Citrus Sinensis ID: 030045

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHEEARVDDTDEVLLVNVNSQEIESPSQ
Secondary Structure (PSIPRED)
ccccEEEEEEEEEcccHHHHHHHHHcccccccccccccEEEEEEEEccccccccEEEEEEEEccccccEEEEEEEEEcccccEEEEEEEEcEEccccEEEEEEEEEEEEcccccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEEccHHHHHHHHHcccccccccccccEEEEEEEEcccccccEEEEEEEEccccccEEEEEEEEEEcccccEEEEEEEEccHHHHHcEEEEEEEEEEEcccccccEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccccccc
Coil and Loop (DISEMBL)
MSLAGELEAVIEVKASADKVHEvfscrphivtsispqsvqsceliegewgkpgavICWTftryagnpQIVKELIevvddenyITIFKLIEGNVLEMLYKSFCSVAKvtqkddheggslvRFTYKYekqnenvpdlESKVLEMMIDIVKNIDAYIIQheearvddtdeVLLVNVNsqeiespsq
Flexible Loop (DISEMBL)
MSLAGELEAVIEVKASADKVHEVFSCRPHivtsispqsvQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKvtqkddheggslvrftykyekqnenvpdleSKVLEMMIDIVKNIDAYIIQHeearvddtdeVLLVNvnsqeiespsq
Low Complexity Region (SEG)
MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHEEARVDDTDEVLLVNVNSQEIESPSQ
Disordered region (IsUnstruct)
********AVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHEEARVDDTDEVLLVNV**********
Disordered Region (DISOPRED)
****GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHEEARVDDTDEVLLVNVNS********
Disordered Region (DISEMBL)
MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHEEARVDDTDEVLLVNVNS********
Disordered Region (DISPRO)
*SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHEEARVDDTDEVLLVNVNS********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHEEARVDDTDEVLLVNVNSQEIESPSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q941R6	171	MLP-like protein 31 OS=Ar	yes	no	0.836	0.894	0.394	6e-25
Q9SSK9	335	MLP-like protein 28 OS=Ar	no	no	0.841	0.459	0.379	7e-25
Q9SSK5	158	MLP-like protein 43 OS=Ar	no	no	0.836	0.968	0.388	2e-24
Q9SSK7	316	MLP-like protein 34 OS=Ar	no	no	0.814	0.471	0.374	2e-23
Q9C7I7	152	MLP-like protein 165 OS=A	no	no	0.792	0.953	0.326	2e-20
P85524	150	Kirola OS=Actinidia delic	N/A	no	0.803	0.98	0.313	3e-18
Q9C7I3	151	MLP-like protein 168 OS=A	no	no	0.748	0.907	0.342	3e-15
Q9ZVF3	151	MLP-like protein 328 OS=A	no	no	0.808	0.980	0.272	1e-10
Q9ZVF2	151	MLP-like protein 329 OS=A	no	no	0.808	0.980	0.265	1e-09
Q93VR4	155	MLP-like protein 423 OS=A	no	no	0.836	0.987	0.283	4e-09

>sp|Q941R6|MLP31_ARATH MLP-like protein 31 OS=Arabidopsis thaliana GN=MLP31 PE=1 SV=2

 Score =  113 bits (283), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 4/157 (2%)

Query: 2   SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
           SL G+LE  IE+KASA K H +F+ RPH V+  +P  +Q CEL EG+WGK G+++ W + 
Sbjct: 19  SLCGKLETDIEIKASAGKFHHMFAGRPHHVSKATPGKIQGCELHEGDWGKVGSIVFWNYV 78

Query: 62  RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
            + G  ++ KE IE V+ E  +  F++IEG++L+  YKSF    +VT K     GS+V +
Sbjct: 79  -HDGEAKVAKERIEAVEPEKNLITFRVIEGDLLKE-YKSFVITIQVTPKRGGP-GSVVHW 135

Query: 122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE 158
             +YEK ++ V   E+  L+  +++ K ID +++  E
Sbjct: 136 HVEYEKIDDKVAHPET-FLDFCVEVSKEIDEHLLNEE 171

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSK9|MLP28_ARATH MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28 PE=1 SV=1

 Score =  113 bits (282), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 101/158 (63%), Gaps = 4/158 (2%)

Query: 2   SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
           SL G+LE  +E+KASADK H +F+ +PH V+  SP ++Q C+L EG+WG  G+++ W + 
Sbjct: 21  SLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV 80

Query: 62  RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
            + G  ++ KE IE V+ +  +  F++IEG++++  YKSF    +VT K     GS+V +
Sbjct: 81  -HDGEAKVAKERIEAVEPDKNLITFRVIEGDLMKE-YKSFLLTIQVTPKPGGP-GSIVHW 137

Query: 122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHEE 159
             +YEK +E V   E+ +L+  +++ K ID +++  EE
Sbjct: 138 HLEYEKISEEVAHPET-LLQFCVEVSKEIDEHLLAEEE 174

Can bind steroids (in vitro), and may also bind other types of hydrophobic ligands.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSK5|MLP43_ARATH MLP-like protein 43 OS=Arabidopsis thaliana GN=MLP43 PE=2 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 95/157 (60%), Gaps = 4/157 (2%)

Query: 2   SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
           SL G+LE  +E+KASA K H +F+ RPH V+  +P  +  CEL EG+WGK G+++ W + 
Sbjct: 6   SLVGKLETEVEIKASAKKFHHMFTERPHHVSKATPDKIHGCELHEGDWGKVGSIVIWKYV 65

Query: 62  RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
            + G   + K  IE VD E  +  FK++EG+++   YKSF    +VT K   E GS+  +
Sbjct: 66  -HDGKLTVGKNKIEAVDPEKNLITFKVLEGDLMNE-YKSFAFTLQVTPKQG-ESGSIAHW 122

Query: 122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE 158
             +YEK +E V   E+ +L+  ++I K ID +++  E
Sbjct: 123 HLEYEKISEEVAHPET-LLQFCVEISKEIDEHLLAEE 158

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSK7|MLP34_ARATH MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP34 PE=2 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 101/155 (65%), Gaps = 6/155 (3%)

Query: 2   SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
           SL G+LE  +E+KASA + H +F+ +PH V+  SP ++QSC+L EG+WG  G+++ W + 
Sbjct: 8   SLVGKLETEVEIKASAGQFHHMFAGKPHHVSKASPGNIQSCDLHEGDWGTVGSIVFWNYV 67

Query: 62  RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEG-GSLVR 120
            + G  ++ KE IE V+ E  +  F++IEG++++  YKSF    +VT K  H G GS+V 
Sbjct: 68  -HDGEAKVAKERIEAVEPEKNLITFRVIEGDLMKE-YKSFLITIQVTPK--HGGPGSIVH 123

Query: 121 FTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYII 155
           +  +YEK ++ V   E+ +L+  +++ + ID +++
Sbjct: 124 WHLEYEKISDEVAHPET-LLQFCVEVSQEIDEHLL 157

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7I7|ML165_ARATH MLP-like protein 165 OS=Arabidopsis thaliana GN=MLP165 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 90/150 (60%), Gaps = 5/150 (3%)

Query: 6   ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAG 65
           E+E  +++K  ADK H+      H+  +     ++ C+L+EGEWGK G+++ W    + G
Sbjct: 5   EIEVDVDIKTRADKFHKFIRRSQHVPKAT--HYIKGCDLLEGEWGKVGSILLWKLV-FDG 61

Query: 66  NPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKY 125
            P++ K++IEV+D+E  +   +++EG  L+  YKSF    KV        GS+V++  KY
Sbjct: 62  EPRVSKDMIEVIDEEKNVIQLRVLEGP-LKKEYKSFLKTMKVMSPKHGGPGSVVKWNMKY 120

Query: 126 EKQNENVPDLESKVLEMMIDIVKNIDAYII 155
           E+ ++NV D  +++L+  +++ K ID Y++
Sbjct: 121 ERIDQNV-DHPNRLLQFFVEVTKEIDQYLL 149

Arabidopsis thaliana (taxid: 3702)

>sp|P85524|KIRO_ACTDE Kirola OS=Actinidia deliciosa PE=1 SV=1

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 93/153 (60%), Gaps = 6/153 (3%)

Query: 1   MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTF 60
           M L+G++   +E+ +     +E+F  R ++++ +SP ++Q  +L+EG WG  G+VI + +
Sbjct: 1   MDLSGKMVKQVEILSDGIVFYEIFRYRLYLISEMSPVNIQGVDLLEGNWGTVGSVIFFKY 60

Query: 61  TRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVR 120
           T   G  +  K+++E +D+E     FK++EG+++E LYK+F  + +V  K +H     V 
Sbjct: 61  T-IDGKEKTAKDIVEAIDEETKSVTFKIVEGDLME-LYKTFIIIVQVDTKGEHNS---VT 115

Query: 121 FTYKYEKQNENVPDLESKVLEMMIDIVKNIDAY 153
           +T+ YEK  E+V +  + ++   I+I K+I+ Y
Sbjct: 116 WTFHYEKLKEDVEE-PNTLMNFCIEITKDIETY 147

Actinidia deliciosa (taxid: 3627)

>sp|Q9C7I3|ML168_ARATH MLP-like protein 168 OS=Arabidopsis thaliana GN=MLP168 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 86/143 (60%), Gaps = 6/143 (4%)

Query: 13  VKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKE 72
           +K++ADK   +FS R     S + + VQ C+L+EGEWG+ G+++ W  T   G P++ K+
Sbjct: 12  IKSTADKFF-MFSRRSQ-HASKATRYVQGCDLLEGEWGEVGSILLWKLT-VDGEPKVSKD 68

Query: 73  LIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENV 132
           +IE +D +  +  ++++EG + E  Y  F    KV+ K     GS+V++  KYE+ +E V
Sbjct: 69  MIEAIDMKMNMIQWRVLEGPLKEE-YNIFSKTMKVSPKQGGS-GSVVKWNLKYERIDEKV 126

Query: 133 PDLESKVLEMMIDIVKNIDAYII 155
             LE ++L+  ++ V  ID Y++
Sbjct: 127 AHLE-RLLQFFVECVNEIDQYLL 148

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVF3|ML328_ARATH MLP-like protein 328 OS=Arabidopsis thaliana GN=MLP328 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 84/158 (53%), Gaps = 10/158 (6%)

Query: 1   MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTF 60
           M+ +G     + +K SA+K ++ +    H+        +Q   + +GEW   GA+  W +
Sbjct: 1   MATSGTYVTEVPLKGSAEKHYKRWRSENHLFPDAIGHHIQGVTIHDGEWDSHGAIKIWNY 60

Query: 61  TRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQK--DDHEGGSL 118
           T   G P++ KE  E +DDEN    F+ +EG+V+E L K +  + +  QK  DD     +
Sbjct: 61  T-CDGKPEVFKERRE-IDDENMAVTFRGLEGHVMEQL-KVYDVIFQFIQKSPDD----II 113

Query: 119 VRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ 156
            + T  +EKQN+++P+  S  ++ +  +  ++D ++++
Sbjct: 114 CKITMIWEKQNDDMPE-PSNYMKFVKSLAADMDDHVLK 150

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVF2|ML329_ARATH MLP-like protein 329 OS=Arabidopsis thaliana GN=MLP329 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 84/158 (53%), Gaps = 10/158 (6%)

Query: 1   MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTF 60
           M+ +G     + +K SADK ++ +    H+        +Q   + +GEW    A+  W +
Sbjct: 1   MATSGTYVTEVPLKGSADKHYKRWRDENHLFPDAIGHHIQGVTVHDGEWDSHEAIKIWNY 60

Query: 61  TRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQK--DDHEGGSL 118
           T   G P++ KE  E +DDEN +  F+ +EG+V+E L K +  + + +QK  DD     +
Sbjct: 61  T-CDGKPEVFKERKE-IDDENMVITFRGLEGHVMEQL-KVYDLIYQFSQKSPDD----IV 113

Query: 119 VRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ 156
            + T  +EK+ ++ P+  S  ++ +  +V ++D ++++
Sbjct: 114 CKITMIWEKRTDDSPE-PSNYMKFLKSVVADMDEHVLK 150

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VR4|ML423_ARATH MLP-like protein 423 OS=Arabidopsis thaliana GN=MLP423 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 9/162 (5%)

Query: 1   MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTF 60
           M L+G L   +EVK+ A+K         ++     P   ++ +++ G+   PG++   T+
Sbjct: 1   MGLSGVLHVEVEVKSPAEKFWVALGDGINLFPKAFPNDYKTIQVLAGDGNAPGSIRLITY 60

Query: 61  TRYAGNP--QIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSL 118
               G+P  +I  E IE VD EN    + +I G +LE  YK+F     V  KD   GGSL
Sbjct: 61  GE--GSPLVKISAERIEAVDLENKSMSYSIIGGEMLEY-YKTFKGTITVIPKD---GGSL 114

Query: 119 VRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHEEA 160
           ++++ ++EK    + D    + +  +   K ID Y+++   A
Sbjct: 115 LKWSGEFEKTAHEIDD-PHVIKDFAVKNFKEIDEYLLKQTSA 155

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
224111490	158	predicted protein [Populus trichocarpa]	0.825	0.955	0.458	3e-31
255587428	151	Major latex protein, putative [Ricinus c	0.819	0.993	0.442	9e-31
255590991	151	Major latex protein, putative [Ricinus c	0.819	0.993	0.448	5e-30
13172242	156	major latex-like protein [Prunus persica	0.797	0.935	0.406	5e-26
255587426	151	Major latex protein, putative [Ricinus c	0.819	0.993	0.384	5e-24
354620271	157	MLP [Gossypium barbadense]	0.825	0.961	0.387	6e-24
297737681	311	unnamed protein product [Vitis vinifera]	0.819	0.482	0.384	2e-23
359472855	151	PREDICTED: MLP-like protein 28-like [Vit	0.819	0.993	0.384	2e-23
297808825	164	bet v I allergen family protein [Arabido	0.836	0.932	0.394	2e-23
225424272	151	PREDICTED: MLP-like protein 28 [Vitis vi	0.819	0.993	0.384	2e-23

>gi|224111490|ref|XP_002315876.1| predicted protein [Populus trichocarpa] gi|222864916|gb|EEF02047.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 107/157 (68%), Gaps = 6/157 (3%)

Query: 1   MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTF 60
           M+L G++EA +E+K SA+  H++FSCRPH V+++SP  +Q+ +L EGEWGKPG VICW++
Sbjct: 1   MTLFGKMEAEVEIKVSAETFHDIFSCRPHHVSNMSPAKIQNVDLHEGEWGKPGTVICWSY 60

Query: 61  TRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVR 120
             + G  +  KE+IE +DDE   T FK+IEG++    YK+F  + + T K   EG  L  
Sbjct: 61  V-HDGVAKTAKEVIEAIDDEKLSTTFKVIEGDIT-TEYKNFIIIVQATPKG--EGSCLAH 116

Query: 121 FTYKYEKQNENVPDLESKVLEMMIDIVKNI-DAYIIQ 156
           +T++YEK NENVPD ++ +LE  I   K+I D ++ Q
Sbjct: 117 WTFEYEKLNENVPDPQT-LLEFCIHCSKDIEDHHLTQ 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587428|ref|XP_002534267.1| Major latex protein, putative [Ricinus communis] gi|223525605|gb|EEF28116.1| Major latex protein, putative [Ricinus communis]

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 110/156 (70%), Gaps = 6/156 (3%)

Query: 1   MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTF 60
           M+L+G++EA +++K SADK H+V   RPH +T  SPQ +Q+C+L +GE+G+ G+VICW +
Sbjct: 1   MALSGKVEADVKIKTSADKFHDVMGGRPHHMTIASPQKLQTCDLHDGEFGRKGSVICWNY 60

Query: 61  TRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVR 120
             + G  ++ KEL+E +DD N  T FK+IEG++L+  YKSF  V + T + +   GS V 
Sbjct: 61  V-HDGKAKVAKELVEDIDDVNMSTTFKVIEGDILKE-YKSFKFVVQATPQGE---GSTVH 115

Query: 121 FTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ 156
           +  +YEK N N+P+  S +LE ++D+ K+IDA+++Q
Sbjct: 116 WILEYEKLNANIPEPTS-LLEFVVDLTKDIDAHLVQ 150

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255590991|ref|XP_002535412.1| Major latex protein, putative [Ricinus communis] gi|223523187|gb|EEF26971.1| Major latex protein, putative [Ricinus communis]

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 107/156 (68%), Gaps = 6/156 (3%)

Query: 1   MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTF 60
           M+L+G++E  +E+K SADK H+V   RPH +T  SPQ++Q+C+L EGE+GK G+V+ W +
Sbjct: 1   MALSGKMEVDVEIKTSADKFHDVMGGRPHHMTIASPQNIQTCDLHEGEFGKKGSVLYWNY 60

Query: 61  TRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVR 120
             + G  ++ KE++E +DD N  T FK+IEG++L+  YKSF  V + T K     GS+V 
Sbjct: 61  V-HDGKAKVAKEVVEDIDDVNMSTTFKVIEGDLLKE-YKSFKFVVQATPKGK---GSIVH 115

Query: 121 FTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ 156
           +T  YEK N N+P+  S +LE  +D+ K+IDA++ Q
Sbjct: 116 WTLVYEKLNANIPEPTS-MLEFAVDVTKDIDAHLAQ 150

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13172242|gb|AAK14060.1|AF239177_1 major latex-like protein [Prunus persica]

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 99/150 (66%), Gaps = 4/150 (2%)

Query: 5   GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA 64
           G++E  +E+KA A K HEVF+ RPH ++++S  ++Q C+L EGEWG  G+V+ W +  + 
Sbjct: 6   GKVETDVEIKAPATKFHEVFTHRPHHISNVSSNNIQGCDLHEGEWGTVGSVVYWNYF-HD 64

Query: 65  GNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYK 124
           G  ++ KELIE +D E  +  FK+IEG++LE  YKSF      T K  H  GS+V +T +
Sbjct: 65  GKAKVAKELIEAIDAEKNLITFKVIEGDLLEH-YKSFKITIHATPK-AHGQGSIVHWTME 122

Query: 125 YEKQNENVPDLESKVLEMMIDIVKNIDAYI 154
           YEK + ++ D  + +L+  +D+ K++DA++
Sbjct: 123 YEKHHGDIEDPHT-LLQFAVDVSKDVDAHL 151

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587426|ref|XP_002534266.1| Major latex protein, putative [Ricinus communis] gi|223525604|gb|EEF28115.1| Major latex protein, putative [Ricinus communis]

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 101/156 (64%), Gaps = 6/156 (3%)

Query: 1   MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTF 60
           M+L+G++EA +E+K SA K H+V   RPH +T  SP+  Q+C+L +GE+G+ G+++ W +
Sbjct: 1   MALSGKIEADVEIKTSAGKFHDVMGGRPHHLTIASPEKFQTCDLHKGEFGRKGSILYWNY 60

Query: 61  TRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVR 120
             + G  ++ K+++E +DD N    +K IEG+V++  YKS   V +   K +   GS V 
Sbjct: 61  V-HDGIAKVAKQIVEDIDDVNMSATYKFIEGDVMKE-YKSAKLVVQAIPKGE---GSTVH 115

Query: 121 FTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ 156
           +  +YEK N ++PD  S +LE ++D  K+IDA++ Q
Sbjct: 116 WILEYEKLNADIPDPTS-LLEFVVDFTKDIDAHLAQ 150

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|354620271|gb|AER29899.1| MLP [Gossypium barbadense]

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 101/155 (65%), Gaps = 4/155 (2%)

Query: 2   SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
           +L G+LEA +E+KAS ++ HE+F+ +PH V       +Q C+L EGEWGK G ++ W++ 
Sbjct: 5   ALTGKLEADVEIKASPEQFHEMFAHKPHHVHHTCYDKIQGCDLHEGEWGKVGTIVHWSYV 64

Query: 62  RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
            + G  +  KE++E VD +  +  F++IEG+++E  YKSF    +V+ K +   GSLV +
Sbjct: 65  -HDGKAKKAKEVVEAVDPDKNLVTFRVIEGDLMEE-YKSFVITIQVSPKSE-GSGSLVHW 121

Query: 122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ 156
           T +YEK++  +   E+ +L+ + DI K+IDA++ Q
Sbjct: 122 TLEYEKRHGGIAHPET-LLQFVQDISKDIDAHLTQ 155

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737681|emb|CBI26882.3| unnamed protein product [Vitis vinifera]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 95/156 (60%), Gaps = 6/156 (3%)

Query: 1   MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTF 60
           M L G+L+A   + A ADK HE+FSCRPH ++++ P+ +Q   L EGEWG  G VI W +
Sbjct: 161 MGLVGKLQAETLIVAPADKFHEMFSCRPHHISNVCPEKIQKVNLHEGEWGTSGYVIEWNY 220

Query: 61  TRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVR 120
               GN  + K+++E+ D EN    +K IEG++L+  YKSF  V +   K D    + V 
Sbjct: 221 N-IDGNDHVAKQIVEITDGENKSITYKFIEGDLLKK-YKSFIIVVQTIPKGD---ATWVH 275

Query: 121 FTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ 156
           +T +YEK N+++P    K LE ++ + + +D +++Q
Sbjct: 276 WTLEYEKLNKDIPT-PIKELEFLVLVGEGVDDHLVQ 310

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472855|ref|XP_003631204.1| PREDICTED: MLP-like protein 28-like [Vitis vinifera]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 95/156 (60%), Gaps = 6/156 (3%)

Query: 1   MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTF 60
           M L G+L+A   + A ADK HE+FSCRPH ++++ P+ +Q   L EGEWG  G VI W +
Sbjct: 1   MGLVGKLQAETLIVAPADKFHEMFSCRPHHISNVCPEKIQKVNLHEGEWGTSGYVIEWNY 60

Query: 61  TRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVR 120
               GN  + K+++E+ D EN    +K IEG++L+  YKSF  V +   K D    + V 
Sbjct: 61  -NIDGNDHVAKQIVEITDGENKSITYKFIEGDLLKK-YKSFIIVVQTIPKGD---ATWVH 115

Query: 121 FTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ 156
           +T +YEK N+++P    K LE ++ + + +D +++Q
Sbjct: 116 WTLEYEKLNKDIP-TPIKELEFLVLVGEGVDDHLVQ 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808825|ref|XP_002872296.1| bet v I allergen family protein [Arabidopsis lyrata subsp. lyrata] gi|297318133|gb|EFH48555.1| bet v I allergen family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 99/157 (63%), Gaps = 4/157 (2%)

Query: 2   SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
           SL GE+E  +++KA A K + V++ RP  V   +   VQ+C+L+EGEWG  G+++ W + 
Sbjct: 12  SLWGEVEVEVDIKAPAAKFYHVYAGRPDHVAKATSSKVQACDLLEGEWGIVGSIVNWNYV 71

Query: 62  RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
            YAG  ++ KE IE+V+ E  +  F++IEG+VL  +YKSF    +VT K+  E GS+V++
Sbjct: 72  -YAGKAKVAKERIEIVEPEKKLIKFRVIEGDVL-AVYKSFLITIRVTPKEG-EVGSVVKW 128

Query: 122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE 158
             +YEK +ENVP      L  + ++ K ID +++  E
Sbjct: 129 HLEYEKNDENVPH-PYNFLPFLAEMTKEIDEHLLSEE 164

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424272|ref|XP_002284570.1| PREDICTED: MLP-like protein 28 [Vitis vinifera]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 97/156 (62%), Gaps = 6/156 (3%)

Query: 1   MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTF 60
           M L G+L+A   + ASADK HE+F CRPH ++++ P  +Q   L EGEWG  G+VI W +
Sbjct: 1   MGLIGKLQAETLIMASADKFHEIFWCRPHHISNVCPAKIQKVHLHEGEWGTSGSVIQWHY 60

Query: 61  TRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVR 120
               GN  + KE++E +D+EN    FK+IEG++++  YKSF  + +   K D    + V 
Sbjct: 61  N-IDGNDHVAKEIVEAIDEENKSVTFKVIEGDLMKE-YKSFRIIVQAIPKGD---ATYVH 115

Query: 121 FTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ 156
           +T +YEK N++V     K+L  ++ + ++ID +++Q
Sbjct: 116 WTLEYEKLNKDVL-APIKILGFVVHVSEDIDDHLVQ 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2014000	335	MLP28 "AT1G70830" [Arabidopsis	0.890	0.486	0.382	1.3e-27
TAIR|locus:2013930	316	MLP34 "AT1G70850" [Arabidopsis	0.803	0.465	0.392	9.4e-27
TAIR|locus:2013970	171	MLP31 "AT1G70840" [Arabidopsis	0.836	0.894	0.394	1.9e-26
TAIR|locus:2013950	158	MLP43 "AT1G70890" [Arabidopsis	0.836	0.968	0.388	2.5e-26
TAIR|locus:2143809	166	AT5G28010 "AT5G28010" [Arabido	0.836	0.921	0.382	6.6e-26
TAIR|locus:2143804	164	AT5G28000 "AT5G28000" [Arabido	0.836	0.932	0.369	5.9e-25
TAIR|locus:2013920	159	AT1G70880 "AT1G70880" [Arabido	0.830	0.955	0.367	6.1e-23
TAIR|locus:2206737	152	MLP165 "AT1G35260" [Arabidopsi	0.803	0.967	0.331	1.3e-22
TAIR|locus:2201195	160	AT1G23130 "AT1G23130" [Arabido	0.814	0.931	0.383	1.1e-21
UNIPROTKB|P85524	150	P85524 "Kirola" [Actinidia del	0.803	0.98	0.313	6.3e-21

TAIR|locus:2014000 MLP28 "AT1G70830" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 65/170 (38%), Positives = 110/170 (64%)

Query:     2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
             SL G+LE  +E+KASADK H +F+ +PH V+  SP ++Q C+L EG+WG  G+++ W + 
Sbjct:    21 SLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV 80

Query:    62 RYAGNPQIVKELIEVVD-DENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVR 120
              + G  ++ KE IE V+ D+N IT F++IEG++++  YKSF    +VT K    G S+V 
Sbjct:    81 -HDGEAKVAKERIEAVEPDKNLIT-FRVIEGDLMKE-YKSFLLTIQVTPKPGGPG-SIVH 136

Query:   121 FTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYII-QHEEARVDDTDEVL 169
             +  +YEK +E V   E+ +L+  +++ K ID +++ + EE +  +T  ++
Sbjct:   137 WHLEYEKISEEVAHPET-LLQFCVEVSKEIDEHLLAEEEEVKTPETPSLV 185

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2013930 MLP34 "AT1G70850" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 60/153 (39%), Positives = 100/153 (65%)

Query:     7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGN 66
             LE  +E+KASA+K H +F+ +PH V+  +P ++QSC+L EG+WG  G+++ W +  + G 
Sbjct:   169 LETEVEIKASAEKFHHMFAGKPHHVSKATPGNIQSCDLHEGDWGTVGSIVFWNYV-HDGE 227

Query:    67 PQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEG-GSLVRFTYKY 125
              ++ KE IE VD E  +  F++IEG++++  YKSF    +VT K  H G GS+V + ++Y
Sbjct:   228 AKVAKERIEAVDPEKNLITFRVIEGDLMKE-YKSFVITIQVTPK--HGGSGSVVHWHFEY 284

Query:   126 EKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE 158
             EK NE V   E+ +L+  +++ K ID +++  E
Sbjct:   285 EKINEEVAHPET-LLQFAVEVSKEIDEHLLAEE 316

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2013970 MLP31 "AT1G70840" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 62/157 (39%), Positives = 98/157 (62%)

Query:     2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
             SL G+LE  IE+KASA K H +F+ RPH V+  +P  +Q CEL EG+WGK G+++ W + 
Sbjct:    19 SLCGKLETDIEIKASAGKFHHMFAGRPHHVSKATPGKIQGCELHEGDWGKVGSIVFWNYV 78

Query:    62 RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
              + G  ++ KE IE V+ E  +  F++IEG++L+  YKSF    +VT K    G S+V +
Sbjct:    79 -HDGEAKVAKERIEAVEPEKNLITFRVIEGDLLKE-YKSFVITIQVTPKRGGPG-SVVHW 135

Query:   122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE 158
               +YEK ++ V   E+  L+  +++ K ID +++  E
Sbjct:   136 HVEYEKIDDKVAHPET-FLDFCVEVSKEIDEHLLNEE 171

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2013950 MLP43 "AT1G70890" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 61/157 (38%), Positives = 95/157 (60%)

Query:     2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
             SL G+LE  +E+KASA K H +F+ RPH V+  +P  +  CEL EG+WGK G+++ W + 
Sbjct:     6 SLVGKLETEVEIKASAKKFHHMFTERPHHVSKATPDKIHGCELHEGDWGKVGSIVIWKYV 65

Query:    62 RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
              + G   + K  IE VD E  +  FK++EG+++   YKSF    +VT K   E GS+  +
Sbjct:    66 -HDGKLTVGKNKIEAVDPEKNLITFKVLEGDLMNE-YKSFAFTLQVTPKQG-ESGSIAHW 122

Query:   122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE 158
               +YEK +E V   E+ +L+  ++I K ID +++  E
Sbjct:   123 HLEYEKISEEVAHPET-LLQFCVEISKEIDEHLLAEE 158

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2143809 AT5G28010 "AT5G28010" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 60/157 (38%), Positives = 100/157 (63%)

Query:     2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
             SL G+LE  +E+KA A   + +++ RPH V   +P++VQSC+L +GEWG  G+++ W + 
Sbjct:    14 SLLGKLEVEVEIKAPAAIFYHIYAGRPHHVAKATPRNVQSCDLHDGEWGTVGSIVYWNYV 73

Query:    62 RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
              + G  ++ KE IE+V+ E  +  F++IEG+V+   YKSF    +VT K+   G S+V++
Sbjct:    74 -HEGQAKVAKERIELVEPEKKLIKFRVIEGDVMAE-YKSFLITIQVTPKEGGTG-SVVKW 130

Query:   122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE 158
               +YEK +ENVP  E+ +L    ++ K ID +++  E
Sbjct:   131 HIEYEKIDENVPHPEN-LLPFFAEMTKEIDEHLLSEE 166

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2143804 AT5G28000 "AT5G28000" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 58/157 (36%), Positives = 98/157 (62%)

Query:     2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
             SL GE+E  +++K+ A+K ++V+  RP  V   +   VQ+C+L+EGEWG   +++ W + 
Sbjct:    12 SLWGEVEVEVDIKSPAEKFYQVYVGRPDHVAKATSSKVQACDLLEGEWGTISSIVNWNYV 71

Query:    62 RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
              YAG  ++ KE IE+V+ E  +  F++IEG+VL + YK+F     VT K+   G S+ ++
Sbjct:    72 -YAGKAKVAKERIELVEPEKKLIKFRVIEGDVLAV-YKNFFITISVTPKEGGVG-SVAKW 128

Query:   122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE 158
               +YEK + NVPD E+  L  + ++ K ID +++  E
Sbjct:   129 HLEYEKNDVNVPDPEN-FLPFLAEMTKEIDEHLLSEE 164

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2013920 AT1G70880 "AT1G70880" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 58/158 (36%), Positives = 102/158 (64%)

Query:     2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
             SL G +E  +E+K+S +K H++   RPH +++ +P ++QS EL EGE G+ GAVI W + 
Sbjct:     7 SLVGIVETTVELKSSVEKFHDLLVGRPHHMSNATPSNIQSAELQEGEMGQVGAVILWNYV 66

Query:    62 RYAGNPQIVKELIEVVDDE-NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVR 120
              + G  +  K+ IE +D E N IT ++++EG++L+  Y SF +  +VT K+  E GS+  
Sbjct:    67 -HDGEAKSAKQRIESLDPEKNRIT-YRVVEGDLLKE-YTSFVTTFQVTPKEG-EPGSVAH 122

Query:   121 FTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE 158
             + ++YEK NE V   E+ +L++  ++ K++D +++  E
Sbjct:   123 WHFEYEKINEEVAHPET-LLQLATEVSKDMDEHLLSEE 159

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2206737 MLP165 "AT1G35260" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 51/154 (33%), Positives = 93/154 (60%)

Query:     6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAG 65
             E+E  +++K  ADK H+      H+  +     ++ C+L+EGEWGK G+++ W    + G
Sbjct:     5 EIEVDVDIKTRADKFHKFIRRSQHVPKAT--HYIKGCDLLEGEWGKVGSILLWKLV-FDG 61

Query:    66 NPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEG-GSLVRFTYK 124
              P++ K++IEV+D+E  +   +++EG  L+  YKSF    KV     H G GS+V++  K
Sbjct:    62 EPRVSKDMIEVIDEEKNVIQLRVLEGP-LKKEYKSFLKTMKV-MSPKHGGPGSVVKWNMK 119

Query:   125 YEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE 158
             YE+ ++NV D  +++L+  +++ K ID Y++  +
Sbjct:   120 YERIDQNV-DHPNRLLQFFVEVTKEIDQYLLSKD 152

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2201195 AT1G23130 "AT1G23130" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 59/154 (38%), Positives = 91/154 (59%)

Query:     2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
             SL GELE  IE+KASA K H + S RP  V   +P  +Q C L EGE+GK G+VI W + 
Sbjct:     9 SLQGELEVDIEIKASAKKFHHMLSGRPQDVAKATPD-IQGCALHEGEFGKVGSVIFWNYA 67

Query:    62 RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
                G P++ +E IE VD E  + + ++I+G++ +  +KSF    + T K     GS+V+ 
Sbjct:    68 -IDGQPKVARERIEAVDQEKNLLVLRVIDGDLTKE-FKSFLVTIQATPKL-RGPGSVVKC 124

Query:   122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYII 155
               KYE+ +E V   E K+LE+   + +++D  ++
Sbjct:   125 HLKYERIDEKVAPPE-KLLELFAKLTESMDEMLL 157

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|P85524 P85524 "Kirola" [Actinidia deliciosa (taxid:3627)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 48/153 (31%), Positives = 93/153 (60%)

Query:     1 MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTF 60
             M L+G++   +E+ +     +E+F  R ++++ +SP ++Q  +L+EG WG  G+VI + +
Sbjct:     1 MDLSGKMVKQVEILSDGIVFYEIFRYRLYLISEMSPVNIQGVDLLEGNWGTVGSVIFFKY 60

Query:    61 TRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVR 120
             T   G  +  K+++E +D+E     FK++EG+++E LYK+F  + +V  K +H     V 
Sbjct:    61 T-IDGKEKTAKDIVEAIDEETKSVTFKIVEGDLME-LYKTFIIIVQVDTKGEHNS---VT 115

Query:   121 FTYKYEKQNENVPDLESKVLEMMIDIVKNIDAY 153
             +T+ YEK  E+V +  + ++   I+I K+I+ Y
Sbjct:   116 WTFHYEKLKEDVEE-PNTLMNFCIEITKDIETY 147

GO:0016068 "type I hypersensitivity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q941R6	MLP31_ARATH	No assigned EC number	0.3949	0.8360	0.8947	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_X1001 hypothetical protein (158 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
pfam00407	150	pfam00407, Bet_v_1, Pathogenesis-related protein B	6e-40
smart01037	151	smart01037, Bet_v_1, Pathogenesis-related protein	3e-35
cd07816	148	cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai	2e-33
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	2e-04
cd07812	141	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/Cox	9e-04

>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score =  132 bits (334), Expect = 6e-40
 Identities = 60/155 (38%), Positives = 100/155 (64%), Gaps = 5/155 (3%)

Query: 3   LAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTR 62
           L G+LE  +E+K SADK ++ F    H++    P  +Q  E+ EGEWG  G++  WT+T 
Sbjct: 1   LVGKLETEVEIKVSADKFYKAFKLEDHLIPKAIPHHIQGVEVHEGEWGTGGSIKKWTYT- 59

Query: 63  YAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFT 122
             G P++VKE IE  D++N    + ++EG+VLE  YKSF +  +V  K +  GGS+V++T
Sbjct: 60  EDGKPKVVKERIEADDEKNKTITYSVLEGDVLE-DYKSFITTLQVIPKSN--GGSIVKWT 116

Query: 123 YKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQH 157
            +YEK  ++VP+ E K L+ ++ + K+I+A+++ +
Sbjct: 117 IEYEKIGDDVPEPE-KYLKFVVKLTKDIEAHLLAN 150

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150

>gnl|CDD|198105 smart01037, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score =  120 bits (303), Expect = 3e-35
 Identities = 58/155 (37%), Positives = 96/155 (61%), Gaps = 5/155 (3%)

Query: 2   SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
           +L+G LE  + +K SA+K  + F  R H     +   +Q  +L EG+WG  G++  W +T
Sbjct: 1   ALSGTLETEVPIKGSAEKFFKRFVSRNHHFPKATGHHIQGVDLHEGDWGSHGSIKIWNYT 60

Query: 62  RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
              G  ++ KE IE VDDE     F+++EG+V+E  YKSF    +VT K    GGS+V++
Sbjct: 61  -VDGKEEVFKERIEAVDDEKKTITFRVLEGDVMEE-YKSFKGTIQVTPKS--GGGSVVKW 116

Query: 122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ 156
           T +YEK NE+VP+ E K ++ ++++ K+ID ++++
Sbjct: 117 TLEYEKINEDVPEPE-KYMDFVVELTKDIDEHLLK 150

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10.- Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 151

>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

 Score =  115 bits (290), Expect = 2e-33
 Identities = 51/149 (34%), Positives = 81/149 (54%), Gaps = 5/149 (3%)

Query: 5   GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA 64
           G LE  +E+K  A+K+ + F    H++    P  ++S EL+EG+ G PG++   TF    
Sbjct: 1   GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-GGPGSIKLITFGP-G 58

Query: 65  GNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYK 124
           G  + VKE I+ VD+EN    + +IEG+VL+  YKS+    K   K D  GG +V++T +
Sbjct: 59  GKVKYVKERIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGD--GGCVVKWTIE 116

Query: 125 YEKQNENVPDLESKVLEMMIDIVKNIDAY 153
           YEK+ +  P  E ++       +K   A 
Sbjct: 117 YEKKGDAEPP-EEEIKAGKEKALKMFKAV 144

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear; however, they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup, including Bet v 1, have in vitro RNase activity, the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However, its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome. Length = 148

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 20/142 (14%)

Query: 8   EAVIEVKASADKVHEVFS--CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY-- 63
              + + A ADKV  + S     H        +V SCEL  G     GAV      R   
Sbjct: 4   TVSVTIDAPADKVWALLSDFGGLHK----WHPAVASCELEGGG-PGVGAV------RTVT 52

Query: 64  AGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTY 123
             +   V+E +  +DD      ++++EG    +  K++ +  +VT + D  GG+ V +T 
Sbjct: 53  LKDGGTVRERLLALDDAERRYSYRIVEGP---LPVKNYVATIRVTPEGD--GGTRVTWTA 107

Query: 124 KYEKQNENVPDLESKVLEMMID 145
           +++       +L    L  +  
Sbjct: 108 EFDPPEGLTDELARAFLTGVYR 129

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

>gnl|CDD|176854 cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

 Score = 37.7 bits (87), Expect = 9e-04
 Identities = 25/152 (16%), Positives = 55/152 (36%), Gaps = 15/152 (9%)

Query: 7   LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGN 66
           +EA IE+ A  + V ++ S         SP  ++  E++ G  G  GA     F      
Sbjct: 1   VEASIEIPAPPEAVWDLLSDPERWP-EWSP-GLERVEVLGGGEGGVGA----RFVGGRKG 54

Query: 67  PQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYE 126
            + +    EV + +        + G    +       +     + + +GG+ V +T +Y+
Sbjct: 55  GRRLTLTSEVTEVDPPRPGRFRVTGGGGGVDGTGEWRL-----EPEGDGGTRVTYTVEYD 109

Query: 127 KQN----ENVPDLESKVLEMMIDIVKNIDAYI 154
                       L   +   +  +++ + A +
Sbjct: 110 PPGPLLKVFALLLAGALKRELAALLRALKARL 141

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	100.0
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	100.0
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.73
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.58
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.51
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.45
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.45
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.36
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.29
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.23
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.23
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	99.22
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.11
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	99.11
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	99.1
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	99.09
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	99.09
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	99.07
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	99.06
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	99.01
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	98.99
PRK10724	158	hypothetical protein; Provisional	98.9
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	98.76
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	98.44
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	98.41
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.38
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.38
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	98.25
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	98.25
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.22
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	98.19
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	98.19
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	98.03
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	98.03
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	98.02
COG5637	217	Predicted integral membrane protein [Function unkn	97.99
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	97.89
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	97.87
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	97.64
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	97.55
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	97.51
COG3832	149	Uncharacterized conserved protein [Function unknow	97.44
cd08863	141	SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-	96.64
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	96.48
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	96.42
cd08905	209	START_STARD1-like Cholesterol-binding START domain	96.37
cd08874	205	START_STARD9-like C-terminal START domain of mamma	96.32
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	96.02
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	95.75
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	95.56
cd08871	222	START_STARD10-like Lipid-binding START domain of m	95.19
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	94.84
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	94.58
cd00177	193	START Lipid-binding START domain of mammalian STAR	94.53
cd08906	209	START_STARD3-like Cholesterol-binding START domain	94.4
cd08913	240	START_STARD14-like Lipid-binding START domain of m	93.4
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	91.97
cd08914	236	START_STARD15-like Lipid-binding START domain of m	90.97
smart00234	206	START in StAR and phosphatidylcholine transfer pro	90.7
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	90.48
COG4276	153	Uncharacterized conserved protein [Function unknow	88.88
cd08867	206	START_STARD4_5_6-like Lipid-binding START domain o	88.87
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	88.81
cd08872	235	START_STARD11-like Ceramide-binding START domain o	86.04
PF05952	57	ComX: Bacillus competence pheromone ComX; InterPro	85.93

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=100.00  E-value=5.4e-43  Score=273.57  Aligned_cols=151  Identities=39%  Similarity=0.679  Sum_probs=138.7

Q ss_pred             CcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCc
Q 030045            2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDEN   81 (183)
Q Consensus         2 ~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~   81 (183)
                      |++++++.|+++++||+|+|+++++.++++||++|+.|++|+++|||||..||||.|+|. ++++.+++|||++.+|++|
T Consensus         1 m~~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~-~~~~~~~~Kekve~~D~~~   79 (151)
T PF00407_consen    1 MGVGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFG-PGGPFKYVKEKVEAIDEEN   79 (151)
T ss_dssp             SCEEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEE-TTSSEEEEEEEEEEEETTT
T ss_pred             CCcEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEec-CCCCcceeEEEEEeecCCC
Confidence            578999999999999999999999877799999999999999999995444599999999 8998899999999999999


Q ss_pred             eEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhC
Q 030045           82 YITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus        82 ~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~~  157 (183)
                      |+++|++|||++|+ .|++|.+++++.|. + +|||+++|+++|+++++..++|+. +++++..|+|+||+||++|
T Consensus        80 ~~~~y~viEGd~l~-~~~~~~~~~~~~~~-~-~g~~v~k~t~~Ye~~~~~~~~p~~-~~~~~~~~~K~ieayLlan  151 (151)
T PF00407_consen   80 KTITYTVIEGDVLG-DYKSFKSTIQKIPK-G-DGGCVVKWTIEYEKKGEDVPPPEK-YLDFAVGMFKAIEAYLLAN  151 (151)
T ss_dssp             TEEEEEEEEETTGT-TTEEEEEEEEEEEE-T-TSCEEEEEEEEEEESSTSCHHHHH-HHHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEEEEeccccc-cEEEEEEEEEecCC-C-CCceEEEEEEEEEecCCCCCCcHH-HHHHHHHHHHHHHHHHhcC
Confidence            99999999999998 89999999999997 4 777999999999999998777777 9999999999999999997

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=100.00  E-value=2.2e-35  Score=229.13  Aligned_cols=146  Identities=34%  Similarity=0.545  Sum_probs=132.4

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCcc-ccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIV-TSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~l-pk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      |+++.|++|+|||++||+++++|.+.+ +.|+| .|++|++++|+ |++||||.|+|. ++++.+++||||+++|+++|+
T Consensus         1 ~~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p-~v~~~~~~eG~-~~~GsvR~~~~~-~~~~~~~~kE~l~~~D~~~~~   77 (148)
T cd07816           1 GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGD-GGPGSIKLITFG-PGGKVKYVKERIDAVDEENKT   77 (148)
T ss_pred             CcEEEEEEecCCHHHHHHHHhcChhhccccccc-cccEEEEEecC-CCCceEEEEEEc-CCCcceEEEEEEEEEcccccE
Confidence            578999999999999999999997544 56667 99999999999 899999999999 777778999999999999999


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhh
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ  156 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~  156 (183)
                      ++|+++||+++.++|++|.++++|.|. + +++|+++|+++|++.+++.++|.. +++.+..+++.++.|++.
T Consensus        78 ~~y~vveg~~~~~~~~~y~~t~~v~~~-~-~~~t~v~Wt~~ye~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~  147 (148)
T cd07816          78 YKYTVIEGDVLKDGYKSYKVEIKFVPK-G-DGGCVVKWTIEYEKKGDAEPPEEE-IKAGKEKALKMFKAVEAY  147 (148)
T ss_pred             EEEEEEecccccCceEEEEEEEEEEEC-C-CCCEEEEEEEEEEECCCCCCCHHH-HHhHHHHHHHHHHHHHhc
Confidence            999999999875469999999999997 4 778999999999999988777877 899999999999999875

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.73  E-value=4e-16  Score=116.11  Aligned_cols=136  Identities=24%  Similarity=0.342  Sum_probs=110.3

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      .++.+++|++|+++||+++.|. ..+++|+| .+++++++++++ ++|+++.+.+. .+   ..+++++..+|+.+++++
T Consensus         2 ~i~~~~~i~a~~~~V~~~l~d~-~~~~~w~~-~~~~~~~~~~~~-~~g~~~~~~~~-~g---~~~~~~i~~~~~~~~~i~   74 (140)
T cd07821           2 KVTVSVTIDAPADKVWALLSDF-GGLHKWHP-AVASCELEGGGP-GVGAVRTVTLK-DG---GTVRERLLALDDAERRYS   74 (140)
T ss_pred             cEEEEEEECCCHHHHHHHHhCc-Cchhhhcc-CcceEEeecCCC-CCCeEEEEEeC-CC---CEEEEEehhcCccCCEEE
Confidence            5788999999999999999987 56799999 588999887763 78999999887 44   478999999999888999


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYI  154 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yL  154 (183)
                      |++.+|+.   ++.++..++++.|. + +|+|.++|+..|++.+. .+.+.. . ..+.....++.|.++|
T Consensus        75 ~~~~~~~~---~~~~~~~~~~~~~~-~-~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~  139 (140)
T cd07821          75 YRIVEGPL---PVKNYVATIRVTPE-G-DGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL  139 (140)
T ss_pred             EEecCCCC---CcccceEEEEEEEC-C-CCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence            99998853   67788999999997 3 55899999999999875 344443 2 4555566677777665

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.58  E-value=7e-13  Score=98.58  Aligned_cols=107  Identities=22%  Similarity=0.266  Sum_probs=88.3

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT   84 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~   84 (183)
                      .+++.++.|++||++||.++.|+ ..+++|+| .+.++++++++  ++|..+.+...  + + ..+++++..++++++.+
T Consensus         2 ~~~~~~~~v~a~~e~V~~~l~d~-~~~~~w~~-~~~~~~~~~~~--~~~~~~~~~~~--g-~-~~~~~~i~~~~~~~~~~   73 (139)
T PF10604_consen    2 FKVEVSIEVPAPPEAVWDLLSDP-ENWPRWWP-GVKSVELLSGG--GPGTERTVRVA--G-R-GTVREEITEYDPEPRRI   73 (139)
T ss_dssp             EEEEEEEEESS-HHHHHHHHTTT-TGGGGTST-TEEEEEEEEEC--STEEEEEEEEC--S-C-SEEEEEEEEEETTTTEE
T ss_pred             EEEEEEEEECCCHHHHHHHHhCh-hhhhhhhh-ceEEEEEcccc--ccceeEEEEec--c-c-cceeEEEEEecCCCcEE
Confidence            47899999999999999999987 67899999 79999988743  45666666644  4 2 48999999999889999


Q ss_pred             EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045           85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK  127 (183)
Q Consensus        85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~  127 (183)
                      .|++. ..    ++..+..++++.|.   ++||.++|+.+|+.
T Consensus        74 ~~~~~-~~----~~~~~~~~~~~~~~---~~gt~v~~~~~~~~  108 (139)
T PF10604_consen   74 TWRFV-PS----GFTNGTGRWRFEPV---GDGTRVTWTVEFEP  108 (139)
T ss_dssp             EEEEE-SS----SSCEEEEEEEEEEE---TTTEEEEEEEEEEE
T ss_pred             EEEEE-ec----ceeEEEEEEEEEEc---CCCEEEEEEEEEEE
Confidence            99996 22    56688999999997   55699999999998

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.51  E-value=1.5e-12  Score=98.41  Aligned_cols=135  Identities=16%  Similarity=0.168  Sum_probs=92.5

