEEECCCCC---SSSCCCCEEEEETTTTEEEEETT
T ss_pred             CCceeeeccccc---cccccceeeeecCCCCceeecCC
Confidence            789999999754   23457899999999999998765

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.8e-10  Score=61.52  Aligned_cols=39  Identities=21%  Similarity=0.462  Sum_probs=36.0

Q ss_pred             CCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcchh
Q 030038           49 LPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKE   87 (184)
Q Consensus        49 ~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~   87 (184)
                      +..||+|++.+||++||..++.+++.|||+|+.++.++.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~   39 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES   39 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Confidence            468999999999999999999999999999999987654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.87  E-value=1e-09  Score=86.32  Aligned_cols=74  Identities=11%  Similarity=-0.025  Sum_probs=56.9

Q ss_pred             cccEEEEEeeCCCC-------CCCceEEeecCCCceecCCCCCCCCccCeEEEEE--CCEEEEEeeeecCCCCCCCCCeE
Q 030038           98 LEEWLCILTMDPEG-------KQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVI--NGKLVVMAGYSVIDGTASASADV  168 (184)
Q Consensus        98 ~~~~lyv~gg~~~~-------~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~v  168 (184)
                      .++.||++||....       ....+++|||.+++|..+++|+.+ |..|+++++  +|+|||+||..... ......++
T Consensus       298 ~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~-R~~Hs~a~l~~dG~v~v~GG~~~~~-~~~~~~~~  375 (387)
T d1k3ia3         298 PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV-RVYHSISLLLPDGRVFNGGGGLCGD-CTTNHFDA  375 (387)
T ss_dssp             TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC-CCTTEEEEECTTSCEEEEECCCCTT-CSCCCCEE
T ss_pred             cCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCc-ccceEEEEECCCCEEEEEeCCCcCC-CCcccceE
Confidence            36689999985321       134689999999999999999987 888887777  89999999953321 22346789


Q ss_pred             EEEeC
Q 030038          169 YQYDS  173 (184)
Q Consensus       169 ~~ydp  173 (184)
                      |+|||
T Consensus       376 e~y~P  380 (387)
T d1k3ia3         376 QIFTP  380 (387)
T ss_dssp             EEEEC
T ss_pred             EEEcc
Confidence            99998

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.7e-07  Score=59.04  Aligned_cols=47  Identities=15%  Similarity=0.417  Sum_probs=41.5

Q ss_pred             CCCCCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcchhhHHHH
Q 030038           46 SPLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVR   92 (184)
Q Consensus        46 ~~~~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~~~~r   92 (184)
                      ...|..||+||+.+||++|+..++.++++|||+|+.++.++.+....
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~   62 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK   62 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            35778899999999999999999999999999999999887765443

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.04  E-value=7.6e-07  Score=57.44  Aligned_cols=42  Identities=19%  Similarity=0.357  Sum_probs=36.4

Q ss_pred             CCCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcc-hhhH
Q 030038           48 LLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRS-KEFI   89 (184)
Q Consensus        48 ~~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s-~~~~   89 (184)
                      .+..||+||+.+||+.|+..++.+++.|||+|+.++.+ +.+.
T Consensus         5 ~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LW   47 (100)
T d1nexb1           5 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLW   47 (100)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHH
T ss_pred             chhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence            45679999999999999999999999999999998854 4443

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.5e-06  Score=55.76  Aligned_cols=43  Identities=26%  Similarity=0.502  Sum_probs=36.8

Q ss_pred             CCCCCh----HHHHHHHhccCCccchhhHhhcchhhhhhhcchhhHH
Q 030038           48 LLPGLP----DDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFIT   90 (184)
Q Consensus        48 ~~~~LP----~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~~~   90 (184)
                      .+..||    +||+.+||+.|+..++.++.+|||+|+.++.++.+..
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk   56 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWK   56 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred             HHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            344566    6999999999999999999999999999998766544