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC----CCcceEEEEEEeecCCce
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA----GNPQIVKELIEVVDDENY   82 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g----g~~~~~kErl~~iD~~~~   82 (183)
                      ++.++.|++||++||+++.|+ ..+|+|+| .+++++++++.+  .+........ .+    .-...+..++.+.++.++
T Consensus         1 ~~~~~~i~a~~~~Vw~~l~D~-~~~~~w~p-~v~~~~~l~~~~--~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~   75 (144)
T cd08866           1 VVARVRVPAPPETVWAVLTDY-DNLAEFIP-NLAESRLLERNG--NRVVLEQTGK-QGILFFKFEARVVLELREREEFPR   75 (144)
T ss_pred             CeEEEEECCCHHHHHHHHhCh-hhHHhhCc-CceEEEEEEcCC--CEEEEEEeee-EEEEeeeeeEEEEEEEEEecCCCc
Confidence            357899999999999999998 56799999 699999987652  2221111100 00    001245666777777788


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCC-CCeEEEEEEEEEecCCCCCCchHH--HHHHHHHHHHHHHHHH
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHE-GGSLVRFTYKYEKQNENVPDLESK--VLEMMIDIVKNIDAYI  154 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~-ggs~v~W~~~ye~~~~~~~~p~~~--~~~~~~~~~k~ie~yL  154 (183)
                      .+.|++++|+     +..|.+++++.|. + + ++|.++|.++|++... .|.+..+  ..+....+++.|.+.+
T Consensus        76 ~i~~~~~~g~-----~~~~~g~w~~~~~-~-~~~~t~v~~~~~~~~~~~-~p~~l~~~~~~~~~~~~l~~lr~~a  142 (144)
T cd08866          76 ELDFEMVEGD-----FKRFEGSWRLEPL-A-DGGGTLLTYEVEVKPDFF-APVFLVEFVLRQDLPTNLLAIRAEA  142 (144)
T ss_pred             eEEEEEcCCc-----hhceEEEEEEEEC-C-CCCeEEEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999876     4588999999997 3 4 6899999999998763 2333322  3344456666655443

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.45  E-value=8.2e-12  Score=92.56  Aligned_cols=108  Identities=17%  Similarity=0.166  Sum_probs=85.6

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIF   86 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y   86 (183)
                      ++.++.|++|+++||.++.|+ ..+|+|.| .+.+++.+.++..++|+...+... .++..-.+++++...| .++.+.|
T Consensus         1 ~~~~~~i~ap~~~Vw~~l~d~-~~~~~w~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~g~~~~~~~~v~~~~-p~~~~~~   76 (140)
T cd08865           1 VEESIVIERPVEEVFAYLADF-ENAPEWDP-GVVEVEKITDGPVGVGTRYHQVRK-FLGRRIELTYEITEYE-PGRRVVF   76 (140)
T ss_pred             CceEEEEcCCHHHHHHHHHCc-cchhhhcc-CceEEEEcCCCCCcCccEEEEEEE-ecCceEEEEEEEEEec-CCcEEEE
Confidence            367899999999999999998 57899999 578888875543578999888765 3443346789999888 4578899


Q ss_pred             EEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045           87 KLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK  127 (183)
Q Consensus        87 ~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~  127 (183)
                      ....|++      .+..++++.|.   ++||.++|+.+|+.
T Consensus        77 ~~~~~~~------~~~~~~~~~~~---~~~t~v~~~~~~~~  108 (140)
T cd08865          77 RGSSGPF------PYEDTYTFEPV---GGGTRVRYTAELEP  108 (140)
T ss_pred             EecCCCc------ceEEEEEEEEc---CCceEEEEEEEEcc
Confidence            8876543      36789999996   55799999999987

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.45  E-value=1.3e-11  Score=92.19  Aligned_cols=112  Identities=19%  Similarity=0.151  Sum_probs=81.4

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      +++.++.|++||++||+++.|+ ..+|+|+| .+.++++++++.++.+....+++. .++-.....-+++ .++ .+.++
T Consensus         3 ~v~~s~~i~ap~e~V~~~l~D~-~~~~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~i~   77 (140)
T cd07819           3 KVSREFEIEAPPAAVMDVLADV-EAYPEWSP-KVKSVEVLLRDNDGRPEMVRIGVG-AYGIKDTYALEYT-WDG-AGSVS   77 (140)
T ss_pred             eEEEEEEEeCCHHHHHHHHhCh-hhhhhhCc-ceEEEEEeccCCCCCEEEEEEEEe-eeeEEEEEEEEEE-EcC-CCcEE
Confidence            6889999999999999999998 67899999 699999876642333334444444 2221112222332 223 67899


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecC
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQN  129 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~  129 (183)
                      |+..+|.    +..++..++++.|.   ++||.|+|+.+++...
T Consensus        78 ~~~~~~~----~~~~~~~~~~~~~~---~~~t~vt~~~~~~~~~  114 (140)
T cd07819          78 WTLVEGE----GNRSQEGSYTLTPK---GDGTRVTFDLTVELTV  114 (140)
T ss_pred             EEEeccc----ceeEEEEEEEEEEC---CCCEEEEEEEEEEecC
Confidence            9999876    46688899999997   5589999999999865

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.36  E-value=4.2e-11  Score=90.29  Aligned_cols=113  Identities=18%  Similarity=0.227  Sum_probs=82.2

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIF   86 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y   86 (183)
                      ++.+++|++|+++||+++.|+ ..+|+|+|.  .+++.++++ +....++.+... .+|..... +....+|++.+++.|
T Consensus         1 ~~~s~~i~ap~~~V~~~l~D~-~~~p~~~p~--~~~~~~~~~-~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~i~~   74 (142)
T cd08861           1 VEHSVTVAAPAEDVYDLLADA-ERWPEFLPT--VHVERLELD-GGVERLRMWATA-FDGSVHTW-TSRRVLDPEGRRIVF   74 (142)
T ss_pred             CeEEEEEcCCHHHHHHHHHhH-HhhhccCCC--ceEEEEEEc-CCEEEEEEEEEc-CCCcEEEE-EEEEEEcCCCCEEEE
Confidence            468999999999999999998 568999995  666656543 222245545554 23322222 344567888889999


Q ss_pred             EEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045           87 KLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE  130 (183)
Q Consensus        87 ~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~  130 (183)
                      ..+++..   .+..+..++++.|. + +++|.|+|+.+|+..+.
T Consensus        75 ~~~~~~~---~~~~~~g~w~~~~~-~-~~~t~Vt~~~~~~~~~~  113 (142)
T cd08861          75 RQEEPPP---PVASMSGEWRFEPL-G-GGGTRVTLRHDFTLGID  113 (142)
T ss_pred             EEeeCCC---ChhhheeEEEEEEC-C-CCcEEEEEEEEEEECCC
Confidence            9998543   46688899999997 3 47899999999998754

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.29  E-value=9.1e-11  Score=88.55  Aligned_cols=131  Identities=12%  Similarity=0.120  Sum_probs=93.0

Q ss_pred             EEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEE
Q 030045            8 EAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFK   87 (183)
Q Consensus         8 ~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~   87 (183)
                      +.+++|++|++.||+++.|. ..+|+|+| .++++++++++ + .+....+.+. ..+....+..++. +++ ++++++.
T Consensus         2 ~~s~~i~ap~~~v~~~i~D~-~~~~~~~p-~~~~~~vl~~~-~-~~~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~i~~~   74 (138)
T cd07813           2 SKSRLVPYSAEQMFDLVADV-ERYPEFLP-WCTASRVLERD-E-DELEAELTVG-FGGIRESFTSRVT-LVP-PESIEAE   74 (138)
T ss_pred             eEEEEcCCCHHHHHHHHHHH-HhhhhhcC-CccccEEEEcC-C-CEEEEEEEEe-eccccEEEEEEEE-ecC-CCEEEEE
Confidence            67899999999999999998 67899999 69999999876 3 4445555555 3332234445554 565 6688999


Q ss_pred             EEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHH
Q 030045           88 LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAY  153 (183)
Q Consensus        88 viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~y  153 (183)
                      .++|+     ++.+.+++++.|. + +|+|.|+|.++|++.+.- +.+.. . ..+....+++.+.+-
T Consensus        75 ~~~g~-----~~~~~g~w~~~p~-~-~~~T~v~~~~~~~~~~~l-~~~l~~~~~~~~~~~~l~~f~~~  134 (138)
T cd07813          75 LVDGP-----FKHLEGEWRFKPL-G-ENACKVEFDLEFEFKSRL-LEALAGLVFDEVAKKMVDAFEKR  134 (138)
T ss_pred             ecCCC-----hhhceeEEEEEEC-C-CCCEEEEEEEEEEECCHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88884     4578899999997 3 678999999999997632 22221 1 334445555555443

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.23  E-value=1.4e-09  Score=81.05  Aligned_cols=106  Identities=15%  Similarity=0.068  Sum_probs=78.6

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      +++.++.|+||+++||+++.|+ ..+|+|+| .++++++..+. .++|+...++..  ++  ..+..++.++++.+ +++
T Consensus         2 ~~~~~~~i~Ap~~~Vw~~~~d~-~~~~~w~~-~~~~~~~~~~~-~~~G~~~~~~~~--~~--~~~~~~i~~~~p~~-~~~   73 (138)
T cd08862           2 KFEATIVIDAPPERVWAVLTDV-ENWPAWTP-SVETVRLEGPP-PAVGSSFKMKPP--GL--VRSTFTVTELRPGH-SFT   73 (138)
T ss_pred             EEEEEEEEcCCHHHHHHHHHhh-hhcccccC-cceEEEEecCC-CCCCcEEEEecC--CC--CceEEEEEEecCCC-EEE
Confidence            5788999999999999999997 57899999 68999987553 277876655533  22  35678888888655 577


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK  127 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~  127 (183)
                      ++... +     ...+..++++.|. + +++|.++|+.+|..
T Consensus        74 ~~~~~-~-----~~~~~~~~~~~~~-~-~~~t~l~~~~~~~~  107 (138)
T cd08862          74 WTGPA-P-----GISAVHRHEFEAK-P-DGGVRVTTSESLSG  107 (138)
T ss_pred             EEecC-C-----CEEEEEEEEEEEc-C-CCcEEEEEEEEeec
Confidence            76543 2     1244578899886 2 47899999888764

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.23  E-value=9.4e-10  Score=79.21  Aligned_cols=113  Identities=20%  Similarity=0.225  Sum_probs=87.3

Q ss_pred             EEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEE
Q 030045            8 EAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFK   87 (183)
Q Consensus         8 ~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~   87 (183)
                      +.++.|++|+++||+++.|+ ..+++|+| .+.++++.++.....|....+.+. .+ ....++.++..+++ +..++|+
T Consensus         2 ~~~~~i~a~~~~v~~~l~d~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~v~~~~~-~~~~~~~   76 (141)
T cd07812           2 EASIEIPAPPEAVWDLLSDP-ERWPEWSP-GLERVEVLGGGEGGVGARFVGGRK-GG-RRLTLTSEVTEVDP-PRPGRFR   76 (141)
T ss_pred             cEEEEeCCCHHHHHHHHhCh-hhhhhhCc-ccceEEEcCCCCccceeEEEEEec-CC-ccccceEEEEEecC-CCceEEE
Confidence            57899999999999999987 67899999 588888887653466666666553 12 22467888888877 6788999


Q ss_pred             EEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCC
Q 030045           88 LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNEN  131 (183)
Q Consensus        88 viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~  131 (183)
                      ...++..    ..+..++++.+. + +++|.++|+.++......
T Consensus        77 ~~~~~~~----~~~~~~~~~~~~-~-~~~t~v~~~~~~~~~~~~  114 (141)
T cd07812          77 VTGGGGG----VDGTGEWRLEPE-G-DGGTRVTYTVEYDPPGPL  114 (141)
T ss_pred             EecCCCC----cceeEEEEEEEC-C-CCcEEEEEEEEEecCCcc
Confidence            9887752    578889999997 2 338999999999987654

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.22  E-value=2.1e-09  Score=79.77  Aligned_cols=110  Identities=16%  Similarity=0.115  Sum_probs=82.0

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC-CCcceEEEEEEeecCCceEEE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA-GNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g-g~~~~~kErl~~iD~~~~~~~   85 (183)
                      ++.++.|++|+++||+++.|+ ..+|+|+| .+..++...   ..+|+...+.+. .+ +....+.+++.++|+. +++.
T Consensus         2 v~~~~~i~ap~~~Vw~~~~d~-~~~~~w~~-~~~~~~~~~---~~~G~~~~~~~~-~~~~~~~~~~~~v~~~~p~-~~~~   74 (141)
T cd07822           2 ISTEIEINAPPEKVWEVLTDF-PSYPEWNP-FVRSATGLS---LALGARLRFVVK-LPGGPPRSFKPRVTEVEPP-RRLA   74 (141)
T ss_pred             eEEEEEecCCHHHHHHHHhcc-ccccccCh-hheeEeccc---cCCCCEEEEEEe-CCCCCcEEEEEEEEEEcCC-CEeE
Confidence            678999999999999999997 67899999 566665431   356777777765 33 2335688889999874 5889


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEec
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQ  128 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~  128 (183)
                      |+...++.   .......++++.|. + +++|.++|+..|...
T Consensus        75 ~~~~~~~~---~~~~~~~~~~~~~~-~-~~~T~~~~~~~~~g~  112 (141)
T cd07822          75 WRGGLPFP---GLLDGEHSFELEPL-G-DGGTRFVHRETFSGL  112 (141)
T ss_pred             EEecCCCC---cEeeEEEEEEEEEc-C-CCcEEEEEeeEEEEE
Confidence            99877653   22346678899996 3 678999998877643

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.11  E-value=8e-09  Score=80.01  Aligned_cols=114  Identities=15%  Similarity=0.130  Sum_probs=82.8

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc-ceEEEEEEeecCCceE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYI   83 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~-~~~kErl~~iD~~~~~   83 (183)
                      |..+++|+|++||++||+++.|. ...|.|+| .++++++++.++.+.|+--++.+. .+|.. ++..++.  +|...++
T Consensus         1 ~~~~~si~i~a~~~~v~~lvaDv-~~~P~~~~-~~~~~~~l~~~~~~~~~r~~i~~~-~~g~~~~w~s~~~--~~~~~~~   75 (146)
T cd08860           1 GRTDNSIVIDAPLDLVWDMTNDI-ATWPDLFS-EYAEAEVLEEDGDTVRFRLTMHPD-ANGTVWSWVSERT--LDPVNRT   75 (146)
T ss_pred             CcceeEEEEcCCHHHHHHHHHhh-hhhhhhcc-ceEEEEEEEecCCeEEEEEEEEec-cCCEEEEEEEEEE--ecCCCcE
Confidence            45689999999999999999987 57899999 699999987653455533223333 23322 3334432  6888888


Q ss_pred             EEEE-EEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCC
Q 030045           84 TIFK-LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNEN  131 (183)
Q Consensus        84 ~~y~-viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~  131 (183)
                      +.+. ...|     ++.+....++++|.   ++||.|++..+|+..++.
T Consensus        76 i~~~~~~~~-----p~~~m~~~W~f~~~---~~gT~V~~~~~~~~~~~~  116 (146)
T cd08860          76 VRARRVETG-----PFAYMNIRWEYTEV---PEGTRMRWVQDFEMKPGA  116 (146)
T ss_pred             EEEEEecCC-----CcceeeeeEEEEEC---CCCEEEEEEEEEEECCCC
Confidence            8874 2222     47788899999997   456999999999987644

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=99.11  E-value=2.6e-09  Score=79.48  Aligned_cols=134  Identities=11%  Similarity=0.089  Sum_probs=87.8

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIF   86 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y   86 (183)
                      ++.+++|+||+++||+++.|+ ..+|+|+|. +..+.   +++..-|+.+.+... .++....+..++..+|+. +.+.|
T Consensus         2 i~~s~~I~a~~~~Vw~~l~d~-~~~~~w~~~-~~~~~---~~~~~Gg~~~~~~~~-~~g~~~~~~~~i~~~~~~-~~i~~   74 (139)
T cd07814           2 ITIEREFDAPPELVWRALTDP-ELLAQWFGP-TTTAE---MDLRVGGRWFFFMTG-PDGEEGWVSGEVLEVEPP-RRLVF   74 (139)
T ss_pred             eEEEEEecCCHHHHHHHcCCH-HHHHhhhCc-CCceE---EcccCCceEEEEEEC-CCCCEEeccEEEEEEcCC-CeEEE
Confidence            678999999999999999987 678999995 22222   221111666655443 333334688899999865 67999


Q ss_pred             EEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 030045           87 KLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYI  154 (183)
Q Consensus        87 ~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yL  154 (183)
                      +...++. + +.-....++++.|.   +++|.++|+.+|......  .+.. . .......++..|.+||
T Consensus        75 ~~~~~~~-~-~~~~~~~~~~~~~~---~~~T~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lk~~~  137 (139)
T cd07814          75 TWAFSDE-T-PGPETTVTVTLEET---GGGTRLTLTHSGFPEEDA--EQEAREGMEEGWTGTLDRLKALL  137 (139)
T ss_pred             EecccCC-C-CCCceEEEEEEEEC---CCCEEEEEEEEccChHhH--HHHHHhCHhhHHHHHHHHHHHHh
Confidence            9887653 1 12356788999997   567999999998875321  1111 1 3334445555555554

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.10  E-value=1.3e-08  Score=77.79  Aligned_cols=109  Identities=14%  Similarity=0.159  Sum_probs=78.9

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEc-CCCCCCccEEEEEEeecCCCc-ceEEEEEEeecCCceEE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIE-GEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYIT   84 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~e-Gd~g~~GsiR~~~~~~~gg~~-~~~kErl~~iD~~~~~~   84 (183)
                      ++.+..|++||++||+++.|. ..+|+|+| .++++++++ |++.++|+..++... ...+. ..+.-++... +..+.+
T Consensus         3 ~~~~~~i~ap~e~Vw~~~tD~-~~~~~w~~-~v~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~v~~~-~p~~~~   78 (146)
T cd07824           3 FHTVWRIPAPPEAVWDVLVDA-ESWPDWWP-GVERVVELEPGDEAGIGARRRYTWR-GLLPYRLRFELRVTRI-EPLSLL   78 (146)
T ss_pred             ceEEEEecCCHHHHHHHHhCh-hhcchhhh-ceEEEEEccCCCCCCcceEEEEEEE-ecCCcEEEEEEEEEee-cCCcEE
Confidence            567889999999999999987 67899999 699999887 333577777655543 22121 2345555554 456678


Q ss_pred             EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecC
Q 030045           85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQN  129 (183)
Q Consensus        85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~  129 (183)
                      .|.. +|++      ....++++.|.   ++||.|+++.+++..+
T Consensus        79 ~~~~-~g~~------~~~~~~~~~~~---~~gt~vt~~~~~~~~~  113 (146)
T cd07824          79 EVRA-SGDL------EGVGRWTLAPD---GSGTVVRYDWEVRTTK  113 (146)
T ss_pred             EEEE-EEee------eEEEEEEEEEc---CCCEEEEEEEEEEcCH
Confidence            8874 6663      22578899996   5689999999999755

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=99.09  E-value=6.8e-09  Score=77.67  Aligned_cols=112  Identities=11%  Similarity=0.062  Sum_probs=76.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCC--CcceEEEEEEeecCCceE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAG--NPQIVKELIEVVDDENYI   83 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg--~~~~~kErl~~iD~~~~~   83 (183)
                      +++.++.+++|+++||+++.|. ..+++|+| .++++++++++  ....  .+++. .+.  ..-..+-++..+|+. +.
T Consensus         2 ~~~~~~~i~a~~e~v~~~l~D~-~~~~~w~p-~~~~~~~~~~~--~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~-~~   73 (144)
T cd05018           2 KISGEFRIPAPPEEVWAALNDP-EVLARCIP-GCESLEKIGPN--EYEA--TVKLK-VGPVKGTFKGKVELSDLDPP-ES   73 (144)
T ss_pred             eeeeEEEecCCHHHHHHHhcCH-HHHHhhcc-chhhccccCCC--eEEE--EEEEE-EccEEEEEEEEEEEEecCCC-cE
Confidence            4678999999999999999987 67899999 58888876543  1111  12222 111  011234566655554 56


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE  130 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~  130 (183)
                      +.++....+. . ....+..++++.|.   ++||.++|+++|+..+.
T Consensus        74 ~~~~~~~~~~-~-~~~~~~~~~~l~~~---~~gT~v~~~~~~~~~g~  115 (144)
T cd05018          74 YTITGEGKGG-A-GFVKGTARVTLEPD---GGGTRLTYTADAQVGGK  115 (144)
T ss_pred             EEEEEEEcCC-C-ceEEEEEEEEEEec---CCcEEEEEEEEEEEccC
Confidence            6666553222 1 35689999999996   67899999999997653

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.09  E-value=7.3e-09  Score=78.17  Aligned_cols=138  Identities=14%  Similarity=0.116  Sum_probs=89.9

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCC-CCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGE-WGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd-~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      ++.++.|+|||++||+++.|+ ..+|+|.|.... .....++ .-.+|+...+... ..+....+..++..+++.. +++
T Consensus         2 i~~~~~i~ap~e~Vw~~l~d~-~~~~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~-~~g~~~~~~~~v~~~~p~~-~l~   77 (144)
T cd07825           2 VSVSRTVDAPAEAVFAVLADP-RRHPEIDGSGTV-REAIDGPRILAVGDVFRMAMR-LDGGPYRITNHVVAFEENR-LIA   77 (144)
T ss_pred             eEEEEEEeCCHHHHHHHHhCc-cccceeCCCCcc-ccccCCCccCCCCCEEEEEEE-cCCCceEEEEEEEEECCCC-EEE
Confidence            678999999999999999987 678999984332 2222332 1478998888766 3333345667788877755 588


Q ss_pred             EEEE-eccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 030045           86 FKLI-EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYI  154 (183)
Q Consensus        86 y~vi-EG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yL  154 (183)
                      |+.. .+..    ......++++.|. + +|+|+++++..|...+.....+.. . ........+..+++||
T Consensus        78 ~~~~~~~~~----~~~~~~~~~l~~~-~-~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~  143 (144)
T cd07825          78 WRPGPAGQE----PGGHRWRWELEPI-G-PGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA  143 (144)
T ss_pred             EEccCCCCC----CCceeEEEEEEEC-C-CCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence            8853 2222    1234557888886 2 578999999988876442111111 1 3445566777777775

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.07  E-value=5.3e-09  Score=79.17  Aligned_cols=110  Identities=17%  Similarity=0.211  Sum_probs=83.4

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCC--CCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEW--GKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT   84 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~--g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~   84 (183)
                      ++.+++|++|+++||+.+.|. ..+|+|+| .+.++++++.+.  ..+|+.-.+.+. ..+..-.++-+++.+++ ++.+
T Consensus         1 ~~~s~~I~ap~e~V~~~~~d~-~~~~~~~p-~~~~v~~~~~~~~~~~~G~~~~~~~~-~~~~~~~w~~~it~~~p-~~~f   76 (137)
T cd07820           1 LERSTVIPAPIEEVFDFHSRP-DNLERLTP-PWLEFAVLGRTPGLIYGGARVTYRLR-HFGIPQRWTTEITEVEP-PRRF   76 (137)
T ss_pred             CeEEEEcCCCHHHHHHHHcCc-chHHhcCC-CCCCeEEEecCCCcccCCcEEEEEEE-ecCCceEEEEEEEEEcC-CCeE
Confidence            468899999999999999987 67899999 588899874321  246888888876 44422355777777654 5568


Q ss_pred             EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEec
Q 030045           85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQ  128 (183)
Q Consensus        85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~  128 (183)
                      ++..+.|.     +..+..+..+.|.   ++||.++++++|+..
T Consensus        77 ~~~~~~G~-----~~~w~h~~~f~~~---~~gT~vt~~v~~~~p  112 (137)
T cd07820          77 VDEQVSGP-----FRSWRHTHRFEAI---GGGTLMTDRVEYRLP  112 (137)
T ss_pred             EEEeccCC-----chhCEEEEEEEEC---CCceEEEEEEEEeCC
Confidence            88877765     4467778888886   458999999999984

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.06  E-value=1e-08  Score=78.01  Aligned_cols=112  Identities=14%  Similarity=0.004  Sum_probs=80.4

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceee---EEEE--cCCCCCCccEEEEEEeecCCCcceEEEEEEeecCC
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQS---CELI--EGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDE   80 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s---~e~~--eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~   80 (183)
                      +++.++.|++|+++||+++.|+ ..+|+|+|. +..   ++..  +++ .++|+...++.. .+  ......++..+++ 
T Consensus         3 ~~~~s~~I~ap~e~V~~~i~D~-~~~~~W~p~-~~~~~~~~~~~~~~~-~~~G~~~~~~~~-~~--~~~~~~~v~~~~p-   75 (150)
T cd07818           3 RVERSIVINAPPEEVFPYVNDL-KNWPEWSPW-EKLDPDMKRTYSGPD-SGVGASYSWEGN-DK--VGEGEMEITESVP-   75 (150)
T ss_pred             EEEEEEEEeCCHHHHHHHHhCc-ccCcccCch-hhcCcceEEEecCCC-CCCCeEEEEecC-Cc--ccceEEEEEecCC-
Confidence            6789999999999999999987 678999993 433   2221  233 468888777654 31  1134556777764 


Q ss_pred             ceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045           81 NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE  130 (183)
Q Consensus        81 ~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~  130 (183)
                      ++++.|++..++.+  . ..+..++++.|.   ++||.++|+.+|+..+.
T Consensus        76 ~~~i~~~~~~~~~~--~-~~~~~~~~~~~~---~~gT~v~~~~~~~~~~~  119 (150)
T cd07818          76 NERIEYELRFIKPF--E-ATNDVEFTLEPV---GGGTKVTWGMSGELPFP  119 (150)
T ss_pred             CcEEEEEEEecCCc--c-ccceEEEEEEEc---CCceEEEEEEEecCCch
Confidence            56799998864432  1 367899999997   66899999999987654

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.01  E-value=2.3e-08  Score=74.50  Aligned_cols=107  Identities=17%  Similarity=0.208  Sum_probs=77.7

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIF   86 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y   86 (183)
                      ++.+++|++|+++||+++.|+ ..+|+|.| .+++++++.|.    +.  .+++....|....+..++..+++.. .+.|
T Consensus         2 v~~~i~I~ap~e~V~~~~~D~-~~~~~w~~-~~~~~~~~~~~----~~--~~~~~~~~g~~~~~~~~v~~~~~~~-~i~~   72 (139)
T cd07817           2 VEKSITVNVPVEEVYDFWRDF-ENLPRFMS-HVESVEQLDDT----RS--HWKAKGPAGLSVEWDAEITEQVPNE-RIAW   72 (139)
T ss_pred             eeEEEEeCCCHHHHHHHHhCh-hhhHHHhh-hhcEEEEcCCC----ce--EEEEecCCCCcEEEEEEEeccCCCC-EEEE
Confidence            678999999999999999987 67899999 68999987542    22  2333312244446677776655544 5899


Q ss_pred             EEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045           87 KLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE  130 (183)
Q Consensus        87 ~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~  130 (183)
                      ....|.     + .+..++++.|. + +++|.+++++.|++...
T Consensus        73 ~~~~~~-----~-~~~~~~~f~~~-~-~~~T~vt~~~~~~~~~~  108 (139)
T cd07817          73 RSVEGA-----D-PNAGSVRFRPA-P-GRGTRVTLTIEYEPPGG  108 (139)
T ss_pred             EECCCC-----C-CcceEEEEEEC-C-CCCeEEEEEEEEECCcc
Confidence            876654     2 45678889886 3 55899999999998653

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=98.99  E-value=4.8e-08  Score=72.54  Aligned_cols=108  Identities=24%  Similarity=0.376  Sum_probs=78.1

Q ss_pred             EcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEEEEecc
Q 030045           13 VKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIEGN   92 (183)
Q Consensus        13 i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~viEG~   92 (183)
                      |++||++||.++.|. ..+|+|+| .++++++++.+ +. +..-.+... .++....+..++....+..  +.+..++|+
T Consensus         1 V~ap~~~V~~~i~D~-e~~~~~~p-~~~~v~vl~~~-~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~g~   73 (130)
T PF03364_consen    1 VNAPPEEVWSVITDY-ENYPRFFP-PVKEVRVLERD-GD-GMRARWEVK-FGGIKRSWTSRVTEDPPER--IRFEQISGP   73 (130)
T ss_dssp             ESS-HHHHHHHHTTG-GGHHHHCT-TEEEEEEEEEE-CC-EEEEEEEEC-TTTTCEEEEEEEEEECTTT--EEEESSETT
T ss_pred             CCCCHHHHHHHHHHH-HHHHHhCC-CCceEEEEEeC-CC-eEEEEEEEe-cCCEEEEEEEEEEEEEeee--eeeeecCCC
Confidence            689999999999987 67899999 69999999876 33 434455555 3443345666666544444  777777765


Q ss_pred             ccccceEEEEEEEEEEeeeCCCC---CeEEEEEEEEEecCCCCCCch
Q 030045           93 VLEMLYKSFCSVAKVTQKDDHEG---GSLVRFTYKYEKQNENVPDLE  136 (183)
Q Consensus        93 ~l~~~~~sy~~t~~v~p~~~~~g---gs~v~W~~~ye~~~~~~~~p~  136 (183)
                           ++.+..++++.|.   ++   ||.++++.+|+..... +.+.
T Consensus        74 -----~~~~~g~W~~~~~---~~~~~g~~~~v~~~~~~~~~~-~~~~  111 (130)
T PF03364_consen   74 -----FKSFEGSWRFEPL---GGNEGGTRTRVTYDYEVDPPG-PLPG  111 (130)
T ss_dssp             -----EEEEEEEEEEEEE---TTECCEEEEEEEEEEEEETSS-SSHH
T ss_pred             -----chhcEEEEEEEEC---CCCcCCCEEEEEEEEEEecCc-HhHH
Confidence                 6799999999997   54   7888889998886544 4444

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>PRK10724 hypothetical protein; Provisional

Probab=98.90  E-value=5.3e-08  Score=76.62  Aligned_cols=110  Identities=15%  Similarity=0.216  Sum_probs=82.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      ++..++.+++||+++|+++.|. ...|+|+| ..+++++++-+.+  +.+..++.. -+|-......|+. +++. +++.
T Consensus        16 ~i~~~~~v~~s~~~v~~lv~Dv-e~yp~flp-~~~~s~vl~~~~~--~~~a~l~v~-~~g~~~~f~srv~-~~~~-~~I~   88 (158)
T PRK10724         16 QISRTALVPYSAEQMYQLVNDV-QSYPQFLP-GCTGSRVLESTPG--QMTAAVDVS-KAGISKTFTTRNQ-LTSN-QSIL   88 (158)
T ss_pred             eEEEEEEecCCHHHHHHHHHHH-HHHHHhCc-ccCeEEEEEecCC--EEEEEEEEe-eCCccEEEEEEEE-ecCC-CEEE
Confidence            6788999999999999999987 67899999 6888888865422  234444444 2333345555544 3443 4799


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecC
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQN  129 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~  129 (183)
                      +.+++|+     ++++.+.+++.|. + +++|.|++..+|+...
T Consensus        89 ~~~~~Gp-----F~~l~g~W~f~p~-~-~~~t~V~~~l~fef~s  125 (158)
T PRK10724         89 MQLVDGP-----FKKLIGGWKFTPL-S-QEACRIEFHLDFEFTN  125 (158)
T ss_pred             EEecCCC-----hhhccceEEEEEC-C-CCCEEEEEEEEEEEch
Confidence            9999885     5689999999997 3 5679999999999755

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.76  E-value=4.9e-07  Score=69.03  Aligned_cols=113  Identities=11%  Similarity=0.038  Sum_probs=71.9

Q ss_pred             EEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceE--EEEEEeecCCceEEE
Q 030045            8 EAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIV--KELIEVVDDENYITI   85 (183)
Q Consensus         8 ~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~--kErl~~iD~~~~~~~   85 (183)
                      +.++++++||+++|+++.|. ..++.|+| .+++++.+.++  ..  ...+++. .++-...+  +=++..+++..+++.
T Consensus         2 ~~~~~v~a~pe~vw~~l~D~-~~~~~~~p-g~~~~~~~~~~--~~--~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~   74 (146)
T cd07823           2 ENEFTVPAPPDRVWALLLDI-ERVAPCLP-GASLTEVEGDD--EY--KGTVKVK-LGPISASFKGTARLLEDDEAARRAV   74 (146)
T ss_pred             CceEEecCCHHHHHHHhcCH-HHHHhcCC-CceeccccCCC--eE--EEEEEEE-EccEEEEEEEEEEEEeccCCCcEEE
Confidence            56899999999999999986 67899999 58888865322  22  2223333 22111122  224556665677877


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE  130 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~  130 (183)
                      ++.-..+.-...--....++++.|.   ++||.++|+++++..+.
T Consensus        75 ~~~~g~~~~~~g~~~~~~~~~l~~~---~~gT~v~~~~~~~~~g~  116 (146)
T cd07823          75 LEATGKDARGQGTAEATVTLRLSPA---GGGTRVTVDTDLALTGK  116 (146)
T ss_pred             EEEEEecCCCcceEEEEEEEEEEec---CCcEEEEEEEEEEEeeE
Confidence            7644311110012256678888884   67899999999987654

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.44  E-value=8.7e-06  Score=61.07  Aligned_cols=137  Identities=15%  Similarity=0.111  Sum_probs=77.0

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      .++.+++|+||+++||+++.+. ..+++|.|...  .....|. +..|   .+.+.  +.....+.-++..+++. +.+.
T Consensus         2 ~i~~~i~i~a~~e~Vw~~~td~-~~~~~W~~~~~--~~~~~~~-~~~g---~~~~~--~~~~~~~~~~i~~~~p~-~~l~   71 (145)
T cd08898           2 RIERTILIDAPRERVWRALTDP-EHFGQWFGVKL--GPFVVGE-GATG---EITYP--GYEHGVFPVTVVEVDPP-RRFS   71 (145)
T ss_pred             eeEEEEEecCCHHHHHHHhcCh-hhhhhcccccC--CCcccCC-ccee---EEecC--CCCccceEEEEEEeCCC-cEEE
Confidence            5789999999999999999986 67899999532  1211122 1222   33333  22112455677777554 4556


Q ss_pred             EEEEecc---ccc-cceEEEEEEEEEEeeeCCCCCeEEEEEEE-EEecCCCCCCchHH-HHHHHHHHHHHHHHHHh
Q 030045           86 FKLIEGN---VLE-MLYKSFCSVAKVTQKDDHEGGSLVRFTYK-YEKQNENVPDLESK-VLEMMIDIVKNIDAYII  155 (183)
Q Consensus        86 y~viEG~---~l~-~~~~sy~~t~~v~p~~~~~ggs~v~W~~~-ye~~~~~~~~p~~~-~~~~~~~~~k~ie~yLl  155 (183)
                      |+...+.   ..+ ..-.....++++.|.   ++||.|+++.. |...++........ ..+....++..+++||-
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le  144 (145)
T cd08898          72 FRWHPPAIDPGEDYSAEPSTLVEFTLEPI---AGGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE  144 (145)
T ss_pred             EEecCCCcccccccCCCCceEEEEEEEec---CCcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence            6654322   000 011234578888896   66799998876 32221110000111 33444667777777763

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.41  E-value=4e-05  Score=58.19  Aligned_cols=138  Identities=11%  Similarity=0.025  Sum_probs=80.3

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCC-ceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQ-SVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~-~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      +..+..+++|+++||+++.+- ..+.+|+.. .--.++..+.| -.+|..-.+.+...++......=++.++|+.++ +.
T Consensus         2 ~~i~r~~~ap~e~Vw~a~tdp-~~l~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~~-l~   78 (143)
T cd08900           2 FTLERTYPAPPERVFAAWSDP-AARARWFVPSPDWTVLEDEFD-FRVGGREVSRGGPKGGPEITVEARYHDIVPDER-IV   78 (143)
T ss_pred             EEEEEEeCCCHHHHHHHhcCH-HHHHhcCCCCCCCceeeeEEe-cCCCCEEEEEEECCCCCEEeeeEEEEEecCCce-EE
Confidence            567788999999999999974 678899853 11122333334 244444444443134433345667777876544 44


Q ss_pred             EE--EEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 030045           86 FK--LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYII  155 (183)
Q Consensus        86 y~--viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl  155 (183)
                      |+  .-.++.   +......++++.|.   ++||.++.+..+-..++. ..... .......++..|++||-
T Consensus        79 ~t~~~~~~~~---~~~~s~v~~~l~~~---~~gT~l~~~~~~~~~~~~-~~~~~-~~~GW~~~l~~L~~~l~  142 (143)
T cd08900          79 YTYTMHIGGT---LLSASLATVEFAPE---GGGTRLTLTEQGAFLDGD-DDPAG-REQGTAALLDNLAAELE  142 (143)
T ss_pred             EEEeeccCCc---cccceEEEEEEEEC---CCCEEEEEEEEEeccccc-chhhh-HHHHHHHHHHHHHHHHh
Confidence            44  333332   11123478888886   678988887775322221 11112 44555778888888873

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.38  E-value=9.4e-06  Score=60.12  Aligned_cols=132  Identities=9%  Similarity=-0.043  Sum_probs=77.3

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      |++.++.|++||++||+++.|. ..+++|.+...     ..++ -.+|.--.+... .. ....+.-++.+++ .++.+.
T Consensus         1 ~~~~~~~i~ap~e~Vw~~~td~-~~~~~W~~~~~-----~~~~-~~~G~~~~~~~~-~~-~~~~~~~~v~~~~-~~~~l~   70 (136)
T cd08893           1 KFVYVTYIRATPEKVWQALTDP-EFTRQYWGGTT-----VESD-WKVGSAFEYRRG-DD-GTVDVEGEVLESD-PPRRLV   70 (136)
T ss_pred             CeEEEEEecCCHHHHHHHHcCc-hhhhheecccc-----cccC-CcCCCeEEEEeC-CC-cccccceEEEEec-CCCeEE
Confidence            5788999999999999999986 67899998522     2334 244544344333 21 1123556677776 445566


Q ss_pred             EEEEecccc-ccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH-HHHHHHHHHHHHHHHH
Q 030045           86 FKLIEGNVL-EMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK-VLEMMIDIVKNIDAYI  154 (183)
Q Consensus        86 y~viEG~~l-~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~-~~~~~~~~~k~ie~yL  154 (183)
                      |+-..+... ...-.....++.+.|.   +++|+++.+.+-...+.    ...+ .......+++.|.+||
T Consensus        71 ~~~~~~~~~~~~~~~~~~v~~~l~~~---~~~t~l~~~~~~~~~~~----~~~~~~~~gw~~~l~~Lk~~~  134 (136)
T cd08893          71 HTWRAVWDPEMAAEPPSRVTFEIEPV---GDVVKLTVTHDGFPPGS----PTLEGVSGGWPAILSSLKTLL  134 (136)
T ss_pred             EEEecCCCcccCCCCCEEEEEEEEec---CCcEEEEEEecCCCCch----hHHHhhhcCHHHHHHHHHHHh
Confidence            665432221 0012356678888886   55777666655322111    1112 4445567777777776

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.38  E-value=1.1e-05  Score=62.54  Aligned_cols=129  Identities=10%  Similarity=0.013  Sum_probs=85.1

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT   84 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~   84 (183)
                      -+++.++.|++|+++||+++.|. ..+++|.|. .      .++ -.+|....+.+. ..+ ...+..++..+|+. +++
T Consensus        11 ~~i~~~~~i~Ap~e~Vw~altdp-~~~~~W~~~-~------~~~-~~~G~~~~~~~~-~~~-~~~~~~~v~e~~p~-~~l   78 (157)
T cd08899          11 ATLRFERLLPAPIEDVWAALTDP-ERLARWFAP-G------TGD-LRVGGRVEFVMD-DEE-GPNATGTILACEPP-RLL   78 (157)
T ss_pred             eEEEEEEecCCCHHHHHHHHcCH-HHHHhhcCC-C------CCC-cccCceEEEEec-CCC-CCccceEEEEEcCC-cEE
Confidence            46889999999999999999986 678999993 2      133 355655555554 321 13567788777666 566


Q ss_pred             EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhCh
Q 030045           85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE  158 (183)
Q Consensus        85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~~~  158 (183)
                      .|+...++.      ....++++.+.   ++||.++.+.++.+..   ..... ..+....++..+.+||-..+
T Consensus        79 ~~~~~~~~~------~~~~~~~l~~~---~~gT~v~~~~~~~~~~---~~~~~-~~~GW~~~L~~Lk~~~e~~~  139 (157)
T cd08899          79 AFTWGEGGG------ESEVRFELAPE---GDGTRLTLTHRLLDER---FGAGA-VGAGWHLCLDVLEAALEGGP  139 (157)
T ss_pred             EEEecCCCC------CceEEEEEEEc---CCCEEEEEEEeccCch---hhhhh-hcccHHHHHHHHHHHHcCCC
Confidence            777654431      23557778885   5678888777764432   11111 44455777888888887665

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.25  E-value=0.00011  Score=55.97  Aligned_cols=137  Identities=11%  Similarity=0.050  Sum_probs=79.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCC-ceeeEEEEcCCCCCCccEEEEEEee-c------CCCcceEEEEEEee
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQ-SVQSCELIEGEWGKPGAVICWTFTR-Y------AGNPQIVKELIEVV   77 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~-~v~s~e~~eGd~g~~GsiR~~~~~~-~------gg~~~~~kErl~~i   77 (183)
                      +++.+..|+||+++||+++.|. ..+.+|.+. .+. +.+...+ -.+|-.-.+.+.. .      .+....++-++.++
T Consensus         1 ~~~~~r~i~ap~e~Vw~a~td~-~~~~~W~~p~~~~-~~~~~~d-~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v   77 (146)
T cd08895           1 TDRLHRVIAAPPERVYRAFLDP-DALAKWLPPDGMT-GTVHEFD-AREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLEL   77 (146)
T ss_pred             CEEEEEEECCCHHHHHHHHcCH-HHHhhcCCCCCeE-eEEEEEe-cccCCeEEEEEEcCCccccccCCcEeeeEEEEEEE
Confidence            3677889999999999999975 678898862 222 2222233 2333333333321 2      12223455678888


Q ss_pred             cCCceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 030045           78 DDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYII  155 (183)
Q Consensus        78 D~~~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl  155 (183)
                      ++.+ ++.|+..-.+... + .....++++.+.   +++|.++++...-  +.. ..... ..+....++..+++||-
T Consensus        78 ~p~~-~i~~~~~~~~~~~-~-~~~~v~~~~~~~---~~~T~lt~~~~~~--~~~-~~~~~-~~~GW~~~l~~L~~~le  145 (146)
T cd08895          78 VPNE-RIVYTDVFDDPSL-S-GEMTMTWTLSPV---SGGTDVTIVQSGI--PDG-IPPED-CELGWQESLANLAALVE  145 (146)
T ss_pred             cCCC-EEEEEEEecCCCC-C-ceEEEEEEEEec---CCCEEEEEEEeCC--Cch-hhhhH-HHHHHHHHHHHHHHHhc
Confidence            6665 4555532122110 1 234678888886   6789888887632  211 11122 55666788888888873

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.25  E-value=3.9e-05  Score=58.46  Aligned_cols=137  Identities=13%  Similarity=0.092  Sum_probs=80.4

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce-EEE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY-ITI   85 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~-~~~   85 (183)
                      ++.+..+++|+++||+++-+- ..+.+|....--.+...+.| -.+|..-.+.+...+|....+.-++.++++.++ .++
T Consensus         2 l~i~r~~~ap~e~Vw~a~Tdp-e~l~~W~~p~~~~~~~~~~d-~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~l~~t   79 (142)
T cd07826           2 IVITREFDAPRELVFRAHTDP-ELVKRWWGPRGLTMTVCECD-IRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPERIVQT   79 (142)
T ss_pred             EEEEEEECCCHHHHHHHhCCH-HHHhhccCCCCCcceEEEEe-ccCCCEEEEEEECCCCCEecceEEEEEEcCCCEEEEE
Confidence            567889999999999999974 67889986442233334445 244545455543123332345567777876543 334


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHh
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYII  155 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl  155 (183)
                      +.. ++.. +   .....++++.|.   ++||.++.+..|.....  ..... . ..+.....+..+++||.
T Consensus        80 ~~~-~~~~-~---~~s~v~~~l~~~---~~gT~l~l~~~~~~~~~--~~~~~~~~~~~Gw~~~l~~L~~~l~  141 (142)
T cd07826          80 EEF-EGLP-D---GVALETVTFTEL---GGRTRLTATSRYPSKEA--RDGVLASGMEEGMEESYDRLDELLA  141 (142)
T ss_pred             eEe-cCCC-C---CceEEEEEEEEC---CCCEEEEEEEEeCCHHH--HHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            443 3321 1   134568888886   67899888766432110  00011 1 34455778888888885

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.22  E-value=0.00014  Score=55.53  Aligned_cols=106  Identities=20%  Similarity=0.144  Sum_probs=66.1

Q ss_pred             EEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc---ceEEEEEEeecCCceEE-E
Q 030045           10 VIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP---QIVKELIEVVDDENYIT-I   85 (183)
Q Consensus        10 ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~---~~~kErl~~iD~~~~~~-~   85 (183)
                      +.+|++|++++|++|.|. ..+-+.+| -+++++.+. + .-.+.   ++.. -| +.   -..+=++..+|+.++.. .
T Consensus         2 s~~v~a~~~~vw~~l~D~-~~l~~ciP-G~~~~e~~~-~-~~~~~---~~v~-vG-~i~~~~~g~~~~~~~~~~~~~~~~   72 (140)
T PF06240_consen    2 SFEVPAPPEKVWAFLSDP-ENLARCIP-GVESIEKVG-D-EYKGK---VKVK-VG-PIKGTFDGEVRITEIDPPESYTLE   72 (140)
T ss_dssp             EEEECS-HHHHHHHHT-H-HHHHHHST-TEEEEEEEC-T-EEEEE---EEEE-SC-CCEEEEEEEEEEEEEETTTEEEEE
T ss_pred             cEEecCCHHHHHHHhcCH-HHHHhhCC-CcEEeeecC-c-EEEEE---EEEE-ec-cEEEEEEEEEEEEEcCCCcceEee
Confidence            678999999999999985 67889999 599999876 5 11111   1222 12 21   13555667777777763 3


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE  130 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~  130 (183)
                      .+.-+..    .-.+..+.+++... + +++|.+.|+++++..+-
T Consensus        73 ~~g~g~~----~~~~~~~~~~~~~~-~-~~~T~v~~~~~~~~~G~  111 (140)
T PF06240_consen   73 FEGRGRG----GGSSASANITLSLE-D-DGGTRVTWSADVEVGGP  111 (140)
T ss_dssp             EEEEECT----CCEEEEEEEEEEEC-C-CTCEEEEEEEEEEEECH
T ss_pred             eeccCCc----cceEEEEEEEEEcC-C-CCCcEEEEEEEEEEccC
Confidence            3333222    23345556666554 2 34499999999997664

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=98.19  E-value=4.3e-05  Score=59.44  Aligned_cols=135  Identities=13%  Similarity=0.070  Sum_probs=87.2

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc-c--eEEEEEEeecCCceE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-Q--IVKELIEVVDDENYI   83 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~-~--~~kErl~~iD~~~~~   83 (183)
                      ++.+..|++|+++||+++.|. ..+...+| -++|++. +|+ .   ..-.+.+. .+ +. .  .-|-++..+|+..++
T Consensus         3 ~~G~f~V~~p~e~Vw~~L~dp-e~~a~ciP-G~qs~e~-~g~-e---~~~~v~l~-ig-~l~~~~~g~~~~~~v~~~~~~   73 (146)
T COG3427           3 YEGTFRVAAPPEAVWEFLNDP-EQVAACIP-GVQSVET-NGD-E---YTAKVKLK-IG-PLKGTFSGRVRFVNVDEPPRS   73 (146)
T ss_pred             ccceEEecCCHHHHHHHhcCH-HHHHhhcC-Ccceeee-cCC-e---EEEEEEEe-ec-ceeEEEEEEEEEccccCCCcE
Confidence            566788999999999999975 67788999 5999995 566 1   12222333 22 21 2  245566667788888


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCC-CCCchH-H--HHHHHHHHHHHHHHHHh
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNEN-VPDLES-K--VLEMMIDIVKNIDAYII  155 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~-~~~p~~-~--~~~~~~~~~k~ie~yLl  155 (183)
                      ++..--.|. .. .+-..++.+++.|.   +++|++.|.+.-+-.+-. .-.+.. +  ..+.+..+++.|.++|-
T Consensus        74 ~~i~g~G~~-~~-g~~~~~~~v~l~~~---g~gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~  144 (146)
T COG3427          74 ITINGSGGG-AA-GFADGTVDVQLEPS---GEGTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELA  144 (146)
T ss_pred             EEEEeeccc-cc-ceeeeeeEEEEEEc---CCCcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            877766533 33 56688888999996   556999999986554321 011111 1  34445666666666653

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.19  E-value=4.4e-05  Score=57.76  Aligned_cols=133  Identities=11%  Similarity=0.117  Sum_probs=75.1

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccC-CceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISP-QSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P-~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      ++.+..+++|+++||+++-+- ..+.+|++ +.+.... .+.+ ..+|..-.+.+..++|..-...-++.++++.+ ++.
T Consensus         2 l~~~r~i~ap~e~Vw~a~t~p-~~l~~W~~p~~~~~~~-~~~d-~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~-~l~   77 (139)
T cd08894           2 IVTTRVIDAPRDLVFAAWTDP-EHLAQWWGPEGFTNTT-HEFD-LRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPE-RIV   77 (139)
T ss_pred             EEEEEEeCCCHHHHHHHhCCH-HHHhhccCcCCCcceE-EEEE-ecCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEE
Confidence            577889999999999999974 67888874 3332211 2233 23444434333312332222345777786554 566


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCch-HH-HHHHHHHHHHHHHHHH
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE-SK-VLEMMIDIVKNIDAYI  154 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~-~~-~~~~~~~~~k~ie~yL  154 (183)
                      |+.-.++.      ....++++.|.   ++||.++.+..|.....  .... .. ..+....++..+++||
T Consensus        78 ~t~~~~~~------~~~v~~~~~~~---~~gT~ltl~~~~~~~~~--~~~~~~~~~~~Gw~~~l~~L~~~l  137 (139)
T cd08894          78 YDHGSGPP------RFRLTVTFEEQ---GGKTRLTWRQVFPTAAE--RCEKIKFGAVEGNEQTLDRLAAYL  137 (139)
T ss_pred             EEeccCCC------cEEEEEEEEEC---CCCEEEEEEEEcCCHHH--HHHHHHhCHHHHHHHHHHHHHHHH
Confidence            66543321      24578888886   67898888765422110  0000 01 2334466777777776

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.03  E-value=0.00016  Score=55.18  Aligned_cols=139  Identities=11%  Similarity=0.019  Sum_probs=76.0

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCc-eeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce-EE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQS-VQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY-IT   84 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~-v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~-~~   84 (183)
                      +..+..++||+++||+++-+- ..+.+|++.. . .+...+.|. .+|..-.+.+...+|..-.+.-++.++|+.++ .+
T Consensus         2 l~i~r~i~a~~e~Vw~a~t~p-e~~~~W~~p~~~-~~~~~~~d~-~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~~l~~   78 (146)
T cd08896           2 LVLSRTIDAPRELVWRAWTEP-ELLKQWFCPKPW-TTEVAELDL-RPGGAFRTVMRGPDGEEFPNPGCFLEVVPGERLVF   78 (146)
T ss_pred             eEEEEEeCCCHHHHHHHcCCH-HHHhccCCCCCc-cceEEEEEe-ecCcEEEEEEECCCCCEecceEEEEEEeCCCEEEE
Confidence            567889999999999999974 6788998632 1 111122231 23333344443133432235667888876654 33


Q ss_pred             EEEEEecc-ccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH--HHHHHHHHHHHHHHHHh
Q 030045           85 IFKLIEGN-VLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK--VLEMMIDIVKNIDAYII  155 (183)
Q Consensus        85 ~y~viEG~-~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~--~~~~~~~~~k~ie~yLl  155 (183)
                      ++.+.++. .-..+  .-..++++.|.   ++||.++.+..+...  ........  ..+....++..+++||.
T Consensus        79 t~~~~~~~~~~~~~--~~~v~~~~~~~---~~gT~Ltl~~~~~~~--~~~~~~~~~~~~~GW~~~l~~L~~~l~  145 (146)
T cd08896          79 TDALTPGWRPAEKP--FMTAIITFEDE---GGGTRYTARARHWTE--ADRKQHEEMGFHDGWGTAADQLAALAE  145 (146)
T ss_pred             EEeecCCcCCCCCC--cEEEEEEEEec---CCcEEEEEEEEeCCH--HHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            43333321 11101  13567888886   678988876543211  00000010  13455778888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.03  E-value=0.00045  Score=51.78  Aligned_cols=129  Identities=18%  Similarity=0.244  Sum_probs=77.0

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceee--EEEEcCCCCCCccEEEEEEeecCCCc-ceEEEEEEeecCCce
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQS--CELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENY   82 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s--~e~~eGd~g~~GsiR~~~~~~~gg~~-~~~kErl~~iD~~~~   82 (183)
                      |++.++.++||+++||+++-|. ..+.+|++. ...  +...+.| -.+|..-.+.+...++.. ..+.-++.++++ .+
T Consensus         1 ~~~~~~~~~ap~e~Vw~a~td~-e~~~~W~~~-~~~~~~~~~~~d-~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p-~~   76 (133)
T cd08897           1 KITVETTVDAPIEKVWEAWTTP-EHITKWNFA-SDDWHCPSAEND-LRVGGKFSYRMEAKDGSMGFDFEGTYTEVEP-HK   76 (133)
T ss_pred             CEEEEEEeCCCHHHHHHHhCCH-HHHhhCCCC-CCCcccceeeec-CCcCCEEEEEEEcCCCCcccccceEEEEECC-CC
Confidence            5788999999999999999974 678999652 111  1112234 245555455443123321 234556666654 45


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYII  155 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl  155 (183)
                      ++.|+...+         ...++++.|.   ++||.++.+  +...+..  ..+. .......++..|++||-
T Consensus        77 ~l~~~~~~~---------~~v~~~l~~~---~~gT~l~l~--~~~~~~~--~~~~-~~~GW~~~l~~L~~~le  132 (133)
T cd08897          77 LIEYTMEDG---------REVEVEFTEE---GDGTKVVET--FDAENEN--PVEM-QRQGWQAILDNFKKYVE  132 (133)
T ss_pred             EEEEEcCCC---------CEEEEEEEEC---CCCEEEEEE--ECCCCCC--cHHH-HHHHHHHHHHHHHHHhh
Confidence            667775322         2468888886   677887765  3332211  1222 44555778888888873

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=98.02  E-value=0.00093  Score=53.15  Aligned_cols=142  Identities=13%  Similarity=0.118  Sum_probs=82.9

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCC---cceEEEEEEeecCCc
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGN---PQIVKELIEVVDDEN   81 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~---~~~~kErl~~iD~~~   81 (183)
                      -.+..+..+++||+++|+++.|. ...|+|.| .+.++++++-. +.--.+-.+.+. ...+   ...+-.+-...+.++
T Consensus        41 ~~~k~~~~i~~s~e~v~~vi~d~-e~~~~w~~-~~~~~~vie~~-~~~~~i~~~~~~-~p~pvs~Rdfv~~~~~~~~~~~  116 (195)
T cd08876          41 KEFKAVAEVDASIEAFLALLRDT-ESYPQWMP-NCKESRVLKRT-DDNERSVYTVID-LPWPVKDRDMVLRSTTEQDADD  116 (195)
T ss_pred             EEEEEEEEEeCCHHHHHHHHhhh-HhHHHHHh-hcceEEEeecC-CCCcEEEEEEEe-cccccCCceEEEEEEEEEcCCC
Confidence            46778889999999999999976 67899999 79999998865 221223333333 2211   112211111222223


Q ss_pred             eEEEEEEEeccc-cc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHH
Q 030045           82 YITIFKLIEGNV-LE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAY  153 (183)
Q Consensus        82 ~~~~y~viEG~~-l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~y  153 (183)
                      ..+...+..++. .+     .....+.+.+.+.|. + +++|.+++...+++.+. .|.... . .......+++++.+.
T Consensus       117 ~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~-~-~~~t~vt~~~~~dp~g~-iP~~lv~~~~~~~~~~~l~~l~~~  193 (195)
T cd08876         117 GSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPL-G-NGKTRVTYQAYADPGGS-IPGWLANAFAKDAPYNTLENLRKQ  193 (195)
T ss_pred             CEEEEEeecCCccCCCCCCeEEceeceeeEEEEEC-C-CCeEEEEEEEEeCCCCC-CCHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444443321 01     014566778889997 4 66799999999888753 233322 2 333445666666554

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=97.99  E-value=4.6e-05  Score=61.19  Aligned_cols=114  Identities=13%  Similarity=0.137  Sum_probs=82.9

Q ss_pred             CCcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCC
Q 030045            1 MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDE   80 (183)
Q Consensus         1 m~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~   80 (183)
                      |+---.++.+++|+.|+++||...+|+ ..+|.||- .+.|+++.+-.   +   -.|+...+++-.-.++-+|+ -|..
T Consensus        66 ~~~~i~v~~~V~I~kPae~vy~~W~dL-e~lP~~Mk-hl~SVkVlddk---r---SrW~~~ap~g~~v~Wea~it-~d~~  136 (217)
T COG5637          66 MAKPIEVEVQVTIDKPAEQVYAYWRDL-ENLPLWMK-HLDSVKVLDDK---R---SRWKANAPLGLEVEWEAEIT-KDIP  136 (217)
T ss_pred             ccCceEEEEEEEeCChHHHHHHHHHhh-hhhhHHHH-hhceeeccCCC---c---cceeEcCCCCceEEEeehhh-ccCC
Confidence            444567899999999999999999998 56899999 69999988554   1   35555423443335666666 4899


Q ss_pred             ceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045           81 NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE  130 (183)
Q Consensus        81 ~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~  130 (183)
                      +..|.+.-++|--++     -...++|.+. . +..|+|+.++.|-+.+.
T Consensus       137 ~e~I~W~Sl~Ga~v~-----NsG~VrF~~~-p-g~~t~V~v~lsY~~Pgg  179 (217)
T COG5637         137 GERIQWESLPGARVE-----NSGAVRFYDA-P-GDSTEVKVTLSYRPPGG  179 (217)
T ss_pred             CcEEeeecCCCCcCC-----CCccEEeeeC-C-CCceEEEEEEEecCCcc
Confidence            999999999995442     1234566665 2 45689999999987554

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=97.89  E-value=0.00011  Score=57.06  Aligned_cols=113  Identities=15%  Similarity=0.188  Sum_probs=83.5

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT   84 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~   84 (183)
                      .++++..-++-+|+++|+++.|. ...|+.+| .-.+.++.+.+  ...-+-.++.. -.+-..+..-|+. +++..+++
T Consensus         2 ~~~~~s~lv~y~a~~mF~LV~dV-~~YP~FlP-~C~~s~v~~~~--~~~l~A~l~V~-~k~i~e~F~Trv~-~~~~~~~I   75 (146)
T COG2867           2 PQIERTALVPYSASQMFDLVNDV-ESYPEFLP-WCSASRVLERN--ERELIAELDVG-FKGIRETFTTRVT-LKPTARSI   75 (146)
T ss_pred             CeeEeeeeccCCHHHHHHHHHHH-HhCchhcc-ccccceEeccC--cceeEEEEEEE-hhheeeeeeeeee-ecCchhhh
Confidence            35778888999999999999986 67999999 78888888876  33345555544 2332234555544 55666677


Q ss_pred             EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045           85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE  130 (183)
Q Consensus        85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~  130 (183)
                      .-++++|+     ++...+++++.|- + +++|.|+..++|+-.+-
T Consensus        76 ~~~l~~GP-----Fk~L~~~W~F~pl-~-~~~ckV~f~ldfeF~s~  114 (146)
T COG2867          76 DMKLIDGP-----FKYLKGGWQFTPL-S-EDACKVEFFLDFEFKSR  114 (146)
T ss_pred             hhhhhcCC-----hhhhcCceEEEEC-C-CCceEEEEEEEeeehhH
Confidence            77778776     5677889999996 3 77899999999998764

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=97.87  E-value=0.00072  Score=51.67  Aligned_cols=133  Identities=9%  Similarity=-0.012  Sum_probs=72.8

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCce-------eeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecC
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSV-------QSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDD   79 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v-------~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~   79 (183)
                      ++.++.|+||+++||+++-+   .+.+|++..-       ..|++.    -.+|....+ .. .+|. ....=++.++++
T Consensus         2 ~~~~~~i~Ap~e~Vw~a~t~---~l~~W~~p~~~~~~~~~~~~~~d----~~~GG~~~~-~~-~~g~-~~~~g~v~~v~p   71 (149)
T cd08891           2 VRKSVTVPAPPERAFEVFTE---GFGAWWPPEYHFVFSPGAEVVFE----PRAGGRWYE-IG-EDGT-ECEWGTVLAWEP   71 (149)
T ss_pred             eEEEEEecCCHHHHHHHHHh---chhhccCCCcccccCCCccEEEc----ccCCcEEEE-ec-CCCc-EeceEEEEEEcC
Confidence            67899999999999999997   3678875321       334432    122222222 12 2332 223567777876


Q ss_pred             CceEEEEEEE-ecccccc-ceEEEEEEEEEEeeeCCC-CCeEEEEEEEEEecCCC-CCCchH-H-HHHHHHHHHHHHHHH
Q 030045           80 ENYITIFKLI-EGNVLEM-LYKSFCSVAKVTQKDDHE-GGSLVRFTYKYEKQNEN-VPDLES-K-VLEMMIDIVKNIDAY  153 (183)
Q Consensus        80 ~~~~~~y~vi-EG~~l~~-~~~sy~~t~~v~p~~~~~-ggs~v~W~~~ye~~~~~-~~~p~~-~-~~~~~~~~~k~ie~y  153 (183)
                      .++ +.|+-. ..+..+. .. .-..++++.|.   + +||.++.+..+...... ...... . .......++..|++|
T Consensus        72 ~~~-l~~tw~~~~~~~~~~~~-~t~vt~~l~~~---~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~  146 (149)
T cd08891          72 PSR-LVFTWQINADWRPDPDK-ASEVEVRFEAV---GAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAA  146 (149)
T ss_pred             CCE-EEEEeccCCCcCcCCCC-ceEEEEEEEEC---CCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHH
Confidence            654 445532 1111100 11 23578888886   5 78998887776443210 001111 1 233446777888877


Q ss_pred             H
Q 030045          154 I  154 (183)
Q Consensus       154 L  154 (183)
                      |
T Consensus       147 l  147 (149)
T cd08891         147 A  147 (149)
T ss_pred             h
Confidence            6

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.64  E-value=0.00086  Score=50.57  Aligned_cols=126  Identities=17%  Similarity=0.163  Sum_probs=72.8

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIF   86 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y   86 (183)
                      ++.++.++||+++||+++-+- ..+.+|.+. -.+.++.      +|..-.+.|. ..++  .+.=++.++++ .+++.|
T Consensus         2 ~~~~~~i~ap~e~Vw~a~t~p-~~l~~W~~~-~~~~~~~------~Gg~~~~~~~-~~~~--~~~g~~~~~~p-~~~l~~   69 (136)
T cd08901           2 AKTAMLIRRPVAEVFEAFVDP-EITTKFWFT-GSSGRLE------EGKTVTWDWE-MYGA--SVPVNVLEIEP-NKRIVI   69 (136)
T ss_pred             eeEEEEecCCHHHHHHHhcCH-HHhcccccc-CCCcccc------CCCEEEEEEE-ccCC--ceEEEEEEEcC-CCEEEE
Confidence            468899999999999999974 678887553 2233433      3333345555 3332  23446677754 455667


Q ss_pred             EEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H----HHHHHHHHHHHHHHHHhh
Q 030045           87 KLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K----VLEMMIDIVKNIDAYIIQ  156 (183)
Q Consensus        87 ~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~----~~~~~~~~~k~ie~yLl~  156 (183)
                      +--.++    +.  -..++++.+. + +|||.++.+...-+.    ..++. .    .......++..+++||..
T Consensus        70 ~w~~~~----~~--s~v~~~l~~~-~-~ggT~ltl~~~~~~~----~~~~~~~~~~~~~~GW~~~L~~L~~~le~  132 (136)
T cd08901          70 EWGDPG----EP--TTVEWTFEEL-D-DGRTFVTITESGFPG----TDDEGLKQALGSTEGWTLVLAGLKAYLEH  132 (136)
T ss_pred             EecCCC----CC--EEEEEEEEEC-C-CCcEEEEEEECCCCC----CcHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            654322    22  3368888886 2 378887766543221    11111 0    123345677778887754

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=97.55  E-value=0.0039  Score=46.44  Aligned_cols=121  Identities=10%  Similarity=0.053  Sum_probs=68.8

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE-EE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI-TI   85 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~-~~   85 (183)
                      ++.+..++||+++||+++-+- ..+.+|+.. ..+.++..|     |.   +.+. .+    .+.-++.++++..+. ++
T Consensus         2 i~~~r~i~ap~e~Vw~A~T~~-e~l~~W~~~-~~~~d~~~G-----G~---~~~~-~g----~~~g~~~~i~p~~~l~~~   66 (126)
T cd08892           2 ISLTETFQVPAEELYEALTDE-ERVQAFTRS-PAKVDAKVG-----GK---FSLF-GG----NITGEFVELVPGKKIVQK   66 (126)
T ss_pred             eEEEEEECCCHHHHHHHHCCH-HHHHhhcCC-CceecCCCC-----CE---EEEe-CC----ceEEEEEEEcCCCEEEEE
Confidence            567899999999999999974 678899852 334444333     22   3334 33    244567777654332 34


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHH-HHHHHHHHHH
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMI-DIVKNIDAYI  154 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~-~~~k~ie~yL  154 (183)
                      +...+.+. .   ..-..++.+.+.   ++||.++.+....+..    ..+. ..+... .++..|.++|
T Consensus        67 w~~~~~~~-~---~~s~v~~~l~~~---~~gT~ltl~~~g~~~~----~~~~-~~~GW~~~~~~~l~~~~  124 (126)
T cd08892          67 WRFKSWPE-G---HYSTVTLTFTEK---DDETELKLTQTGVPAG----EEER-TREGWERYYFESIKQTF  124 (126)
T ss_pred             EEcCCCCC-C---CcEEEEEEEEEC---CCCEEEEEEEECCCCc----hHHH-HHhhHHHHHHHHHHHHh
Confidence            44322111 1   123578888886   6678777666533211    1111 333333 3667777765

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=97.51  E-value=0.0043  Score=45.01  Aligned_cols=120  Identities=13%  Similarity=0.161  Sum_probs=69.3

Q ss_pred             cCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEEEEeccc
Q 030045           14 KASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIEGNV   93 (183)
Q Consensus        14 ~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~viEG~~   93 (183)
                      +||+++||+++.+. ..+.+|.+......++      .+|..-.+ .. .++......-++.++++.++ +.|+.--++.
T Consensus         1 ~ap~e~Vw~a~t~~-~~~~~W~~~~~~~~~~------~~Gg~~~~-~~-~~g~~~~~~~~v~~~~p~~~-i~~~~~~~~~   70 (124)
T PF08327_consen    1 DAPPERVWEALTDP-EGLAQWFTTSEAEMDF------RPGGSFRF-MD-PDGGEFGFDGTVLEVEPPER-IVFTWRMPDD   70 (124)
T ss_dssp             SSSHHHHHHHHHSH-HHHHHHSEEEEEEEEC------STTEEEEE-EE-TTSEEEEEEEEEEEEETTTE-EEEEEEEETS
T ss_pred             CcCHHHHHHHHCCH-hHHhhccCCCcceeee------ecCCEEEE-Ee-cCCCCceeeEEEEEEeCCEE-EEEEEEccCC
Confidence            68999999999974 6788993312222222      33443333 23 34433345556888877665 6666432332


Q ss_pred             cccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH--H-HHHHHHHHHHHHHHHH
Q 030045           94 LEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES--K-VLEMMIDIVKNIDAYI  154 (183)
Q Consensus        94 l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~--~-~~~~~~~~~k~ie~yL  154 (183)
                      .  +-.....++++.+.   +++|.++.+..  ..    +....  . .......++..|.+||
T Consensus        71 ~--~~~~~~v~~~~~~~---~~~T~l~~~~~--~~----~~~~~~~~~~~~gw~~~l~~L~~~l  123 (124)
T PF08327_consen   71 P--DGPESRVTFEFEEE---GGGTRLTLTHS--GF----PDDDEEEEGMEQGWEQMLDRLKAYL  123 (124)
T ss_dssp             S--SCEEEEEEEEEEEE---TTEEEEEEEEE--EE----HSHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             C--CCCceEEEEEEEEc---CCcEEEEEEEE--cC----CccHHHHHHHHHHHHHHHHHHHHHh
Confidence            1  12355778888885   67887776662  21    11211  1 3344467777787776

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.0073  Score=46.71  Aligned_cols=138  Identities=15%  Similarity=0.098  Sum_probs=71.8

Q ss_pred             CcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCc
Q 030045            2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDEN   81 (183)
Q Consensus         2 ~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~   81 (183)
                      .....++.+..|++|+++||+++.+. .++++|+...=...++.-|.    +....+..  .+++...+.-++.++.+..
T Consensus         5 ~~~~~~~~er~i~aP~e~Vf~A~Tdp-e~l~~W~~~~~~~~d~r~gg----~~~~~~~~--~~g~~~~~~~~~~~v~p~~   77 (149)
T COG3832           5 VEDRTLEIERLIDAPPEKVFEALTDP-ELLARWFMPGGAEFDARTGG----GERVRFRG--PDGPVHSFEGEYLEVVPPE   77 (149)
T ss_pred             CCCceEEEEEeecCCHHHHHHHhcCH-HHHHhhcCCCCCccceecCC----ceEEeeec--CCCCeeecceEEEEEcCCc
Confidence            34568899999999999999999974 78999997111111111121    12222232  2343345566666675544


Q ss_pred             eEEEEEE--EeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-H--HHHHHHHHHHHHHHHh
Q 030045           82 YITIFKL--IEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-V--LEMMIDIVKNIDAYII  155 (183)
Q Consensus        82 ~~~~y~v--iEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~--~~~~~~~~k~ie~yLl  155 (183)
                       ++.|+-  -+++.   +...-..++++.|. . +|+   +++..........+.... + .  .+....++..++++|.
T Consensus        78 -rIv~tw~~~~~~~---~~~~~~v~~~l~~~-~-~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~  148 (149)
T COG3832          78 -RIVFTWDFDEDGE---PFLKSLVTITLTPE-D-DGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE  148 (149)
T ss_pred             -EEEEEeccCCCCC---cccCceEEEEEEEe-c-CCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence             444554  33332   22233456777775 1 332   222222232222222222 1 2  4445677777777663

>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=96.64  E-value=0.22  Score=38.65  Aligned_cols=111  Identities=17%  Similarity=0.287  Sum_probs=67.1

Q ss_pred             CHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEEEEe-cccc
Q 030045           16 SADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIE-GNVL   94 (183)
Q Consensus        16 pa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~viE-G~~l   94 (183)
                      ..+++|.-+......--.+.| .+.+|++++.+ + .-..|.++|. ..    .++|++..  ....++.|.+-. |+  
T Consensus        18 Tr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~-~-~~l~Rel~f~-~~----~v~e~vt~--~~~~~v~f~~~~~g~--   85 (141)
T cd08863          18 TRAQLWRGLVLRAREPQLFVP-GLDRCEVLSES-G-TVLERELTFG-PA----KIRETVTL--EPPSRVHFLQADAGG--   85 (141)
T ss_pred             CHHHHHhHHHhhhCCchhccc-ccceEEEEecC-C-CEEEEEEEEC-Cc----eEEEEEEe--cCCcEEEEEecCCCC--
Confidence            457999988854444445567 69999999776 2 2467999998 43    89999874  445567787766 43  


Q ss_pred             ccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-HHHHHHHHHHHH
Q 030045           95 EMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-KVLEMMIDIVKN  149 (183)
Q Consensus        95 ~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~~~~~~~~~~k~  149 (183)
                           +.  ++.+...   ..|. .-.++.|+..-.+..+++. ++.+....+++.
T Consensus        86 -----~l--~~~iee~---~~g~-L~lrf~ye~~~p~~~~~e~~~~~~~~~~a~~~  130 (141)
T cd08863          86 -----TL--TNTIEEP---EDGA-LYLRFVYETTLPEVAEEEAKAYQEIVKQAYKE  130 (141)
T ss_pred             -----eE--EEEeccC---CCCc-EEEEEEEEecCCCcCchHHHHHHHHHHHHHHH
Confidence                 22  2233221   3343 4567778775443333443 245554444443

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=96.48  E-value=0.046  Score=41.27  Aligned_cols=120  Identities=9%  Similarity=0.086  Sum_probs=64.2

Q ss_pred             EcCCHHHHHHHHhcCCCccccc-cCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE-EEEEEEe
Q 030045           13 VKASADKVHEVFSCRPHIVTSI-SPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI-TIFKLIE   90 (183)
Q Consensus        13 i~apa~~vw~~~~d~~~~lpk~-~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~-~~y~viE   90 (183)
                      ++||+++||+++-+- ..+.+| .+ ....+++..|      ..  +.+. .+    .+.-++.++|+.+|. ++++.-+
T Consensus         1 f~ap~e~Vw~A~Tdp-~~l~~w~~~-~~~~~d~~~G------G~--f~~~-~~----~~~G~~~ev~pp~rlv~tw~~~~   65 (132)
T PTZ00220          1 FYVPPEVLYNAFLDA-YTLTRLSLG-SPAEMDAKVG------GK--FSLF-NG----SVEGEFTELEKPKKIVQKWRFRD   65 (132)
T ss_pred             CCCCHHHHHHHHcCH-HHHHHHhcC-CCccccCCcC------CE--EEEe-cC----ceEEEEEEEcCCCEEEEEEecCC
Confidence            479999999999964 677888 43 2222333223      22  2233 22    233466667666543 3454432


Q ss_pred             ccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCC---CchHHHHHHHHH-HHHHHHHHH
Q 030045           91 GNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVP---DLESKVLEMMID-IVKNIDAYI  154 (183)
Q Consensus        91 G~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~---~p~~~~~~~~~~-~~k~ie~yL  154 (183)
                      .+. . .+  -..|+++.|. + +|+|.++.+..--+..+...   ..+. ..+.... ++..|++||
T Consensus        66 ~~~-~-~~--s~vt~~~~~~-~-~g~T~lt~~~~g~~~~~~~~~~~~~~~-~~~GW~~~~ld~L~~~l  126 (132)
T PTZ00220         66 WEE-D-VY--SKVTIEFRAV-E-EDHTELKLTQTGIPSLDKFGNGGCLER-CRNGWTQNFLDRFEKIL  126 (132)
T ss_pred             CCC-C-Cc--eEEEEEEEeC-C-CCcEEEEEEEecCccccccCCCchhhH-HHhChHHHHHHHHHHHh
Confidence            111 1 12  2478888885 2 56788887766222211100   1111 3344455 688888887

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=96.42  E-value=0.2  Score=39.13  Aligned_cols=90  Identities=17%  Similarity=0.261  Sum_probs=53.0

Q ss_pred             CHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEEEEeccccc
Q 030045           16 SADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLE   95 (183)
Q Consensus        16 pa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~viEG~~l~   95 (183)
                      +.+++|+-+......--.++| .|.+|++++-.  ...-.|.++|.  +   ..++|++...-+  .++.|....|    
T Consensus        19 Tr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~--~~~~~R~v~fg--~---~~v~E~v~~~~~--~~V~f~~~~G----   84 (149)
T PF08982_consen   19 TREQLWRGLVLKARNPQLFVP-GIDSCEVLSES--DTVLTREVTFG--G---ATVRERVTLYPP--ERVDFAQHDG----   84 (149)
T ss_dssp             -HHHHHHHHHHHHH-GGGT-T-T--EEEEEEE---SSEEEEEEEET--T---EEEEEEEEEETT--TEEEESSSBE----
T ss_pred             CHHHHHHHHHHHHhChhhCcc-ccCeEEEEecC--CCeEEEEEEEC--C---cEEEEEEEEeCC--cEEEEEcCCC----
Confidence            345899988855444456778 79999999765  55779999996  3   289999875433  3666622222    


Q ss_pred             cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEec
Q 030045           96 MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQ  128 (183)
Q Consensus        96 ~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~  128 (183)
                         ++...+|+ .|.   + | -.-.++.|+..
T Consensus        85 ---s~lt~~I~-e~~---~-g-~L~ltf~ye~~  108 (149)
T PF08982_consen   85 ---SSLTNIIS-EPE---P-G-DLFLTFTYEWR  108 (149)
T ss_dssp             ---EEEEEEEE-EEE---T-T-EEEEEEEEEEE
T ss_pred             ---CEEEEEEe-cCC---C-C-cEEEEEEEEec
Confidence               23444444 342   3 3 45566777764

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=96.37  E-value=0.3  Score=39.81  Aligned_cols=147  Identities=5%  Similarity=-0.004  Sum_probs=82.8

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCcc--EEEEEEeecCCC---cceEEEEEEeecC
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGA--VICWTFTRYAGN---PQIVKELIEVVDD   79 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs--iR~~~~~~~gg~---~~~~kErl~~iD~   79 (183)
                      .-+..+..+++|++++|+.+.+.....++|.+ .+.++++++--  ...+  ++.+....+++.   ...+-.|...-+.
T Consensus        49 k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~-~~~~~~vl~~i--d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~  125 (209)
T cd08905          49 KVFRLEVVVDQPLDNLYSELVDRMEQMGEWNP-NVKEVKILQRI--GKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRG  125 (209)
T ss_pred             cEEEEEEEecCCHHHHHHHHHhchhhhceecc-cchHHHHHhhc--CCCceEEEEEeccCCCCccCccceEEEEEEEEcC
Confidence            34678899999999999666644467899999 68888887553  1122  222111101111   1223323333334


Q ss_pred             CceEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHH
Q 030045           80 ENYITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDA  152 (183)
Q Consensus        80 ~~~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~  152 (183)
                      .+..+.....+-+.++     .....+.+-+.+.|.+++.++|.++|.+..+++|.- |.... . ..+.....++.+.+
T Consensus       126 ~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i-P~~lvN~~~~~~~~~~~~~Lr~  204 (209)
T cd08905         126 STCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL-PKSIINQVLSQTQVDFANHLRQ  204 (209)
T ss_pred             CcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC-CHHHHHHHhHHhHHHHHHHHHH
Confidence            4433222223333332     234455667888886111267999999999998863 44333 2 34555667777766


Q ss_pred             HHh
Q 030045          153 YII  155 (183)
Q Consensus       153 yLl  155 (183)
                      +|.
T Consensus       205 ~~~  207 (209)
T cd08905         205 RMA  207 (209)
T ss_pred             HHh
Confidence            664

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=96.32  E-value=0.47  Score=38.86  Aligned_cols=146  Identities=6%  Similarity=-0.032  Sum_probs=81.5

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeec--C--CCcceEEEEEEeecCCc
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY--A--GNPQIVKELIEVVDDEN   81 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~--g--g~~~~~kErl~~iD~~~   81 (183)
                      .+..+.++++|++++|+++.|. ...++|.+ .++++++++--.... .|-.+.+..+  .  .+...+-.+....+...
T Consensus        46 ~~~ge~~v~as~~~v~~ll~D~-~~r~~Wd~-~~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~  122 (205)
T cd08874          46 GFLGAGVIKAPLATVWKAVKDP-RTRFLYDT-MIKTARIHKTFTEDI-CLVYLVHETPLCLLKQPRDFCCLQVEAKEGEL  122 (205)
T ss_pred             eEEEEEEEcCCHHHHHHHHhCc-chhhhhHH-hhhheeeeeecCCCe-EEEEEEecCCCCCCCCCCeEEEEEEEEECCCc
Confidence            4556889999999999999986 56899999 899999987531222 2223222201  1  11123333322234444


Q ss_pred             eEEEEEEEeccccc------cceEEEEEEEEEEeeeC-CCCCeEEEEEEEEEecCCCCCCchH-HHHHHHHHHHHHHHHH
Q 030045           82 YITIFKLIEGNVLE------MLYKSFCSVAKVTQKDD-HEGGSLVRFTYKYEKQNENVPDLES-KVLEMMIDIVKNIDAY  153 (183)
Q Consensus        82 ~~~~y~viEG~~l~------~~~~sy~~t~~v~p~~~-~~ggs~v~W~~~ye~~~~~~~~p~~-~~~~~~~~~~k~ie~y  153 (183)
                      ..+.-+-++-+.++      .....+.+-+.+.|..+ |+|.|.++..+.-++.++..|.... .+......++..+-.|
T Consensus       123 ~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~l~N~~~~~~p~~~~~~~~~  202 (205)
T cd08874         123 SVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQLLSSLSKRQPLVIARLALF  202 (205)
T ss_pred             EEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHHHHhHHHHhccHHHHHHHHH
Confidence            44433333321221      13445677788888311 1356999999998888655554433 1333333334444444


Q ss_pred             H
Q 030045          154 I  154 (183)
Q Consensus       154 L  154 (183)
                      |
T Consensus       203 ~  203 (205)
T cd08874         203 L  203 (205)
T ss_pred             h
Confidence            3

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=96.02  E-value=0.76  Score=38.53  Aligned_cols=146  Identities=11%  Similarity=0.115  Sum_probs=84.6

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeec--CCCcceEEEEEEe--ecCC
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY--AGNPQIVKELIEV--VDDE   80 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~--gg~~~~~kErl~~--iD~~   80 (183)
                      ..+..+..+++|++++|+++.|. ...++|.+ ...++++++--....+ +-.+.+..+  -.+...+-.+-..  .+..
T Consensus        77 l~fk~e~~vd~s~~~v~dlL~D~-~~R~~WD~-~~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~  153 (235)
T cd08873          77 LSFCVELKVQTCASDAFDLLSDP-FKRPEWDP-HGRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDG  153 (235)
T ss_pred             eEEEEEEEecCCHHHHHHHHhCc-chhhhhhh-cccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCCC
Confidence            35678888999999999999986 56899999 6999999873211222 223333311  1111222222221  2232


Q ss_pred             c-eEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCC--chHH-HHHHHHHHHHHHH
Q 030045           81 N-YITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPD--LESK-VLEMMIDIVKNID  151 (183)
Q Consensus        81 ~-~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~--p~~~-~~~~~~~~~k~ie  151 (183)
                      + ..+...-+.=+.++     .....+.+-+.+.|. + +++|.|+.....+|.-  .+-  .+.. .-......|+.-+
T Consensus       154 ~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~-~-~~~t~VtY~~~~dPg~--~~~~~~~~~~~~~~~~~~~~~~~  229 (235)
T cd08873         154 DPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQD-C-GTCTEVSYYNETNPKL--LSYVTCNLAGLSALYCRTFHCCE  229 (235)
T ss_pred             CeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEEC-C-CCcEEEEEEEEcCCCc--cceeeecchhhhHHHHHHHHHHH
Confidence            2 33444434311111     245678889999997 3 6779888877766531  111  1111 3344466788888


Q ss_pred             HHHhhC
Q 030045          152 AYIIQH  157 (183)
Q Consensus       152 ~yLl~~  157 (183)
                      .||..|
T Consensus       230 ~~~~~~  235 (235)
T cd08873         230 QFLVTN  235 (235)
T ss_pred             HHhccC
Confidence            888754

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=95.75  E-value=0.83  Score=36.83  Aligned_cols=147  Identities=10%  Similarity=0.063  Sum_probs=81.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC-CC---cceEEEEEEeecCCc
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA-GN---PQIVKELIEVVDDEN   81 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g-g~---~~~~kErl~~iD~~~   81 (183)
                      -+..+..+++||++++..+.+.....++|.+ .+..+++++.-.+.. .|-...+.... .+   ...+--|--..++..
T Consensus        49 ~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~-~~~~~~~i~~~d~~~-~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~  126 (208)
T cd08868          49 VFRLTGVLDCPAEFLYNELVLNVESLPSWNP-TVLECKIIQVIDDNT-DISYQVAAEAGGGLVSPRDFVSLRHWGIRENC  126 (208)
T ss_pred             EEEEEEEEcCCHHHHHHHHHcCccccceecC-cccceEEEEEecCCc-EEEEEEecCcCCCcccccceEEEEEEEecCCe
Confidence            3677889999999999766544467899999 677777775531111 12221221011 11   112222222233433


Q ss_pred             eEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 030045           82 YITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYI  154 (183)
Q Consensus        82 ~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yL  154 (183)
                      ..+...-++=+-.+     .....+.+.+.+.|.+++.++|.++|.+..++.|.. |.--. . .......+++.+.+++
T Consensus       127 ~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~i-P~~lvN~~~~~~~~~~~~~Lr~~~  205 (208)
T cd08868         127 YLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWL-PQYLVDQALASVLLDFMKHLRKRI  205 (208)
T ss_pred             EEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCC-cceeeehhhHHHHHHHHHHHHHHH
Confidence            33333334322221     123345567788885221357999999998888643 43322 2 4555567788887776


Q ss_pred             h
Q 030045          155 I  155 (183)
Q Consensus       155 l  155 (183)
                      .
T Consensus       206 ~  206 (208)
T cd08868         206 A  206 (208)
T ss_pred             h
Confidence            4

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=95.56  E-value=0.7  Score=35.95  Aligned_cols=112  Identities=18%  Similarity=0.165  Sum_probs=63.6

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCc--cccccCC---ceeeEEEEcCCCCCCccEEEE-EEeecCCC---------cceEE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHI--VTSISPQ---SVQSCELIEGEWGKPGAVICW-TFTRYAGN---------PQIVK   71 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~--lpk~~P~---~v~s~e~~eGd~g~~GsiR~~-~~~~~gg~---------~~~~k   71 (183)
                      ++.++++++|+++||++|.|....  .-+.+..   .+.+++. .|+ |  -+|+.- .+..+.-|         --.++
T Consensus         1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~-~~~-g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~   76 (159)
T PF10698_consen    1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEV-DGD-G--VRVTVRQTVPADKLPSAARKFVGGDLRVT   76 (159)
T ss_pred             CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEE-cCC-e--EEEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence            467899999999999999964221  1222222   2444442 333 2  111111 12200111         01222


Q ss_pred             --EEEEeecCCceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecC
Q 030045           72 --ELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQN  129 (183)
Q Consensus        72 --Erl~~iD~~~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~  129 (183)
                        |+-...++..++.+|++--.+.    --+..+++.+.|.   ++||.+.+..+....-
T Consensus        77 ~~e~w~~~~~g~~~g~~~~~~~G~----P~~~~G~~~L~~~---~~gt~~~~~g~v~v~V  129 (159)
T PF10698_consen   77 RTETWTPLDDGRRTGTFTVSIPGA----PVSISGTMRLRPD---GGGTRLTVEGEVKVKV  129 (159)
T ss_pred             EEEEEecCCCCeEEEEEEEEecCc----eEEEEEEEEEecC---CCCEEEEEEEEEEEEE
Confidence              2222336778888888543221    2278899999995   7789999999988754

The function is not known.

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=95.19  E-value=1.4  Score=35.89  Aligned_cols=156  Identities=9%  Similarity=0.055  Sum_probs=89.2

Q ss_pred             EEEEEEEE-cCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC-C-CcceEEEEEEeecCCce
Q 030045            6 ELEAVIEV-KASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA-G-NPQIVKELIEVVDDENY   82 (183)
Q Consensus         6 ~~~~ei~i-~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g-g-~~~~~kErl~~iD~~~~   82 (183)
                      .+..+.++ ++|++.+++++.|. ...++|-| .+..+++++-- +.--.|..+.+..+- . +...+--|...-++...
T Consensus        48 ~~k~~~~~~~~s~e~~~~~l~D~-~~r~~Wd~-~~~e~~~ie~~-d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~  124 (222)
T cd08871          48 MIKVSAIFPDVPAETLYDVLHDP-EYRKTWDS-NMIESFDICQL-NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEY  124 (222)
T ss_pred             EEEEEEEeCCCCHHHHHHHHHCh-hhhhhhhh-hhceeEEEEEc-CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEE
Confidence            35566666 69999999999875 67899999 57676766543 111234344443111 1 11222223222233222


Q ss_pred             EEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHh
Q 030045           83 ITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYII  155 (183)
Q Consensus        83 ~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl  155 (183)
                      .+...-++-+..+     .....+.+-+.+.|. + +++|.++|.+..++.+. .|.-.. . .......+++.+...+.
T Consensus       125 vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~-~-~~~t~vt~~~~~Dp~G~-IP~~lvN~~~~~~~~~~l~~l~k~~~  201 (222)
T cd08871         125 IIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPT-G-PKGCTLTYVTQNDPKGS-LPKWVVNKATTKLAPKVMKKLHKAAL  201 (222)
T ss_pred             EEEeccccCCCCCCCCCeEEeEEEccEEEEEEC-C-CCCEEEEEEEecCCCCC-cCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            2222222222111     122345566778886 3 67899999988888774 243322 2 45556788899999988


Q ss_pred             hChhhhhccccc
Q 030045          156 QHEEARVDDTDE  167 (183)
Q Consensus       156 ~~~~~~~~~~~~  167 (183)
                      .-++.....-+|
T Consensus       202 ~y~~~~~~~~~~  213 (222)
T cd08871         202 KYPEWKAKNNPE  213 (222)
T ss_pred             HHHHHHHhcCCC
Confidence            888877555443

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=94.84  E-value=1.6  Score=35.38  Aligned_cols=145  Identities=11%  Similarity=0.060  Sum_probs=81.2

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEee--cCCCcceE-E-EEEEeecCC
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTR--YAGNPQIV-K-ELIEVVDDE   80 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~--~gg~~~~~-k-Erl~~iD~~   80 (183)
                      ..+..+..+++|++++..++.|. .+.|+|.|. ...++.++.. +.--.|-.+.+..  +-.....+ . -.++.+++.
T Consensus        46 ~~~k~e~~i~~~~~~~~~vl~d~-~~~~~W~p~-~~~~~~l~~~-~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~  122 (215)
T cd08877          46 LSLRMEGEIDGPLFNLLALLNEV-ELYKTWVPF-CIRSKKVKQL-GRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEEN  122 (215)
T ss_pred             EEEEEEEEecCChhHeEEEEehh-hhHhhhccc-ceeeEEEeec-CCceEEEEEEEeCceEecceEEEEEEEEEeeeccC
Confidence            46778889999999999999976 789999995 5555555443 1112222222210  01111111 1 222333333


Q ss_pred             ceE-EEEEEEeccc---------cc------cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHH
Q 030045           81 NYI-TIFKLIEGNV---------LE------MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEM  142 (183)
Q Consensus        81 ~~~-~~y~viEG~~---------l~------~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~  142 (183)
                      +.. +.-.-+..+.         ++      .....+.+-+.+.|. + +++|.+++.+..++.+...|.... . .+++
T Consensus       123 ~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~-~-~~~t~v~~~~~~DP~g~~IP~~liN~~~k~~  200 (215)
T cd08877         123 GQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPI-S-PTKCYLRFVANVDPKMSLVPKSLLNFVARKF  200 (215)
T ss_pred             CCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEc-C-CCCeEEEEEEEcCCCcccCCHHHHHHHHHHH
Confidence            321 1222222110         11      123567778888997 4 678999999988887763444333 2 5666


Q ss_pred             HHHHHHHHHHHH
Q 030045          143 MIDIVKNIDAYI  154 (183)
Q Consensus       143 ~~~~~k~ie~yL  154 (183)
                      +..+++.|...+
T Consensus       201 ~~~~~~~l~k~~  212 (215)
T cd08877         201 AGLLFEKIQKAA  212 (215)
T ss_pred             HHHHHHHHHHHH
Confidence            667777776654

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=94.58  E-value=2.1  Score=34.82  Aligned_cols=143  Identities=9%  Similarity=0.049  Sum_probs=77.8

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCC-ccccccCCceeeEEEEcCCCCCCccEEEEEEeec-CC---CcceEEE-EEEeecCC
Q 030045            7 LEAVIEVKASADKVHEVFSCRPH-IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY-AG---NPQIVKE-LIEVVDDE   80 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~-~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~-gg---~~~~~kE-rl~~iD~~   80 (183)
                      +..+..++++++++|+.+.|..+ .-++|-+ .+.++++++--.....-++. ..... .+   +...+-. .....++.
T Consensus        48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~-~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~  125 (208)
T cd08903          48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQ-NVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDG  125 (208)
T ss_pred             EEEEEEecCCHHHHHHHHHhccchhhhhhhh-ccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCc
Confidence            67889999999999999986533 3389999 78888888653122211222 21101 11   1112221 22223343


Q ss_pred             ceEEEEEEEeccccc--cceE-E----EEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHH
Q 030045           81 NYITIFKLIEGNVLE--MLYK-S----FCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNID  151 (183)
Q Consensus        81 ~~~~~y~viEG~~l~--~~~~-s----y~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie  151 (183)
                      ...+.+..++-+.++  -+|. -    +..-++..|. + +++|.++|.+..++++.- |.... . ..+.....++.+.
T Consensus       126 ~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~-~-~~~t~v~~~~~~DpkG~i-P~~lvn~~~~~~~~~~~~~Lr  202 (208)
T cd08903         126 TISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPG-E-PDKTQLVSFFQTDLSGYL-PQTVVDSFFPASMAEFYNNLT  202 (208)
T ss_pred             eEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCC-C-CCceEEEEEEEeccCCCc-CHHHHHHHhhHHHHHHHHHHH
Confidence            344455444443322  0111 1    2334444553 2 567999999999997653 44332 2 2344456666666


Q ss_pred             HHH
Q 030045          152 AYI  154 (183)
Q Consensus       152 ~yL  154 (183)
                      .+|
T Consensus       203 ~~~  205 (208)
T cd08903         203 KAV  205 (208)
T ss_pred             HHH
Confidence            665

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=94.53  E-value=1.6  Score=33.49  Aligned_cols=141  Identities=14%  Similarity=0.114  Sum_probs=79.0

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc---ceEEEEEEeecCCc
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP---QIVKELIEVVDDEN   81 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~---~~~kErl~~iD~~~   81 (183)
                      ..+..+.++++|++++|.++.+. ...++|-| .+.++++++-. +..-.+....+. ...+.   ..+--+-...++++
T Consensus        39 ~~~k~~~~i~~~~~~v~~~l~d~-~~~~~w~~-~~~~~~vl~~~-~~~~~i~~~~~~-~p~p~~~Rdfv~~~~~~~~~~~  114 (193)
T cd00177          39 KLLKAEGVIPASPEQVFELLMDI-DLRKKWDK-NFEEFEVIEEI-DEHTDIIYYKTK-PPWPVSPRDFVYLRRRRKLDDG  114 (193)
T ss_pred             eeEEEEEEECCCHHHHHHHHhCC-chhhchhh-cceEEEEEEEe-CCCeEEEEEEee-CCCccCCccEEEEEEEEEcCCC
Confidence            34667889999999999999974 66799999 68998988764 222344444554 22211   12211212223322


Q ss_pred             -eEEEEEEEeccccc---cce--EEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHH
Q 030045           82 -YITIFKLIEGNVLE---MLY--KSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDA  152 (183)
Q Consensus        82 -~~~~y~viEG~~l~---~~~--~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~  152 (183)
                       ..+...-++.+..+   ...  ..+.+-+.+.|. + +++|.+++....++.+.. |.... . ..+....+.|.+..
T Consensus       115 ~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~-~-~~~~~vt~~~~~D~~g~i-P~~~~~~~~~~~~~~~~~~~~~  190 (193)
T cd00177         115 TYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPL-D-PGKTKVTYVLQVDPKGSI-PKSLVNSAAKKQLASFLKDLRK  190 (193)
T ss_pred             eEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEEC-C-CCCEEEEEEEeeCCCCCc-cHHHHHhhhhhccHHHHHHHHH
Confidence             22222223332111   011  222455677886 4 778999999999888743 43332 2 33444455554443

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=94.40  E-value=2.3  Score=34.65  Aligned_cols=144  Identities=10%  Similarity=0.043  Sum_probs=77.1

Q ss_pred             eEEEEEEEEcCCHHHHHH-HHhcCCCccccccCCceeeEEEEcCCCCCCcc-E-EEEEEeecCCCc---ceEEEEEEeec
Q 030045            5 GELEAVIEVKASADKVHE-VFSCRPHIVTSISPQSVQSCELIEGEWGKPGA-V-ICWTFTRYAGNP---QIVKELIEVVD   78 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~-~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs-i-R~~~~~~~gg~~---~~~kErl~~iD   78 (183)
                      ..+..+..+++|++++|. ++.|. ...++|.+ .+.++++++-- + ..+ | +.++....+++.   ..+-.|--.-+
T Consensus        49 ~~fk~~~~v~~~~~~l~~~ll~D~-~~~~~W~~-~~~~~~vi~~~-~-~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~  124 (209)
T cd08906          49 KTFILKAFMQCPAELVYQEVILQP-EKMVLWNK-TVSACQVLQRV-D-DNTLVSYDVAAGAAGGVVSPRDFVNVRRIERR  124 (209)
T ss_pred             cEEEEEEEEcCCHHHHHHHHHhCh-hhccccCc-cchhhhheeec-c-CCcEEEEEEccccccCCCCCCceEEEEEEEec
Confidence            457889999999999984 66665 67899999 68888888653 1 111 1 122221011221   23333333334


Q ss_pred             CCceE-EEEEEEeccccc--cceE---EEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHH
Q 030045           79 DENYI-TIFKLIEGNVLE--MLYK---SFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNI  150 (183)
Q Consensus        79 ~~~~~-~~y~viEG~~l~--~~~~---sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~i  150 (183)
                      .++.. +..++ .-+.++  .+|.   +..+-+-+.|.+.+.++|.++|.+..++.|.- |..-. . ..+.....++.+
T Consensus       125 ~~~~i~~~~sv-~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~l-P~~lvN~~~~~~~~~~~~~L  202 (209)
T cd08906         125 RDRYVSAGIST-THSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRL-PRYLIHQSLAATMFEFASHL  202 (209)
T ss_pred             CCcEEEEEEEE-ecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            44432 33333 233332  1121   12222334442112568999999999998843 44332 2 444445666666


Q ss_pred             HHHH
Q 030045          151 DAYI  154 (183)
Q Consensus       151 e~yL  154 (183)
                      .++|
T Consensus       203 R~~~  206 (209)
T cd08906         203 RQRI  206 (209)
T ss_pred             HHHH
Confidence            6655

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=93.40  E-value=4.2  Score=34.15  Aligned_cols=144  Identities=13%  Similarity=0.107  Sum_probs=77.2

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC-CC--cc-eEEEEEEeecCC
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA-GN--PQ-IVKELIEVVDDE   80 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g-g~--~~-~~kErl~~iD~~   80 (183)
                      ..+..+..+++|++++++++.|. ...++|.+ .+.++++++--...- .+..++-. +- ++  .+ .+-.+-..-+.+
T Consensus        81 ~~fK~e~~vd~s~e~v~~lL~D~-~~r~~Wd~-~~~e~~vIe~id~~~-~vY~v~~~-p~~~pvs~RDfV~~~s~~~~~~  156 (240)
T cd08913          81 LSFKVEMVVHVDAAQAFLLLSDL-RRRPEWDK-HYRSCELVQQVDEDD-AIYHVTSP-SLSGHGKPQDFVILASRRKPCD  156 (240)
T ss_pred             cEEEEEEEEcCCHHHHHHHHhCh-hhhhhhHh-hccEEEEEEecCCCc-EEEEEecC-CCCCCCCCCeEEEEEEEEeccC
Confidence            35677889999999999999876 67899999 699999886531222 24444422 21 12  11 222211112222


Q ss_pred             ce---EEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH--HHHHH-HHHHHH
Q 030045           81 NY---ITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK--VLEMM-IDIVKN  149 (183)
Q Consensus        81 ~~---~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~--~~~~~-~~~~k~  149 (183)
                      +.   .+....+.=+-++     ....++.+-+.+.|. + +++|.+.+...-++  +..|.....  ..+.. ...+..
T Consensus       157 ~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~-~-~~~t~vtY~~~~dP--G~LP~~~~N~~~~~~p~~~~~~~  232 (240)
T cd08913         157 NGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEE-S-DQLTKVSYYNQATP--GVLPYISTDIAGLSSEFYSTFSA  232 (240)
T ss_pred             CCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEEC-C-CCcEEEEEEEEeCC--ccccHHHhhhhhhccchhHHHHH
Confidence            22   2333333222122     234556778888886 3 67798887665444  343433221  22222 344555


Q ss_pred             HHHHHhh
Q 030045          150 IDAYIIQ  156 (183)
Q Consensus       150 ie~yLl~  156 (183)
                      -..+|++
T Consensus       233 ~~~~~~~  239 (240)
T cd08913         233 CSQFLLD  239 (240)
T ss_pred             HHHHhhc
Confidence            5555554

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=91.97  E-value=5.6  Score=32.11  Aligned_cols=146  Identities=14%  Similarity=0.144  Sum_probs=81.6

Q ss_pred             EEEEEEEE-cCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCcc-EEEEEEeec--CCCcceEEEEEEeec-CC
Q 030045            6 ELEAVIEV-KASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGA-VICWTFTRY--AGNPQIVKELIEVVD-DE   80 (183)
Q Consensus         6 ~~~~ei~i-~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs-iR~~~~~~~--gg~~~~~kErl~~iD-~~   80 (183)
                      .+..+.++ ++|++.+++++.|. ...++|.+ .+..+++++-+ ...|+ |-.+.+..+  =.+..++-.|-.-.| +.
T Consensus        51 ~~k~~~~~~~~s~~~~~~~l~D~-~~r~~Wd~-~~~~~~~le~~-~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~  127 (209)
T cd08870          51 EYLVRGVFEDCTPELLRDFYWDD-EYRKKWDE-TVIEHETLEED-EKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDR  127 (209)
T ss_pred             EEEEEEEEcCCCHHHHHHHHcCh-hhHhhhhh-heeeEEEEEec-CCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCC
Confidence            46677778 67999999999975 57899999 57777777655 22122 222222211  111124433333334 33


Q ss_pred             ceEEEEEEEeccccc----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH--HHHHHHHHHHHHHHHH
Q 030045           81 NYITIFKLIEGNVLE----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK--VLEMMIDIVKNIDAYI  154 (183)
Q Consensus        81 ~~~~~y~viEG~~l~----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~--~~~~~~~~~k~ie~yL  154 (183)
                      ...+....+.-+..+    .....|.+.+.+.|...++++|.+.++..-++.+. .|.--..  ....+..+++.|...+
T Consensus       128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~-IP~wlvN~~~~~~~~~~l~~l~~a~  206 (209)
T cd08870         128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG-IPRELAKLAVKRGMPGFLKKLENAL  206 (209)
T ss_pred             EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC-CCHHHHHHHHHhhhHHHHHHHHHHH
Confidence            333333333321111    24778888899988521156677777766665332 3332222  4555567788887766


Q ss_pred             h
Q 030045          155 I  155 (183)
Q Consensus       155 l  155 (183)
                      .
T Consensus       207 ~  207 (209)
T cd08870         207 R  207 (209)
T ss_pred             h
Confidence            3

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=90.97  E-value=7.7  Score=32.56  Aligned_cols=117  Identities=16%  Similarity=0.132  Sum_probs=66.2

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeec--CCCcc-eEEE--EEEeecC
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY--AGNPQ-IVKE--LIEVVDD   79 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~--gg~~~-~~kE--rl~~iD~   79 (183)
                      ..+..+..+++|+++++.++.|. ...++|.+ ...++++++--...- -|..+.-. +  ..+.+ .+-.  +....++
T Consensus        78 l~fk~e~~vdvs~~~l~~LL~D~-~~r~~Wd~-~~~e~~vI~qld~~~-~vY~~~~p-Pw~Pvk~RD~V~~~s~~~~~~d  153 (236)
T cd08914          78 LSVWVEKHVKRPAHLAYRLLSDF-TKRPLWDP-HFLSCEVIDWVSEDD-QIYHITCP-IVNNDKPKDLVVLVSRRKPLKD  153 (236)
T ss_pred             EEEEEEEEEcCCHHHHHHHHhCh-hhhchhHH-hhceEEEEEEeCCCc-CEEEEecC-CCCCCCCceEEEEEEEEecCCC
Confidence            46778889999999999999987 67899999 688888876531111 26555422 2  11112 2221  1111212


Q ss_pred             Cc-eEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045           80 EN-YITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK  127 (183)
Q Consensus        80 ~~-~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~  127 (183)
                      .+ ..+.-.-+.-+.++     ....++..=+.+.|. + +++|.|+..+.-++
T Consensus       154 g~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl-~-~~~~~VtY~~~~dP  205 (236)
T cd08914         154 GNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAI-D-SNSCTVSYFNQISA  205 (236)
T ss_pred             CCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEc-C-CCcEEEEEEEEcCC
Confidence            22 33333323221222     123342223377786 3 67899888888766

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=90.70  E-value=7  Score=30.84  Aligned_cols=146  Identities=13%  Similarity=0.039  Sum_probs=82.6

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc---ce--EEEEEEeecC
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP---QI--VKELIEVVDD   79 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~---~~--~kErl~~iD~   79 (183)
                      ..+..+..+.+++++++..+-.+....++|.| .+..+++++--... ..|..+.+..+-++.   ..  .+.. ....+
T Consensus        45 ~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~-~~~~~~~ie~~~~~-~~i~~~~~~~~~~p~~~RDfv~~r~~-~~~~~  121 (206)
T smart00234       45 EASRAVGVVPMVCADLVEELMDDLRYRPEWDK-NVAKAETLEVIDNG-TVIYHYVSKFVAGPVSPRDFVFVRYW-RELVD  121 (206)
T ss_pred             EEEEEEEEEecChHHHHHHHHhcccchhhCch-hcccEEEEEEECCC-CeEEEEEEecccCcCCCCeEEEEEEE-EEcCC
Confidence            35677888999999866544433467899999 68888877643111 245554433111121   12  2222 22234


Q ss_pred             CceEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHH
Q 030045           80 ENYITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDA  152 (183)
Q Consensus        80 ~~~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~  152 (183)
                      ....+...-++.+-.+     .....+.+-+.+.|. + ++.|.++|....++.+. .|..-. . .......+++.+-+
T Consensus       122 ~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~-~-~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~~  198 (206)
T smart00234      122 GSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPL-G-NGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWVA  198 (206)
T ss_pred             CcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEEC-C-CCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHHH
Confidence            4444544444333221     123456778888896 3 56699999999888875 343332 2 44555666676666


Q ss_pred             HHhh
Q 030045          153 YIIQ  156 (183)
Q Consensus       153 yLl~  156 (183)
                      +|..
T Consensus       199 ~~~~  202 (206)
T smart00234      199 TLQK  202 (206)
T ss_pred             HHHH
Confidence            6643

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=90.48  E-value=8.2  Score=31.23  Aligned_cols=146  Identities=15%  Similarity=0.195  Sum_probs=80.1

Q ss_pred             EEEEEEEE-cCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCcc-EEEEEEeecC--CCcceEEEEEEeecCCc
Q 030045            6 ELEAVIEV-KASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGA-VICWTFTRYA--GNPQIVKELIEVVDDEN   81 (183)
Q Consensus         6 ~~~~ei~i-~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs-iR~~~~~~~g--g~~~~~kErl~~iD~~~   81 (183)
                      .+..+.++ ++|++.+++++.|. ...++|.+ .+.++++++-+ ...++ |-.+.+..+=  .+..++-.|-...|+++
T Consensus        46 ~~k~~~~~~d~s~~~~~~~~~D~-~~r~~Wd~-~~~~~~~le~~-~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~  122 (207)
T cd08911          46 EYKVYGSFDDVTARDFLNVQLDL-EYRKKWDA-TAVELEVVDED-PETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEEN  122 (207)
T ss_pred             EEEEEEEEcCCCHHHHHHHHhCH-HHHHHHHh-hheeEEEEEcc-CCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCC
Confidence            45666666 99999999999976 67899999 67788888764 22232 2333322110  11134544544566555


Q ss_pred             eE--EEEEEEeccccc-----cceEEEEEEEEEEeeeC-CCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHH
Q 030045           82 YI--TIFKLIEGNVLE-----MLYKSFCSVAKVTQKDD-HEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNID  151 (183)
Q Consensus        82 ~~--~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~-~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie  151 (183)
                      ..  +...-++-+..+     ....+|.+.+.+.|... +++||.+.++..-++.+ ..|.--. . +......+++.+.
T Consensus       123 ~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG-~IP~~lvN~~~~~~~~~~l~~l~  201 (207)
T cd08911         123 KLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGV-NIPSYITSWVAMSGMPDFLERLR  201 (207)
T ss_pred             CEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCC-ccCHHHHHHHHHhhccHHHHHHH
Confidence            43  222223211111     25678888999988520 14577776544433322 2232222 2 4445567777776


Q ss_pred             HHHh
Q 030045          152 AYII  155 (183)
Q Consensus       152 ~yLl  155 (183)
                      ..++
T Consensus       202 ~a~~  205 (207)
T cd08911         202 NAAL  205 (207)
T ss_pred             HHHh
Confidence            6654

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>COG4276 Uncharacterized conserved protein [Function unknown]

Probab=88.88  E-value=9.4  Score=29.64  Aligned_cols=141  Identities=12%  Similarity=0.090  Sum_probs=84.5

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc-ceEEEEEEe--ecCC
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEV--VDDE   80 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~-~~~kErl~~--iD~~   80 (183)
                      .|++.....|++|.+-||+....- ..+..+-|..+  +-+-+|+.-+.|+-....+..-+.+. -.++-|+++  .|+-
T Consensus         1 m~tF~~~~~i~aP~E~VWafhsrp-d~lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~   77 (153)
T COG4276           1 MGTFVYRTTITAPHEMVWAFHSRP-DALQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG   77 (153)
T ss_pred             CcceEEeeEecCCHHHHhhhhcCc-cHHHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence            367888999999999999998854 45666667433  33334542344443333322012222 467888777  4433


Q ss_pred             ceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 030045           81 NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYI  154 (183)
Q Consensus        81 ~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yL  154 (183)
                       .+++=..|.|++   +.-+..-+-++.+.   +|+++..=.+.|+...+....-.. . ..-....||+.-+.-|
T Consensus        78 -~~FtDv~i~gPf---p~~~WrHtH~F~~e---gg~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~Rhs~l  146 (153)
T COG4276          78 -SRFTDVCITGPF---PALNWRHTHNFVDE---GGGTVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRSRHSTL  146 (153)
T ss_pred             -ceeeeeeecCCc---cceeeEEEeeeecC---CCcEEEEeeEEeeccCcceechhhhhhHHHHHHHHHHHHHHHH
Confidence             344555676775   33367788999995   778999999999986553222112 1 2333356666544433

>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins

Probab=88.87  E-value=11  Score=30.27  Aligned_cols=146  Identities=12%  Similarity=0.003  Sum_probs=76.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcC-CCccccccCCceeeEEEEcCCCCCCccEEEEEEeec-CC--Ccc-eE-EEEEEeecC
Q 030045            6 ELEAVIEVKASADKVHEVFSCR-PHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY-AG--NPQ-IV-KELIEVVDD   79 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~-~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~-gg--~~~-~~-kErl~~iD~   79 (183)
                      -+..+..++++++++++.+.+. ....++|-+ .+..+++++.- +..=.|....+... .+  ..+ .+ ......+++
T Consensus        47 ~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~-~~~~~~~le~i-d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~  124 (206)
T cd08867          47 LYRAEGIVDALPEKVIDVIIPPCGGLRLKWDK-SLKHYEVLEKI-SEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYED  124 (206)
T ss_pred             EEEEEEEEcCCHHHHHHHHHhcCccccccccc-cccceEEEEEe-CCCeEEEEEEccccccCccCCcceEEEEEEEEeCC
Confidence            3778899999999999999872 345789998 68888888764 21111222222100 11  111 11 111122333


Q ss_pred             CceEEEEEEEeccccc--cc---eEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHH
Q 030045           80 ENYITIFKLIEGNVLE--ML---YKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDA  152 (183)
Q Consensus        80 ~~~~~~y~viEG~~l~--~~---~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~  152 (183)
                      ....+...-++=+..+  .+   -..+.+-+-+.|.+++.++|.++|.+..++.|.. |.--. . ..+....+++.+..
T Consensus       125 ~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i-P~~lvn~~~~~~~~~~~~~lr~  203 (206)
T cd08867         125 NQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI-PQSLVESAMPSNLVNFYTDLVK  203 (206)
T ss_pred             CeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC-cHHHHHhhhhhhHHHHHHHHHH
Confidence            3333333334322221  01   1223334445553121457999999999998753 43222 1 33444566666665


Q ss_pred             HH
Q 030045          153 YI  154 (183)
Q Consensus       153 yL  154 (183)
                      +|
T Consensus       204 ~~  205 (206)
T cd08867         204 GV  205 (206)
T ss_pred             hc
Confidence            54

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=88.81  E-value=11  Score=30.26  Aligned_cols=119  Identities=12%  Similarity=0.032  Sum_probs=69.2

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeec-CCC-cceEEEEEEeecCCc--
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY-AGN-PQIVKELIEVVDDEN--   81 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~-gg~-~~~~kErl~~iD~~~--   81 (183)
                      -+..+.++++++++++..+.+.   -++|.+ .+.++++++-- +.-=.|-...+..+ ..+ ...+-.|.-..+.++  
T Consensus        45 ~~K~~~~v~a~~~~v~~~l~d~---r~~Wd~-~~~~~~vie~i-d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~  119 (197)
T cd08869          45 LWRASTEVEAPPEEVLQRILRE---RHLWDD-DLLQWKVVETL-DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGA  119 (197)
T ss_pred             EEEEEEEeCCCHHHHHHHHHHH---Hhccch-hhheEEEEEEe-cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCc
Confidence            3578999999999999988764   389999 67777777543 11111222222211 111 123333333333333  


Q ss_pred             eEEEEEEEec-ccc--c-cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCC
Q 030045           82 YITIFKLIEG-NVL--E-MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNEN  131 (183)
Q Consensus        82 ~~~~y~viEG-~~l--~-~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~  131 (183)
                      ..+.+.-++- +..  + .....+.+-+.++|. + +++|.+++.+..++.|..
T Consensus       120 ~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~-~-~~~t~vty~~~~Dp~G~i  171 (197)
T cd08869         120 CVLVETSVEHTEPVPLGGVRAVVLASRYLIEPC-G-SGKSRVTHICRVDLRGRS  171 (197)
T ss_pred             EEEEEECCcCCCCCCCCCEEEEEEeeeEEEEEC-C-CCCeEEEEEEEECCCCCC
Confidence            3333333321 111  1 123456678888996 3 678999999999998753

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains

Probab=86.04  E-value=19  Score=29.99  Aligned_cols=143  Identities=11%  Similarity=0.094  Sum_probs=79.2

Q ss_pred             EEEEEEEEc-CCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCcc-EEEEEEeec--CCCcce-EEEEEEeecCC
Q 030045            6 ELEAVIEVK-ASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGA-VICWTFTRY--AGNPQI-VKELIEVVDDE   80 (183)
Q Consensus         6 ~~~~ei~i~-apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs-iR~~~~~~~--gg~~~~-~kErl~~iD~~   80 (183)
                      .+..+.+++ +++..+.+.+.|- ...++|.. .+.+.++++-.  ..++ |-...+..+  -.+... +.-++...++.
T Consensus        53 ~~Ka~~~v~~vt~~~~~~~l~D~-~~r~~Wd~-~~~~~~vie~l--~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~  128 (235)
T cd08872          53 PLKATHAVKGVTGHEVCHYFFDP-DVRMDWET-TLENFHVVETL--SQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPAL  128 (235)
T ss_pred             eEEEEEEECCCCHHHHHHHHhCh-hhHHHHHh-hhheeEEEEec--CCCCEEEEEEccCCCCCCCcEEEEEEEEEecCcc
Confidence            467778888 9999999999875 67899999 68888877553  1122 222222200  001112 12222223332


Q ss_pred             c--------eEEEEEEEeccccc--cceEEEE-------EE--------EEEEeeeCCCCCeEEEEEEEEEecCCCCCCc
Q 030045           81 N--------YITIFKLIEGNVLE--MLYKSFC-------SV--------AKVTQKDDHEGGSLVRFTYKYEKQNENVPDL  135 (183)
Q Consensus        81 ~--------~~~~y~viEG~~l~--~~~~sy~-------~t--------~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p  135 (183)
                      .        -.+..++. -+..+  .+|-.-.       .+        +.++|.   +++|.+++.+.-++.|.. |..
T Consensus       129 ~~~~~~~~~vii~~Sv~-h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~---~~~~~ity~~~~dPgG~i-P~w  203 (235)
T cd08872         129 EEPNAHDTWIVCNFSVD-HDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRD---NILCKITYVANVNPGGWA-PAS  203 (235)
T ss_pred             ccccCCCeEEEEEeccc-CccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCC---CCeEEEEEEEEeCCCCCc-cHH
Confidence            1        22333332 22222  0111111       11        223342   567999888887777653 444


Q ss_pred             hH-H-HHHHHHHHHHHHHHHHhhC
Q 030045          136 ES-K-VLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus       136 ~~-~-~~~~~~~~~k~ie~yLl~~  157 (183)
                      -. . ++..+..++|++.+|++.+
T Consensus       204 vvn~~~k~~~P~~l~~~~~~~~~~  227 (235)
T cd08872         204 VLRAVYKREYPKFLKRFTSYVQEK  227 (235)
T ss_pred             HHHHHHHhhchHHHHHHHHHHHHh
Confidence            33 3 6777799999999999864

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg

>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation

Probab=85.93  E-value=0.31  Score=32.11  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=25.5

Q ss_pred             HHHHHHHHhhChhhh-hccccceeeeeccccccc
Q 030045          147 VKNIDAYIIQHEEAR-VDDTDEVLLVNVNSQEIE  179 (183)
Q Consensus       147 ~k~ie~yLl~~~~~~-~~~~~~~~~~~~~~~~~~  179 (183)
                      .+.|=.||+.||++- .=-.-+|-|++|+.+|..
T Consensus         2 ~Q~iV~YLv~nPevl~kl~~g~asLIGv~~~e~~   35 (57)
T PF05952_consen    2 KQEIVNYLVQNPEVLEKLKEGEASLIGVDKDEQK   35 (57)
T ss_pred             hHHHHHHHHHChHHHHHHHcCCeeEecCCHHHHH
Confidence            467889999999984 223348999999988754

It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
2i9y_A	166	Solution Structure Of Arabidopsis Thaliana Protein		2e-25
1e09_A	159	Solution Structure Of The Major Cherry Allergen Pru		1e-06
4a84_A	159	Crystal Structure Of Major Birch Pollen Allergen Be		4e-06
4a80_A	159	Crystal Structure Of Major Birch Pollen Allergen Be		1e-05
1fsk_A	159	Complex Formation Between A Fab Fragment Of A Monoc		1e-05
1h2o_A	159	Solution Structure Of The Major Cherry Allergen Pru		2e-05
1fm4_A	159	Crystal Structure Of The Birch Pollen Allergen Bet		2e-05
1b6f_A	159	Birch Pollen Allergen Bet V 1 Length = 159		3e-05
1llt_A	159	Birch Pollen Allergen Bet V 1 Mutant E45s Length =		5e-05
1qmr_A	159	Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E4		5e-05
4a8u_A	159	Crystal Structure Of Native Birch Pollen Allergen B		6e-05
2lpx_A	170	Solution Structure Of Strawberry Allergen Fra A 1e		1e-04

>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein At1g70830, A Member Of The Major Latex Protein Family Length = 166

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 2   SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
           SL G+LE  +E+KASADK H +F+ +PH V+  SP ++Q C+L EG+WG  G+++ W + 
Sbjct: 14  SLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV 73
Query: 62  RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
            + G  ++ KE IE V+ +  +  F++IEG++++  YKSF    +VT K     GS+V +
Sbjct: 74  -HDGEAKVAKERIEAVEPDKNLITFRVIEGDLMKE-YKSFLLTIQVTPKPGGP-GSIVHW 130
Query: 122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE 158
             +YEK +E V   E+ +L+  +++ K ID +++  E
Sbjct: 131 HLEYEKISEEVAHPET-LLQFCVEVSKEIDEHLLAEE 166

>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1 Length = 159

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 30  IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLI 89
           +V  I+PQ+++  E++EG+ G PG +   TF         VK  I+ +D ENY   + LI
Sbjct: 29  LVPKIAPQAIKHSEILEGDGG-PGTIKKITFGE-GSQYGYVKHKIDSIDKENYSYSYTLI 86
Query: 90  EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKV---LEMMIDI 146
           EG+ L    +      K+       GGS+++ T  Y  +  NV   E  V    E   ++
Sbjct: 87  EGDALGDTLEKISYETKLVASPS--GGSIIKSTSHYHTKG-NVEIKEEHVKAGKEKASNL 143
Query: 147 VKNIDAYIIQHEEA 160
            K I+ Y+  H +A
Sbjct: 144 FKLIETYLKGHPDA 157

>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A F30v Mutant In Complex With Deoxycholate Length = 159

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 29  HIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFK 87
           ++V  ++PQ++ S E IEG  G PG +   +F    G P + VK+ ++ VD  N+   + 
Sbjct: 28  NLVPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GFPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88  LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE--SKVLEMMID 145
           +IEG  +    +   +  K+    D  GGS+++ + KY  + ++    E      EM   
Sbjct: 85  VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGET 142
Query: 146 IVKNIDAYIIQHEEA 160
           +++ +++Y++ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157

>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans) Length = 159

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 29  HIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFK 87
           ++   ++PQ++ S E IEG  G PG +   +F    G P + VK+ ++ VD  N+   + 
Sbjct: 28  NLFPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GFPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88  LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE--SKVLEMMID 145
           +IEG  +    +   +  K+    D  GGS+++ + KY  + ++    E      EM   
Sbjct: 85  VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGET 142
Query: 146 IVKNIDAYIIQHEEA 160
           +++ +++Y++ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157

>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal Igg Antibody And The Major Allergen From Birch Pollen Bet V 1 Length = 159

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 29  HIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFK 87
           ++   ++PQ++ S E IEG  G PG +   +F    G P + VK+ ++ VD  N+   + 
Sbjct: 28  NLFPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GLPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88  LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE--SKVLEMMID 145
           +IEG  +    +   +  K+    D  GGS+++ + KY  + ++    E      EM   
Sbjct: 85  VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGET 142
Query: 146 IVKNIDAYIIQHEEA 160
           +++ +++Y++ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157

>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1 Mutant E45w Length = 159

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 30  IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLI 89
           +V  I+PQ+++  E++ G+ G PG +   TF         VK  I+ +D ENY   + LI
Sbjct: 29  LVPKIAPQAIKHSEILWGDGG-PGTIKKITFGE-GSQYGYVKHKIDSIDKENYSYSYTLI 86
Query: 90  EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKV---LEMMIDI 146
           EG+ L    +      K+       GGS+++ T  Y  +  NV   E  V    E   ++
Sbjct: 87  EGDALGDTLEKISYETKLVASPS--GGSIIKSTSHYHTKG-NVEIKEEHVKAGKEKASNL 143
Query: 147 VKNIDAYIIQHEEA 160
            K I+ Y+  H +A
Sbjct: 144 FKLIETYLKGHPDA 157

>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l Length = 159

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 30  IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFKL 88
           +V  ++PQ++ S E IEG  G PG +    F    G P + VK+ ++ VD  N+   + +
Sbjct: 29  LVPKVAPQAISSVENIEGNGG-PGTIKKINFPE--GFPFKYVKDRVDEVDHTNFKYNYSV 85
Query: 89  IEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYE-KQNENVPDLESKV-LEMMIDI 146
           IEG  +    +   +  K+    D  GG +++ + KY  K N  V   + K   EM   +
Sbjct: 86  IEGGPVGDTLEKISNEIKIVATPD--GGCVLKISNKYHTKGNHEVKAEQVKASKEMGETL 143
Query: 147 VKNIDAYIIQHEEA 160
           ++ +++Y++ H +A
Sbjct: 144 LRAVESYLLAHSDA 157

>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1 Length = 159

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 29  HIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFK 87
           ++   ++PQ++ S E IEG  G PG +   +F    G P + VK+ ++ VD  N+   + 
Sbjct: 28  NLFPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GFPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88  LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE--SKVLEMMID 145
           +IEG  +    +   +  K+    D  GGS+++ + KY  + ++    E      E+   
Sbjct: 85  VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKELGET 142
Query: 146 IVKNIDAYIIQHEEA 160
           +++ +++Y++ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157

>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s Length = 159

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 29  HIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFK 87
           ++   ++PQ++ S E I G  G PG +   +F    G P + VK+ ++ VD  N+   + 
Sbjct: 28  NLFPKVAPQAISSVENISGNGG-PGTIKKISFPE--GLPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88  LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE--SKVLEMMID 145
           +IEG  +    +   +  K+    D  GGS+++ + KY  + ++    E      EM   
Sbjct: 85  VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGET 142
Query: 146 IVKNIDAYIIQHEEA 160
           +++ +++Y++ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157

>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s, P108g Length = 159

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 34  ISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFKLIEGN 92
           ++PQ++ S E I G  G PG +   +F    G P + VK+ ++ VD  N+   + +IEG 
Sbjct: 33  VAPQAISSVENISGNGG-PGTIKKISFPE--GLPFKYVKDRVDEVDHTNFKYNYSVIEGG 89
Query: 93  VLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE--SKVLEMMIDIVKNI 150
            +    +   +  K+    D  GGS+++ + KY  + ++    E      EM   +++ +
Sbjct: 90  PIGDTLEKISNEIKIVATGD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGETLLRAV 147
Query: 151 DAYIIQHEEA 160
           ++Y++ H +A
Sbjct: 148 ESYLLAHSDA 157

>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1 Isoform J Length = 159

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 29  HIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFK 87
           ++   ++PQ++ S E IEG  G PG +   +F    G P + VK+ ++ VD  N+   + 
Sbjct: 28  NLFPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GFPFKYVKDRVDEVDHTNFKYSYS 84
Query: 88  LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE--SKVLEMMID 145
           +IEG  +    +   +  K+    +  GGS+++   KY  + ++    E      EM   
Sbjct: 85  VIEGGPVGDTLEKISNEIKIVATPN--GGSILKINNKYHTKGDHEVKAEQIKASKEMGET 142
Query: 146 IVKNIDAYIIQHEEA 160
           +++ +++Y++ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157

>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e Length = 170

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 30  IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLI 89
           ++  I+PQ+V+  E++EG+ G PG +   TF     +   VK  I  +D  N+   + LI
Sbjct: 30  LIPKIAPQAVKCAEILEGDGG-PGTIKKITFGE-GSHYGYVKHKIHSIDKVNHTYSYSLI 87
Query: 90  EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE 130
           EG+ L    +      K+       GG++++ T KY  + +
Sbjct: 88  EGDALSENIEKIDYETKLVSAP--HGGTIIKTTSKYHTKGD 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	2e-40
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	2e-30
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	6e-30
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	9e-26
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	3e-25
1vjh_A	122	BET V I allergen family; structural genomics, cent	7e-24
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	9e-24
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	5e-23
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	2e-22
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	2e-22
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	7e-22
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	2e-20
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	8e-11
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	6e-09
2le1_A	151	Uncharacterized protein; structural genomics, nort	7e-09
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	2e-06
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	8e-06
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	2e-05
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	1e-04

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score =  133 bits (337), Expect = 2e-40
 Identities = 58/157 (36%), Positives = 98/157 (62%), Gaps = 4/157 (2%)

Query: 2   SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
           SL G+LE  +E+KASADK H +F+ +PH V+  SP ++Q C+L EG+WG  G+++ W + 
Sbjct: 14  SLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV 73

Query: 62  RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
            + G  ++ KE IE V+ +  +  F++IEG++++  YKSF    +VT K     GS+V +
Sbjct: 74  -HDGEAKVAKERIEAVEPDKNLITFRVIEGDLMKE-YKSFLLTIQVTPKPGG-PGSIVHW 130

Query: 122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE 158
             +YEK +E V      +L+  +++ K ID +++  E
Sbjct: 131 HLEYEKISEEVAH-PETLLQFCVEVSKEIDEHLLAEE 166

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score =  108 bits (270), Expect = 2e-30
 Identities = 28/157 (17%), Positives = 66/157 (42%), Gaps = 6/157 (3%)

Query: 3   LAGELEAVIEVKASADKVHEVFSCRPH-IVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
           +  E     E+    + +  V S     +V  + P  V+  +LIEG+ G  G ++ + F 
Sbjct: 1   MVKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGG-VGTILIFNFL 59

Query: 62  RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
               +P   +E I   D+ ++    ++IEG  L      + +  K+++ ++    +LV  
Sbjct: 60  -PEVSPSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEE--DKTLVNV 116

Query: 122 TYKYEKQNENVPDLES-KVLEMMIDIVKNIDAYIIQH 157
              Y+  ++    +   K  +  +  ++ ++ Y+   
Sbjct: 117 KISYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLSNG 153

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score =  108 bits (270), Expect = 6e-30
 Identities = 36/180 (20%), Positives = 75/180 (41%), Gaps = 8/180 (4%)

Query: 1   MSLAGELEAVIEVKASADKVHEVFSC--RPHIVTSISPQSVQSCELIEGEWGKPGAVICW 58
            ++   +   +EV ASAD +  V+S       +  + P + +  E I G+ G  G ++  
Sbjct: 25  STVTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLE-IIGD-GGVGTILDM 82

Query: 59  TFTRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSL 118
           TF      P   KE   +VD+E+ +   ++IEG  L++    +     V          +
Sbjct: 83  TFV-PGEFPHEYKEKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGK--DSCV 139

Query: 119 VRFTYKYEKQNENVPDLESKV-LEMMIDIVKNIDAYIIQHEEARVDDTDEVLLVNVNSQE 177
           ++ + +Y  + E V  +E  +    +  +   I   +++H+     D  E  ++ V+   
Sbjct: 140 IKSSTEYHVKPEFVKIVEPLITTGPLAAMADAISKLVLEHKSKSNSDEIEAAIITVHHHH 199

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score = 95.8 bits (238), Expect = 9e-26
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 7/157 (4%)

Query: 7   LEAVIEVKASADKVHEVFSCRPH-IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAG 65
            E+    +    ++ + F      +V  I+PQ+++  E++EG  G PG +   TF     
Sbjct: 5   YESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEG-DGGPGTIKKITFG-EGS 62

Query: 66  NPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKY 125
               VK  I+ +D ENY   + LIEG+ L    +      K+       GGS+++ T  Y
Sbjct: 63  QYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPS--GGSIIKSTSHY 120

Query: 126 EKQNENVPDLES--KVLEMMIDIVKNIDAYIIQHEEA 160
             +       E      E   ++ K I+ Y+  H +A
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDA 157

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159

 Score = 94.7 bits (235), Expect = 3e-25
 Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 7/157 (4%)

Query: 7   LEAVIEVKASADKVHEVFSCRPH-IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAG 65
            E        A ++ + F      +   ++PQ++ S E IEG  G PG +   +F     
Sbjct: 5   YETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGG-PGTIKKISFPE-GF 62

Query: 66  NPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKY 125
             + VK+ ++ VD  N+   + +IEG  +    +   +  K+    +  GGS+++   KY
Sbjct: 63  PFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPN--GGSILKINNKY 120

Query: 126 EKQNENVPDLES--KVLEMMIDIVKNIDAYIIQHEEA 160
             + ++    E      EM   +++ +++Y++ H +A
Sbjct: 121 HTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDA 157

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A Length = 122

 Score = 90.0 bits (223), Expect = 7e-24
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 37/158 (23%)

Query: 2   SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
           +L G L    +VK  ADK    F                  E     + K G        
Sbjct: 2   TLKGALSVKFDVKCPADKFFSAFV-----------------EDTNRPFEKNG-------- 36

Query: 62  RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
                    K  IE VD        ++    + +  +K+      VT     + GS V +
Sbjct: 37  ---------KTEIEAVDLVKKTMTIQMSGSEIQKY-FKTLKGSIAVTPIGVGD-GSHVVW 85

Query: 122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHEE 159
           T+ +EK ++++ D    +++  +   K +D  I+  +E
Sbjct: 86  TFHFEKVHKDIDDPH-SIIDESVKYFKKLDEAILNFKE 122

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157

 Score = 90.8 bits (225), Expect = 9e-24
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 6/156 (3%)

Query: 7   LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGN 66
                    +  K+++  +     +       +QS EL+EG  G  G +   T       
Sbjct: 5   FRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGN-GGVGTIKKITAN-EGDK 62

Query: 67  PQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYE 126
              V + ++ +D+ N    + ++ G  L    +      KV         S+ + T K+ 
Sbjct: 63  TSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGG--SISKVTLKFH 120

Query: 127 KQNENVPDLES--KVLEMMIDIVKNIDAYIIQHEEA 160
            + +           L       K I+ Y++ +   
Sbjct: 121 TKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAE 156

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158

 Score = 89.0 bits (220), Expect = 5e-23
 Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 6/155 (3%)

Query: 7   LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGN 66
            +       +  K+++       I+   + +++QS E++EG  G PG +   TF    G 
Sbjct: 6   FQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGN-GGPGTIKKLTFI-EGGE 63

Query: 67  PQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYE 126
            + V   IE +D+ N    + ++ G  L    +      K+ +  +    S+ + T K E
Sbjct: 64  SKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGG--SIGKVTIKIE 121

Query: 127 KQNENVPDLES--KVLEMMIDIVKNIDAYIIQHEE 159
            + +  P+ E             K I++Y+  H +
Sbjct: 122 TKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD 156

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155

 Score = 87.4 bits (216), Expect = 2e-22
 Identities = 27/152 (17%), Positives = 62/152 (40%), Gaps = 5/152 (3%)

Query: 7   LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGN 66
            E       +  K+++  +     +     + +QS E++EG  G PG +       + G+
Sbjct: 5   FENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGN-GGPGTIKKIIAI-HDGH 62

Query: 67  PQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYE 126
              V   ++ +D+ N    + +I G  L+   +     +K+    D  GGS+ +   K+ 
Sbjct: 63  TSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPD--GGSIGKINVKFH 120

Query: 127 KQNENVPDLESKV-LEMMIDIVKNIDAYIIQH 157
            + + + +          + + K I+ Y++ H
Sbjct: 121 TKGDVLSETVRDQAKFKGLGLFKAIEGYVLAH 152

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165

 Score = 86.3 bits (213), Expect = 7e-22
 Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 8/160 (5%)

Query: 4   AGELEAVIEVKASADKVHEVFSCRPH-IVTSISPQSVQSCELIEGEWGKPGAVICWTFTR 62
           A  +    E   +  ++ +      H ++    P   +S E+IEG+ G  G V   TF  
Sbjct: 9   AYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGG-VGTVTKITFV- 66

Query: 63  YAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFT 122
                  +    + +D  N+   + L EG+VL    +      K+         S  + T
Sbjct: 67  DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVGGG---SKGKIT 123

Query: 123 YKYEKQNENVPDLES--KVLEMMIDIVKNIDAYIIQHEEA 160
             Y  +     + E      +   +  K ++ Y+  + E 
Sbjct: 124 VTYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEV 163

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190

 Score = 52.1 bits (124), Expect = 6e-09
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 10/128 (7%)

Query: 10  VIEVKASADKVHEVFS--CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP 67
              + A A  V  +      P          V+ C LI G+ G  G+V   T    +G P
Sbjct: 40  TQRIHAPASVVWPLIRRFDNPERY----KHFVKRCRLISGD-GDVGSVREVTVI--SGLP 92

Query: 68  -QIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYE 126
                E +E VDD++ +  F+++ G      YKS  SV +   +D  +  ++V  +Y  +
Sbjct: 93  ASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVD 152

Query: 127 KQNENVPD 134
               N  +
Sbjct: 153 IPEGNTEE 160

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Length = 151

 Score = 51.3 bits (122), Expect = 7e-09
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 11/141 (7%)

Query: 5   GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA 64
             L   +EV A A  V  +       +    P  V +  L       PGA   +      
Sbjct: 2   ATLRRSVEVAAPAADVWTLVG-DFSAIHRWHP-QVSAPTLRGASPHTPGAERVFGA---- 55

Query: 65  GNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYK 124
           G  + + E +   D+     ++ + +       +++   V         +    V +T  
Sbjct: 56  GTEEELVERLVERDESARRLVYTMPDPPFPITNHRAVLEV-----VPRDDRHCTVVWTAM 110

Query: 125 YEKQNENVPDLESKVLEMMID 145
           ++   E   +LES + + +  
Sbjct: 111 FDCSPETARELESVIGDGVFA 131

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Length = 211

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 10  VIEVKASADKVHEVFS--CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP 67
              + A  + V  +     +P          ++SC + +    + G          +G P
Sbjct: 55  AQRIHAPPELVWSIVRRFDKPQTY----KHFIKSCSVEQNFEMRVGCTRDVIVI--SGLP 108

Query: 68  -QIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSV 104
                E ++++DDE  +T F +I G      YKS  +V
Sbjct: 109 ANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTV 146

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Length = 208

 Score = 43.6 bits (102), Expect = 8e-06
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 10  VIEVKASADKVHEVFS--CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP 67
              + A  + V  V     RP I        ++SC + E    + G          +G P
Sbjct: 59  AQRIHAPPETVWSVVRRFDRPQIY----KHFIKSCNVSEDFEMRVGCT--RDVNVISGLP 112

Query: 68  -QIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYE 126
               +E ++++DD+  +T F +  G      YKS  +V +     + E      +T   E
Sbjct: 113 ANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRF----EKEEEEERIWTVVLE 168

Query: 127 KQNENVPD 134
               +VP+
Sbjct: 169 SYVVDVPE 176

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Length = 160

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 16/149 (10%), Positives = 43/149 (28%), Gaps = 16/149 (10%)

Query: 6   ELEAVIEVKASADKVHEVFS--CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY 63
           ++   I V A  ++V                 P  ++SC+ + G  G           R 
Sbjct: 3   KVYNSIVVDAPVERVWSRIRNFHDFSWA----PSLIKSCKKVGGGGGYSV-----GARRL 53

Query: 64  AGNPQIVKELIEVVDDENYITIFKLIEGN--VLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
                   + +    +     ++ + EG   V      ++     +         + V +
Sbjct: 54  LNGE--FLDTLIAYSEIERRIMYSMDEGPSPVSSGEIYNYVGNLHLLPVTID-DTTFVEW 110

Query: 122 TYKYEKQNENVPDLESKVLEMMIDIVKNI 150
           +  +E  +    +  + V   ++  +   
Sbjct: 111 SGSWESASTEAVEYMNTVYRSLLADLAAE 139

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Length = 183

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 39  VQSCELIEGEWGKPGAVICWTFTRYAGNPQ-IVKELIEVVDDENYITIFKLIEGNVLEML 97
           +  C  ++G+  + G+V        +G P     E++E++DD  +I   +++ G+     
Sbjct: 59  ISRCV-VQGKKLEVGSVREVDLK--SGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKN 115

Query: 98  YKSFCSVAKVTQKDDHEGGSLVRFTYKYE 126
           Y S  S+    +  D + G+L   ++  +
Sbjct: 116 YSSTISLHS--ETIDGKTGTLAIESFVVD 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	100.0
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	100.0
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	100.0
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	100.0
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	100.0
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	100.0
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	100.0
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	100.0
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	100.0
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	100.0
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	100.0
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	100.0
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.98
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	99.97
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	99.96
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	99.96
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	99.96
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	99.96
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.95
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	99.94
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.94
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	99.93
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.91
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.6
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.58
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.53
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.51
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.46
2pcs_A	162	Conserved protein; structural genomics, unknown fu	99.33
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.29
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	99.21
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	99.14
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	99.01
2leq_A	146	Uncharacterized protein; start domains, structural	98.91
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	98.86
2lcg_A	142	Uncharacterized protein; start domain, structural	98.78
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	98.7
2il5_A	171	Hypothetical protein; structural genomics, APC2365	98.69
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	98.65
3put_A	166	Hypothetical conserved protein; structural genomic	98.65
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	98.63
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	98.62
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	98.59
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	98.58
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.53
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	98.5
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	98.5
1xn5_A	146	BH1534 unknown conserved protein; structural genom	98.5
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.47
2ldk_A	172	Uncharacterized protein; structural genomics, nort	98.4
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.39
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	98.3
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	98.29
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.25
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	98.25
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	98.23
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	98.22
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	98.1
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	97.96
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	97.81
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	97.79
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	97.77
3qsz_A	189	STAR-related lipid transfer protein; structural ge	97.62
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	97.61
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	97.58
2luz_A	192	CALU16; structural genomics, northeast structural	97.43
2lio_A	136	Uncharacterized protein; structural genomics, nort	97.18
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	96.52
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	95.97
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	95.95
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	95.7
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	93.96
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	93.4
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	91.91
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	91.76
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	88.07

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=100.00  E-value=4.9e-46  Score=293.46  Aligned_cols=155  Identities=21%  Similarity=0.276  Sum_probs=143.0

Q ss_pred             cceEEEEEEEEcCCHHHHHHHH-hcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCc
Q 030045            3 LAGELEAVIEVKASADKVHEVF-SCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDEN   81 (183)
Q Consensus         3 ~~~~~~~ei~i~apa~~vw~~~-~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~   81 (183)
                      .+++++.|++|++||++||+++ +||.+++|+|+|+.|++|++++|+ |++||||.|+|. +|++.+++||||+++|+++
T Consensus         8 g~~~~~~ev~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGd-g~~Gsir~~~~~-~g~~~~~~kErl~~iD~~~   85 (165)
T 3ie5_A            8 AAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGD-GGVGTVTKITFV-DGHPLTYMLHKFDEIDAAN   85 (165)
T ss_dssp             SCEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESS-SSTTCEEEEEEC-TTSSCCEEEEEEEEEEGGG
T ss_pred             eeEEEEEEEEecCCHHHHHHHhcCCccccchhhCCcccceEEEecCC-CCCCeEEEEEec-CCCCCceEEEEEEEEchhc
Confidence            3499999999999999999995 788667799999999999999999 899999999999 8888889999999999999


Q ss_pred             eEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhhChh
Q 030045           82 YITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYIIQHEE  159 (183)
Q Consensus        82 ~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl~~~~  159 (183)
                      |+|+|+++||++|+.+|++|+++++|.+  + +|||+|+|+++|+++++..++|+. + +++++.+|+|+||+||++||+
T Consensus        86 ~~~~Y~iieG~~l~~~~~~y~~~i~v~~--~-~ggs~vkwt~~y~~~~~~~~~~e~~k~~~~~~~~~~K~ie~yllanp~  162 (165)
T 3ie5_A           86 FYCKYTLFEGDVLRDNIEKVVYEVKLEA--V-GGGSKGKITVTYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPE  162 (165)
T ss_dssp             TEEEEEEEEEGGGTTTEEEEEEEEEEEE--E-TTEEEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CEEEEEEecCCCCccceEEEEEEEEEEe--C-CCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence            9999999999988557999999999994  3 779999999999999998777776 4 689999999999999999999


Q ss_pred             hhh
Q 030045          160 ARV  162 (183)
Q Consensus       160 ~~~  162 (183)
                      +|+
T Consensus       163 ~~~  165 (165)
T 3ie5_A          163 VFA  165 (165)
T ss_dssp             TTC
T ss_pred             hhC
Confidence            985

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=100.00  E-value=6.9e-46  Score=290.78  Aligned_cols=155  Identities=23%  Similarity=0.386  Sum_probs=142.9

Q ss_pred             ceEEEEEEEEcCCHHHHHHHH-hcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            4 AGELEAVIEVKASADKVHEVF-SCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~-~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      +-+++.|++|++||++||+++ +||.+++|+|+|+.|++|+++||| |++||||.|+|. +|++.+++||||+++|+++|
T Consensus         2 ~~~~~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGd-gg~Gsir~~~~~-~g~~~~~~kErl~~iD~~~~   79 (159)
T 4a8u_A            2 VFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGN-GGPGTIKKISFP-EGFPFKYVKDRVDEVDHTNF   79 (159)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECS-SSTTCEEEEECC-TTSSCSEEEEEEEEEETTTT
T ss_pred             cEEEEEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCC-CCCceEEEEEEe-cCCCccEEEEEEEEEccccC
Confidence            468899999999999999999 898777999999999999999999 689999999999 88888899999999999999


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhhChhh
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYIIQHEEA  160 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl~~~~~  160 (183)
                      +++|+++||++++.+|++|.++++|.|. + +|||+|+|+++|++.++..++|+. + +++++.+|+|+||+||++||++
T Consensus        80 ~~~y~iiegd~l~~~~~~y~~ti~v~p~-~-~ggs~v~wt~~y~~~~~~~~~~~~~k~~~~~~~~~~k~ie~yll~np~~  157 (159)
T 4a8u_A           80 KYSYSVIEGGPVGDTLEKISNEIKIVAT-P-NGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDA  157 (159)
T ss_dssp             EEEEEEEEETTCBTTEEEEEEEEEEEEC-T-TSCEEEEEEEEEEESSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             EEEEEEeeCCCCccceEEEEEEEEEEEC-C-CCceEEEEEEEEEECCCCcCCHHHHHHHHHHHHHHHHHHHHHHhhChhh
Confidence            9999999999986579999999999997 4 678999999999999998777775 4 6999999999999999999999


Q ss_pred             hh
Q 030045          161 RV  162 (183)
Q Consensus       161 ~~  162 (183)
                      |+
T Consensus       158 ~~  159 (159)
T 4a8u_A          158 YN  159 (159)
T ss_dssp             TC
T ss_pred             hC
Confidence            85

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=100.00  E-value=1.4e-43  Score=276.58  Aligned_cols=150  Identities=21%  Similarity=0.255  Sum_probs=136.9

Q ss_pred             cceEEEEEEEEcCCHHHHHHHHh-cCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCc
Q 030045            3 LAGELEAVIEVKASADKVHEVFS-CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDEN   81 (183)
Q Consensus         3 ~~~~~~~ei~i~apa~~vw~~~~-d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~   81 (183)
                      .+++++.|+++++||+|+|+++. |+.+++|||+|+.|++++ ++|| |++||||.|+|. .|++..++||||+++|+++
T Consensus         2 gv~~~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~-veGd-g~~Gsir~~t~~-~g~~~~~~kErle~iD~~~   78 (154)
T 2wql_A            2 GAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVE-VKGD-GGAGTVRIITLP-EGSPITTMTVRTDAVNKEA   78 (154)
T ss_dssp             -CCEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEE-EESS-SSTTCEEEEECC-TTCSCCEEEEEEEEEETTT
T ss_pred             CCeEEEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEE-EECC-CCCCeEEEEEEc-CCCCceEEEEEEEEEehhh
Confidence            56999999999999999999875 776688999999999999 5899 789999999999 8888899999999999999


Q ss_pred             eEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhhC
Q 030045           82 YITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus        82 ~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl~~  157 (183)
                      |+|+|++||||++..+|++|.++++|.|. + +|||+++|+++|++.++..++|+. + .++.+.++||+||+|||+|
T Consensus        79 ~~~~y~iieGd~l~~~~~~~~~~ikv~p~-~-~ggsvvk~t~~Y~~~~~~~~~ee~~~~~~~~~~~~~KaiEayLlan  154 (154)
T 2wql_A           79 LSYDSTVIDGDILLGFIESIETHMVVVPT-A-DGGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN  154 (154)
T ss_dssp             TEEEEEEEESGGGTTTEEEEEEEEEEEEC-T-TSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEEEeccccccceEEEEEEEEEeeC-C-CCcEEEEEEEEEEECCCCCCCHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence            99999999999887699999999999997 4 789999999999999998777776 3 6677899999999999998

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=100.00  E-value=2.5e-43  Score=275.51  Aligned_cols=156  Identities=26%  Similarity=0.385  Sum_probs=143.2

Q ss_pred             cceEEEEEEEEcCCHHHHHHHHh-cCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCc
Q 030045            3 LAGELEAVIEVKASADKVHEVFS-CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDEN   81 (183)
Q Consensus         3 ~~~~~~~ei~i~apa~~vw~~~~-d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~   81 (183)
                      .+++++.+++|++||++||++++ |+.+++|+|+|+.|++|++++|+ |++||||.|+|. +|.+..++||||+++|+++
T Consensus         1 ~~~~~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGd-gg~Gsvr~~~~~-~G~~~~~~kErl~~~D~~~   78 (159)
T 1e09_A            1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGD-GGPGTIKKITFG-EGSQYGYVKHKIDSIDKEN   78 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESS-SSTTCEEEEEEC-CSSSCEEEEEEEEEEETTT
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCC-CCCceEEEEEec-CCCCceEEEEEEEEEcCCC
Confidence            36899999999999999999999 98668999999999999999999 589999999998 7766689999999999999


Q ss_pred             eEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhhChh
Q 030045           82 YITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYIIQHEE  159 (183)
Q Consensus        82 ~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl~~~~  159 (183)
                      |+++|+++||+++.++|++|.++++|.|. + +|||+|+|+++|++.++..++|+. + .++++.+|+|+||+||++||+
T Consensus        79 ~~~~y~iieG~~~~~~~~~~~~~~~v~~~-~-~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~~~  156 (159)
T 1e09_A           79 YSYSYTLIEGDALGDTLEKISYETKLVAS-P-SGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPD  156 (159)
T ss_dssp             TEEEEEECCCTTTGGGEEEEEEEEEECCC-T-TSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CEEEEEEEecccCcccceEEEEEEEEEec-C-CCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence            99999999999987689999999999997 3 678999999999999988777776 3 589999999999999999999


Q ss_pred             hhh
Q 030045          160 ARV  162 (183)
Q Consensus       160 ~~~  162 (183)
                      +|+
T Consensus       157 ~~~  159 (159)
T 1e09_A          157 AYN  159 (159)
T ss_dssp             SCC
T ss_pred             hcC
Confidence            985

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=100.00  E-value=2.8e-42  Score=269.17  Aligned_cols=154  Identities=18%  Similarity=0.249  Sum_probs=140.7

Q ss_pred             cceEEEEEEEEcCCHHHHHHHHh-cCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCc
Q 030045            3 LAGELEAVIEVKASADKVHEVFS-CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDEN   81 (183)
Q Consensus         3 ~~~~~~~ei~i~apa~~vw~~~~-d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~   81 (183)
                      .+++++.+++|++||++||++++ |+.+++|+|+| .|++|+++||+ |++||||.|+|. +|++.+++||||+++|+++
T Consensus         1 ~~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~-~i~s~~i~eG~-g~~Gsir~~~~~-~G~~~~~~kErl~~~D~~~   77 (157)
T 1tw0_A            1 GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKIDG-PIQSIELVEGN-GGVGTIKKITAN-EGDKTSFVLQKVDAIDEAN   77 (157)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHHTGGGGGGGSCS-SEEEEEEEESS-SSTTCEEEEEEE-ETTEEEEEEEEEEEEETTT
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCcchhhhhHHh-hccEEEEEeCC-CCCCeEEEEEee-CCCccceEEEEEEEEeccC
Confidence            36899999999999999999999 99778999995 89999999999 599999999999 7776689999999999999


Q ss_pred             eEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhhChh
Q 030045           82 YITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYIIQHEE  159 (183)
Q Consensus        82 ~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl~~~~  159 (183)
                      |+++|+++||++++..|++|.++++|.|. + ++||+|+|+++|++.++..++|+. + .++++.+|+|+||+||++||+
T Consensus        78 ~~~~y~iieGd~~~~~~~~~~~~~~v~~~-~-~~gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~p~  155 (157)
T 1tw0_A           78 LGYDYSIVGGTGLPESLEKLSFETKVVAG-S-GGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPA  155 (157)
T ss_dssp             TEEEEEEEECTTSCTTEEEEEEEEEEEEC-S-SSSEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             CEEEEEEEecCCCccceEEEEEEEEEEec-C-CCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            99999999999875469999999999997 3 678999999999999988777766 3 589999999999999999999


Q ss_pred             hh
Q 030045          160 AR  161 (183)
Q Consensus       160 ~~  161 (183)
                      +|
T Consensus       156 ~~  157 (157)
T 1tw0_A          156 EY  157 (157)
T ss_dssp             GC
T ss_pred             cC
Confidence            87

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=100.00  E-value=8.9e-43  Score=271.76  Aligned_cols=150  Identities=18%  Similarity=0.308  Sum_probs=130.1

Q ss_pred             CCcceEEEEEEEEcCCHHHHHHH-HhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC-CCcceEEEEEEeec
Q 030045            1 MSLAGELEAVIEVKASADKVHEV-FSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA-GNPQIVKELIEVVD   78 (183)
Q Consensus         1 m~~~~~~~~ei~i~apa~~vw~~-~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g-g~~~~~kErl~~iD   78 (183)
                      |+  ++++.++++++||++||++ ++|+.+++|+|+|+.|++|+++||| |++||||.|+|. +| ++ .++||||+++|
T Consensus         1 M~--~~~~~e~~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eGd-gg~Gsvr~~~~~-~g~~~-~~~kErl~~iD   75 (155)
T 2flh_A            1 MV--KEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGD-GGVGTILIFNFL-PEVSP-SYQREEITEFD   75 (155)
T ss_dssp             CC--EEEEEEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECS-SSTTCEEEEEEC-TTSSS-CEEEEEEEEEE
T ss_pred             CC--cEEEEEEEecCCHHHHHHHHhcccccccchhccccceEEEEEcCC-CCCCeEEEEEee-CCCCC-cEEEEEEEEEe
Confidence            77  9999999999999999999 6899777799999999999999999 799999999999 77 55 79999999999


Q ss_pred             CCceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHH--HHHHHHHHHHHHHHhh
Q 030045           79 DENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVL--EMMIDIVKNIDAYIIQ  156 (183)
Q Consensus        79 ~~~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~--~~~~~~~k~ie~yLl~  156 (183)
                      +++|+++|+++||+++..+|++|.++++|.|. + +|||+|+|+++|++.++..+.+.. ++  +++.+++|+||+||++
T Consensus        76 ~~~~~~~y~iieg~~l~~~~~~~~~~i~v~p~-~-~ggs~v~wt~~y~~~~~~~~~~~~-~~~~~~~~~~~k~ie~yll~  152 (155)
T 2flh_A           76 ESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEI-E-EDKTLVNVKISYDHDSDIEEKVTP-TKTSQSTLMYLRRLERYLSN  152 (155)
T ss_dssp             TTTTEEEEEEEEEGGGGTTCSEEEEEEEEEEE-E-TTEEEEEEEEEEEC-------CCH-HHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCEEEEEEEeccccccCceEEEEEEEEEEC-C-CCCEEEEEEEEEEECCCCccChhH-hhhHHHHHHHHHHHHHHHhh
Confidence            99999999999999876689999999999997 4 678999999999999887554544 78  9999999999999999


Q ss_pred             Ch
Q 030045          157 HE  158 (183)
Q Consensus       157 ~~  158 (183)
                      +|
T Consensus       153 ~~  154 (155)
T 2flh_A          153 GS  154 (155)
T ss_dssp             --
T ss_pred             CC
Confidence            87

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=100.00  E-value=6e-43  Score=275.52  Aligned_cols=154  Identities=38%  Similarity=0.740  Sum_probs=142.1

Q ss_pred             CCcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCC
Q 030045            1 MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDE   80 (183)
Q Consensus         1 m~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~   80 (183)
                      |+++|+++.+++|++||++||+++++..+.+|+|+|+.|++|++++|+||++||||.|+|. .|++..++||||+++|++
T Consensus        13 ~~~~~k~~~ev~i~apa~kvw~~~~~d~~~lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~-~gg~~~~~kErl~~iD~~   91 (166)
T 2i9y_A           13 SSLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV-HDGEAKVAKERIEAVEPD   91 (166)
T ss_dssp             SSSEEEEEEEEEESSCHHHHHGGGSSCSSCCCCSCSSCCSSCCCCSCCSCSTTCCCEEEEE-ETTEEEEEEEEEEEEETT
T ss_pred             cCCccEEEEEEEecCCHHHHHHHHhcccccccccccccceEEEEEcCCCCCCCeEEEEEEe-cCCCceEEEEEEEEEecc
Confidence            8999999999999999999999987444789999999999999999998899999999999 788778999999999999


Q ss_pred             ceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhCh
Q 030045           81 NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE  158 (183)
Q Consensus        81 ~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~~~  158 (183)
                      +++|+|+++||+++. +|++|.++++|.|.++ ++||+|+|+++|++.++..++|.. +++++..|+|+||+||++||
T Consensus        92 ~~~~~y~iieGd~~~-~~~~~~~ti~v~p~~~-g~gs~v~wt~~ye~~~~~~~~p~~-~~~~~~~~~k~ie~~l~~~~  166 (166)
T 2i9y_A           92 KNLITFRVIEGDLMK-EYKSFLLTIQVTPKPG-GPGSIVHWHLEYEKISEEVAHPET-LLQFCVEVSKEIDEHLLAEE  166 (166)
T ss_dssp             TTEEEEEECCTTGGG-TEEEEEEEEEEEEEEE-TTEEEEEEEEEEEESSTTTCCTHH-HHHHHHHHHHHHHHHHHSCC
T ss_pred             CcEEEEEEEeCCCCC-CeeEEEEEEEEEECCC-CCCcEEEEEEEEEECCCCCCCHHH-HHHHHHHHHHHHHHHHhhCC
Confidence            999999999999854 8999999999999733 458999999999999988777876 89999999999999999986

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=100.00  E-value=2.7e-42  Score=269.45  Aligned_cols=155  Identities=23%  Similarity=0.322  Sum_probs=140.2

Q ss_pred             CCcceEEEEEEEEcCCHHHHHHHHh-cCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecC
Q 030045            1 MSLAGELEAVIEVKASADKVHEVFS-CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDD   79 (183)
Q Consensus         1 m~~~~~~~~ei~i~apa~~vw~~~~-d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~   79 (183)
                      |+ +++++.+++|++||++||++++ |+.+++|+|+| .|++|++++|+ |++||||.|+|. +|++.+++||||+++|+
T Consensus         1 M~-~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~-~i~s~~i~eGd-gg~Gsir~~~~~-~g~~~~~~kErl~~~D~   76 (158)
T 2qim_A            1 MG-VFTFQDEYTSTIAPAKLYKALVTDADIIIPKAVE-TIQSVEIVEGN-GGPGTIKKLTFI-EGGESKYVLHKIEAIDE   76 (158)
T ss_dssp             -C-EEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCT-TEEEEEEEESS-SSTTCEEEEEEE-ETTEEEEEEEEEEEEEG
T ss_pred             CC-CEEEEEEEEecCCHHHHHHHHhcCccchhhhHHh-hCcEEEEEecC-CCCCeEEEEEEc-CCCcceeEEEEEEEEec
Confidence            55 4899999999999999999999 98768899995 89999999999 599999999999 77766899999999999


Q ss_pred             CceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhhC
Q 030045           80 ENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus        80 ~~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl~~  157 (183)
                      ++|+++|+++||++++..|++|.++++|.|. + +|||+|+|+++|++.++..++|+. + .++.+.+|+|+||+||++|
T Consensus        77 ~~~~~~y~iieG~~~~~~~~~~~~~~~v~~~-~-~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~  154 (158)
T 2qim_A           77 ANLGYNYSIVGGVGLPDTIEKISFETKLVEG-A-NGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAH  154 (158)
T ss_dssp             GGTEEEEEEEEESSCCCSEEEEEEEEEEEEC-S-TTCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEEEEeccCCccceEEEEEEEEEEec-C-CCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999875469999999999997 3 678999999999999988777765 3 5899999999999999999


Q ss_pred             hhhhh
Q 030045          158 EEARV  162 (183)
Q Consensus       158 ~~~~~  162 (183)
                      |+ |+
T Consensus       155 p~-~~  158 (158)
T 2qim_A          155 PD-YN  158 (158)
T ss_dssp             SS-CC
T ss_pred             cC-cC
Confidence            99 74

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=100.00  E-value=2e-41  Score=263.74  Aligned_cols=152  Identities=18%  Similarity=0.306  Sum_probs=138.4

Q ss_pred             cceEEEEEEEEcCCHHHHHHHHh-cCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCc
Q 030045            3 LAGELEAVIEVKASADKVHEVFS-CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDEN   81 (183)
Q Consensus         3 ~~~~~~~ei~i~apa~~vw~~~~-d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~   81 (183)
                      .+++++.+++|++||++||++++ |+.+++|+|+| .|++|+++||+ |++||||.|+|. +|++.+++||||+++|+++
T Consensus         1 ~~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~-~i~s~~i~eG~-g~~Gsir~~~~~-~G~~~~~~kErl~~~D~~~   77 (155)
T 1icx_A            1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIE-PIQSVEIVEGN-GGPGTIKKIIAI-HDGHTSFVLHKLDAIDEAN   77 (155)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHST-TEEEEEEEESS-SSTTCEEEEEEE-SSSSEEEEEEEEEEEEGGG
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCcchhcchhhh-hccEEEEEecC-CCCCeEEEEEEe-cCCcceeEEEEEEEEeccC
Confidence            36899999999999999999999 98778999995 89999999999 599999999999 7777789999999999999


Q ss_pred             eEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhhChh
Q 030045           82 YITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYIIQHEE  159 (183)
Q Consensus        82 ~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl~~~~  159 (183)
                      |+++|+++||++++..|++|.++++|.|. + ++||+|+|+++|++.++. ++|+. + .++++.+|+|+||+||++||+
T Consensus        78 ~~~~y~iieGd~~~~~~~~~~~~~~v~~~-~-~~gs~v~w~~~y~~~~~~-~~~~~~~~~~~~~~~~~k~ie~yll~~p~  154 (155)
T 1icx_A           78 LTYNYSIIGGEGLDESLEKISYESKILPG-P-DGGSIGKINVKFHTKGDV-LSETVRDQAKFKGLGLFKAIEGYVLAHPD  154 (155)
T ss_dssp             TEEEEEEEEETTSCTTEEEEEEEEEEEEC-G-GGCEEEEEEEEEEESSSS-CCHHHHTTHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CEEEEEEEecCCCccceEEEEEEEEEEec-C-CCCEEEEEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999875469999999999997 3 568999999999999988 77765 2 489999999999999999997


Q ss_pred             h
Q 030045          160 A  160 (183)
Q Consensus       160 ~  160 (183)
                      +
T Consensus       155 ~  155 (155)
T 1icx_A          155 Y  155 (155)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=100.00  E-value=5.2e-42  Score=278.06  Aligned_cols=155  Identities=21%  Similarity=0.342  Sum_probs=139.6

Q ss_pred             CCcceEEEEEEEEcCCHHHHHHHH-h-cCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeec
Q 030045            1 MSLAGELEAVIEVKASADKVHEVF-S-CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVD   78 (183)
Q Consensus         1 m~~~~~~~~ei~i~apa~~vw~~~-~-d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD   78 (183)
                      |+++|+++.+++|++||++||+++ + ||.+++|+|+|++|++|+++ || |++||||.|+|. +|++..++||||+++|
T Consensus        25 ~~~~g~~~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-Gd-Gg~GsIR~lt~~-~G~~~~~vkErle~iD  101 (201)
T 2vq5_A           25 STVTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GD-GGVGTILDMTFV-PGEFPHEYKEKFILVD  101 (201)
T ss_dssp             CCEEEEEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SS-SSTTCEEEEECC-TTCSSCEEEEEEEEEE
T ss_pred             cccceEEEEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cC-CCCCeEEEEEec-CCCcccEEEEEEEEEc
Confidence            789999999999999999999996 5 88778899999999999999 99 789999999999 7877789999999999


Q ss_pred             CCceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-HHHHHHHHHHHHHHHHHhhC
Q 030045           79 DENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-KVLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus        79 ~~~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~~~~~~~~~~k~ie~yLl~~  157 (183)
                      +++|+|+|+++||+++..+|++|.++++|.|. + +|||+|+|+++|++.++..++|+. .+++++.+++|+||+||++|
T Consensus       102 de~~~~sYsiieGd~l~~~~~~y~~tikv~p~-~-dggs~vkWt~~ye~~~~~~~~~e~~~~~~~~~~~~KaiE~yLlan  179 (201)
T 2vq5_A          102 NEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPT-G-KDSCVIKSSTEYHVKPEFVKIVEPLITTGPLAAMADAISKLVLEH  179 (201)
T ss_dssp             TTTTEEEEEEEEEGGGGTTEEEEEEEEEEEEE-E-TTEEEEEEEEEEEECGGGHHHHTTTCCSHHHHHHHHHHHHHHHSC
T ss_pred             hhhCEEEEEEEecCccccceeEEEEEEEEEEC-C-CCCeEEEEEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999886689999999999997 4 678999999999999876322222 27889999999999999999


Q ss_pred             hhh
Q 030045          158 EEA  160 (183)
Q Consensus       158 ~~~  160 (183)
                      |+.
T Consensus       180 p~~  182 (201)
T 2vq5_A          180 KSK  182 (201)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            963

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.98  E-value=1.6e-31  Score=200.63  Aligned_cols=122  Identities=23%  Similarity=0.332  Sum_probs=107.5

Q ss_pred             CCcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCC
Q 030045            1 MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDE   80 (183)
Q Consensus         1 m~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~   80 (183)
                      |+++|+++.+++|++||+|||++++++ +++| |.+               +           |.   .   ||+++|++
T Consensus         1 m~~~g~~~~e~~i~~~a~k~w~~~~~~-~~~p-~g~---------------~-----------G~---~---~ie~iD~~   46 (122)
T 1vjh_A            1 STLKGALSVKFDVKCPADKFFSAFVED-TNRP-FEK---------------N-----------GK---T---EIEAVDLV   46 (122)
T ss_dssp             CCSEEEEEEEEEESSCHHHHHHHHHHH-TTSC-SST---------------T-----------CE---E---EEEEEETT
T ss_pred             CCCCcEEEEEEEecCCHHHHHHHHhhc-ccCC-ccC---------------C-----------Cc---c---EEEEEecc
Confidence            999999999999999999999999987 7777 422               1           11   1   99999999


Q ss_pred             ceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhChh
Q 030045           81 NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHEE  159 (183)
Q Consensus        81 ~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~~~~  159 (183)
                      ||+|+|+++||+++. +|++|.++++|+|..+ ++||+|+|+++|++.++..++|+. +++++.+++|+||+||++|||
T Consensus        47 ~~~~~y~iieGd~~~-~~~~~~~~~~v~~~~~-~~gs~vkwt~~ye~~~~~~~~p~~-~~~~~~~~~k~ie~yll~~p~  122 (122)
T 1vjh_A           47 KKTMTIQMSGSEIQK-YFKTLKGSIAVTPIGV-GDGSHVVWTFHFEKVHKDIDDPHS-IIDESVKYFKKLDEAILNFKE  122 (122)
T ss_dssp             TTEEEEEEECTTGGG-TEEEEEEEEEEEECSS-SSCEEEEEEEEEEESSTTSCCSHH-HHHHHHHHHHHHHHHHHHC--
T ss_pred             cCEEEEEEEEccccc-cEEEEEEEEEEEEecC-CCCeEEEEEEEEEECCCCCCCHHH-HHHHHHHHHHHHHHHHhhCCC
Confidence            999999999999886 8999999999999732 568999999999999998888887 999999999999999999996

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=99.97  E-value=8.1e-30  Score=207.36  Aligned_cols=140  Identities=16%  Similarity=0.138  Sum_probs=108.8

Q ss_pred             EEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEEE
Q 030045            9 AVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKL   88 (183)
Q Consensus         9 ~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~v   88 (183)
                      ...+|+|||++||++++|| +.+|+|+| .|++|++++|+++++|+||.|+|. .|++..++||||+++|+++|+|+|+|
T Consensus        58 v~~~I~ApadkVW~lv~Df-~~l~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~-~G~p~~~vkErL~~lDde~~~~sYsI  134 (208)
T 3jrs_A           58 LAQRIHAPPETVWSVVRRF-DRPQIYKH-FIKSCNVSEDFEMRVGCTRDVNVI-SGLPANTSRERLDLLDDDRRVTGFSI  134 (208)
T ss_dssp             EEEEESSCHHHHHHHHTCT-TCGGGTCT-TEEEEECCTTCCCSTTCEEEEEEC-TTSSCCEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHhCc-CChhHccc-cceEEEEecCCCCCCCeEEEEEec-CCCccceEEEEEEEEeccCCEEEEEE
Confidence            3457999999999999998 45699999 899999999987799999999999 78777899999999999999999999


Q ss_pred             EeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH--HHHHHHHHHHHHHHHHHh
Q 030045           89 IEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES--KVLEMMIDIVKNIDAYII  155 (183)
Q Consensus        89 iEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~--~~~~~~~~~~k~ie~yLl  155 (183)
                      ++|++   ++++|.++|+|.|..+ +++|.|+|+++|++.....|++..  +...++.++++.--+-|.
T Consensus       135 ieG~l---pv~~Y~sti~V~p~~~-g~~t~V~Wt~~fes~~~D~p~g~~~e~a~~~~~~vy~~gL~~L~  199 (208)
T 3jrs_A          135 TGGEH---RLRNYKSVTTVHRFEK-EEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLA  199 (208)
T ss_dssp             EESSS---SCTTCEEEEEEEEEEC------CEEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeCCc---ceeeEEEEEEEEEccC-CCccEEEEEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99996   7889999999999633 568999999999953322222221  155555556655444443

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=99.96  E-value=1e-28  Score=197.47  Aligned_cols=138  Identities=16%  Similarity=0.206  Sum_probs=111.3

Q ss_pred             EEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEEE
Q 030045            9 AVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKL   88 (183)
Q Consensus         9 ~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~v   88 (183)
                      ...+|+|||++||++++||. .+|+|+| .|++| .++|++|++|+||.|+|. +|.+..++||||+++|+++|+|+|+|
T Consensus        31 v~~~I~Apa~~VW~~v~df~-~l~~w~P-~V~s~-~~eG~~ggvGsvR~lt~~-~G~p~~~vkErL~~~D~~~~~~sY~I  106 (183)
T 3rt2_A           31 LVKHIKAPLHLVWSIVRRFD-EPQKYKP-FISRC-VVQGKKLEVGSVREVDLK-SGLPATKSTEVLEILDDNEHILGIRI  106 (183)
T ss_dssp             EEEEESSCHHHHHHHHTCTT-CGGGTCT-TEEEE-EESSSCCCTTCEEEEEEC-CSSTTCEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHhCcC-chhhcCc-cceEE-EeeCCCCCCCcEEEEEeC-CCCccceEEEEEEEEECCCCEEEEEE
Confidence            44589999999999999984 5799999 79999 678944899999999999 77666799999999999999999999


Q ss_pred             EeccccccceEEEEEEEEEEeee-CCCC-CeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhC
Q 030045           89 IEGNVLEMLYKSFCSVAKVTQKD-DHEG-GSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus        89 iEG~~l~~~~~sy~~t~~v~p~~-~~~g-gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~~  157 (183)
                      ++|++   +|++|.++|+|.|.. + ++ ||+|+|+++|++..+..  .+. ...++..+++.--+-|.+.
T Consensus       107 ieg~l---p~~~y~ati~v~p~~~d-G~~gt~V~Ws~~fd~~~g~~--~e~-~~~~~~~i~~~~L~~L~~~  170 (183)
T 3rt2_A          107 VGGDH---RLKNYSSTISLHSETID-GKTGTLAIESFVVDVPEGNT--KEE-TCFFVEALIQCNLNSLADV  170 (183)
T ss_dssp             EEESC---SCTTCEEEEEEEEEEET-TEEEEEEEEEEEEECCTTCC--HHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCc---ceeEEEEEEEEEEecCC-CCCCEEEEEEEEEEcCCCCC--HHH-HHHHHHHHHHHHHHHHHHH
Confidence            99986   799999999999973 2 33 79999999999765442  222 4555555555544444443

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=99.96  E-value=4.1e-28  Score=194.97  Aligned_cols=137  Identities=21%  Similarity=0.219  Sum_probs=104.8

Q ss_pred             EEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEEEE
Q 030045           10 VIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLI   89 (183)
Q Consensus        10 ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~vi   89 (183)
                      ..+|++||++||++++||.+  |++.|+.|++|++++|+ |++|+||.|+|. +|++..++||||+++|+++|+|+|+|+
T Consensus        40 ~~~I~Apa~~vW~lv~df~~--~~~w~p~I~s~e~~eGd-g~vGsVR~~t~~-~G~p~~~vkErL~~iD~~~~~~sY~ii  115 (190)
T 3kl1_A           40 TQRIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGD-GDVGSVREVTVI-SGLPASTSTERLEFVDDDHRVLSFRVV  115 (190)
T ss_dssp             EEEESSCHHHHHHHHHCTTC--GGGTCSSEEEEEEEESS-SSTTCEEEEEEC-SSSSCEEEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEecCCHHHHHHHHhCCCC--hhHcccccCEEEEEcCC-CCCCeEEEEEec-CCCccceEEEEEEEEeccCCEEEEEEE
Confidence            34899999999999999855  55555599999999999 789999999999 787778999999999999999999999


Q ss_pred             eccccccceEEEEEEEEEEee----eCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhC
Q 030045           90 EGNVLEMLYKSFCSVAKVTQK----DDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus        90 EG~~l~~~~~sy~~t~~v~p~----~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~~  157 (183)
                      +|++   ++++|++++++.|.    ++ ++||+|+|+++|++..+.  ..+. ...++.++++.--+-|.+.
T Consensus       116 eG~~---~~~~Y~s~~~v~~~~~~~~~-~~gt~V~Ws~~f~~p~g~--~~e~-~~~~~~~~~~~gL~~L~~~  180 (190)
T 3kl1_A          116 GGEH---RLKNYKSVTSVNEFLNQDSG-KVYTVVLESYTVDIPEGN--TEED-TKMFVDTVVKLNLQKLGVA  180 (190)
T ss_dssp             EESS---SCCSCEEEEEEEEEEC-CCC-CEEEEEEEEEEEECCTTC--CHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             ecCC---ccccEEEEEEEEecccccCC-CCcEEEEEEEEEEcCCCC--CHHH-HHHHHHHHHHHHHHHHHHH
Confidence            9997   34455555555442    13 668999999999864433  1222 4555566666555555443

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=99.96  E-value=9.5e-28  Score=194.73  Aligned_cols=143  Identities=17%  Similarity=0.213  Sum_probs=116.4

Q ss_pred             cceEEEEEE--EEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCC
Q 030045            3 LAGELEAVI--EVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDE   80 (183)
Q Consensus         3 ~~~~~~~ei--~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~   80 (183)
                      ..++++.++  +|+|||++||++++||. .+++|+| .|++|++ +|+ +++|+||.|+|. +|.+..++||||+++|++
T Consensus        48 ~~~k~~~~V~~~I~ApadkVW~lV~Df~-~l~kW~P-~V~s~ev-eGd-g~vGsVR~vt~~-~G~p~~~vkErL~~lDde  122 (205)
T 3oqu_A           48 RENQCTSALVKHIKAPLHLVWSLVRRFD-QPQKYKP-FVSRCTV-IGD-PEIGSLREVNVK-SGLPATTSTERLELLDDE  122 (205)
T ss_dssp             CTTEEEEEEEEEESSCHHHHHHHHTCTT-CGGGTCT-TEEEEEC-CSS-CCTTCEEEEEEC-TTSSCSEEEEEEEEEETT
T ss_pred             CCcEEEEEEeeEEcCCHHHHHHHHhCcC-ChhHcCc-cceEEEe-eCC-CCCCcEEEEEEc-CCCccceEEEEEEEEECC
Confidence            468999999  99999999999999984 5789999 8999985 898 899999999998 776778999999999999


Q ss_pred             ceEEEEEEEeccccccceEEEEEEEEEEeeeCCCC--CeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhC
Q 030045           81 NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEG--GSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus        81 ~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~g--gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~~  157 (183)
                      +|+|+|+|++|++   +|++|.++++|.|... +|  +|++.|++.+++..+..  .+. ...++..+++.=-+-|.+.
T Consensus       123 ~~~~sYsIieG~l---pv~~Y~ati~V~p~~~-dG~~~T~v~ws~~~D~p~g~t--~e~-~~~~v~~v~~~gL~~L~~~  194 (205)
T 3oqu_A          123 EHILGIKIIGGDH---RLKNYSSILTVHPEII-EGRAGTMVIESFVVDVPQGNT--KDE-TCYFVEALIRCNLKSLADV  194 (205)
T ss_dssp             TTEEEEEEEEESS---SCTTCEEEEEEEEECC-CC-CEEEEEEEEEEECCTTCC--HHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEecCc---ceeEEEEEEEEEEccC-CCCceEEEEEEEeccCCCCCC--HHH-HHHHHHHHHHHHHHHHHHH
Confidence            9999999999986   7999999999999822 33  68999999987755442  222 4555555555544444433

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=99.96  E-value=3.1e-28  Score=198.39  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=98.3

Q ss_pred             EEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEEE
Q 030045            9 AVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKL   88 (183)
Q Consensus         9 ~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~v   88 (183)
                      ...+|+|||++||++++|| +.+++|+| .|++|++++|+++++|+||.|+|. +|.+..++||||+++|+++|+|+|+|
T Consensus        54 v~~~I~ApadkVW~lv~dF-~~l~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~-~G~p~~~vkErL~~lDd~~~~~sYsI  130 (211)
T 3k3k_A           54 HAQRIHAPPELVWSIVRRF-DKPQTYKH-FIKSCSVEQNFEMRVGCTRDVIVI-SGLPANTSTERLDILDDERRVTGFSI  130 (211)
T ss_dssp             EEEEESSCHHHHHHHHTCT-TCGGGTCS-SEEEEECCTTCCCCTTCEEEEEES-SSSSCEEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCHHHHHHHHhCc-CChhHcCc-cceEEEEecCCCCCCCcEEEEEec-CCCccceEEEEEEEEeccCCEEEEEE
Confidence            3457999999999999998 55799999 899999999986799999999998 77777899999999999999999999


Q ss_pred             EeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045           89 IEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK  127 (183)
Q Consensus        89 iEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~  127 (183)
                      ++|++   ++++|.++|+|.|. + +|+  |+|+++|++
T Consensus       131 ieg~l---pv~~Y~sti~V~p~-~-~gg--V~Wt~~fes  162 (211)
T 3k3k_A          131 IGGEH---RLTNYKSVTTVHRF-E-KEN--RIWTVVLES  162 (211)
T ss_dssp             EEETT---GGGTCEEEEEEEEE-E-ETT--EEEEEEEEE
T ss_pred             eecCc---ceeEEEEEEEEEEC-C-CCC--EEEEEEEEE
Confidence            99986   79999999999997 2 444  999999995

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.95  E-value=4.8e-26  Score=174.95  Aligned_cols=107  Identities=18%  Similarity=0.283  Sum_probs=96.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      +++.+++|+|||++||++++|| +.+|+|+| .|++|++++|     |++|.++|. +|+   +++|||+++|+++++++
T Consensus         3 ~v~~si~I~Ap~~~VW~~l~d~-~~~~~w~p-~v~~~~~~~G-----G~vR~~~~~-~G~---~~~Erl~~~D~~~~~~~   71 (146)
T 3f08_A            3 HTTTSMEIFGSTEQVWQLIGGF-NSLPDWLP-YIPSSKLTEG-----GRVRHLANP-DGE---TIIERLEVFNDKERYYT   71 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHCST-TCHHHHCT-TCCEEEEEGG-----GTEEEEECT-TSC---EEEEEEEEEETTTTEEE
T ss_pred             EEEEEEEEeCCHHHHHHHHhcc-ccHHHhCC-CeEEEEEeCC-----CeEEEEEeC-CCC---EEEEEEEEEeCCCCEEE
Confidence            5899999999999999999998 45699999 7999999865     899999997 564   89999999999999999


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK  127 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~  127 (183)
                      |++++|++   ++++|.+++++.|..+ ++||+|+|+++|++
T Consensus        72 y~iv~g~~---~~~~~~~~~~v~p~~~-~~gt~v~w~~~~~p  109 (146)
T 3f08_A           72 YSIMNAPF---PVTNYLSTIQVKEGTE-SNTSLVEWSGTFTP  109 (146)
T ss_dssp             EEEEECSS---SEEEEEEEEEEEECSS-TTCEEEEEEEEEEE
T ss_pred             EEEecCCC---ceeEEEEEEEEEEecC-CCcEEEEEEEEEEe
Confidence            99999975   7999999999999313 77899999999998

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=99.94  E-value=1.6e-25  Score=179.40  Aligned_cols=136  Identities=19%  Similarity=0.191  Sum_probs=104.0

Q ss_pred             EEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEc-CCCCC----CccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            9 AVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIE-GEWGK----PGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         9 ~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~e-Gd~g~----~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      ...+|+|||++||++++|| +.++.|+| +|++|++++ |+ |+    +|+||.|+|. .|.+..++||||+++|+++|+
T Consensus        34 ~~~~I~Ap~d~VWalVrdF-~~p~~w~p-~V~s~~~~e~Gd-g~~~~~vGsVR~ltl~-~G~P~~~i~ErL~~lDde~~~  109 (189)
T 3oji_A           34 IAHRVDAPAHAIWRFVRDF-ANPNKYKH-FIKSCTIRVNGN-GIKEIKVGTIREVSVV-SGLPASTSVEILEVLDEEKRI  109 (189)
T ss_dssp             EEEEESSCHHHHHHHHSCT-TCGGGTCT-TEEEEEECCC-----CCCSTTCEEEEEEC-SSSSBSEEEEEEEEEETTTTE
T ss_pred             EEEEEcCCHHHHHHHHhCC-CChhhCcc-ccceEEEEecCC-CCccCCCCcEEEEEec-CCCcCceEEEEEEEEeccCCE
Confidence            4567999999999999999 55788999 899999998 98 44    9999999998 776677999999999999999


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeC--CC----CCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHH
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDD--HE----GGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYI  154 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~--~~----ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yL  154 (183)
                      |+|+|++|++   ++++|+++++|.|.+.  ++    ++|++.|++.+++..+.  ..+. ...++..++|.=-+-|
T Consensus       110 ~sY~Iieg~~---pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~g~--t~e~-~~~~v~~v~~~gL~~L  180 (189)
T 3oji_A          110 LSFRVLGGEH---RLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGN--TEED-TRMFVDTVVKSNLQNL  180 (189)
T ss_dssp             EEEEEEECSB---SSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCTTS--CHHH-HHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCC---ccccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCCCC--CHHH-HHHHHHHHHHHHHHHH
Confidence            9999999997   7889999999998521  02    25888888887654333  1222 5556666665533333

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.94  E-value=4.8e-25  Score=172.23  Aligned_cols=114  Identities=14%  Similarity=0.138  Sum_probs=97.5

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCC-CCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEW-GKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~-g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      .+++.+++|+|||++||++++||. .+ +|+|..+++|++++|++ +++|+||.+     |+   ++||||+++|+++++
T Consensus         2 ~~v~~si~I~Ap~~~VW~~v~Df~-~~-~w~P~v~~s~e~~eg~~~~~vGsvR~~-----gg---~v~Erl~~~D~~~~~   71 (160)
T 3p51_A            2 PKVYNSIVVDAPVERVWSRIRNFH-DF-SWAPSLIKSCKKVGGGGGYSVGARRLL-----NG---EFLDTLIAYSEIERR   71 (160)
T ss_dssp             CEEEEEEEESSCHHHHHHHHCCTT-CC-TTCTTTCCCEEEESSCCTTCTTCEEEE-----TT---TEEEEEEEEETTTTE
T ss_pred             CEEEEEEEECCCHHHHHHHHhCcC-CC-eEccCceEEEEEEecCCCCCCCCEEEE-----CC---EEEEEEEEEcCCCcE
Confidence            358999999999999999999985 45 99997777779999974 489999997     23   799999999999999


Q ss_pred             EEEEEEeccccc--cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecC
Q 030045           84 TIFKLIEGNVLE--MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQN  129 (183)
Q Consensus        84 ~~y~viEG~~l~--~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~  129 (183)
                      ++|++++|++..  ..+++|.++++|.|.++ ++||+|+|+++|++.+
T Consensus        72 ~sY~ii~g~l~~~~~~~~~y~~~~~v~p~~~-~ggt~V~w~~~~~~~~  118 (160)
T 3p51_A           72 IMYSMDEGPSPVSSGEIYNYVGNLHLLPVTI-DDTTFVEWSGSWESAS  118 (160)
T ss_dssp             EEEEEEECSTTSSTTTEEEEEEEEEEEEETT-TTEEEEEEEEEEEESC
T ss_pred             EEEEEecCCCcccccceeEEEEEEEEEEecC-CCCEEEEEEEEEEeCH
Confidence            999999997521  01999999999999722 5689999999999964

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.91  E-value=3.6e-23  Score=157.63  Aligned_cols=111  Identities=17%  Similarity=0.165  Sum_probs=100.3

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      +++.+++|+|||++||+++.|+ ..+|+|+| .+++|++++|+++++|++|.+++. .|+   +++|||+.+|+.+++++
T Consensus         3 ~v~~si~I~ap~e~Vw~~l~d~-~~~~~w~p-~v~~~~~~~g~~~~~G~~r~~~~~-~G~---~~~e~i~~~d~~~~~~~   76 (151)
T 2le1_A            3 TLRRSVEVAAPAADVWTLVGDF-SAIHRWHP-QVSAPTLRGASPHTPGAERVFGAG-TEE---ELVERLVERDESARRLV   76 (151)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTS-GGGGGTCT-TCCCEEEESSCTTSTTCEEEESSS-SSS---CEEEEEEEEETTTTEEE
T ss_pred             eEEEEEEecCCHHHHHHHHhCc-CcHHHhcC-CceEEEEECCCCCCCCeEEEEEeC-CCC---EEEEEEEEEeCCCCEEE
Confidence            7899999999999999999998 66799999 589999998876789999999987 554   89999999999999999


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK  127 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~  127 (183)
                      |++++|++   ++++|.+++++.|. + ++||.|+|+.+|++
T Consensus        77 ~~~~~g~~---~~~~~~~~~~l~~~-~-~~gt~v~w~~~f~~  113 (151)
T 2le1_A           77 YTMPDPPF---PITNHRAVLEVVPR-D-DRHCTVVWTAMFDC  113 (151)
T ss_dssp             EEEEECSS---SEEEEEEEEEEEES-S-SSCEEEEEEEEEEE
T ss_pred             EEEecCCC---CceeEEEEEEEEEC-C-CCcEEEEEEEEEEe
Confidence            99999875   69999999999995 3 67899999999987

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.60  E-value=1.4e-13  Score=106.82  Aligned_cols=119  Identities=14%  Similarity=0.121  Sum_probs=90.3

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEE--EeecCCCcceEEEEEEeecCCc
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWT--FTRYAGNPQIVKELIEVVDDEN   81 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~--~~~~gg~~~~~kErl~~iD~~~   81 (183)
                      .++++.++.|++||++||+++.|+ ..+|+|+| .+.++++++++ +..-.+| ++  .. .+|....+..+. .+|+..
T Consensus         2 ~~~v~~si~I~a~~~~V~~lV~Dv-e~yP~~~p-~~~~~~vl~~~-~~~~~~r-l~~~~~-~~G~~~~~ts~~-~~d~~~   75 (159)
T 3tl1_A            2 AGHTDNEITIAAPMELVWNMTNDI-EKWPGLFS-EYASVEVLGRD-DDKVTFR-LTMHPD-ADGKVWSWVSER-VADPVT   75 (159)
T ss_dssp             CSEEEEEEEESSCHHHHHHHHTCG-GGHHHHCS-SEEEEEEEEEC-SSEEEEE-EEECCC-TTSCCCEEEEEE-EEETTT
T ss_pred             CCeeEEEEEecCCHHHHHHHHHhH-HHhhhhhh-CceEEEEEecC-CCEEEEE-EEEEec-cCceEEEEEEEE-EEcCCC
Confidence            457899999999999999999988 67999999 69999998876 3333344 33  33 344333333332 479999


Q ss_pred             eEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCch
Q 030045           82 YITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE  136 (183)
Q Consensus        82 ~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~  136 (183)
                      ++|.|++++.+    +++++..++++.|.   ++||.|+|..+|+..++. |.+.
T Consensus        76 ~~I~~~~~~~g----Pf~~l~g~W~f~p~---~~gt~V~~~~df~~~~~~-p~~~  122 (159)
T 3tl1_A           76 RTVRAQRVETG----PFQYMNIVWEYAET---AEGTVMRWTQDFAMKPDA-PVDD  122 (159)
T ss_dssp             TEEEEEESSCT----TEEEEEEEEEEEEE---TTEEEEEEEEEEEECTTC-SSCH
T ss_pred             CEEEEEEccCC----ChhhccCEEEEEEC---CCCEEEEEEEEEEecCCC-CCCH
Confidence            99999988533    47899999999997   448999999999987663 4443

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.58  E-value=2.2e-13  Score=106.87  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=88.3

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEE-EEE--EeecCCCc-ceEEEEEEeecC
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVI-CWT--FTRYAGNP-QIVKELIEVVDD   79 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR-~~~--~~~~gg~~-~~~kErl~~iD~   79 (183)
                      ...++.++.|++||++||+++.|+ ..+|+|+| .+.++++++++ +  +.+| .+.  .. .+|.. ++..++  .+|+
T Consensus         2 a~~v~~si~I~a~~~~v~~lv~Dv-~~~p~w~p-~~~~~~~~~~~-~--~~~~~~l~~~~~-~~G~~~~~ts~~--~~d~   73 (169)
T 3tvq_A            2 AARTDNSIVVNAPFELVWDVTNDI-EAWPELFS-EYAEAEILRQD-G--DGFDFRLKTRPD-ANGRVWEWVSHR--VPDK   73 (169)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHTCG-GGHHHHCT-TEEEEEEEEEE-T--TEEEEEEEECCC-TTSCCCEEEEEE--EEEG
T ss_pred             CCeEEEEEEecCCHHHHHHHHHhh-hHHHHHHh-heeEEEEEecC-C--CEEEEEEEEEec-CCCeEEEEEEEE--EEcC
Confidence            567899999999999999999997 67899999 69999998876 2  2233 222  22 23433 344444  3789


Q ss_pred             CceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCch
Q 030045           80 ENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE  136 (183)
Q Consensus        80 ~~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~  136 (183)
                      ..+++.|+.++++    ++++|.++++|.|.   ++||.|+|+.+|+..++. |.+.
T Consensus        74 ~~~~I~~~~l~~g----Pf~~~~g~W~f~p~---~~gt~V~~~~df~~~~~~-p~~~  122 (169)
T 3tvq_A           74 GSRTVRAHRVETG----PFAYMNLHWTYRAV---AGGTEMRWVQEFDMKPGA-PFDN  122 (169)
T ss_dssp             GGTEEEEEESSCT----TEEEEEEEEEEEEE---TTEEEEEEEEEEEECTTC-SSCH
T ss_pred             CCcEEEEEEcCCC----ChhheeeEEEEEEC---CCCEEEEEEEEEEecCCC-cccH
Confidence            9999999987544    47899999999997   344999999999987653 4444

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.53  E-value=1.1e-12  Score=95.92  Aligned_cols=111  Identities=22%  Similarity=0.172  Sum_probs=85.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      +++.+++|++|+++||+++.|+ ..+|+|+| .+.++++++++  ..|....+++. .+|....+..++.. ++.++++.
T Consensus         3 ~~~~~~~i~ap~~~V~~~l~d~-~~~~~w~p-~~~~~~~~~~~--~~g~~~~~~~~-~~g~~~~~~~~~~~-~~~~~~i~   76 (147)
T 2d4r_A            3 EVRAERYIPAPPERVYRLAKDL-EGLKPYLK-EVESLEVVARE--GARTRSRWVAV-AMGKKVRWLEEEEW-DDENLRNR   76 (147)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCH-HHHGGGCT-TEEEEEEEEEE--TTEEEEEEEEE-ETTEEEEEEEEEEE-ETTTTEEE
T ss_pred             eEEEEEEeCCCHHHHHHHHhCh-hhhhhhcc-cccEEEEEEeC--CCccEEEEEEE-eCCceEEEEEEEEE-cCCCcEEE
Confidence            6889999999999999999987 67899999 68889988664  23666677765 34422335556543 56788999


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE  130 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~  130 (183)
                      |++++|++     ..+..++++.|.   ++||.++|+.+|+..+.
T Consensus        77 ~~~~~g~~-----~~~~~~~~~~~~---~~gT~v~~~~~~~~~~~  113 (147)
T 2d4r_A           77 FFSPEGDF-----DRYEGTWVFLPE---GEGTRVVLTLTYELTIP  113 (147)
T ss_dssp             EEEEEESC-----SEEEEEEEEEEC---SSSEEEEEEEEEECCCT
T ss_pred             EEeccCCh-----hheEEEEEEEEC---CCCcEEEEEEEEecCCc
Confidence            99988763     467889999997   44599999999998654

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.51  E-value=6.5e-13  Score=103.33  Aligned_cols=117  Identities=17%  Similarity=0.176  Sum_probs=90.5

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      +.+++.++.|++||++||+++.|+ ..+|+|+| .+.++++++++.+  +..-.+... .+|.......++ .+|+..++
T Consensus         4 M~~v~~si~I~ap~~~V~~~v~D~-~~~p~~~P-~~~~~~v~~~~~~--~~~~~~~~~-~~G~~~~~~s~~-~~~~~~~~   77 (172)
T 3tfz_A            4 MRHVEHTVTVAAPADLVWEVLADV-LGYADIFP-PTEKVEILEEGQG--YQVVRLHVD-VAGEINTWTSRR-DLDPARRV   77 (172)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHHCG-GGHHHHCS-SEEEEEEEEEETT--EEEEEEEEE-ETTEEEEEEEEE-EEETTTTE
T ss_pred             CcEEEEEEEeCCCHHHHHHHHHhH-HHHHhhCc-ccceEEEEecCCC--EEEEEEEEe-cCCEEEEEEEEE-EEeCCCCE
Confidence            468999999999999999999997 67999999 6999999876522  222234444 344333344443 37888999


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCC
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNEN  131 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~  131 (183)
                      +.|++++++.   +++++..++++.|. + ++||.|+|+.+|+..+..
T Consensus        78 i~~~~~~~~g---pf~~~~g~w~f~~~-~-~~~t~V~~~~~~~~~~~~  120 (172)
T 3tfz_A           78 IAYRQLETAP---IVGHMSGEWRAFTL-D-AERTQLVLTHDFVTRAAG  120 (172)
T ss_dssp             EEEEEEECCT---TEEEEEEEEEEEEE-E-TTEEEEEEEEEEEECCCC
T ss_pred             EEEEEeeCCC---ChhhcEEEEEEEEC-C-CCcEEEEEEEEEEEcChh
Confidence            9999998654   68899999999997 3 578999999999986553

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.46  E-value=6.3e-12  Score=97.05  Aligned_cols=106  Identities=9%  Similarity=0.009  Sum_probs=85.0

Q ss_pred             cceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            3 LAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         3 ~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      .+.+++.+++|+|||++||+++.|+ ...|.|.| .+.++++ +|. -.+|+.+.++..  +++  .+..+|+++|+..+
T Consensus        16 ~~~~i~~si~I~Appe~VW~~ltD~-~~~~~W~p-~v~~~~~-~G~-~~~G~~~~~~~~--~~~--~~~~~v~~~~p~~~   87 (155)
T 3ijt_A           16 GSMKFSFELAVNTKKEDAWTYYSQV-NQWFVWEG-DLEQISL-EGE-FTTGQKGKMKME--DMP--ELAFTLVEVRENQC   87 (155)
T ss_dssp             CCEEEEEEEEESSCHHHHHHHHHCG-GGGGGTST-TEEEEEE-SSS-SSTTCEEEEEET--TSC--CEEEEECCCBTTTE
T ss_pred             CcEEEEEEEEEcCCHHHHHHHHhCc-ccccccch-hhEeeec-cCC-CCCCCEEEEEeC--CCC--cEEEEEEEEeCCcE
Confidence            3579999999999999999999997 67899999 6888885 676 589999888865  432  68889999988776


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEE
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKY  125 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~y  125 (183)
                       ++|...   +   +...|..+.++.|. + +++|+|+|+.+|
T Consensus        88 -~~~~~~---~---p~~~~~~~h~l~p~-~-~ggTrvt~~~~~  121 (155)
T 3ijt_A           88 -FSDLTA---T---PFGNVLFEHEILEN-P-DGTISLRHSVSL  121 (155)
T ss_dssp             -EEEEEE---E---TTEEEEEEEEEEEC-T-TSCEEEEEEEEE
T ss_pred             -EEEEEe---c---CCeEEEEEEEEEEc-C-CCcEEEEEEEEE
Confidence             777543   2   33466677788886 3 678999999998

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=99.33  E-value=1e-10  Score=88.92  Aligned_cols=147  Identities=17%  Similarity=0.122  Sum_probs=90.9

Q ss_pred             CCcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceE--EEEEEeec
Q 030045            1 MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIV--KELIEVVD   78 (183)
Q Consensus         1 m~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~--kErl~~iD   78 (183)
                      |++  +++.++.|++|+++||+++.|+ ..+|+|+| .+.++++..|+  .  ....+++. .++....+  +-++..+|
T Consensus         1 M~m--~i~~~~~i~ap~e~Vw~~l~D~-e~~~~w~p-~~~~~~~~~~~--~--~~~~~~~~-~g~~~~~~~~~~~~~~~~   71 (162)
T 2pcs_A            1 MSL--NGNGSIELKGTVEEVWSKLMDP-SILSKCIM-GCKSLELIGED--K--YKADLQIG-IAAVKGKYDAIIEVTDIK   71 (162)
T ss_dssp             --C--EEEEEEEEESCHHHHHHHHTCH-HHHHHHST-TEEEEEEEETT--E--EEEEEEEC-CGGGCEEEEEEEEEEEEE
T ss_pred             CeE--EEeeEEEecCCHHHHHHHhcCH-HHHHhhCC-CceEeEEeCCC--e--EEEEEEEE-eeeEEEEEEEEEEEEecC
Confidence            554  4889999999999999999987 67899999 57888887553  1  12233333 22211233  33666667


Q ss_pred             CCceEEEEEEE-eccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH---H-HHHHHHHHHHHHHHH
Q 030045           79 DENYITIFKLI-EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES---K-VLEMMIDIVKNIDAY  153 (183)
Q Consensus        79 ~~~~~~~y~vi-EG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~---~-~~~~~~~~~k~ie~y  153 (183)
                      +.. ++.++.. .|.  + +...+..++++.|. + ++||.++|+++++..+........   . ....+..+++.+.++
T Consensus        72 ~~~-~~~~~~~~~~~--~-~~~~~~~~~~l~~~-~-~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~  145 (162)
T 2pcs_A           72 PPY-HYKLLVNGEGG--P-GFVNAEGVIDLTPI-N-DECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKE  145 (162)
T ss_dssp             TTT-EEEEEEEEEET--T-EEEEEEEEEEEEES-S-SSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCc-EEEEEEEecCC--C-ccEEEEEEEEEEec-C-CCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            653 5565554 222  1 44567889999994 2 678999999999986543111111   2 344556777777777


Q ss_pred             HhhChhhhh
Q 030045          154 IIQHEEARV  162 (183)
Q Consensus       154 Ll~~~~~~~  162 (183)
                      |-+....+-
T Consensus       146 ~e~~~~~~~  154 (162)
T 2pcs_A          146 IAKSKQEAS  154 (162)
T ss_dssp             HHHC-----
T ss_pred             hcccCcccc
Confidence            766544443

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.29  E-value=3.1e-11  Score=90.94  Aligned_cols=112  Identities=10%  Similarity=0.087  Sum_probs=85.2

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCC-C-CCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEW-G-KPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~-g-~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      +++.++.|++||++||+++.|. ..+|+|+| .++++++++.+. + +.+....+.+. .++-...+..|+. +|+.+++
T Consensus         3 ~~~~s~~i~ap~~~v~~~v~D~-~~~p~~~p-~~~~~~v~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~v~-~~~~~~~   78 (148)
T 1t17_A            3 RHVVTKVLPYTPDQLFELVGDV-DAYPKFVP-WITGMRTWNGRVDGAVSTVDAEAQVG-FSFLREKFATRVR-RDKDARS   78 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHHTTT-TCCSSCCS-SCCCCCEEEEEEETTEEEEEEEEECS-TTSSCCEEEEEEE-EETTTCE
T ss_pred             EEEEEEEecCCHHHHHHHHHHH-hhHHhhCC-CcCeeEEEEecCCCCCceEEEEEEEE-ecceeEEEEEEEE-EcCCCcE
Confidence            6889999999999999999987 67899999 588888876431 1 13445555554 3443345666766 5777778


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecC
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQN  129 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~  129 (183)
                      +.++.++|+     ++.+.+++++.|.   ++||.|++.++|+..+
T Consensus        79 i~~~~~~G~-----f~~~~g~w~f~~~---~~gt~v~~~~~~~~~~  116 (148)
T 1t17_A           79 IDVSLLYGP-----FKRLNNGWRFMPE---GDATRVEFVIEFAFKS  116 (148)
T ss_dssp             EEEEESSTT-----SSCEEEEEEEEEE---TTEEEEEEEEEECCSC
T ss_pred             EEEEECCCC-----hhccEEEEEEEEC---CCCeEEEEEEEEEECc
Confidence            999999875     4577889999997   4459999999999854

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=99.21  E-value=1.6e-09  Score=81.26  Aligned_cols=112  Identities=17%  Similarity=0.148  Sum_probs=74.7

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEE--EEEeecCCc
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKE--LIEVVDDEN   81 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kE--rl~~iD~~~   81 (183)
                      .-+++.++.|++|+++||+++.|. ..+|+|+| .+.+++ ..|+    +....++.. .++-...++.  ++..+++. 
T Consensus        12 ~m~i~~~~~i~ap~e~Vw~~l~D~-~~~~~w~p-~~~~~~-~~~~----~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~-   82 (157)
T 2ns9_A           12 KVRYEGSFEVSKTPEEVFEFLTDP-KRFSRAFP-GFKSVE-VEDG----SFTIELRLS-LGPLRGDARVRASFEDLEKP-   82 (157)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTCH-HHHGGGST-TEEEEE-EETT----EEEEEEEEE-SSSSEEEEEEEEEEEEEETT-
T ss_pred             EEEEeeEEEEcCCHHHHHHHHcCH-HHHHhhCC-CceEEE-ECCC----EEEEEEEEE-EcceeEEEEEEEEEEecCCC-
Confidence            347999999999999999999987 67899999 478888 5443    122223333 2321122333  55566664 


Q ss_pred             eEEEEEEE-eccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045           82 YITIFKLI-EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE  130 (183)
Q Consensus        82 ~~~~y~vi-EG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~  130 (183)
                      +++.|+.. .|. .+ +. .+..++++.|.   ++||.++|+.+|+..+.
T Consensus        83 ~~i~~~~~~~~~-~~-~~-~~~~~~~l~~~---~~gT~v~~~~~~~~~g~  126 (157)
T 2ns9_A           83 SKATVKGSGRGA-GS-TL-DFTLRFAVEPS---GGGSRVSWVFEGNVGGL  126 (157)
T ss_dssp             TEEEEEEEEECS-SE-EE-EEEEEEEEEEE---TTEEEEEEEEEEEEEEG
T ss_pred             cEEEEEEEecCC-Cc-cE-EEEEEEEEEeC---CCcEEEEEEEEEEECcC
Confidence            46677643 221 11 23 37789999997   57899999999987653

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=99.14  E-value=2.9e-09  Score=81.14  Aligned_cols=111  Identities=10%  Similarity=0.125  Sum_probs=78.7

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCC-CcceEEEEEEeecCCceE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAG-NPQIVKELIEVVDDENYI   83 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg-~~~~~kErl~~iD~~~~~   83 (183)
                      -+++.++.|++|+++||+++.|+ ..+|+|+| .+.++++++++      .-.|......| ....+.-++..+ +.+++
T Consensus         4 ~~v~~s~~I~ap~e~V~~~~~D~-e~~p~w~p-~~~~v~~~~~~------~~~~~~~~~~G~~~~~~~~~v~e~-~p~~~   74 (155)
T 3ggn_A            4 TVVRDAVTIGKPAEQLYAVWRDL-PGLPLLMT-HLRSVEVLDDK------RSRWTVEAPAPLGTVSWEAELTAD-EPGKR   74 (155)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCG-GGHHHHST-TCCEEEECSSS------EEEEEEECCTTTCEEEEEEEEEEE-ETTTE
T ss_pred             cEEEEEEEEcCCHHHHHHHHhCH-HHhHHHhh-hceEEEEecCC------eeEEEEEecCCcceEEEEEEEEEe-cCCCE
Confidence            47889999999999999999987 67899999 68999987543      22334431224 334566677665 45667


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE  130 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~  130 (183)
                      +.|+.++|+..     .+..++++.|.++ ++||.|+++++|++.++
T Consensus        75 i~~~~~~g~~~-----~~~g~~~F~~~~~-~~gT~V~~~~~~~~~~~  115 (155)
T 3ggn_A           75 IAWRSLPGARI-----ENSGEVLFRPAPG-ARGTEVVVRLTYRPPGG  115 (155)
T ss_dssp             EEEEECTTCSS-----CEEEEEEEEECSS-SSCEEEEEEEEEC----
T ss_pred             EEEEECCCCCc-----ceEEEEEEEECCC-CCceEEEEEEEEECCCc
Confidence            89999988632     4566778877522 56899999999998653

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=99.01  E-value=2.1e-08  Score=76.97  Aligned_cols=111  Identities=19%  Similarity=0.211  Sum_probs=76.3

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEE---eecCCC--cceEEEEEEeec
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTF---TRYAGN--PQIVKELIEVVD   78 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~---~~~gg~--~~~~kErl~~iD   78 (183)
                      .-+++.++.|++||++||+++.|. ..+|.+.|+++.-.+.  ++ |   .. .+..   . .|+.  .....-|+. .|
T Consensus         6 ~i~v~~s~~I~ap~e~v~~lv~Dv-e~w~~~yp~~~p~~~~--~~-~---~~-~~~~a~l~-vg~~~~~~~~~s~~~-~~   75 (161)
T 3p9v_A            6 SIELNRDLEIPASYDEVFDLLADV-PKSASHFPKVDKLVDL--GN-N---AY-RWEMEKVG-VDKHAIQSVYACTYH-AD   75 (161)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTCH-HHHHTTSTTEEEEEEE--ET-T---EE-EEEECCBS-SGGGCBCCEEEEEEE-EE
T ss_pred             EEEEEEEEEEcCCHHHHHHHHhCh-hhhHhhCCCeEEEEEc--CC-C---ce-EEEEEEEe-eeeEEEEEEEEEEEE-Ec
Confidence            356788899999999999999987 4566667743333221  23 2   22 2333   2 2322  124455543 67


Q ss_pred             CCceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045           79 DENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE  130 (183)
Q Consensus        79 ~~~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~  130 (183)
                      ++++++.+++++|++    .++...++++.|. + +|+|.|+|.++|+....
T Consensus        76 ~~~~~I~~~~~~g~~----~~~l~g~w~f~p~-~-~g~t~V~~~~~~e~~~p  121 (161)
T 3p9v_A           76 KEAGKITWSPIKGEG----NGVVSGSWTLSAK-G-DNATAVKFQTSAELTVP  121 (161)
T ss_dssp             TTTTEEEEEECTTST----TEEEEEEEEEEES-S-SSCEEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEEecCcc----ceeEEEEEEEEEC-C-CCeEEEEEEEEEEEcCc
Confidence            778899999998874    3578889999997 3 55699999999999744

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=98.91  E-value=4.9e-08  Score=71.81  Aligned_cols=139  Identities=14%  Similarity=0.157  Sum_probs=89.3

Q ss_pred             CCcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCC
Q 030045            1 MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDE   80 (183)
Q Consensus         1 m~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~   80 (183)
                      |....+++.++.|+||+++||+++.|. ..+++|.++..     .+++ -.+|....+.+. .++..-.+..++.++++ 
T Consensus         1 M~~~~~i~~~~~i~ap~e~Vw~~ltd~-~~~~~W~~~~~-----~~~~-~~~G~~~~~~~~-~~g~~~~~~~~v~~~~p-   71 (146)
T 2leq_A            1 MEIKLIAQVKTVINAPIEKVWEALVNP-EIIKEYMFGTT-----VVSD-WKEGSQIVWKGE-WKGKAYEDKGTILQFNE-   71 (146)
T ss_dssp             CCCCEEEEEEEEECSCHHHHHHHHSCT-THHHHHSSSCE-----EECC-CSTTCEEEEEEE-ETTEEEEEEEEEEEEET-
T ss_pred             CCCCceEEEEEEECCCHHHHHHHHcCH-HHhceeEcCCc-----ceec-cCCCCEEEEEec-CCCceecccEEEEEEcC-
Confidence            777889999999999999999999986 67899963222     1344 356666566665 44433357888888887 


Q ss_pred             ceEEEEEEEec-cccc-cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH-HHHHHHHHHHHHHHHHhh
Q 030045           81 NYITIFKLIEG-NVLE-MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK-VLEMMIDIVKNIDAYIIQ  156 (183)
Q Consensus        81 ~~~~~y~viEG-~~l~-~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~-~~~~~~~~~k~ie~yLl~  156 (183)
                      ++++.|+.... +.+. .+-.....++++.|.   ++||.++|+.+..+..     ...+ .......++..+.+||-.
T Consensus        72 ~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~~~---~~gT~l~~~~~~~~~~-----~~~~~~~~gw~~~l~~Lk~~le~  142 (146)
T 2leq_A           72 RSILQYSHFSPLTGKPDLPENYHVVTITLTAL---KKGVEVELTQDNNETE-----KEQKHSEDNWNTMLEGLKKFLEN  142 (146)
T ss_dssp             TTEEEEECBCGGGCCCSCGGGSCEEEEEEEEC---SSCEEEEEEEEEESSH-----HHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             CCEEEEEEccCccCCCCCCCCceEEEEEEEEc---CCCeEEEEEEecCCch-----hhHhhHHhhHHHHHHHHHHHHhc
Confidence            45667776422 1000 011245678888896   5679999887643211     1112 344456677777777643

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=98.86  E-value=1.9e-07  Score=68.88  Aligned_cols=138  Identities=10%  Similarity=0.057  Sum_probs=89.1

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEee-cCCCcceEEEEEEeecCCceE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTR-YAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~-~gg~~~~~kErl~~iD~~~~~   83 (183)
                      .+++.++.|+||+++||+++.|. ..+++|.|..--.+...+++ -.+|..-.+.+.. .+|....+.-++.++++ +++
T Consensus         3 ~~~~~~~~i~ap~e~Vw~altd~-~~~~~W~~~~~~~~~~~~~~-~~~Gg~~~~~~~~~~~g~~~~~~~~v~~~~p-~~~   79 (147)
T 1z94_A            3 NTIRLHRVLSAPPERVYRAFLDP-LALAKWLPPEGFVCKVLEHD-ARVGGAYKMEFLAFASGQKHAFGGRYLELVP-GER   79 (147)
T ss_dssp             CCEEEEEEESSCHHHHHHHTTCH-HHHHHHSSCTTEEEEEEEEC-CSTTCEEEEEEEETTTCCEEEEEEEEEEEET-TTE
T ss_pred             cEEEEEEEeCCCHHHHHHHhCCH-HHHhhccCCCCEeeeEEEEc-cCCCcEEEEEEEECCCCCEEEEEEEEEEEcC-CCE
Confidence            46888999999999999999975 67899997431122333455 4567666665531 23433457888888876 456


Q ss_pred             EEEEEEeccc-cccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 030045           84 TIFKLIEGNV-LEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYII  155 (183)
Q Consensus        84 ~~y~viEG~~-l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl  155 (183)
                      +.|+...++. ..   .....++++.|.   ++||.++++.++.+.  . ..... .......++..+.++|-
T Consensus        80 l~~~~~~~~~~~~---~~~~~~~~l~~~---~~gT~l~~~~~~~~~--~-~~~~~-~~~gw~~~L~~L~~~le  142 (147)
T 1z94_A           80 IRYTDRFDDAGLP---GDMITTITLAPL---SCGADLSIVQEGIPD--A-IPPEN-CYLGWQQSLKQLAALVE  142 (147)
T ss_dssp             EEEEEEESCCC------CEEEEEEEEEE---TTEEEEEEEEECCCT--T-SCHHH-HHHHHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCCC---CcEEEEEEEEec---CCCEEEEEEEEcCCc--h-hhHHH-HHHHHHHHHHHHHHHHH
Confidence            7787654432 11   135678889997   568999999886432  1 11122 44455667777777774

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=98.78  E-value=6.2e-07  Score=66.71  Aligned_cols=133  Identities=13%  Similarity=0.084  Sum_probs=88.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccc-cCCceeeEEEEcCCCCCCccEEEEEEeecCCC-cceEEEEEEeecCCceE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSI-SPQSVQSCELIEGEWGKPGAVICWTFTRYAGN-PQIVKELIEVVDDENYI   83 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~-~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~-~~~~kErl~~iD~~~~~   83 (183)
                      +++.++.|+||+++||+++.|. ..+++| .+..--.+...+++ -.+|..-.+.+...+|. ...+.-++.++++. ++
T Consensus         2 ~i~~~~~i~ap~e~Vw~altd~-~~~~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~~~~~~~~~v~~~~p~-~~   78 (142)
T 2lcg_A            2 NITVETTVAAPVGKVWRAYTTP-EDIKQWNAASDDWHTTAATVD-LREGGAFSSRMEAKDGSMGFDFAGTYTKVVEN-KR   78 (142)
T ss_dssp             EEEEEEEESSCHHHHHHHTTCH-HHHHHHCCSSTTEEEEEEEEC-CSTTCEEEEEEEETTSSCEEEEEEEEEEEETT-TE
T ss_pred             eEEEEEEeCCCHHHHHHHhCCH-HHHhcCCCCCCCccceeeEEc-cccCCEEEEEEEcCCCCceeeeEEEEEEEcCC-CE
Confidence            5788999999999999999975 678999 65321222334456 46777666665512342 24577888888764 46


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhChh
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHEE  159 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~~~~  159 (183)
                      +.|+. .      +   ...++++.|.   ++||.++++..+.  ..  ...+. .......++..+.++|-...+
T Consensus        79 l~~~~-~------g---~~~~~~l~~~---~~gT~l~~~~~~~--~~--~~~~~-~~~Gw~~~L~~L~~~le~~~~  136 (142)
T 2lcg_A           79 IEYAF-G------D---RTAKVEFLEA---PQGVTVRVSFVAE--TE--YPVEQ-QQQGWQAILNNFKRHVESHLE  136 (142)
T ss_dssp             EEEEE-T------T---EEEEEEEEEE---TTEEEEEEEEECC--SS--SCHHH-HHHHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEc-C------C---CEEEEEEEEc---CCCEEEEEEEecC--CH--HHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence            67775 1      2   5668888897   5689999886651  11  11222 445557778888888876554

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=98.70  E-value=1.8e-06  Score=65.79  Aligned_cols=140  Identities=11%  Similarity=0.059  Sum_probs=88.3

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCc--eeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCc
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQS--VQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDEN   81 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~--v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~   81 (183)
                      ..++..++.|+||+++||+++.|. ..+++|.+..  +. +...+++ -.+|..-.+.+..++|..-.+.-++.++++..
T Consensus         7 ~~~i~~~r~i~Ap~e~Vw~altdp-~~~~~W~~~~~~~~-~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~   83 (161)
T 3rd6_A            7 HSTFTIERTYPQSPDRVFHAFADK-ATVRRWRVDGDGFT-VAEFSFD-FRVGGGEVSRFSYGGGPEVRLDAQFQDIVPDQ   83 (161)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCH-HHHHHHTCCCCC----CEEEEC-CSTTCEEEEEECSTTSCCEEEEEEEEEEETTT
T ss_pred             CceEEEEEEECCCHHHHHHHhcCH-HHHhhccCCCCCce-eeEEEEc-cCcCCEEEEEEECCCCCEEEEEEEEEEEcCCC
Confidence            478999999999999999999975 6789999532  22 2223455 35565555555413443345778888888755


Q ss_pred             eEEEEEEE--eccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 030045           82 YITIFKLI--EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYII  155 (183)
Q Consensus        82 ~~~~y~vi--EG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl  155 (183)
                      + +.|+..  ..+.   +......++++.|.   ++||.++++..+-...+. ..... ..+....++..+++||.
T Consensus        84 r-l~~~~~~~~~~~---~~~~s~v~~~l~~~---~~gT~lt~~~~~~~~~~~-~~~~~-~~~GW~~~L~~L~~~le  150 (161)
T 3rd6_A           84 R-IVFSYRMAIGPQ---PMSASLTTVELTPS---GDGTRLTYTEQGAFFDGV-DSAKG-REEGTRGLLEALAAELQ  150 (161)
T ss_dssp             E-EEEEEEEEETTE---EEEEEEEEEEEEEE---TTEEEEEEEEEEEEETTC-CCHHH-HHHHHHHHHHHHHHHC-
T ss_pred             E-EEEEEEecCCCC---CCCceEEEEEEEEC---CCCEEEEEEEEecCcchh-hhHHH-HHHHHHHHHHHHHHHHh
Confidence            4 555543  1121   23345678889997   567999999886543321 12222 45555777777877764

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=98.69  E-value=6.6e-07  Score=68.37  Aligned_cols=117  Identities=15%  Similarity=0.108  Sum_probs=76.3

Q ss_pred             cceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            3 LAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         3 ~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      ...+++.++.|+||+++||+++.|. ..+++|.+..--.+...+++ -.+|..-.+.+...+|......-++.++++ ++
T Consensus        12 ~~~~i~~~~~i~ap~e~Vw~altdp-~~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p-~~   88 (171)
T 2il5_A           12 EHVEVEIEKLYKFSPELVYEAWTKK-DLLKQWFMTSARTNKEIEAD-VKEGGKYRIVDQQRNGKVNVIEGIYESLVM-DE   88 (171)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHTTCH-HHHTTTSSSCTTTEEEEEEC-CSTTCEEEEEEECGGGCEEEEEEEEEEEET-TT
T ss_pred             CCceEEEEEEeCCCHHHHHHHHCCH-HHHHhccCCCCccceEEEec-ccCCCEEEEEEECCCCCEEEEEEEEEEEcC-CC
Confidence            3467899999999999999999975 67889985321123334456 356666555544123433346778888875 45


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK  127 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~  127 (183)
                      ++.|+...++.   +-.....++++.|. + +|+|.++++.+...
T Consensus        89 rl~~~~~~~~~---~~~~~~~~~~l~~~-~-~g~T~l~~~~~~~~  128 (171)
T 2il5_A           89 YVKMTIGMPGL---SETQDVIEVEFFER-E-TGGTQMLFYYRSLV  128 (171)
T ss_dssp             EEEEEESCC-----CCCCEEEEEEEEEC-S-SSSEEEEEEEEEEE
T ss_pred             EEEEEEEecCC---CCCcEEEEEEEEEC-C-CCCEEEEEEEEecc
Confidence            66777654332   11246778899996 2 44899999886444

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=98.65  E-value=1.6e-06  Score=66.22  Aligned_cols=139  Identities=7%  Similarity=-0.048  Sum_probs=88.5

Q ss_pred             cceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCc----eeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeec
Q 030045            3 LAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQS----VQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVD   78 (183)
Q Consensus         3 ~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~----v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD   78 (183)
                      ...++..+..|+||+++||+++.|. ..+++|.+..    +..++   ++ -.+|..-.+.+...+|....+.-++.+++
T Consensus         7 ~~~~i~~~r~i~Ap~e~Vw~altdp-~~~~~W~~~~~g~~~~~~~---~d-~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~   81 (162)
T 3q64_A            7 VHSTFIIERLYPAPPSKVFFALGNA-DAKRRWFTDPDNPMPGRFE---MD-FRVGGKEVNAGGPKDGPIHVYTATYQDIV   81 (162)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHHHCH-HHHHHHSSCTTSCCGGGCE---EC-CSTTCEEEEEECCTTSCCEEEEEEEEEEE
T ss_pred             ccceEEEEEEeCCCHHHHHHHHCCH-HHHhhcCCCCCCccceEEE---EC-CccCCEEEEEEECCCCCEEEEEEEEEEEc
Confidence            3468899999999999999999975 6789999532    11222   34 34555555554313443345788888887


Q ss_pred             CCceEEEEEEE---eccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 030045           79 DENYITIFKLI---EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYII  155 (183)
Q Consensus        79 ~~~~~~~y~vi---EG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl  155 (183)
                      +.. ++.|+..   +|.    +......++++.|.   ++||+++++...-...+. ..... ..+....++..+++||.
T Consensus        82 p~~-rl~~~~~~~~~~~----~~~~s~v~~~l~~~---~~gT~lt~~~~~~~~~~~-~~~~~-~~~GW~~~L~~L~~~le  151 (162)
T 3q64_A           82 PDQ-RIVYSYDMLFGET----RISVSLATIQLFAE---GEGTRLVLTEQGAFLDGH-DTPST-REHGTGVLLDLLDAFLD  151 (162)
T ss_dssp             TTT-EEEEEEEEEETTE----EEEEEEEEEEEEEE---TTEEEEEEEEEEEEETTS-SCHHH-HHHHHHHHHHHHHHHHH
T ss_pred             CCC-EEEEEEEecCCCC----CCCceEEEEEEEEc---CCCEEEEEEEEecCccch-hHHHH-HHHHHHHHHHHHHHHHh
Confidence            754 3455543   232    23345678889997   567999998886433211 12222 45555777788888775


Q ss_pred             h
Q 030045          156 Q  156 (183)
Q Consensus       156 ~  156 (183)
                      .
T Consensus       152 ~  152 (162)
T 3q64_A          152 K  152 (162)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=98.65  E-value=2.7e-06  Score=65.39  Aligned_cols=144  Identities=9%  Similarity=-0.035  Sum_probs=89.7

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCc-eeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQS-VQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~-v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      ..++..++.|+||+++||+++-|. ..+.+|.+.. --.+...++| -.+|..-.+.+...+|....+.-++.++++..+
T Consensus         8 ~~~i~~~r~i~Ap~e~Vw~a~Tdp-e~l~~W~~~~~~~~~~~~~~d-~~~GG~~~~~~~~~~G~~~~~~g~v~ev~p~~r   85 (166)
T 3put_A            8 HTTFVIERRLTAPVARVFRAWSTP-ESKRQWFACHGEWVPLEYALD-FRPGGTERNYTADTDGLLHAYDARYIDIVPDTR   85 (166)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCH-HHHHHHHTCC---CCSEEEEC-CSTTCEEEEEEECTTSCEEEEEEEEEEEETTTE
T ss_pred             cceEEEEEEECCCHHHHHHHhCCH-HHHHhcCCCCCCceeeEEEeC-cccCCEEEEEEECCCCCEEEEEEEEEEEcCCcE
Confidence            467899999999999999999974 6789998422 0111122345 345544444443134543347888888987543


Q ss_pred             EEEEEEE-eccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhC
Q 030045           83 ITIFKLI-EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus        83 ~~~y~vi-EG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~~  157 (183)
                       +.|+.. ..+..  +......++++.|.   ++||.++++..+....+. ..... ..+....++..+.+||-..
T Consensus        86 -lv~t~~~~~~~~--~~~~s~vt~~l~~~---~~gT~ltl~~~~~~~~~~-~~~~~-~~~GW~~~L~~L~~~le~~  153 (166)
T 3put_A           86 -IIYAYEMKLGQT--RISASLVTVAFDVE---PSGTRMVFTEQVVFLDGY-GDNGA-RLQGTEIGLDNLELFLVRE  153 (166)
T ss_dssp             -EEEEEEEEETTE--EEEEEEEEEEEEEC---SSSEEEEEEEEEEEETTC-CCTTH-HHHHHHHHHHHHHHHHHHH
T ss_pred             -EEEEEEecCCCC--CCCceEEEEEEEEC---CCCEEEEEEEEecCccch-hhHHH-HHHHHHHHHHHHHHHHhcC
Confidence             455532 11111  23345678889996   678999998886643321 11222 4556677888899988654

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=98.63  E-value=3.2e-06  Score=65.36  Aligned_cols=142  Identities=13%  Similarity=0.022  Sum_probs=87.2

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      ..+++.++.|+||+++||+++.|. ..+++|++..=-.+...+++ -.+|..-.+.+...+|..-.+.-++.++++. ++
T Consensus        21 ~~~i~~~r~i~Ap~e~Vw~altdp-e~~~~W~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~-~r   97 (178)
T 1xuv_A           21 KQEIIITREFDAPRELVFKAFTDP-DLYTQWIGPRGFTTALKIFE-PKNGGSWQYIQKDPEGNEYAFHGVNHDVTEP-ER   97 (178)
T ss_dssp             CSEEEEEEEESSCHHHHHHHHHCH-HHHTTTCSSTTCEEEEEEEC-CSTTCEEEEEEECTTSCEEEEEEEEEEEETT-TE
T ss_pred             CcEEEEEEEECCCHHHHHHHhCCH-HHHHhCCCCCCccceEEEEe-cccCCEEEEEEECCCCCEEEEEEEEEEEeCC-CE
Confidence            357889999999999999999975 67899975321123334455 3566655555441244433577888888765 45


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHH-----HHHHHHHHHHHHHHHhh
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKV-----LEMMIDIVKNIDAYIIQ  156 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~-----~~~~~~~~k~ie~yLl~  156 (183)
                      +.|+..-++. +..-.....++++.|. + ++||.++++..|..     +......     ......++..|.+||-.
T Consensus        98 l~~~~~~~~~-~~~~~~~~v~~~l~~~-~-~ggT~lt~~~~~~~-----~~~~~~~~~~~~~~Gw~~~L~~Lk~~le~  167 (178)
T 1xuv_A           98 IISTFEFEGL-PEKGHVILDTARFEAL-P-GDRTKLTSHSVFQT-----IEDRDGMLQSGMEEGINDSYERLDELLEK  167 (178)
T ss_dssp             EEEEEEETTS-SSSCCCEEEEEEEEEE-T-TTEEEEEEEEECSS-----HHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCC-CCCCCcEEEEEEEEEc-C-CCCEEEEEEEEeCC-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            6666543221 1001246678889997 2 37899999888521     1111112     24446677777777744

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=98.62  E-value=2.6e-07  Score=68.61  Aligned_cols=100  Identities=13%  Similarity=-0.001  Sum_probs=70.6

Q ss_pred             cceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            3 LAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         3 ~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      ...+++.++.|+||+++||+++.|. ..+++|+|.       .+++ -.+|....+.+.  +|.   +.-++.++++. +
T Consensus         6 ~~~~i~~~~~i~ap~e~Vw~~ltd~-~~~~~W~~~-------~~~~-~~~G~~~~~~~~--~g~---~~~~v~e~~p~-~   70 (143)
T 1xn6_A            6 TLNDIKQTIVFNASIQKVWSVVSTA-EGIASWFMP-------NDFV-LEVGHEFHVQSP--FGP---SPCKVLEIDEP-N   70 (143)
T ss_dssp             SCCCEEEEEEESSCHHHHHHTTSCS-HHHHTTSCC-------BCCC-CCTTCEECBCCT--TCC---CCEEEEEEETT-T
T ss_pred             CCCEEEEEEEEcCCHHHHHHHHhCH-hHHHHhcCC-------CCcC-cCCCCEEEEEEc--CCC---ceEEEEEEeCC-C
Confidence            4567999999999999999999976 678999995       2344 356665444442  342   56788888874 5


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK  127 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~  127 (183)
                      ++.|+...+        ....++++.|. + +|||.++++.+...
T Consensus        71 ~l~~~~~~~--------~~~~~~~l~~~-~-~g~T~l~~~~~~~~  105 (143)
T 1xn6_A           71 HLSFSWDTD--------GWVVSFDLKDL-G-DNKTEFTLIHGGWK  105 (143)
T ss_dssp             EEEEEETTT--------TEEEEEEEEEE-E-TTEEEEEEEEECCC
T ss_pred             EEEEEEeCC--------CEEEEEEEEEC-C-CCcEEEEEEEEccC
Confidence            677776533        24567888887 2 44799988877433

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=98.59  E-value=1.9e-07  Score=70.93  Aligned_cols=135  Identities=13%  Similarity=0.048  Sum_probs=84.2

Q ss_pred             CCcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCC
Q 030045            1 MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDE   80 (183)
Q Consensus         1 m~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~   80 (183)
                      |....+++.++.|+||+++||+++.|. ..+++|+|. +...     + -.+|....+.+.  |+.  .+..++.++++ 
T Consensus         5 m~~~~~i~~~~~i~Ap~e~Vw~altdp-~~~~~W~~~-~~~~-----~-~~~Gg~~~~~~~--g~~--~~~~~v~e~~p-   71 (160)
T 2lak_A            5 MPESFVVRREAHLAAPPAAVFALMTDP-EKILRWMGT-EAEV-----E-PEPGGLYLVNVT--GAR--FARGSFREVVP-   71 (160)
T ss_dssp             SCSCCEEEEEEEESSCHHHHHHHHHCH-HHHHHTSCS-SEEE-----S-CSTTCCEEECSS--TTC--CSSCCEEEEET-
T ss_pred             CCCCceEEEEEEeCCCHHHHHHHhcCh-HHHhhhCCC-ccee-----e-ccCCCEEEEEEe--CCc--eEEEEEEEEcC-
Confidence            555678999999999999999999975 678999985 3222     3 234433334433  322  44557777776 


Q ss_pred             ceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhhC
Q 030045           81 NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus        81 ~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl~~  157 (183)
                      ++++.|+...++..+.+-.....++++.|.   ++||.++|+.+-.      +.+.. + .......++..+.++|-..
T Consensus        72 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~---~~gT~l~~~~~~~------~~~~~~~~~~~gw~~~L~~Lk~~le~~  141 (160)
T 2lak_A           72 VHRLAYSFGWDGSEVVPPGSSLVEIDLIEQ---GGGTLLRLTHSGL------PSAEQCAGHEEGWAHYLGRLTEVAAGR  141 (160)
T ss_dssp             TTEEEECCCCCSSSCCCTTSCEEEEEEEEC---SSSEEEEEEEECC------CSHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEEEEecCCCCCCCCcEEEEEEEEEC---CCCEEEEEEEeCC------CCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            455677654322100011246678889996   5689999877611      11221 2 4445567778888887654

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=98.58  E-value=2.4e-06  Score=63.90  Aligned_cols=134  Identities=10%  Similarity=0.094  Sum_probs=85.8

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccc-cCCceeeEEEEcCCCCCCccEEEEEEeecCCC-cceEEEEEEeecCCceE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSI-SPQSVQSCELIEGEWGKPGAVICWTFTRYAGN-PQIVKELIEVVDDENYI   83 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~-~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~-~~~~kErl~~iD~~~~~   83 (183)
                      +++.++.|+||+++||+++.|. ..+++| .+..--.+...+++ -.+|..-.+.+...+|. .-.+.-++.++++.+ +
T Consensus         3 ~i~~~~~i~Ap~e~Vw~altdp-e~~~~W~~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p~~-~   79 (144)
T 2l8o_A            3 KITVEVTVYAAIEKVWKYWNEP-AHIMKWCQASPEWHVPAAQND-LKAGGTFTTTMAAKDGSMSFDFGGVYDQVKTND-L   79 (144)
T ss_dssp             SEEEEEEECSCHHHHHHHHHCH-HHHHHHSTTCTTCEEEEEECC-CSTTCEEEEEEECTTSSCEEEEEEEEEEEETTT-E
T ss_pred             EEEEEEEECCCHHHHHHHHCCH-HHHhhccCCCCCcccceeEEc-cCCCCEEEEEEECCCCCceeeeeEEEEEEeCCC-E
Confidence            5788999999999999999975 678999 65321223334566 35665555554413453 234677888887654 5


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhChh
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHEE  159 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~~~~  159 (183)
                      +.|+. .|        ....++++.|.   ++||.++++..+   .+  ........+....++..+.+||-...+
T Consensus        80 l~~~~-~g--------~~~v~~~l~~~---~~gT~l~~~~~~---~~--~~~~~~~~~Gw~~~L~~L~~~le~~~~  138 (144)
T 2l8o_A           80 IEYTI-GD--------GRKVRIVFTHT---GDTTNIVESFDP---EE--TNPRELQQSGWQAILNSFKSYTENNLE  138 (144)
T ss_dssp             EEEEE-TT--------CCEEEEEEEEC---SSSEEEEEEECC---CS--SSCHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred             EEEEe-CC--------CeEEEEEEEEc---CCCEEEEEEEeC---CC--HHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            67774 22        24568888886   568988877654   11  111111455557788888888866544

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.53  E-value=1.9e-06  Score=63.50  Aligned_cols=126  Identities=16%  Similarity=0.151  Sum_probs=82.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      +++.++.|+|||++||+++.|. ..+++|.+..      .+++ -.+|..-.+.+. ...  ...+-++.++++. +++.
T Consensus         2 ~i~~~~~i~ap~e~Vw~altd~-~~~~~W~~~~------~~~~-~~~Gg~~~~~~~-~~~--~~~~~~v~~~~p~-~~l~   69 (135)
T 3q6a_A            2 DIITKMQVDVPRETVFEAFVDP-EKIGGFWFSS------SSER-WEQGKTITLRYE-EYD--AELNINIERVEDN-QLIA   69 (135)
T ss_dssp             CEEEEEEESSCHHHHHHHHHCT-TTGGGTSSSE------ESSC-CCTTCEEEEECG-GGT--C-CEEEEEEEETT-TEEE
T ss_pred             eEEEEEEeCCCHHHHHHHHcCH-HHhcccCCCC------Cccc-ccCCCEEEEEEc-CcC--ceEEEEEEEEcCC-CEEE
Confidence            4789999999999999999986 6789997732      2456 467766666654 221  2345567777665 4566


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhhChhh
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYIIQHEEA  160 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl~~~~~  160 (183)
                      |+...|          ..++++.|.   ++||.++++....+  +.  .... . .......++..+.+||-.....
T Consensus        70 ~~~~~g----------~~~~~l~~~---~~gT~l~~~~~~~~--~~--~~~~~~~~~~GW~~~l~~L~~~le~g~~l  129 (135)
T 3q6a_A           70 FTWGAH----------PITIQFEES---EAGTVVTTTEKDFD--TQ--DVKQLLGQKEGWVYMLSCLKVYLEHGVTI  129 (135)
T ss_dssp             EEETTE----------EEEEEEEEE---TTEEEEEEEECCCC--SS--CHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             EEEcCC----------eEEEEEEEC---CCCEEEEEEEcCCC--cc--hHHHHhhchhCHHHHHHHHHHHHhcCcch
Confidence            765431          678889996   67898887755211  11  1111 1 4455567788888888665443

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=98.50  E-value=1.2e-05  Score=60.06  Aligned_cols=130  Identities=10%  Similarity=0.093  Sum_probs=82.3

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccc-cCC-ceeeEEEEcCCCCCCccEEEEEEeecCCC-cceEEEEEEeecCCce
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSI-SPQ-SVQSCELIEGEWGKPGAVICWTFTRYAGN-PQIVKELIEVVDDENY   82 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~-~P~-~v~s~e~~eGd~g~~GsiR~~~~~~~gg~-~~~~kErl~~iD~~~~   82 (183)
                      +++.++.|+||+++||+++.|. ..+++| ++. .+ .+...+++ -.+|..-.+.+...+|. .-.+.-++.++++. +
T Consensus         2 ~i~~~~~i~Ap~e~Vw~altdp-~~~~~W~~~p~~~-~~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p~-~   77 (144)
T 2lgh_A            2 KISIEAHIEQEIEAVWWAWNDP-DCIARWNAASSDW-HTTGSRVD-LVVGGRFCHHMAAKDGSAGFDFTGTFTRVEAP-T   77 (144)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCH-HHHTTSSSCSTTE-EEEEEEEC-CSTTCEEEEEEEETTSSCEEEEEEEEEEEETT-T
T ss_pred             EEEEEEEeCCCHHHHHHHhCCH-HHHhccCCCCCCc-ccceEEEC-CCCCCEEEEEEECCCCCceEEeEEEEEEEeCC-C
Confidence            5788999999999999999975 678999 652 23 22233455 34555444444313453 23467788888764 4


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhh
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ  156 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~  156 (183)
                      ++.|+. .|        ....++++.|.   ++||.++.+..+  .+.  ...+. ..+....++..+.+||-.
T Consensus        78 ~l~~~~-~~--------~~~~~~~l~~~---~~gT~l~~~~~~--~~~--~~~~~-~~~Gw~~~L~~L~~~le~  134 (144)
T 2lgh_A           78 RLSFVM-DD--------GREVDVQFASE---PGGTWVQETFDA--ETS--HTPAQ-QQAGWQGILDNFKRYVEA  134 (144)
T ss_dssp             EEEEEE-TT--------CCEEEEEEEEE---TTEEEEEEEEEC--CTT--SCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEe-cC--------CcEEEEEEEEc---CCCEEEEEEEEC--CCH--HHHHH-HHHHHHHHHHHHHHHHhh
Confidence            567774 22        14557888887   568888877664  111  11112 455557778888888754

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=98.50  E-value=5.7e-06  Score=62.14  Aligned_cols=139  Identities=9%  Similarity=-0.101  Sum_probs=83.2

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEE--EEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCE--LIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e--~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      .+++.++.|+||+++||+++.|. ..+.+|.+..--.+.  ..+++ -.+|..-.+.+...+|....+.-++.++++.+ 
T Consensus         2 ~~i~~~r~i~Ap~e~Vw~altdp-~~~~~W~~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~-   78 (152)
T 3eli_A            2 ADLRLEREFAVAPEALFAWVSDG-AKLLQWWGPEGLHVPADQHDLD-FTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQ-   78 (152)
T ss_dssp             CEEEEEEEESSCHHHHHHHTTCH-HHHHHHCSSTTCBCCTTSBCCC-CSSSEEEEEEEECTTCCEEEEEEEEEEEETTT-
T ss_pred             ceEEEEEEECCCHHHHHHHHcCH-HHHhhccCCCCcccccceeEEc-ccCCcEEEEEEECCCCCEEEEEEEEEEEcCCC-
Confidence            36889999999999999999975 678899763211111  22345 35665555555413453335778888887754 


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHh
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYII  155 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl  155 (183)
                      ++.|+....+.-+.+-.....++++.|.   ++||.++++-.  ..    +.++. + ..+....++..+.+||-
T Consensus        79 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~---~~gT~l~l~~~--~~----~~~~~~~~~~~GW~~~L~~L~~~l~  144 (152)
T 3eli_A           79 SVGFTWGWHDDDDRRGAESHVMFIVEPC---AKGARLILDHR--EL----GDDEMSLRHEEGWTSSLRKLAAELA  144 (152)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEECCBC-----CEEEEEEEE--SC----SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecCCCCCCCCcEEEEEEEEEC---CCCEEEEEEEc--cC----CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566643222111012355678888886   56788876544  11    12222 2 45555777888888874

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=98.50  E-value=1.1e-06  Score=65.80  Aligned_cols=98  Identities=12%  Similarity=0.119  Sum_probs=70.9

Q ss_pred             CCcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCC
Q 030045            1 MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDE   80 (183)
Q Consensus         1 m~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~   80 (183)
                      |+...+++.++.|+||+++||+++.|. ..+++|+|. .      +++ -.+|....+.+.  +|   .+.-++.++++.
T Consensus         1 M~~~~~i~~~~~i~Ap~e~Vw~altd~-~~~~~W~~~-~------~~~-~~~Gg~~~~~~~--~g---~~~~~v~e~~p~   66 (146)
T 1xn5_A            1 MTRLPDIKKEVRFNAPIEKVWEAVSTS-EGLAFWFME-N------DLK-AETGHHFHLQSP--FG---PSPCQVTDVERP   66 (146)
T ss_dssp             CCSCCCEEEEEEESSCHHHHHHHTTSH-HHHHTTSCC-B------CCC-SCTTCEEEEECS--SC---EEEEEEEEEETT
T ss_pred             CCCCcEEEEEEEEcCCHHHHHHHHhCh-hHHHHhcCC-C------CCC-ccCCCEEEEEec--CC---ceEEEEEEEeCC
Confidence            777889999999999999999999976 678999984 1      344 356665444442  33   478888989875


Q ss_pred             ceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEE
Q 030045           81 NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYK  124 (183)
Q Consensus        81 ~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~  124 (183)
                       +++.|+... .       ....++++.|.   ++||.++++..
T Consensus        67 -~~l~~~~~~-~-------~~~~~~~l~~~---~~gT~l~~~~~   98 (146)
T 1xn5_A           67 -IKLSFTWDT-D-------GWSVTFHLKEE---ENGTIFTIVHS   98 (146)
T ss_dssp             -TEEEEEETT-T-------TEEEEEEEEEC---SSSEEEEEEEE
T ss_pred             -cEEEEEEeC-C-------CEEEEEEEEEc---CCCEEEEEEEE
Confidence             456676542 1       23567888886   56798888765

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.47  E-value=4.3e-06  Score=64.03  Aligned_cols=140  Identities=11%  Similarity=0.107  Sum_probs=87.3

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      ..+++.++.|+||+++||+++.|. ..+++|.+..--.+...+++ -.+|..-.+.+..++|....+.-++.++++.. +
T Consensus        12 ~~~i~~~~~i~Ap~e~Vw~altdp-~~~~~W~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~-r   88 (164)
T 3pu2_A           12 ATRLEFRRHFAATPEQLWAALTSP-ALLPAWLFARGWPMTECVFE-PHKGGLIRQVWTGPEGRTRGLTGRVILAEPPH-R   88 (164)
T ss_dssp             TTEEEEEEEESSCHHHHHHHHHCT-TTGGGTSCBTTBCEEEEEEC-CSTTCEEEEEEECGGGCEEEEEEEEEEEETTT-E
T ss_pred             CceEEEEEEECCCHHHHHHHhcCH-HHHhhEeCCCCeeeEEEEEe-ccCCCEEEEEEECCCCCEEEEEEEEEEEcCCC-E
Confidence            467899999999999999999975 67899987321223334556 35665555554313343335777888887754 4


Q ss_pred             EEEEEE-eccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH---H-HHHHHHHHHHHHHHHHhh
Q 030045           84 TIFKLI-EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES---K-VLEMMIDIVKNIDAYIIQ  156 (183)
Q Consensus        84 ~~y~vi-EG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~---~-~~~~~~~~~k~ie~yLl~  156 (183)
                      +.|+.. .++..+ .  ....++++.|.   ++||.++++..|..  .  .....   . ..+....++..+++||.+
T Consensus        89 l~~t~~~~~~~~~-~--~s~vt~~l~~~---~~gT~l~l~~~~~~--~--~~~~~~~~~~~~~GW~~~L~~L~~~l~~  156 (164)
T 3pu2_A           89 LIHSELYDEDWTG-G--ETLVTLQLLPV---EGGTELAMAVDYAT--P--EARDAVAASAMATEMEEAYRHLDVMLAA  156 (164)
T ss_dssp             EEEEEBCC---CC-S--CEEEEEEEEEE---TTEEEEEEEEECSS--T--THHHHHHTSTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeccCCCCC-C--CEEEEEEEEEc---CCCEEEEEEEEeCC--H--HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            566643 221111 1  25678889997   56799998887421  1  11111   0 234557778888888865

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=98.40  E-value=1.4e-05  Score=61.14  Aligned_cols=139  Identities=13%  Similarity=0.069  Sum_probs=85.3

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCc-eeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQS-VQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~-v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      .+++.++.|+||+++||+++.|. ..+++|.+.. +. +...+++ -.+|..-.+.+...+|......-++.++++.+ +
T Consensus        12 ~~i~~~~~i~Ap~e~Vw~altdp-~~~~~W~~p~~~~-~~~~~~d-~~~Gg~~~~~~~~~~g~~~~~~~~v~e~~p~~-r   87 (172)
T 2ldk_A           12 LSFSIVAEFDADVKRVWAIWEDP-RQLERWWGPPTWP-ATFETHE-FTVGGKAAYYMTGPDGTKARGWWQFTTIEAPD-H   87 (172)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHCH-HHHHTTSSCTTSC-EEEEEEC-CSTTCEEEEEEECTTSCEEEEEEEEEEECSSS-E
T ss_pred             ceEEEEEEeCCCHHHHHHHhCCH-HHHHhccCCCCcc-cceEEEe-ecCCCEEEEEEECCCCCEEeeEEEEEEEcCCC-E
Confidence            57899999999999999999975 6788997532 22 2333456 35666555555413444335778899997654 5


Q ss_pred             EEEEEEeccc--ccc-ceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-HH-----HHHHHHHHHHHHHHH
Q 030045           84 TIFKLIEGNV--LEM-LYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-KV-----LEMMIDIVKNIDAYI  154 (183)
Q Consensus        84 ~~y~viEG~~--l~~-~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~~-----~~~~~~~~k~ie~yL  154 (183)
                      +.|+..-.+.  .+. .......++++.|.   ++||.++++..+..      .... .+     .+....++..+.+||
T Consensus        88 l~~~~~~~~~~g~p~~~~~~~~v~~~l~~~---~~gT~lt~~~~~~~------~~~~~~~~~~~~~~Gw~~~L~~L~~~l  158 (172)
T 2ldk_A           88 LEFDDGFADEHGAPVDELGVTHATVKLEPL---ENRTRMTIISTFES------EEQMQKMAEMGMEEGMREAIEQIDAVL  158 (172)
T ss_dssp             EEEEEEEBCSSCCBCTTTCEEEEEEEEEEE---TTEEEEEEEEEESC------HHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecCCCCCccCCCccEEEEEEEEEc---CCCEEEEEEEEcCC------HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            5666543221  110 01256778889997   66899998887521      1111 11     333456667777776


Q ss_pred             hh
Q 030045          155 IQ  156 (183)
Q Consensus       155 l~  156 (183)
                      -+
T Consensus       159 e~  160 (172)
T 2ldk_A          159 SE  160 (172)
T ss_dssp             TC
T ss_pred             HH
Confidence            43

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.39  E-value=1.4e-05  Score=61.45  Aligned_cols=141  Identities=12%  Similarity=0.039  Sum_probs=86.1

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCC-ceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQ-SVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~-~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      ..++..++.|+||+++||+++.|. ..+++|.+. .+. +...+++ -.+|..-.+.+...+|..-.+.-++.++++.+ 
T Consensus         9 ~~~i~~~r~i~Ap~e~Vw~altdp-~~~~~W~~p~~~~-~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~~-   84 (178)
T 1xfs_A            9 ELDLMLKRELAVPVNLVWRGLTEP-ELLKKWFVPKPWS-ISDCRVD-LRPGGEFYTVMQDPEGNKFPNSGCFLEVTDEK-   84 (178)
T ss_dssp             TTEEEEEEEESSCHHHHHHHHHCH-HHHTTTSSCTTCE-EEEEEEC-CSTTCEEEEEEECTTCCEEEEEEEEEEEETTT-
T ss_pred             CceEEEEEEecCCHHHHHHHhCCH-HHHhhCCCCCCee-eeEEEEe-eECCcEEEEEEECCCCCEEEEEEEEEEEeCCC-
Confidence            357899999999999999999975 678999753 232 2334456 46776666665412443335677888887654 


Q ss_pred             EEEEEEE-eccccccc-e-----E----EEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHH-----HHHHHHH
Q 030045           83 ITIFKLI-EGNVLEML-Y-----K----SFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKV-----LEMMIDI  146 (183)
Q Consensus        83 ~~~y~vi-EG~~l~~~-~-----~----sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~-----~~~~~~~  146 (183)
                      ++.|+.. .++-.+.. +     .    ....++++.|.   ++||+++++..|..     +......     .+....+
T Consensus        85 rl~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~---~~gT~l~~~~~~~~-----~~~~~~~~~~~~~~Gw~~~  156 (178)
T 1xfs_A           85 RLIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPT---SSGTRYTACAMHNT-----PGQRKLHEEMGFHEGWGTT  156 (178)
T ss_dssp             EEEEESSEEGGGEECCC-----------CCEEEEEEEEC---SSSEEEEEEEECSS-----HHHHHHHHTTTHHHHHHHH
T ss_pred             EEEEEEEEcCCCCccccccccccccccccEEEEEEEEEC---CCCEEEEEEEEcCC-----HHHHHHHHhhhHHHHHHHH
Confidence            5566643 22111100 0     0    35678888886   56899998887421     1111112     3444667


Q ss_pred             HHHHHHHHhh
Q 030045          147 VKNIDAYIIQ  156 (183)
Q Consensus       147 ~k~ie~yLl~  156 (183)
                      +..+.+||-.
T Consensus       157 l~~L~~~le~  166 (178)
T 1xfs_A          157 ITQLEELLKQ  166 (178)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777777643

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=98.30  E-value=3.9e-05  Score=60.10  Aligned_cols=122  Identities=8%  Similarity=-0.011  Sum_probs=78.6

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT   84 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~   84 (183)
                      .+++.++.|+|||++||+++.|. ..+++|+|. ....++      .+|....+.+. .    ....-++.++++.. ++
T Consensus        36 ~~i~~~~~i~Ap~e~VW~altdp-~~l~~W~~~-~~~~d~------~~Gg~~~~~~~-~----~~~~~~v~e~~p~~-rl  101 (184)
T 2nn5_A           36 IYFGTERAISASPQTIWRYLTET-DKLKQWFPE-LEIGEL------GVNGFWRFILP-D----FEETMPFTDYAEEK-YL  101 (184)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCH-HHHHHHCTT-EEEEEC------STTCEEEEEET-T----EEEEEEEEEEETTT-EE
T ss_pred             cEEEEEEEeCCCHHHHHHHHcCH-HHHHHhCCC-cccccc------CCCCEEEEEEe-C----CCceEEEEEecCCC-EE
Confidence            47889999999999999999975 678999993 333332      23333333433 2    24566888887765 45


Q ss_pred             EEEEEeccccccceEEEEEEEEEEe-eeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhh
Q 030045           85 IFKLIEGNVLEMLYKSFCSVAKVTQ-KDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ  156 (183)
Q Consensus        85 ~y~viEG~~l~~~~~sy~~t~~v~p-~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~  156 (183)
                      .|+.- +         ...++++.| .   ++||.++++-.|..   ..+............++..+.++|-.
T Consensus       102 ~~~~~-~---------~~v~~~l~~~~---~~gT~l~~~~~~~~---g~~~~~~~~~~GW~~~L~~Lk~~le~  158 (184)
T 2nn5_A          102 GVTWD-T---------GIIYFDLKEQA---PHQTLLVFSESLPE---NFTTPRHKDIAGWSIVLNRLKQVVET  158 (184)
T ss_dssp             EEEET-T---------EEEEEEEEEEE---TTEEEEEEEEEECT---TCSSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEc-C---------eEEEEEEEECC---CCCEEEEEEEeccC---CccchhhHHHHHHHHHHHHHHHHHhc
Confidence            55542 1         456888889 6   67899998843322   11111211445557778888888865

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=98.29  E-value=6.8e-05  Score=57.67  Aligned_cols=138  Identities=12%  Similarity=0.023  Sum_probs=83.7

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCC-ceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQ-SVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~-~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      .+++.++.|+||+++||+++.|. ..+++|++. .+ .+...++| -.+|..-.+.+...+|....+.-++.++++.+ +
T Consensus        16 ~~i~~~~~i~Ap~e~Vw~a~tdp-e~~~~W~~p~~~-~~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~-r   91 (175)
T 2lf2_A           16 KTITIKREFAAVRAIVWEAFTRA-EILDQWWAPKPW-KAKTKSMD-FKEGGTWLYAMVGPNGEEHWSICEYAIIKPIE-R   91 (175)
T ss_dssp             TEEEEEEEESSCHHHHHHHHTCH-HHHHHSSSSSSS-EEEEEEEC-CSTTCEEEEEEECSSSCEEEEEEEECCCCSSS-E
T ss_pred             ceEEEEEEEcCCHHHHHHHhCCH-HHHhhCcCCCCc-cceEEEEe-ccCCCEEEEEEECCCCCEEEeEEEEEEEcCCC-E
Confidence            57899999999999999999975 678999752 22 22333456 35665545444313454334778899997754 4


Q ss_pred             EEEEEEec--ccccc-ceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-H-----HHHHHHHHHHHHHH
Q 030045           84 TIFKLIEG--NVLEM-LYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-V-----LEMMIDIVKNIDAY  153 (183)
Q Consensus        84 ~~y~viEG--~~l~~-~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~-----~~~~~~~~k~ie~y  153 (183)
                      +.|+..-+  +..+. .......++++.|.   ++||.++.+..|.       +++. + .     .+....++..+.+|
T Consensus        92 l~~t~~~~~~~g~p~~~~~~~~v~~~l~~~---~~gT~l~~~~~~~-------~~~~~~~~~~~~~~~Gw~~~L~~L~~~  161 (175)
T 2lf2_A           92 FTGKDGFTDASGKLNTEMPRSNWDMRFIDK---GEITEVQYHISYD-------DVAQLEATIQMGFKEGITMAMENLDEL  161 (175)
T ss_dssp             EEEEEEEESSTTCCCTTSCCEEEEEEEEEE---TTEEEEEEEEECS-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCCcCCCCCcEEEEEEEEEC---CCCEEEEEEEecC-------CHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            55554321  11110 11245678888997   6689888776631       1221 1 1     23345667777777


Q ss_pred             Hhh
Q 030045          154 IIQ  156 (183)
Q Consensus       154 Ll~  156 (183)
                      |-.
T Consensus       162 le~  164 (175)
T 2lf2_A          162 LVS  164 (175)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            743

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.25  E-value=8.2e-06  Score=62.10  Aligned_cols=139  Identities=10%  Similarity=0.039  Sum_probs=84.4

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCC-ceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQ-SVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~-~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      .+++.++.|+||+++||+++-|. ..+++|++. .+ .+...+++ -.+|..-.+.+..++|..- +.-++.++++.+ +
T Consensus         8 ~~i~~~~~i~Ap~e~Vw~a~tdp-e~~~~W~~p~~~-~~~~~~~d-~~~Gg~~~~~~~~~~G~~~-~~g~v~e~~p~~-r   82 (164)
T 2l9p_A            8 NKIIFTRTFSAPINKVFDAYTKR-ELFEQWFHPQDA-SVTVYDFN-ATKGGSAFYAIQAPQMISY-TIAEYLQVDAPY-Y   82 (164)
T ss_dssp             SEEEECCEESSCHHHHHHHHHCH-HHHTTTCCCTTC-EEEEEECC-CSTTEEEEEEEEETTEEEE-EEEEESCCBTTT-E
T ss_pred             ceEEEEEEeCCCHHHHHHHhCCH-HHHHhccCCCCc-eeeEEEEe-ccCCCEEEEEEECCCCCEE-EEEEEEEEcCCC-E
Confidence            57899999999999999999975 678899753 22 23334566 4566554444431344222 788899998755 4


Q ss_pred             EEEEEEecc--cccc-ceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH-----HHHHHHHHHHHHHHHHh
Q 030045           84 TIFKLIEGN--VLEM-LYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK-----VLEMMIDIVKNIDAYII  155 (183)
Q Consensus        84 ~~y~viEG~--~l~~-~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~-----~~~~~~~~~k~ie~yLl  155 (183)
                      +.|+-.-++  ..+. .......++++.|.   ++||.++.+..|..     ......     ..+....++..+.+||-
T Consensus        83 l~~t~~~~~~~g~p~~~~~~~~v~~~l~~~---~~gT~l~~~~~~~~-----~~~~~~~~~~~~~~Gw~~~L~~L~~~le  154 (164)
T 2l9p_A           83 IEYLDYFATSKGEKDTSMPGMHITLNFEEV---KGKTTVTSTSTFPT-----ESAAQQAIDMGVETGMNSTLNQLEKLLN  154 (164)
T ss_dssp             EEEEEEEEBTTBSCCSSSCCEEEEEEECCC---SSSEEEEEEEECSS-----TTHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCCccCCCCceEEEEEEEEC---CCCEEEEEEEEcCC-----HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            566543221  1100 01135678888886   56898887765321     111111     13344667777877775


Q ss_pred             h
Q 030045          156 Q  156 (183)
Q Consensus       156 ~  156 (183)
                      +
T Consensus       155 ~  155 (164)
T 2l9p_A          155 Q  155 (164)
T ss_dssp             S
T ss_pred             H
Confidence            4

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=98.25  E-value=3.6e-05  Score=59.23  Aligned_cols=140  Identities=16%  Similarity=0.187  Sum_probs=84.5

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccC-CceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISP-QSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P-~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      ..++..+..|+||+++||+++-+. ..+.+|.+ ..+. +...++| -.+|..-.+.+..++|..-.+.-++.++++.. 
T Consensus        12 ~~~i~~~r~i~Ap~e~Vw~a~Tdp-e~l~~W~~p~~~~-~~~~~~d-~r~GG~~~~~~~~~~G~~~~~~g~~~ev~p~~-   87 (168)
T 3uid_A           12 TLTLTITAEFAAPVTRIWQIYADP-RQLEKVWGPPSHP-ATVVDHD-LRPGGRVTYFMTGPDGEKYAGYWEITAVDEPH-   87 (168)
T ss_dssp             TTEEEEEEEESSCHHHHHHHHHSH-HHHHHHHCCTTSC-CEEEEEC-CSTTCEEEEEEECTTSCEEEEEEEEEEEETTT-
T ss_pred             CCEEEEEEEEcCCHHHHHHHhCCH-HHHhhEeCCCCee-eeEEEEc-ccCCcEEEEEEECCCCCEEeeEEEEEEEeCCc-
Confidence            357889999999999999999974 67889864 3222 2334455 34554444444313453335778888888754 


Q ss_pred             EEEEEE--E--eccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH------HHHHHHHHHHHHHH
Q 030045           83 ITIFKL--I--EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK------VLEMMIDIVKNIDA  152 (183)
Q Consensus        83 ~~~y~v--i--EG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~------~~~~~~~~~k~ie~  152 (183)
                      ++.|+-  -  +|.... .......++++.|.   ++||+++++..|..     . +..+      ..+....++..+++
T Consensus        88 rlv~t~~~~~~~g~p~~-~~~~s~vt~~l~~~---~~gT~lt~~~~~~~-----~-~~~~~~~~~g~~~GW~~~L~~L~~  157 (168)
T 3uid_A           88 SFSFLDGFADEDFNPNT-DLPVSTNVYTFTEH---DGGTRATYVGTYAS-----A-EALQQVLDMGVIEGASSAINQIDA  157 (168)
T ss_dssp             EEEEEEEEECTTSCBCS-SCCCEEEEEEEEEE---TTEEEEEEEEECSC-----H-HHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             EEEEEEeeccCCCCcCC-CCCcEEEEEEEEEC---CCCEEEEEEEecCC-----H-HHHHHHHHhcHHHHHHHHHHHHHH
Confidence            445554  2  232210 11235678899997   67899988754311     1 1111      23344677788888


Q ss_pred             HHhhC
Q 030045          153 YIIQH  157 (183)
Q Consensus       153 yLl~~  157 (183)
                      ||.+.
T Consensus       158 ~l~~~  162 (168)
T 3uid_A          158 LLTAT  162 (168)
T ss_dssp             HTCSC
T ss_pred             HHHhh
Confidence            87653

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=98.23  E-value=1.4e-05  Score=60.24  Aligned_cols=130  Identities=6%  Similarity=0.020  Sum_probs=79.9

Q ss_pred             cceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            3 LAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         3 ~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      ...+++.++.|+|||++||+++.|. ..+++|.|.       .+++ -.+|..-.+. . +.+.  .+.-++.++++.. 
T Consensus         7 ~~~~i~~~~~i~Ap~e~Vw~altdp-~~~~~W~~~-------~~~~-~~~Gg~~~~~-~-~~g~--~~~g~v~e~~p~~-   72 (151)
T 3q63_A            7 ENRTVVVERQISHPPEKLWRALTQP-HLIEEWLMK-------NDFK-PAVGHRFNIS-A-DWGG--VLDCEVLAVEPNK-   72 (151)
T ss_dssp             --CEEEEEEEESSCHHHHHHHHHCH-HHHHHHSCE-------ECCC-SSTTCEEEEE-C-TTSC--EEEEEEEEEETTT-
T ss_pred             CCCeEEEEEEeCCCHHHHHHHHcCH-HHHHhhcCc-------CCCc-cCCCCEEEEE-C-CCCC--EEEEEEEEEeCCC-
Confidence            3468899999999999999999975 678999983       1344 3566554444 3 3332  5778888887754 


Q ss_pred             EEEEEEEecc--ccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHh
Q 030045           83 ITIFKLIEGN--VLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYII  155 (183)
Q Consensus        83 ~~~y~viEG~--~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl  155 (183)
                      ++.|+...++  ..  .-..-..++++.|.   ++||.++++.....  ..  .... . .......++..+.+||-
T Consensus        73 ~l~~~~~~~~~~~~--~~~~s~v~~~l~~~---~~gT~l~l~~~g~~--~~--~~~~~~~~~~GW~~~L~~L~~~le  140 (151)
T 3q63_A           73 TLSYTWNLAHQDPA--FDLRSVVTFTLTPT---PTGTHLRMEQSGFR--PD--QRRAYGGAKMGWPQFFEKLEQLLD  140 (151)
T ss_dssp             EEEEECBBCCSSTT--TCBCCEEEEEEEEC---SSSEEEEEEEECCC--TT--CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEecCCCCCC--CCCCeEEEEEEEEc---CCCEEEEEEEeCCC--cc--hHHHHHhhhhCHHHHHHHHHHHHh
Confidence            5566654321  11  11133567888886   56798887765222  11  1111 1 33444667777777764

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=98.22  E-value=1.7e-05  Score=61.04  Aligned_cols=99  Identities=13%  Similarity=0.044  Sum_probs=57.8

Q ss_pred             cceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecC-Cc
Q 030045            3 LAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDD-EN   81 (183)
Q Consensus         3 ~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~-~~   81 (183)
                      .....+.+++|++|+++||+++.|+ ..+|.|+|+ ++++....++      -+..+.. +.|   .++=|++. |. ..
T Consensus        25 ~m~~~~~si~I~ap~eeVy~~~~D~-e~lP~W~~~-l~~~~~~~~~------~w~a~~~-p~G---~v~v~~~~-~~~~g   91 (156)
T 2qpv_A           25 VMQSRIIHLSVEKPWAEVYDFAANP-GNMPRWAAG-LAGGLEADGE------DWIAKGG-PLG---EVRVNFAP-HNEFG   91 (156)
T ss_dssp             CCCEEEEEEEESSCHHHHHHHHHCG-GGGGGTCGG-GTTCCEEETT------EEEEECS-SSC---EEEEEECC-CCSSC
T ss_pred             CccceEEEEEEcCCHHHHHHHHHCh-hhHHHHHHh-hhhhcccCCC------cEEEecc-CCC---cEEEEEec-CCCce
Confidence            3456789999999999999999987 678999994 6665212222      1111111 222   23333322 11 12


Q ss_pred             eEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEE
Q 030045           82 YITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTY  123 (183)
Q Consensus        82 ~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~  123 (183)
                      ....+..+.++.      .-...+++.|.   ++||.|+|++
T Consensus        92 v~d~~~~l~~g~------~~~~~~rv~p~---g~GTeV~~tl  124 (156)
T 2qpv_A           92 VIDHVVTLPDGL------KVYNALRVTPN---GSGTEVSFTL  124 (156)
T ss_dssp             BCCEEEECTTSC------EEEEEEEEEEE---TTEEEEEEEE
T ss_pred             EEEEEEecCCCc------EEEEEEEEEeC---CCCEEEEEEE
Confidence            222444444322      12235778886   6679999998

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=98.10  E-value=1.7e-06  Score=65.31  Aligned_cols=95  Identities=12%  Similarity=0.010  Sum_probs=64.7

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      ..+++.++.|+||+++||+++.|. ..+++|+|.       .+++ -.+|....+.+.  +|.   +.-++.++++. ++
T Consensus         9 ~~~i~~~~~i~Ap~e~Vw~altd~-~~~~~W~~~-------~~~~-~~~Gg~~~~~~~--~g~---~~~~v~e~~p~-~~   73 (152)
T 2kew_A            9 LPDITKSITLEAPIQKVWETVSTS-EGIAKWFMP-------NDFQ-LKEGQEFHLQSP--FGP---SPCKVLAVQAP-TE   73 (152)
T ss_dssp             SCCEEEEEEECSCHHHHHHHSSSS-HHHHHHHCS-------CCCC-SCSSCCBCSSSS--CCS---CCBEEEEEETT-TE
T ss_pred             ccEEEEEEEECCCHHHHHHHHhCH-HHHHHhcCC-------CCCC-CCCCCEEEEEec--CCc---eEEEEEEEeCC-cE
Confidence            368999999999999999999976 678999985       2344 345554333332  232   45677778775 45


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEE
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYK  124 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~  124 (183)
                      +.|+...+        ....++++.|.   ++||+++++..
T Consensus        74 l~~~~~~~--------~~~~~~~l~~~---~~gT~l~~~~~  103 (152)
T 2kew_A           74 LSFEWDTE--------GWVVTFQLEDL---GEKTGFTLIHS  103 (152)
T ss_dssp             EEEECTTS--------CCEEEEEEECC---SSCEEEEEEEC
T ss_pred             EEEEEccC--------CEEEEEEEEEC---CCCEEEEEEEE
Confidence            66664322        23457888886   55788887654

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=97.96  E-value=8.6e-05  Score=58.24  Aligned_cols=130  Identities=9%  Similarity=0.030  Sum_probs=83.6

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC--------------CCcce
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA--------------GNPQI   69 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g--------------g~~~~   69 (183)
                      ..+++.++.|++|+++||+++.|. ..+++|.+..       +++ -.+|....+.+. ..              |....
T Consensus        18 ~~~i~~~~~i~Ap~e~Vw~altdp-e~~~~W~~~~-------~~d-~~~Gg~~~~~~~-~~~~~~~~~p~~~~~~g~~~~   87 (191)
T 2k5g_A           18 AQSIRFERLLPGPIERVWAWLADA-DKRARWLAGG-------ELP-RQPGQTFELHFN-HAALTAETAPARYAQYDRPIV   87 (191)
T ss_dssp             CSSEEEEEEESSSSHHHHHHHHCH-HHHTTTSCCC-------CCC-SSTTCEEEEEEC-GGGSCCSSCCSSCSGGGSCEE
T ss_pred             CCeEEEEEEeCCCHHHHHHHHcCH-HHHhhcCCCC-------CCC-ccCCCEEEEEEc-CCccccccCcccccccCCCce
Confidence            457899999999999999999975 6789999851       345 356766666664 22              11224


Q ss_pred             EEEEEEeecCCceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEE-EEecCCCCCCchH-H-HHHHHHHH
Q 030045           70 VKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYK-YEKQNENVPDLES-K-VLEMMIDI  146 (183)
Q Consensus        70 ~kErl~~iD~~~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~-ye~~~~~~~~p~~-~-~~~~~~~~  146 (183)
                      +.-++.++++.+ ++.|+...++.   + .....++++.|.   ++||.++++.. |.       .+.. . .......+
T Consensus        88 ~~g~v~e~~pp~-rl~~~~~~~~~---~-~~~~v~~~l~~~---~~gT~l~~~~~~~~-------~~~~~~~~~~GW~~~  152 (191)
T 2k5g_A           88 ARHTLLRCEPPR-VLALTWGGGAG---E-APSEVLFELSEA---GEQVRLVLTHTRLA-------DRAAMLDVAGGWHAH  152 (191)
T ss_dssp             EEEEEEEEETTT-EEEEECCCCSS---S-SCCEEEEEEEEC---SSSEEEEEEEECCC-------SHHHHHHHTTTTTTH
T ss_pred             eEEEEEEecCCC-EEEEEeecCCC---C-CCEEEEEEEEEc---CCCEEEEEEEecCC-------CHHHHHHHHHhHHHH
Confidence            677888887655 56666543321   1 124567888886   56788877765 31       1121 1 23333567


Q ss_pred             HHHHHHHHhhCh
Q 030045          147 VKNIDAYIIQHE  158 (183)
Q Consensus       147 ~k~ie~yLl~~~  158 (183)
                      +..+.++|-..+
T Consensus       153 L~~L~~~le~~~  164 (191)
T 2k5g_A          153 LAVLAGKLAGQA  164 (191)
T ss_dssp             HHHHHHHHHTSC
T ss_pred             HHHHHHHHCCCC
Confidence            788888886553

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=97.81  E-value=0.0002  Score=54.67  Aligned_cols=132  Identities=11%  Similarity=0.080  Sum_probs=74.2

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      ...+..+..++||+++||+++-|- ..+.+|.++.....++      .+|..  +.|. .|    .+.-++.++++..+ 
T Consensus        18 ~~~i~~~r~~~ap~e~Vw~A~Tdp-e~l~~W~~g~~~~~d~------~~GG~--~~~~-~G----~~~g~v~ev~p~~r-   82 (158)
T 3ni8_A           18 GMSFEITEEYYVPPEVLFNAFTDA-YTLTRLSRGSLAEVDL------KVGGK--FSLF-SG----SILGEFTEITKPHK-   82 (158)
T ss_dssp             CCCEEEEEEESSCHHHHHHHHHCH-HHHHHHTTTSCCEECC------STTCE--EEET-TT----TEEEEEEEEETTTE-
T ss_pred             CceEEEEEEECCCHHHHHHHhcCH-HHHHhhcCCCccEEEc------cCCCE--EEEe-cC----CEEEEEEEEeCCcE-
Confidence            357889999999999999999974 6789999732222332      23322  3444 33    34567777876544 


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCch-HH-HHHHHHH-HHHHHHHHH
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE-SK-VLEMMID-IVKNIDAYI  154 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~-~~-~~~~~~~-~~k~ie~yL  154 (183)
                      +.|+---.+... . ..-..++++.|. + +++|.++.+-.-.+..+...... .+ ..+.... ++..|.+||
T Consensus        83 lv~tw~~~~~~~-~-~~s~vt~~l~~~-~-~~~T~ltl~~~g~~~~~~~~~~~~~~~~~~GW~~~~L~~Lk~~L  152 (158)
T 3ni8_A           83 IVEKWKFRDWNE-C-DYSTVTVEFISV-K-ENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVIL  152 (158)
T ss_dssp             EEEEEEETTSCS-S-CCEEEEEEEEEE-E-TTEEEEEEEEECCCSSCTTCCCCHHHHHHHHHHHTHHHHHHHTS
T ss_pred             EEEEEEecCCCC-C-CcEEEEEEEEec-C-CCCEEEEEEEEccCchhhhccchhHHHHHhChhHHHHHHHHHHh
Confidence            444432122111 1 123568888884 2 56788877665222221111111 11 3344455 577777776

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=97.79  E-value=8.6e-05  Score=58.25  Aligned_cols=121  Identities=9%  Similarity=-0.016  Sum_probs=76.5

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT   84 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~   84 (183)
                      .++..++.|++|+++||+++.|. ..+++|++..       +++ -.+|..-.+.+. .       .-++.++++ .+++
T Consensus        21 ~~i~~~r~i~Appe~Vw~alTdp-e~l~~W~~p~-------~~d-~~~Gg~~~~~~~-~-------~g~v~e~~p-p~rl   82 (181)
T 4fpw_A           21 RSIIIRQRYDAPVDEVWSACTDP-NRINRWFIEP-------KGD-LREGGNFALQGN-A-------SGDILRCEP-PRRL   82 (181)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCH-HHHHHHSCCE-------ESC-CSTTCEEEESSS-C-------EEECCEEET-TTEE
T ss_pred             ceEEEEEEECCCHHHHHHHHcCh-HHHhhccCCC-------ccC-CCCCCEEEEEec-C-------CEEEEEEcC-CcEE
Confidence            57889999999999999999974 6789998742       355 355554333322 1       236666765 4566


Q ss_pred             EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH-HHHHHHHHHHHHHHHHhhC
Q 030045           85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK-VLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus        85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~-~~~~~~~~~k~ie~yLl~~  157 (183)
                      .|+...++.   +  ....++++.|.   ++||.++++.....  +    .... .......++..|.+||-..
T Consensus        83 ~~tw~~~~~---~--~s~vt~~l~~~---~~gT~Ltl~~~~~~--~----e~~~~~~~GW~~~L~~L~~~L~G~  142 (181)
T 4fpw_A           83 TISWVYEGK---P--DSEVELRLSEE---GDGTLLELEHATTS--E----QMLVEVGVGWEMALDFLGMFIRGD  142 (181)
T ss_dssp             EEEEBCTTS---C--CEEEEEEEEEE---TTEEEEEEEEEESC--H----HHHHHHHHHHHHHHHHHHHHC---
T ss_pred             EEEEEcCCC---C--cEEEEEEEEEC---CCcEEEEEEEEcCC--H----HHHHHHHHhHHHHHHHHHHHhCCC
Confidence            777654332   2  34678889896   67898887766422  1    1112 4445567788888888443

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=97.77  E-value=4.5e-05  Score=56.69  Aligned_cols=126  Identities=13%  Similarity=0.063  Sum_probs=74.0

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      ..+++.++.|+||+++||+++.|. ..+++|.+.. ...++      .+|..  +.+. . |.   +.-++.++++. ++
T Consensus        10 ~~~i~~~~~i~ap~e~Vw~altdp-~~~~~W~~~~-~~~d~------~~Gg~--~~~~-~-G~---~~g~v~e~~p~-~~   73 (145)
T 1x53_A           10 TCKITLKETFLTSPEELYRVFTTQ-ELVQAFTHAP-ATLEA------DRGGK--FHMV-D-GN---VSGEFTDLVPE-KH   73 (145)
T ss_dssp             EEEEEEEEEESSCHHHHHHHTTCH-HHHHHHSCSC-CBCCC------STTCC--CBBT-T-TT---EECCEEEEETT-TE
T ss_pred             ccEEEEEEEECCCHHHHHHHhCCH-HHHHHhcCCC-ceEEC------CCCCE--EEEE-C-Ce---eEEEEEEEeCC-CE
Confidence            367899999999999999999974 6789998632 22222      23322  3443 2 32   45567777654 45


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHH-HHHHHHHHHh
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMID-IVKNIDAYII  155 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~-~~k~ie~yLl  155 (183)
                      +.|+---.+... . .....++++.|.   +++|.++++....+..+    ... ..+.... ++..|.+||-
T Consensus        74 l~~~~~~~~~~~-~-~~~~v~~~l~~~---~~gT~l~~~~~~~~~~~----~~~-~~~Gw~~~~l~~L~~~le  136 (145)
T 1x53_A           74 IVMKWRFKSWPE-G-HFATITLTFIDK---NGETELCMEGRGIPAPE----EER-TRQGWQRYYFEGIKQTFG  136 (145)
T ss_dssp             EEEEEEETTSCT-T-CCEEEEEECCBC---SSCEEEEEEEEEEEHHH----HHH-HHHTTHHHHHHHHHHHTC
T ss_pred             EEEEEecCCCCC-C-CcEEEEEEEEEC---CCCEEEEEEEECCCHHH----HHH-HHhchhHHHHHHHHHHHh
Confidence            566543332211 1 124567888885   66899888854333211    111 3333454 5777777764

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=97.62  E-value=0.0078  Score=46.27  Aligned_cols=141  Identities=14%  Similarity=0.118  Sum_probs=85.4

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC--CCc-ceEEEEEEeecCC-
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA--GNP-QIVKELIEVVDDE-   80 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g--g~~-~~~kErl~~iD~~-   80 (183)
                      -.+..+..|++||+++|+++.|. ...|+|.| .+.++++++-+ +. -.|-.+.+. ..  ... ..+-.+-...|.+ 
T Consensus        27 ~~~k~~~~v~~s~~~v~~~l~D~-~~~~~W~~-~~~~~~vle~~-~~-~~i~y~~~~-~p~p~~~RD~v~~~~~~~~~~g  101 (189)
T 3qsz_A           27 REFRGEVRLKAAADDVVKVLRDA-NAFRQWMP-DVAASELLKAT-DT-EQYHYLDNS-APWPVSNRDGVYHFTYEKAGDG  101 (189)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCG-GGGGGTST-TEEEEEEEEEC-SS-EEEEEEEEC-CSSSCCCEEEEEEEEEEECTTS
T ss_pred             EEEEEEEEEECCHHHHHHHHHhH-HHhhhHHH-hcCEEEEEeec-CC-ceEEEEEee-cCCCcCCcceEEEEEEEECCCC
Confidence            35778899999999999999876 57899999 68999988754 22 233344443 22  111 2333322222333 


Q ss_pred             ceEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHH
Q 030045           81 NYITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAY  153 (183)
Q Consensus        81 ~~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~y  153 (183)
                      ...+.++. +-+..+     .....+.+.+.+.|  + +++|.+++....++.+.. |.-.. . ....+..+++.+.++
T Consensus       102 ~~~i~~~~-~~~~~P~~~~~VR~~~~~~~~~i~p--~-~~~t~vt~~~~~dp~G~i-P~~lvn~~~~~~~~~~l~~L~k~  176 (189)
T 3qsz_A          102 AITVRVEA-VPDYLPLRKGKVRIPRAKGQWTLVP--D-ADGVDVTYQMHASPGGSI-PSWLANQTVVETPFGTLKALRSH  176 (189)
T ss_dssp             CEEEEEEE-CTTSSCCCTTSEECCCEEEEEEEEE--C-SSSEEEEEEEEECSCSSS-CHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             eEEEEEEc-CCCccCCCCCeEEeeEeeEEEEEEE--C-CCeEEEEEEEEeCCCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333 111111     12456778888989  3 678999999999887532 32222 2 455556777777766


Q ss_pred             Hh
Q 030045          154 II  155 (183)
Q Consensus       154 Ll  155 (183)
                      +.
T Consensus       177 ~~  178 (189)
T 3qsz_A          177 LR  178 (189)
T ss_dssp             HT
T ss_pred             hh
Confidence            64

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=97.61  E-value=0.0041  Score=48.68  Aligned_cols=145  Identities=13%  Similarity=0.077  Sum_probs=89.7

Q ss_pred             EEEEEEEEc-CCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc---ceEEEE-EEeecCC
Q 030045            6 ELEAVIEVK-ASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP---QIVKEL-IEVVDDE   80 (183)
Q Consensus         6 ~~~~ei~i~-apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~---~~~kEr-l~~iD~~   80 (183)
                      .+..+..|+ +|++++++++.|. ...++|.| .+..+++++-+ |  ..|..+.+. ...+.   .++-.| ...++++
T Consensus        53 ~~k~~~~i~~~~~~~v~~~l~d~-~~r~~Wd~-~~~~~~vle~~-~--~~i~~~~~~-~p~p~~~RD~v~~~~~~~~~~~  126 (214)
T 1ln1_A           53 EYKVFGVLEDCSPTLLADIYMDS-DYRKQWDQ-YVKELYEQECN-G--ETVVYWEVK-YPFPMSNRDYVYLRQRRDLDME  126 (214)
T ss_dssp             EEEEEEEETTSCHHHHHHHHHCH-HHHHHHCT-TEEEEEEEEET-T--EEEEEEEEC-CCTTSCCEEEEEEEEEEEECST
T ss_pred             EEEEEEEECCCCHHHHHHHHcCH-HHHHHHHH-HHhhEEEeccC-C--CEEEEEEEE-cCCCCCCceEEEEEEEEecccC
Confidence            567888995 9999999999975 57899999 68888888765 3  456666655 22222   122222 2234444


Q ss_pred             ceE---EEEEEEeccccc--cc---eEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHH
Q 030045           81 NYI---TIFKLIEGNVLE--ML---YKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNI  150 (183)
Q Consensus        81 ~~~---~~y~viEG~~l~--~~---~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~i  150 (183)
                      ...   +...-++-+-.+  .+   ...+.+.+.+.|. + +++|.+++....++.+. .|.... . ....+..+++.+
T Consensus       127 g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~-~-~~~t~v~~~~~~Dp~G~-iP~~l~n~~~~~~~~~~l~~l  203 (214)
T 1ln1_A          127 GRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESD-G-KKGSKVFMYYFDNPGGQ-IPSWLINWAAKNGVPNFLKDM  203 (214)
T ss_dssp             TCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEEC-S-SSSEEEEEEEEECCSSC-CCHHHHHHHHHTHHHHHHHHH
T ss_pred             CCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecC-C-CCceEEEEEEEECCCCc-ccHHHHHHHHHHHhHHHHHHH
Confidence            322   212222221111  01   3457778888896 3 67899999999888853 333222 2 455567888888


Q ss_pred             HHHHhhChh
Q 030045          151 DAYIIQHEE  159 (183)
Q Consensus       151 e~yLl~~~~  159 (183)
                      ..++..-++
T Consensus       204 ~k~~~~y~~  212 (214)
T 1ln1_A          204 ARACQNYLK  212 (214)
T ss_dssp             HHHHHTC--
T ss_pred             HHHHHhccc
Confidence            888875543

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=97.58  E-value=0.0002  Score=63.91  Aligned_cols=110  Identities=13%  Similarity=0.085  Sum_probs=82.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCC-CCCccEEEEEEeecCCCcceEEEEE--EeecCCce
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEW-GKPGAVICWTFTRYAGNPQIVKELI--EVVDDENY   82 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~-g~~GsiR~~~~~~~gg~~~~~kErl--~~iD~~~~   82 (183)
                      +++.++.|++|++.||+.+.+. ..+++|.| ....++++.+.+ -.+|++. +.+.  ++  ..+.-|+  ..+|+. +
T Consensus         2 ~~~~~~~i~~p~~~v~~~~~~~-~~~~~~~p-~~~~~~~~~~~~~~~~G~~~-~~~~--~~--~~w~~~~~~t~~~~~-~   73 (516)
T 3oh8_A            2 SLTTSHFIPFPREMVWDWHTRK-GAVARLTP-PFIPLNPITQAERLADGTTI-FSLP--AG--LKWVARHDLSGFLNG-S   73 (516)
T ss_dssp             CEEEEEEESSCHHHHHHHHHST-THHHHHSC-TTSSCEECSCCSCSSSCEEE-EECS--TT--CEEEEEECGGGCBTT-T
T ss_pred             eEEEEEEccCCHHHHHHHhcCc-chHHHhCC-CCCceEEecCCCCCcCCeEE-EecC--CC--cEEEEEEccccccCC-C
Confidence            4788999999999999999976 56799999 578888875432 2688887 7765  33  3555666  766554 4


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEec
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQ  128 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~  128 (183)
                      .+......|++.  -|.++.-+..|.+.   ++||+++..++|...
T Consensus        74 ~F~d~~~~gp~~--~~~~w~h~h~f~~~---~~gt~~~d~~~~~~p  114 (516)
T 3oh8_A           74 RFTDVCLTAPVK--ALANWRHVHNFVDQ---DGGTLITDSVSTRLP  114 (516)
T ss_dssp             EEEEECCSCSSG--GGSSCEEEEEEEEE---TTEEEEEEEEECSSC
T ss_pred             eEEEEeccCccc--ceeeeEEEEEEEEc---CCCcEEEEEEEeeCc
Confidence            677788877742  26788888899987   567999999998643

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=97.43  E-value=0.004  Score=49.20  Aligned_cols=120  Identities=8%  Similarity=-0.012  Sum_probs=75.0

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT   84 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~   84 (183)
                      .++..+..+++|+++||+++-+- ..+.+|++.    +   ++| -.+|..-.+.+.        ..-++.++++.. ++
T Consensus        32 ~~l~i~R~f~Ap~e~VW~AlTdp-e~l~~W~~~----~---~~d-~r~GG~~~~~~~--------~~g~v~ev~pp~-rL   93 (192)
T 2luz_A           32 RSIIIRQRYDAPVDEVWSACTDP-NRINRWFIE----P---KGD-LREGGNFALQGN--------ASGDILRCEPPR-RL   93 (192)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCH-HHHTTTSCC----E---EEC-CSTTSEEEETTS--------EEEEEEEEETTT-EE
T ss_pred             eEEEEEEEeCCCHHHHHHHHcCH-HHHheeeCC----C---ccc-CccCcEEEeecc--------ccceEEEEecCe-eE
Confidence            46788889999999999999964 678999974    1   344 244443222222        223567776654 55


Q ss_pred             EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhhC
Q 030045           85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus        85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl~~  157 (183)
                      .|+--..+.   +  .-..++++.|.   ++||.++.+-..       .+++. . .......++..+.+||-..
T Consensus        94 ~~tw~~~~~---~--~~~vt~~L~~~---g~gT~Ltl~h~~-------~~~~~~~~~~~GW~~~Ld~L~~~L~g~  153 (192)
T 2luz_A           94 TISWVYEGK---P--DSEVELRLSEE---GDGTLLELEHAT-------TSEQMLVEVGVGWEMALDFLGMFIRGD  153 (192)
T ss_dssp             EEEEEESSS---C--EEEEEEEEEEE---TTEEEEEEEEEE-------SCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeecCC---C--CceEEEEEEEc---CCcEEEEEEEEC-------CCHHHHHHHhccHHHHHHHHHHHhCCC
Confidence            666433221   1  23568888897   678888766542       12222 2 3444577888899998743

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.18  E-value=0.0096  Score=44.63  Aligned_cols=99  Identities=11%  Similarity=0.120  Sum_probs=61.8

Q ss_pred             CcceEEEEEEEEcCCH-HHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCC
Q 030045            2 SLAGELEAVIEVKASA-DKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDE   80 (183)
Q Consensus         2 ~~~~~~~~ei~i~apa-~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~   80 (183)
                      +...+++.|+.|+||+ ++||+++.. +..|..|..+.+.    ..|.        ..+|. -+++ ....-+|..+++.
T Consensus         1 m~k~~i~~e~~i~A~~~~~VW~~ISt-PegL~~Wfad~v~----~~g~--------~~~F~-w~~~-~~~~~~v~~~~~~   65 (136)
T 2lio_A            1 MKKEKIHLEYLLNATSKNILWSAIST-PTGLEDWFADKVV----SDDK--------TVTFC-WGKT-EQRQAGIVAIRAY   65 (136)
T ss_dssp             CCCEEEEEEEEECTTSCTHHHHGGGS-HHHHTTTSSSEEE----EETT--------EEEEE-SSSS-SEEEEEEEEEETT
T ss_pred             CCCCcEEEEEEecCChHHHHHHHhCC-hhhhhcccCCCCc----ccCc--------eEEEE-eCCC-CcEeEEEEEEcCC
Confidence            0788999999999999 999999995 4678899986544    2343        22333 2222 3567777777665


Q ss_pred             ceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEE
Q 030045           81 NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFT  122 (183)
Q Consensus        81 ~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~  122 (183)
                      + .++|+=..-+     ..++...|++.+... .+++.++.+
T Consensus        66 ~-~i~FrW~~~~-----~~~~~~e~~l~~~~~-t~~~~L~vt  100 (136)
T 2lio_A           66 S-FIRFHWLDDE-----NERDYFEIKMSYNEL-TGDYVLEIT  100 (136)
T ss_dssp             T-EEEEEESSSS-----SSSCEEEEEEEECTT-TSCEEEEEE
T ss_pred             C-EEEEEccCCC-----CCceEEEEEEEecCC-CCcEEEEEe
Confidence            4 5677765322     112334555544300 246666655

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=96.52  E-value=0.0043  Score=46.63  Aligned_cols=134  Identities=13%  Similarity=0.035  Sum_probs=71.6

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCce------eeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeec
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSV------QSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVD   78 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v------~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD   78 (183)
                      ..+..++.++||+++||+++-+   .+.+|++..+      ..+++. -- |  |.. ....  ++|.. ...=++.+++
T Consensus         4 ~~i~~~r~~~Ap~e~Vw~A~Td---~l~~W~~p~~~~~~~~~~~~~d-r~-G--G~~-~~~~--~~G~~-~~~g~v~ev~   72 (155)
T 1zxf_A            4 PFVRHSVTVKADRKTAFKTFLE---GFPEWWPNNFRTTKVGAPLGVD-KK-G--GRW-YEID--EQGEE-HTFGLIRKVD   72 (155)
T ss_dssp             SCEEEEEEESSHHHHHHHHHTT---CSSSSSSGGGSTTTTCSSCEEE-TT-T--TEE-ECCC--TTTSC-CCCEEEEEEE
T ss_pred             ceEEEEEEEeCCHHHHHHHHHh---hHHhhcCCCccccCCCceEEEE-CC-C--CEE-EEEC--CCCCe-EeEEEEEEEC
Confidence            4678999999999999999997   2678875333      234443 21 2  223 2222  23321 1123667777


Q ss_pred             CCceEEEEEE-EeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCc-hH-HHH----HHHHHHHHHHH
Q 030045           79 DENYITIFKL-IEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDL-ES-KVL----EMMIDIVKNID  151 (183)
Q Consensus        79 ~~~~~~~y~v-iEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p-~~-~~~----~~~~~~~k~ie  151 (183)
                      +.. ++.|+- .+++....+-.....++++.|. + +|+|+++.+-..  ...  ..+ .. ...    .....++..++
T Consensus        73 pp~-rl~~tw~~~~~~~~~~~~~s~vt~~l~~~-~-~g~T~ltl~~~~--~~~--~~~~~~~~~~~~~~~GW~~~l~~L~  145 (155)
T 1zxf_A           73 EPD-TLVIGWRLNGFGRIDPDNSSEFTVTFVAD-G-QKKTRVDVEHTH--FDR--MGTKHAKRVRNGMDKGWPTILQSFQ  145 (155)
T ss_dssp             TTT-EEEEECCCSSSSSCCCSSCCCEEEEEEEE-T-TTEEEEEEEECS--STT--SCHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred             CCC-EEEEEEecCCCCCCCCCCcEEEEEEEEEC-C-CCcEEEEEEEec--ccc--cccchhHHHHHHHHhhHHHHHHHHH
Confidence            654 455652 2332100011124568888897 2 334877766542  111  112 11 122    23467788888


Q ss_pred             HHHhh
Q 030045          152 AYIIQ  156 (183)
Q Consensus       152 ~yLl~  156 (183)
                      +||.+
T Consensus       146 ~~l~~  150 (155)
T 1zxf_A          146 DKIDE  150 (155)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88743

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=95.97  E-value=0.079  Score=40.68  Aligned_cols=104  Identities=11%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             EEEEEEEEcCC---------HHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEe
Q 030045            6 ELEAVIEVKAS---------ADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEV   76 (183)
Q Consensus         6 ~~~~ei~i~ap---------a~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~   76 (183)
                      ++++.+.||-|         .+++|+-+......--.++| .+.+|++++..  ...-.|.++|.  ++   .++|++..
T Consensus         2 ~f~htvpIN~p~~p~~p~LTr~QlW~GL~~kar~p~~Fvp-~i~~c~Vlse~--~~~~~R~l~fg--~~---~i~e~vtl   73 (157)
T 2ffs_A            2 QFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRAREPQYFVV-GLERFEILVDD--GDRLHRRLYLP--GL---VVEDEVVL   73 (157)
T ss_dssp             CEEEEEECCCCCC---CCCCHHHHHHHHHHHHHCGGGTCT-TCCEEEEEEEC--SSEEEEEEEET--TE---EEEEEEEE
T ss_pred             ceeEEEecCCCCCCCCCccCHHHHHHHHHHHhcChhhccc-ccCeEEEEecC--CCeEEEEEEEC--CC---ccceEEEE
Confidence            35677777765         36899988855444446678 79999999764  23778999997  33   78899875


Q ss_pred             ecCCceEEEEEEEec-cccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEec
Q 030045           77 VDDENYITIFKLIEG-NVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQ  128 (183)
Q Consensus        77 iD~~~~~~~y~viEG-~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~  128 (183)
                      .  ...++.|.+-.- ..   .=.+...+|+. |.   + | -.-.++.|+..
T Consensus        74 ~--~~~~v~f~~~~t~~~---~gs~ltn~Iee-~~---~-g-~L~lrF~ye~~  115 (157)
T 2ffs_A           74 K--APDSAHYSIKPSAEV---AGGSLDMTIEE-PE---P-G-SLFVRFAYCTR  115 (157)
T ss_dssp             E--TTTEEEEEECCCSSS---BEEEEEEEEEE-EE---T-T-EEEEEEEEEEE
T ss_pred             c--CCcEEEEEcccccCC---CCceEEEEEee-CC---C-C-cEEEEEEEEcc
Confidence            3  344578888651 22   12244444444 32   3 3 34556777754

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=95.95  E-value=0.33  Score=38.12  Aligned_cols=146  Identities=6%  Similarity=0.015  Sum_probs=81.3

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCcc-EEEEEEeec--CCC---cceEEEEEEeecC
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGA-VICWTFTRY--AGN---PQIVKELIEVVDD   79 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs-iR~~~~~~~--gg~---~~~~kErl~~iD~   79 (183)
                      .+..+..+++||+++|+++.+.....++|-| .+..+++++--.+  .+ |-..... .  ..+   ...+--|-..-++
T Consensus        56 ~~k~~~~v~~~~~~v~~~l~~d~~~r~~Wd~-~~~~~~vle~~~~--~t~I~y~~~~-~~~~~~v~~RDfv~~r~~~~~~  131 (221)
T 3p0l_A           56 VFRLEVVVDQPMERLYEELVERMEAMGEWNP-NVKEIKVLQKIGK--DTFITHELAA-EAAGNLVGPRDFVSVRCAKRRG  131 (221)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTGGGTTTSCT-TCSEEEEEEECSS--SEEEEEEEEC-C---CCSCCEEEEEEEEEEECS
T ss_pred             EEEEEEEEcCCHHHHHHHHHhccchhhhcCc-chheEEEEEecCC--CeEEEEEeec-cccCCccCCceEEEEEEEEEcC
Confidence            4567778899999999998533356899999 6899988875311  22 2222222 1  111   1222222222233


Q ss_pred             CceEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCC--CeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHH
Q 030045           80 ENYITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEG--GSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNI  150 (183)
Q Consensus        80 ~~~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~g--gs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~i  150 (183)
                      ....+...-++-+..+     .....+.+-+.+.|. + ++  +|.++|....++.|. .|.... . .......+++.+
T Consensus       132 ~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~-~-~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~L  208 (221)
T 3p0l_A          132 STCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPL-A-GSPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFANHL  208 (221)
T ss_dssp             SCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEE-T-TEEEEEEEEEEECEECCSS-CCHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEEC-C-CCCCcEEEEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHH
Confidence            3333332223322221     112344567788886 2 44  699999999888764 343322 2 345567778888


Q ss_pred             HHHHhhCh
Q 030045          151 DAYIIQHE  158 (183)
Q Consensus       151 e~yLl~~~  158 (183)
                      .+++...+
T Consensus       209 r~~~~~~~  216 (221)
T 3p0l_A          209 RKRLESHP  216 (221)
T ss_dssp             HHHTC---
T ss_pred             HHHHhhch
Confidence            88876444

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=95.70  E-value=0.57  Score=36.85  Aligned_cols=145  Identities=9%  Similarity=0.011  Sum_probs=80.4

Q ss_pred             EEEEEEEcCCHHHHH-HHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeec--CCCc---ceEEEEEEeecCC
Q 030045            7 LEAVIEVKASADKVH-EVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY--AGNP---QIVKELIEVVDDE   80 (183)
Q Consensus         7 ~~~ei~i~apa~~vw-~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~--gg~~---~~~kErl~~iD~~   80 (183)
                      +..+..+++||+++| .++.|. ...++|-| .+..+++++--.+. -.|-..... +  ..+.   ..+--|-...++.
T Consensus        68 ~k~~~~v~~~~~~v~~~~~~d~-~~r~~Wd~-~~~~~~vle~~~~~-t~I~~~~~~-p~~~~~~~~RDfv~~r~~~~~~~  143 (229)
T 1em2_A           68 FILKTFLPCPAELVYQEVILQP-ERMVLWNK-TVTACQILQRVEDN-TLISYDVSA-GAAGGVVSPRDFVNVRRIERRRD  143 (229)
T ss_dssp             EEEEEEESSCHHHHHHHTTTCH-HHHTTTCT-TEEEEEEEEEETTT-EEEEEEEEC-CBTTTTBCCEEEEEEEEEEECSS
T ss_pred             EEEEEEecCCHHHHHHHHHhCc-cchhhccc-ccceEEEEEecCCC-eEEEEEEec-CcCCCCcCCCeeEEEEEEEEcCC
Confidence            456677899999999 666654 56899999 68888888753111 123222222 2  1221   2222222223444


Q ss_pred             ceEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHH
Q 030045           81 NYITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAY  153 (183)
Q Consensus        81 ~~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~y  153 (183)
                      ...+...=++-+..+     .....+.+-+.+.|.++++++|.++|....++.+. .|.... . ....+..+++.+.++
T Consensus       144 ~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~l~n~~~~~~~~~~~~~Lr~~  222 (229)
T 1em2_A          144 RYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LPRYLIHQSLAATMFEFAFHLRQR  222 (229)
T ss_dssp             EEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            443333333333222     12334456677888522135699999998888774 343322 2 444556777777777


Q ss_pred             Hhh
Q 030045          154 IIQ  156 (183)
Q Consensus       154 Ll~  156 (183)
                      +.+
T Consensus       223 ~~~  225 (229)
T 1em2_A          223 ISE  225 (229)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            644

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=93.96  E-value=1.8  Score=33.92  Aligned_cols=148  Identities=8%  Similarity=-0.039  Sum_probs=79.1

Q ss_pred             EEEEEEEEcCCHHHHHHHH--hcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeec-CCCc---ceEEEEEEeecC
Q 030045            6 ELEAVIEVKASADKVHEVF--SCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY-AGNP---QIVKELIEVVDD   79 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~--~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~-gg~~---~~~kErl~~iD~   79 (183)
                      .+..+..+++|++++++++  .|. ...++|-+ .+..+++++-- .+...|-....... ..+.   ..+--|-...++
T Consensus        68 ~~k~~~~v~~~~~~v~~~l~~~d~-~~r~~Wd~-~~~~~~vle~i-~~~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~  144 (231)
T 2r55_A           68 LYRGEGIVYGTLEEVWDCVKPAVG-GLRVKWDE-NVTGFEIIQSI-TDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYE  144 (231)
T ss_dssp             EEEEEEEESSCHHHHHHHHCC--C-CSHHHHCT-TCSEEEEEEEC-SSSEEEEEEECCCBTTTTBCCEEEEEEEEEEECT
T ss_pred             EEEEEEEECCCHHHHHHHHHhhCc-chhhhhcc-ccceeEEEEEc-CCCEEEEEEEeccccCCccCCCeEEEEEEEEEcC
Confidence            3567778899999999999  654 57899999 68888887653 12222322111101 1111   223222222333


Q ss_pred             Cc-eEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHH
Q 030045           80 EN-YITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNID  151 (183)
Q Consensus        80 ~~-~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie  151 (183)
                      ++ ..+...=++-+-.+     .....+.+-+.+.|.++++++|.++|....++.+. .|.... . ....+..+++.+.
T Consensus       145 ~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~Lr  223 (231)
T 2r55_A          145 DGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LPQNVVDSFFPRSMTRFYANLQ  223 (231)
T ss_dssp             TSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-ccHHHHHHHHhHhHHHHHHHHH
Confidence            33 33333333332221     11223345566777411135799999999888764 343222 2 3445567778887


Q ss_pred             HHHhhC
Q 030045          152 AYIIQH  157 (183)
Q Consensus       152 ~yLl~~  157 (183)
                      .++.+-
T Consensus       224 ~~~~~~  229 (231)
T 2r55_A          224 KAVKQF  229 (231)
T ss_dssp             HHHHGG
T ss_pred             HHHHHh
Confidence            777543

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=93.40  E-value=2.2  Score=33.34  Aligned_cols=144  Identities=10%  Similarity=-0.052  Sum_probs=76.5

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC-C----CcceEEEEEEeecCC
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA-G----NPQIVKELIEVVDDE   80 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g-g----~~~~~kErl~~iD~~   80 (183)
                      .+..+.++++|++++|+.+.|. ...++|-+ .+..+++++--.+. -.|-...+. .. .    +...+--|-..-+++
T Consensus        68 ~~k~~~~v~~~~~~v~~~l~d~-~~r~~Wd~-~~~~~~vle~id~~-~~I~y~~~~-~~~~~~v~~RDfv~~r~~~~~~~  143 (224)
T 1jss_A           68 LYKAQGVMDDVVNNVIDHIRPG-PWRLDWDR-LMTSLDVLEHFEEN-CCVMRYTTA-GQLLNIISPREFVDFSYTVGYEE  143 (224)
T ss_dssp             EEEEEEEESSCHHHHHHHHSSS-TTHHHHCS-SEEEEEEEEECSTT-EEEEEEEEC-CBTTTTBCCEEEEEEEEEEEETT
T ss_pred             EEEEEEEEeCCHHHHHHHHhCc-cccccccc-ceeeEEEEEEcCCC-eEEEEEEcc-cccCCCCCCCeEEEEEEEEEcCC
Confidence            3567888999999999999975 44599999 68899988752111 123332332 11 1    112222222222333


Q ss_pred             ceEEEEEEEecccc-c--cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 030045           81 NYITIFKLIEGNVL-E--MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYI  154 (183)
Q Consensus        81 ~~~~~y~viEG~~l-~--~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yL  154 (183)
                      +..+...-++-+-. +  .....+.+.+.+.|.+++.+.|.++|.+.-++.|.. |..-. . +......+++.+.+++
T Consensus       144 ~~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i-P~~lvn~~~~~~~~~~~~~Lr~~~  221 (224)
T 1jss_A          144 GLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMI-PQSAVDTAMASTLANFYSDLRKGL  221 (224)
T ss_dssp             EEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSCC-CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCCc-cHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33332222221111 1  122344566778886110136999999988887743 32222 1 2333455555555554

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=91.91  E-value=1.1  Score=36.57  Aligned_cols=148  Identities=12%  Similarity=0.124  Sum_probs=79.5

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCC--c-ceEEEEEEe--ecCC
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGN--P-QIVKELIEV--VDDE   80 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~--~-~~~kErl~~--iD~~   80 (183)
                      .+..+..+++||+.+|+.+.|. ...|+|.+ .++++++++--.+. -.|-.+.....+++  . ..+--|-..  .++.
T Consensus        89 ~~k~~~~v~~~~~~v~~~L~D~-~~R~~WD~-~~~~~~vle~id~~-~ivY~~~~p~~~~~v~~RDFV~lr~~r~~~~~G  165 (258)
T 3fo5_A           89 SFHMEMVVHVDAAQAFLLLSDL-RQRPEWDK-HYRSVELVQQVDED-DAIYHVTSPALGGHTKPQDFVILASRRKPCDNG  165 (258)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCG-GGGGGTCT-TCCEEEEEEEEETT-EEEEEEEECCCTTCSSCEEEEEEEEEECCSSTT
T ss_pred             EEEEEEEEeCCHHHHHHHHhCc-hhHhHhhh-hccEEEEEEEcCCC-eEEEEEecCCccCCCCCCEEEEEEEEEeccCCC
Confidence            4667888999999999999965 67899999 68888888641011 11222222201111  1 233333332  2222


Q ss_pred             -ceEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHH---HHHHHHHHHHHH
Q 030045           81 -NYITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKV---LEMMIDIVKNID  151 (183)
Q Consensus        81 -~~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~---~~~~~~~~k~ie  151 (183)
                       ...+...-++-+-.+     ..-..+.+.+-+.|. + +++|.|.+...-++  +..|.-..+.   -......++.+.
T Consensus       166 ~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~-~-~~~t~VtY~~q~dp--G~lP~~~~n~~g~s~~~~~t~~~~~  241 (258)
T 3fo5_A          166 DPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWRE-G-DQLTKVSYYNQATP--GVLNYVTTNVAGLSSEFYTTFKACE  241 (258)
T ss_dssp             CCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEE-E-TTEEEEEEEESCCG--GGHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             CEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEEC-C-CCCEEEEEEEeeCC--CCCCceEEeccccchHHHHHHHHHH
Confidence             245554444433222     112355678888897 3 66788887665444  1111100111   122245577888


Q ss_pred             HHHhhChhh
Q 030045          152 AYIIQHEEA  160 (183)
Q Consensus       152 ~yLl~~~~~  160 (183)
                      +||..+.+.
T Consensus       242 ~fl~~~~~~  250 (258)
T 3fo5_A          242 QFLLDNRND  250 (258)
T ss_dssp             HHHHHTC--
T ss_pred             HHHHhcccc
Confidence            888776553

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=91.76  E-value=4.1  Score=32.36  Aligned_cols=142  Identities=10%  Similarity=0.121  Sum_probs=76.0

Q ss_pred             EEEEEE-cCCHHHHHHHHhcCCCccccccCCceeeEEEEcC-CCCCCccEEEEEEeecCCCc---ceEEEE-EEee---c
Q 030045            8 EAVIEV-KASADKVHEVFSCRPHIVTSISPQSVQSCELIEG-EWGKPGAVICWTFTRYAGNP---QIVKEL-IEVV---D   78 (183)
Q Consensus         8 ~~ei~i-~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eG-d~g~~GsiR~~~~~~~gg~~---~~~kEr-l~~i---D   78 (183)
                      .....+ +++++.+++++.|. ...++|-| .++.+++++- +  .-+.|..+.+. .-.+.   ..+--| ....   +
T Consensus        76 K~~~~~~~~~~~~v~~~l~d~-~~r~~Wd~-~~~~~~vle~i~--~~~~i~y~~~~-~p~p~s~RDfV~~r~~~~~~~~~  150 (255)
T 2e3n_A           76 KATHAVKGVTGHEVCNYFWNV-DVRNDWET-TIENFHVVETLA--DNAIIIYQTHK-RVWPASQRDVLYLSVIRKIPALT  150 (255)
T ss_dssp             EEEEEEETCCHHHHHHHHHCG-GGHHHHCC-SEEEEEEEEEEE--TTEEEEEEEEC-CCTTSCCEEEEEEEEEEEECCSS
T ss_pred             EEEEEEcCCCHHHHHHHHhCc-chHhhhhh-hcceeEEEEEcC--CCCEEEEEEee-cCCCcCCceeEEEEEEEeccccc
Confidence            344555 49999999999986 57899999 6899998876 3  12356666655 22222   222222 1122   1


Q ss_pred             CC--ce--EEEEEEEeccccc--cce---E---EEEEEEEEEeeeCC------CCCeEEEEEEEEEecCCCCCCchH-H-
Q 030045           79 DE--NY--ITIFKLIEGNVLE--MLY---K---SFCSVAKVTQKDDH------EGGSLVRFTYKYEKQNENVPDLES-K-  138 (183)
Q Consensus        79 ~~--~~--~~~y~viEG~~l~--~~~---~---sy~~t~~v~p~~~~------~ggs~v~W~~~ye~~~~~~~~p~~-~-  138 (183)
                      +.  +.  .+.+++ +-+-.+  .+|   .   ++.+..-+.|..++      +++|.++|....++.+. .|.-.. . 
T Consensus       151 ~~g~~~~~i~~~Sv-~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~  228 (255)
T 2e3n_A          151 ENDPETWIVCNFSV-DHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGW-APASVLRAV  228 (255)
T ss_dssp             TTSCCEEEEEEEEC-CCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSSC-CCHHHHHHH
T ss_pred             cCCCCEEEEEEecc-CCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCCc-cCHHHHHHH
Confidence            21  12  223333 222111  011   1   22233334442010      25799999988888763 233222 2 


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 030045          139 VLEMMIDIVKNIDAYIIQ  156 (183)
Q Consensus       139 ~~~~~~~~~k~ie~yLl~  156 (183)
                      ....+..+++.+..|+..
T Consensus       229 ~~~~~~~~l~~L~k~v~~  246 (255)
T 2e3n_A          229 AKREYPKFLKRFTSYVQE  246 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHH
Confidence            455557788888888863

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=88.07  E-value=8.5  Score=30.48  Aligned_cols=141  Identities=11%  Similarity=0.023  Sum_probs=81.4

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCC---cceEEEEEE--eecCC
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGN---PQIVKELIE--VVDDE   80 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~---~~~~kErl~--~iD~~   80 (183)
                      .+..+.+|++++++++..+-..   .++|-| .+..+++++-- +.--.|-...+. .-.+   ...+--|--  .+++.
T Consensus        76 ~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~-~~~~~~vle~i-d~~~~I~y~~~~-~p~p~~~RDfv~~r~~r~~~~~g  149 (237)
T 2pso_A           76 LWKASVEVEAPPSVVLNRVLRE---RHLWDE-DFVQWKVVETL-DRQTEIYQYVLN-SMAPHPSRDFVVLRTWKTDLPKG  149 (237)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHC---GGGTCT-TBCCCEEEEEE-ETTEEEEEEEEC-CSSSCCCEEEEEEEEEESCCGGG
T ss_pred             EEEEEEEEcCChHHHHHHHHhh---hhhHHh-hhceEEEEEEc-CCCcEEEEEEec-CCCCcCCeEEEEEEEEEEECCCC
Confidence            4678899999999987544422   689999 68888887652 111124444443 2211   123333322  23455


Q ss_pred             ceEEEEEEEeccccc----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH-HHHHHHHHHHHHHHHHh
Q 030045           81 NYITIFKLIEGNVLE----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK-VLEMMIDIVKNIDAYII  155 (183)
Q Consensus        81 ~~~~~y~viEG~~l~----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~-~~~~~~~~~k~ie~yLl  155 (183)
                      ...+...-++-+-.+    .....+.+.+.+.|. + +++|.++|....++.+. .|.--.. +...+...++.|-.++.
T Consensus       150 ~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~-~-~~~t~vt~~~~~Dp~G~-iP~~ln~~~~~~~~~~l~~LR~~~~  226 (237)
T 2pso_A          150 MCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPC-G-SGKSRLTHICRIDLKGH-SPEWYSKGFGHLCAAEVARIRNSFQ  226 (237)
T ss_dssp             CEEEEEEECCCTTCCCCSSEECCEEEEEEEEEEC-S-TTCEEEEEEEEECCSSS-CTTTTTTHHHHHHHHHHHHHHHTTS
T ss_pred             EEEEEEEcccCCCCCCCCcEEEEEeccEEEEEEC-C-CCCEEEEEEEEeCCCCC-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655555443221    123456778888996 4 67899999999998864 3432221 44444555666655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	2e-26
d1vjha_	120	d.129.3.1 (A:) Hypothetical protein At1G24000 {Tha	4e-25
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	6e-25
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	8e-25
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	1e-24
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	2e-22
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	2e-18

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 96.5 bits (240), Expect = 2e-26
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 6/154 (3%)

Query: 6   ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAG 65
             E       +  ++++        +   + +++QS E +EG  G PG +   T     G
Sbjct: 4   TFEDESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEGN-GGPGTIKKLTLIE-GG 61

Query: 66  NPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKY 125
             + V   IE VD+ N    + ++ G  L    +      K+ +  +   GS+ + T K 
Sbjct: 62  ETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANG--GSIGKVTIKI 119

Query: 126 EKQNENVPDLES--KVLEMMIDIVKNIDAYIIQH 157
           E + +  P+ E             K I+ Y+  H
Sbjct: 120 ETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAH 153

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.8 bits (228), Expect = 4e-25
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 37/155 (23%)

Query: 2   SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
           +L G L    +VK  ADK    F                  E     + K G        
Sbjct: 2   TLKGALSVKFDVKCPADKFFSAFV-----------------EDTNRPFEKNG-------- 36

Query: 62  RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
                    K  IE VD        ++    + +  +K+      VT     + GS V +
Sbjct: 37  ---------KTEIEAVDLVKKTMTIQMSGSEIQKY-FKTLKGSIAVTPIGVGD-GSHVVW 85

Query: 122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ 156
           T+ +EK ++++ D    +++  +   K +D  I+ 
Sbjct: 86  TFHFEKVHKDIDD-PHSIIDESVKYFKKLDEAILN 119

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score = 92.6 bits (230), Expect = 6e-25
 Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 7/156 (4%)

Query: 8   EAVIEVKASADKVHEVFSCRPHIVTS-ISPQSVQSCELIEGEWGKPGAVICWTFTRYAGN 66
           E        A ++ + F      +   ++PQ++ S E IEG  G PG +    F      
Sbjct: 6   ETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEG-NGGPGTIKKINFPE-GFP 63

Query: 67  PQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYE 126
            + VK+ ++ VD  N+   + +IEG  +    +   +  K+    D  GG +++ + KY 
Sbjct: 64  FKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPD--GGCVLKISNKYH 121

Query: 127 KQNENVPDLES--KVLEMMIDIVKNIDAYIIQHEEA 160
            +  +    E      EM   +++ +++Y++ H +A
Sbjct: 122 TKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDA 157

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 92.3 bits (229), Expect = 8e-25
 Identities = 26/152 (17%), Positives = 61/152 (40%), Gaps = 5/152 (3%)

Query: 7   LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGN 66
            E       +  K+++  +     +     + +QS E++EG  G PG +       + G+
Sbjct: 5   FENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGN-GGPGTIKKIIAI-HDGH 62

Query: 67  PQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYE 126
              V   ++ +D+ N    + +I G  L+   +     +K+    D   GS+ +   K+ 
Sbjct: 63  TSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDG--GSIGKINVKFH 120

Query: 127 KQNENVPDLESK-VLEMMIDIVKNIDAYIIQH 157
            + + + +          + + K I+ Y++ H
Sbjct: 121 TKGDVLSETVRDQAKFKGLGLFKAIEGYVLAH 152

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score = 91.9 bits (228), Expect = 1e-24
 Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 7/156 (4%)

Query: 8   EAVIEVKASADKVHEVFSCRPH-IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGN 66
           E+    +    ++ + F      +V  I+PQ+++  E++EG+ G PG +   TF      
Sbjct: 6   ESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGG-PGTIKKITFGE-GSQ 63

Query: 67  PQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYE 126
              VK  I+ +D ENY   + LIEG+ L    +      K+        GS+++ T  Y 
Sbjct: 64  YGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSG--GSIIKSTSHYH 121

Query: 127 KQNENVPDLES--KVLEMMIDIVKNIDAYIIQHEEA 160
            +       E      E   ++ K I+ Y+  H +A
Sbjct: 122 TKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDA 157

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score = 86.1 bits (213), Expect = 2e-22
 Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 8/153 (5%)

Query: 8   EAVIEVKASADKVHEVFSCRPH-IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGN 66
              +    SA+K+ + F      ++   +P + +S E I+G  G PG +   T     G 
Sbjct: 6   VLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKG-DGGPGTLKIITLPD-GGP 62

Query: 67  PQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYE 126
              +   I+ V+ E     + +I+G++L    +S  +   +    D   GS+ + T  + 
Sbjct: 63  ITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADG--GSICKTTAIFH 120

Query: 127 KQNENVPDLES--KVLEMMIDIVKNIDAYIIQH 157
            + + V   E+     E    + K ++AY+I +
Sbjct: 121 TKGDAVVPEENIKYANEQNTALFKALEAYLIAN 153

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score = 75.4 bits (185), Expect = 2e-18
 Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 4/127 (3%)

Query: 8   EAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP 67
                   +  K+++  +     +       +QS EL+    G  G +   T        
Sbjct: 6   RDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELV-EGNGGVGTIKKITANE-GDKT 63

Query: 68  QIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK 127
             V + ++ +D+ N    + ++ G  L    +      KV        GS+ + T K+  
Sbjct: 64  SFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGG--GSISKVTLKFHT 121

Query: 128 QNENVPD 134
           + +    
Sbjct: 122 KGDAPLS 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1fm4a_	159	Major tree pollen allergen {European white birch (	100.0
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	100.0
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	100.0
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	100.0
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.97
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.91
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.57
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.54
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.42
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.26
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	98.99
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	98.92
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	98.86
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	98.72
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	98.51
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	98.45
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	98.29
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	98.26
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	98.07
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	97.87
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	97.46
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	97.22
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	97.22
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	97.21
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	96.8
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	96.79
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	96.51
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	93.46

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=100.00  E-value=2.2e-45  Score=286.28  Aligned_cols=155  Identities=23%  Similarity=0.383  Sum_probs=142.8

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHh-cCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            4 AGELEAVIEVKASADKVHEVFS-CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~-d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      +.+++.|+++++||+|+|++|. |+.+++|+|+|+.|++|++++|| |++||||.|+|. .+++..++||||+++|+++|
T Consensus         2 v~~~e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGd-g~~GsIr~~~~~-~~~~~~~~Kerve~iD~~~~   79 (159)
T d1fm4a_           2 VFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGN-GGPGTIKKINFP-EGFPFKYVKDRVDEVDHTNF   79 (159)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECS-SSTTCEEEEECC-TTSSSSEEEEEEEEEETTTT
T ss_pred             ceEEEEEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCC-CCCCCEEEEEec-CCCCceEEEEEEEEEccccc
Confidence            5688999999999999999975 66557899999999999999999 799999999999 88888999999999999999


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhhChhh
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYIIQHEEA  160 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl~~~~~  160 (183)
                      +++|++||||.|...|++|++++++.|. + +|||+++|+++|+++++..++|+. + .++.+.+|+|+||+||++||++
T Consensus        80 ~~~y~viEGd~l~~~~~s~~~~~k~~~~-~-~gg~v~kwt~eYe~~~~~~~~~e~~k~~ke~~~~~~K~iE~YLlanp~~  157 (159)
T d1fm4a_          80 KYNYSVIEGGPVGDTLEKISNEIKIVAT-P-DGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDA  157 (159)
T ss_dssp             EEEEEEEEBTTBTTTEEEEEEEEEEEEC-T-TSCEEEEEEEEEEESTTCCCCTTTTHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             EEEEEEEeccccccceEEEEEEEEEecC-C-CCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhChhh
Confidence            9999999999876589999999999997 4 789999999999999988776765 4 7899999999999999999999


Q ss_pred             hh
Q 030045          161 RV  162 (183)
Q Consensus       161 ~~  162 (183)
                      ||
T Consensus       158 y~  159 (159)
T d1fm4a_         158 YN  159 (159)
T ss_dssp             TC
T ss_pred             cC
Confidence            96

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=100.00  E-value=3.6e-45  Score=285.13  Aligned_cols=155  Identities=26%  Similarity=0.397  Sum_probs=143.0

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHh-cCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            4 AGELEAVIEVKASADKVHEVFS-CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~-d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      +.+++.|+++++||+|+|+++. |+.+++|+++|+.|++|++++|| |++||||.|+|. +|++..++||||+++|+++|
T Consensus         2 v~~~~~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGd-g~~GsIr~~~~~-~~~~~~~~KErie~iD~~~~   79 (159)
T d1e09a_           2 VFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGD-GGPGTIKKITFG-EGSQYGYVKHKIDSIDKENY   79 (159)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESS-SSTTCEEEEEEC-CSSSCEEEEEEEEEEETTTT
T ss_pred             ceEEEEEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCC-CCcCcEEEEEEc-CCCCcEEEEEEEEEEccccc
Confidence            5789999999999999999975 66567899999999999999999 689999999999 89988999999999999999


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhhChhh
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYIIQHEEA  160 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl~~~~~  160 (183)
                      +++|++||||+|...|++|..++++.|. + ++||+++|+++|+++++..++|+. + +++++..|+|+||+||++||++
T Consensus        80 ~~~y~viEGd~l~~~~~s~~~~~~~~~~-~-~~g~vvkwt~eYe~~~~~~~~~e~~~~~~e~~~~~~K~iEayLlanp~~  157 (159)
T d1e09a_          80 SYSYTLIEGDALGDTLEKISYETKLVAS-P-SGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDA  157 (159)
T ss_dssp             EEEEEECCCTTTGGGEEEEEEEEEECCC-T-TSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             EEEEEEEecccccccEEEEEEEEEEccC-C-CCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhChhh
Confidence            9999999999885589999999999997 4 778999999999999998777776 4 7899999999999999999999


Q ss_pred             hh
Q 030045          161 RV  162 (183)
Q Consensus       161 ~~  162 (183)
                      ||
T Consensus       158 y~  159 (159)
T d1e09a_         158 YN  159 (159)
T ss_dssp             CC
T ss_pred             cC
Confidence            96

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=1.9e-44  Score=280.39  Aligned_cols=153  Identities=23%  Similarity=0.303  Sum_probs=139.5

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHh-cCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            4 AGELEAVIEVKASADKVHEVFS-CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~-d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      +.+++.|+++++||+|+|+++. |..+++|++ |+.|++|+++||| |++||||.|+|. .|++.+++||||+++|++|+
T Consensus         2 v~t~~~E~~~~v~a~k~fka~~~d~~~l~pk~-p~~i~s~e~~eGd-G~~GsIr~~~~~-~g~~~~~~Kerie~vD~e~~   78 (157)
T d1xdfa1           2 VFTFEDESTSTIAPARLYKALVKDADAIIPKA-VEAIQSIETVEGN-GGPGTIKKLTLI-EGGETKYVLHKIEAVDEANL   78 (157)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHHSHHHHHHHH-CTTEEEEEEEESS-SSTTCEEEEEEE-ETTEEEEEEEEEEEEEGGGT
T ss_pred             ceEEEEEEeccCCHHHHHHHHhhchhhccccc-hhheecceeecCC-CCCCcEEEEEEc-CCCccEEEEEEEEEEechhc
Confidence            5789999999999999999986 665567887 5689999999999 899999999999 89988999999999999999


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhhChhh
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYIIQHEEA  160 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl~~~~~  160 (183)
                      +++|++|||++|+..|++|..++++.|. + +|||+++|+++|+++++..++|+. + +++++.+|+|+||+||++||| 
T Consensus        79 ~~~y~viEGd~l~~~~~s~~~~~k~~~~-~-~ggsv~k~t~eYe~~~~~~~~~e~ik~~~e~~~~~~K~iEaYLlanpd-  155 (157)
T d1xdfa1          79 RYNYSIVGGVGLPDTIEKISFETKLVEG-A-NGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE-  155 (157)
T ss_dssp             EEEEEEESSTTSCTTEEEEEEEEEEEEC-T-TSSEEEEEEEEEEESSSSCCCHHHHHHHHHHHHTTTHHHHHHHHTSGG-
T ss_pred             EEEEEEEecccccccEEEEEEEEEEEcC-C-CCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCC-
Confidence            9999999999875589999999999997 4 789999999999999998777776 4 788899999999999999999 


Q ss_pred             hh
Q 030045          161 RV  162 (183)
Q Consensus       161 ~~  162 (183)
                      ||
T Consensus       156 y~  157 (157)
T d1xdfa1         156 YN  157 (157)
T ss_dssp             GC
T ss_pred             CC
Confidence            75

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=1.7e-43  Score=274.44  Aligned_cols=152  Identities=18%  Similarity=0.331  Sum_probs=137.9

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHh-cCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            4 AGELEAVIEVKASADKVHEVFS-CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~-d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      +.+++.|+++++||+|+|+++. |+.+++||++| .|++|+++||| |++||||.|+|. .|++.+++||||+++|++||
T Consensus         2 v~t~~~E~~~~v~a~klfka~~~d~~~l~pk~~~-~i~s~e~~eGd-Gg~GsIk~~~~~-~~~~~~~~Kerie~iD~en~   78 (155)
T d1icxa_           2 IFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIE-PIQSVEIVEGN-GGPGTIKKIIAI-HDGHTSFVLHKLDAIDEANL   78 (155)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHST-TEEEEEEEESS-SSTTCEEEEEEE-SSSSEEEEEEEEEEEEGGGT
T ss_pred             ceEEEEeEEecCCHHHHhhhheeccchhchhhhh-heeeeeEecCC-CccceEEEEEec-cCCceEEEEEEEEEEccccc
Confidence            5689999999999999999987 66557899999 59999999999 899999999999 89989999999999999999


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH-HHHHHHHHHHHHHHHHhhChhh
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK-VLEMMIDIVKNIDAYIIQHEEA  160 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~-~~~~~~~~~k~ie~yLl~~~~~  160 (183)
                      +++|++||||+|...|++|..++++.|. + ++||+++|+++|++.++..++++.+ +++++.+|||+||+||++|||+
T Consensus        79 ~~~y~viEGd~l~~~~~~~~~~~k~~~~-~-~~g~i~k~t~eYe~~g~~~~e~~~~~~ke~~~~~fK~iE~YLlanPd~  155 (155)
T d1icxa_          79 TYNYSIIGGEGLDESLEKISYESKILPG-P-DGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAHPDY  155 (155)
T ss_dssp             EEEEEEEEETTSCTTEEEEEEEEEEEEC-G-GGCEEEEEEEEEEESSSSCCHHHHTTHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             EEEEEEEecccccccEEEEEEEEEEecC-C-CCCeEEEEEEEEEECCCCCChhhHHHHHHHHHHHHHHHHHHHhhCcCC
Confidence            9999999999876589999999999997 4 7789999999999998864444434 8999999999999999999985

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=100.00  E-value=5.3e-43  Score=271.22  Aligned_cols=149  Identities=21%  Similarity=0.335  Sum_probs=137.1

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHh-cCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            4 AGELEAVIEVKASADKVHEVFS-CRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~-d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      +.+++.|+++++||+|+|++|. |.++++||++|+.|++|++ +|| |++||||.|+|. .+++..++|||++++|++||
T Consensus         2 v~t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~svev-eGd-G~~GsIr~~~~~-~~~~~~~~Kerve~iD~~~~   78 (153)
T d2bk0a1           2 VQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGD-GGPGTLKIITLP-DGGPITTMTLRIDGVNKEAL   78 (153)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEEE-ESS-SSTTCEEEEECC-TTSSCCEEEEEEEEEETTTT
T ss_pred             ceEEEEEEeccCCHHHHHHHHhhcccccccccccceeeEEEE-ECC-CCCCeEEEEEEe-cCccceeeEEEEEEEecCcc
Confidence            5789999999999999999986 6545789999999999995 899 899999999999 89999999999999999999


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHhhC
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl~~  157 (183)
                      +++|++||||.|...|++|+.++++.|. + +|||+++|+++|+++++..++|+. + +++.+.+|||+||+||++|
T Consensus        79 ~~~y~viEGd~l~~~y~s~~~~~~~~~~-~-~ggsv~k~t~eYe~~~~~~~~~e~~k~~~e~~~~~~K~iE~YLlan  153 (153)
T d2bk0a1          79 TFDYSVIDGDILLGFIESIENHVVLVPT-A-DGGSICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN  153 (153)
T ss_dssp             EEEEEEEESGGGTTTEEEEEEEEEEEEC-T-TSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEecccccccEEEEEEEEEEecC-C-CCCeEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999775489999999999997 4 788999999999999998888876 4 7888999999999999998

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=100.00  E-value=7.4e-39  Score=246.26  Aligned_cols=144  Identities=17%  Similarity=0.230  Sum_probs=130.0

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      +.+++.|+++++||+|+|+++..+.+.+|+++|+.|++|++++|| |++||||.|+|. +|++..++||||+++|+++|+
T Consensus         2 v~~~~~E~~~~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGd-g~~GsIr~~~~~-~g~~~~~~kErl~~iD~~~~~   79 (147)
T d1txca1           2 VFVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGN-GGVGTIKKITAN-EGDKTSFVLQKVDAIDEANLG   79 (147)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESS-SSTTCEEEEEEE-ETTEEEEEEEEEEEEEGGGTE
T ss_pred             ceEEEEEEeccCCHHHHHHhhhcccccCccccccccccceeecCC-CCcceEEEEEEc-CCCcceEEEEEEEEEccCCcE
Confidence            578999999999999999988844477888899999999999999 789999999999 888888999999999999999


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHH
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNID  151 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie  151 (183)
                      ++|++||||+|...|++|.+++++.|. + +|||+|+|+++|+++++..++++. + .++.+.+|||+||
T Consensus        80 ~~y~iiEGd~l~~~~~s~~~~~~~~~~-~-~ggs~vkw~~~y~~~~~~~~~ee~~k~~k~~~~~~~KavE  147 (147)
T d1txca1          80 YDYSIVGGTGLPESLEKLSFETKVVAG-S-GGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIE  147 (147)
T ss_dssp             EEEEEEESTTSCTTEEEEEEEEEEEEC-S-TTCEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEccCccccceEEEEEEEEEecC-C-CCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHhhhheecC
Confidence            999999999886689999999999997 4 778999999999999887655554 4 7888999999997

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=2.4e-30  Score=192.21  Aligned_cols=118  Identities=24%  Similarity=0.353  Sum_probs=104.5

Q ss_pred             CcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCc
Q 030045            2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDEN   81 (183)
Q Consensus         2 ~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~   81 (183)
                      ++.|+++.+++|++||+++|++|++.                 ++|+|.                 +..||||+++|++|
T Consensus         2 ~l~gkl~~eveik~~a~kf~~~~~~~-----------------~~~~~~-----------------~~~KerVe~vD~en   47 (120)
T d1vjha_           2 TLKGALSVKFDVKCPADKFFSAFVED-----------------TNRPFE-----------------KNGKTEIEAVDLVK   47 (120)
T ss_dssp             CSEEEEEEEEEESSCHHHHHHHHHHH-----------------TTSCSS-----------------TTCEEEEEEEETTT
T ss_pred             CcceEEEEEEEecCCHHHHHHHhhhc-----------------cCCCCC-----------------cccEEEEEEEcCCC
Confidence            57899999999999999999999642                 234542                 24599999999999


Q ss_pred             eEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhh
Q 030045           82 YITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ  156 (183)
Q Consensus        82 ~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~  156 (183)
                      ++++|++||||+|+ .|++|+.+++|+|.++ ++||+++|+++|++.++..|+|+. +++++..++|+||+|||+
T Consensus        48 ~sity~vieGdvl~-~yksf~~~i~~~p~~~-g~gsi~kwt~eYek~~~~~p~p~~-~~e~~~~~~K~id~yLL~  119 (120)
T d1vjha_          48 KTMTIQMSGSEIQK-YFKTLKGSIAVTPIGV-GDGSHVVWTFHFEKVHKDIDDPHS-IIDESVKYFKKLDEAILN  119 (120)
T ss_dssp             TEEEEEEECTTGGG-TEEEEEEEEEEEECSS-SSCEEEEEEEEEEESSTTSCCSHH-HHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEeecccc-ceeEEEEEEEEEecCC-CCceEEEEEEEEEeCCCCCCCHHH-HHHHHHHHHHHHHHHHhc
Confidence            99999999999987 8999999999999832 348999999999999999899988 999999999999999986

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.91  E-value=2.4e-23  Score=155.53  Aligned_cols=132  Identities=17%  Similarity=0.242  Sum_probs=104.9

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT   84 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~   84 (183)
                      .+.+.+++|+|||++||++++|| ..+|+|+| .+++|+..+|     |++|.+++. .|+   .++|||+.+|+.+|++
T Consensus         2 ~~~~~si~I~A~pe~VW~~v~df-~~~~~W~p-~v~~~~~~~~-----G~~R~~~~~-~g~---~~~E~l~~~d~~~~~~   70 (138)
T d3cnwa1           2 AHTTTSMEIFGSPEQVWQLIGGF-NSLPDWLP-YIPSSKLTEG-----GRVRHLANP-DGD---TIIERLEVFNDKERYY   70 (138)
T ss_dssp             EEEEEEEEESSCHHHHHHHHCCT-TCGGGTCT-TCSEEEEEGG-----GTEEEEECT-TCC---EEEEEEEEEETTTTEE
T ss_pred             CcEEEEEEEeCCHHHHHHHHhCc-cchHHHhc-ccceeEeecC-----ceeEEEEec-CCc---eeEEEEEEEeCCCcEE
Confidence            45889999999999999999998 56799999 6999987532     789999987 554   8999999999999999


Q ss_pred             EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH--H-HHHHHHHHHHHHHHHH
Q 030045           85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES--K-VLEMMIDIVKNIDAYI  154 (183)
Q Consensus        85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~--~-~~~~~~~~~k~ie~yL  154 (183)
                      +|++++|++   ++++|.+++++.|..+ +++|.|+|+++|++.+.   .++.  + ...+....++.+++.+
T Consensus        71 ~y~~~~~~~---p~~~~~~~~~l~p~~~-g~~t~v~w~~~f~p~~~---~~~~~~~~~~~~~~~~l~~L~~~f  136 (138)
T d3cnwa1          71 TYSIMNAPF---PVTNYLSTIQVKEGTE-SNTSLVEWSGTFTPVEV---SDEEAINLFHGIYSDGLKALQQAF  136 (138)
T ss_dssp             EEEEEECSS---SEEEEEEEEEEEECSS-TTCEEEEEEEEEEESSS---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCC---cceeeEEEEEEEECCC-CCeEEEEEEEEEecCCC---CHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999987   7999999999999722 34699999999998642   2333  2 2233345555555544

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=1.7e-13  Score=100.55  Aligned_cols=111  Identities=22%  Similarity=0.172  Sum_probs=86.7

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      +++.++.|++|+++||+++.|+ ..+|+|+| .++++++++++  +.+....+++. ..+.......++. .++.++.+.
T Consensus         2 ~v~~~~~I~ap~~~V~~~l~D~-~~~~~w~p-~~~~~~il~~~--~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~i~   75 (146)
T d2d4ra1           2 EVRAERYIPAPPERVYRLAKDL-EGLKPYLK-EVESLEVVARE--GARTRSRWVAV-AMGKKVRWLEEEE-WDDENLRNR   75 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCH-HHHGGGCT-TEEEEEEEEEE--TTEEEEEEEEE-ETTEEEEEEEEEE-EETTTTEEE
T ss_pred             EEEEEEEECCCHHHHHHHHHCh-hhHHhhcc-ccEEEEEEEec--CCcceEEEEEE-eeeeeEEEEEEEE-EcCCCCEEE
Confidence            5789999999999999999998 57899999 69999998765  33444455554 3332334555544 578899999


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE  130 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~  130 (183)
                      |++..|++     ..|.+++++.|.   ++||.++|+++|+....
T Consensus        76 ~~~~~g~~-----~~~~g~w~l~~~---~~gT~v~~~~~~~~~~~  112 (146)
T d2d4ra1          76 FFSPEGDF-----DRYEGTWVFLPE---GEGTRVVLTLTYELTIP  112 (146)
T ss_dssp             EEEEEESC-----SEEEEEEEEEEC---SSSEEEEEEEEEECCCT
T ss_pred             EEEccCCc-----ceEEEEEEEEec---CCceEEEEEEEEEEcCc
Confidence            99998874     368899999997   66899999999997543

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.54  E-value=4.2e-13  Score=98.97  Aligned_cols=121  Identities=12%  Similarity=0.039  Sum_probs=88.4

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      .++++.+++|+|||++||+.+.|+ ..+|+|+| .+.+++++++++++.+....+... .++.......+ ...++..+.
T Consensus         2 ~~~~e~si~I~Ap~~~Vw~~l~D~-~~~~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~   77 (155)
T d2rera1           2 AARTDNSIVVNAPFELVWDVTNDI-EAWPELFS-EYAEAEILRQDGDGFDFRLKTRPD-ANGRVWEWVSH-RVPDKGSRT   77 (155)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHTCG-GGHHHHCS-SEEEEEEEECCSSCEEEEEEECCC-TTSCCCEEEEE-EEEEGGGTE
T ss_pred             CCEEEEEEEECCCHHHHHHHHHCh-hhHhhhhh-hceEEEEeecCCCceEEEEEEEEe-eeeeeEEEEEE-EEEcCCccE
Confidence            567899999999999999999987 67899999 688999887653333333333333 23322233333 446778888


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCch
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE  136 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~  136 (183)
                      +.|....++    +...+..++++.|.   ++||.|+|+.+|+..+.. +.+.
T Consensus        78 ~~~~~~~~~----~~~~~~~~w~~~~~---~~gT~v~~~~~~~~~~~~-~~~~  122 (155)
T d2rera1          78 VRAHRVETG----PFAYMNLHWTYRAV---AGGTEMRWVQEFDMKPGA-PFDN  122 (155)
T ss_dssp             EEEEESSCT----TEEEEEEEEEEEEE---TTEEEEEEEEEEEECTTC-SSCH
T ss_pred             EEEEeecCc----cceeeEEEEEEeec---CCccEEEEEEEEEECCCc-cccH
Confidence            888876555    46688999999997   678999999999988765 4444

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.42  E-value=7.8e-12  Score=90.45  Aligned_cols=105  Identities=10%  Similarity=0.025  Sum_probs=81.2

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI   85 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~   85 (183)
                      +++.++.|+|||++||+++.|. ..+|+|+| .+++++. +|+ .++|+...+++. .++   .+..++.++++. ++++
T Consensus         2 ~~s~si~I~Ap~e~Vw~~~~d~-~~~~~W~~-~~~~~~~-~~~-~~~G~~~~~~~~-~~~---~~~~~v~~~~p~-~~~~   72 (137)
T d2b79a1           2 KFSFELAVNTKKEDAWTYYSQV-NQWFVWEG-DLEQISL-EGE-FTTGQKGKMKME-DMP---ELAFTLVEVREN-QCFS   72 (137)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCG-GGGGGTST-TEEEEEE-SSS-SSTTCEEEEEET-TSC---CEEEEECCCBTT-TEEE
T ss_pred             ceEEEEEEcCCHHHHHHHHhhh-hhCccccC-cccceee-ccc-ccceEEEEEEEc-CCc---ceeeeeecccCC-cEEE
Confidence            5789999999999999999987 67899999 6999996 565 488999888876 343   466788888665 5677


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK  127 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~  127 (183)
                      |.... +     ...+....++.+. + +|+|.++|+.+|..
T Consensus        73 ~~~~~-~-----~~~~~~~~~~~~~-~-~g~t~vt~~~~~~g  106 (137)
T d2b79a1          73 DLTAT-P-----FGNVLFEHEILEN-P-DGTISLRHSVSLTD  106 (137)
T ss_dssp             EEEEE-T-----TEEEEEEEEEEEC-T-TSCEEEEEEEEECS
T ss_pred             EEecc-c-----ceeeeeEEEEccC-C-CCcEEEEEEEeccc
Confidence            76532 2     3355667778886 3 67799999999864

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.26  E-value=5e-11  Score=85.63  Aligned_cols=113  Identities=17%  Similarity=0.150  Sum_probs=73.2

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT   84 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~   84 (183)
                      =+++.+++|++||++||+++.|+ ..+|.|+| .+++++...+.   .+........ ...............++.....
T Consensus         3 ~k~e~si~I~ap~e~Vw~~l~D~-~~~~~w~p-~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   76 (147)
T d2ns9a1           3 VRYEGSFEVSKTPEEVFEFLTDP-KRFSRAFP-GFKSVEVEDGS---FTIELRLSLG-PLRGDARVRASFEDLEKPSKAT   76 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCH-HHHGGGST-TEEEEEEETTE---EEEEEEEESS-SSEEEEEEEEEEEEEETTTEEE
T ss_pred             EEEEEEEEEcCCHHHHHHHHhCH-hhhhhccc-chhheeecccc---cceeEEEEEE-EEeeEeeeeeeeeeecCCccee
Confidence            47899999999999999999987 67899999 58888864332   2222222222 1111112333334444444433


Q ss_pred             EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecC
Q 030045           85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQN  129 (183)
Q Consensus        85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~  129 (183)
                      .+.......   ...++..++++.|.   ++||.++|+.+++..+
T Consensus        77 ~~~~~~~~~---~~~~~~~~~~l~~~---~~gt~v~~~~~~~~~g  115 (147)
T d2ns9a1          77 VKGSGRGAG---STLDFTLRFAVEPS---GGGSRVSWVFEGNVGG  115 (147)
T ss_dssp             EEEEEECSS---EEEEEEEEEEEEEE---TTEEEEEEEEEEEEEE
T ss_pred             EEEeeeccc---cceeeEEEEEEEec---CCCcEEEEEEEEEeCc
Confidence            333322222   46678889999997   7789999999998864

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.99  E-value=5.3e-09  Score=76.56  Aligned_cols=102  Identities=15%  Similarity=0.057  Sum_probs=76.1

Q ss_pred             CCcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCC
Q 030045            1 MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDE   80 (183)
Q Consensus         1 m~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~   80 (183)
                      |....+.+.+|+|++|+++||.++.|+ ..+|+|+| .+.+++..+|+       +.+......|   .++-++.. |+.
T Consensus         1 ~p~~~~~~~~i~I~~p~~~v~~~~~d~-~~~p~w~~-~l~~~~~~~~~-------~~~~~~~~~G---~~~~~i~~-~~p   67 (133)
T d2qpva1           1 MPVMQSRIIHLSVEKPWAEVYDFAANP-GNMPRWAA-GLAGGLEADGE-------DWIAKGGPLG---EVRVNFAP-HNE   67 (133)
T ss_dssp             CCCCCEEEEEEEESSCHHHHHHHHHCG-GGGGGTCG-GGTTCCEEETT-------EEEEECSSSC---EEEEEECC-CCS
T ss_pred             CCcceEEEEEEEECCCHHHHHHHHhCh-hhcchhhh-ccceeEEecCC-------cEEEEecCCC---cEEEEEEE-cCC
Confidence            777888999999999999999999987 67899999 58887766553       2333331223   56777765 788


Q ss_pred             ceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEE
Q 030045           81 NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTY  123 (183)
Q Consensus        81 ~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~  123 (183)
                      ++.+.|+...|+.-     .-..+|++.|.   ++||.+.|+.
T Consensus        68 ~~~i~w~~~~~~~~-----~g~v~fr~~~~---g~gt~v~~~~  102 (133)
T d2qpva1          68 FGVIDHVVTLPDGL-----KVYNALRVTPN---GSGTEVSFTL  102 (133)
T ss_dssp             SCBCCEEEECTTSC-----EEEEEEEEEEE---TTEEEEEEEE
T ss_pred             CCEEEEEEecCCCC-----EEEEEEEEccC---CCeEEEEEEE
Confidence            99999999887631     33457888885   6678877765

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=98.92  E-value=2.4e-08  Score=72.17  Aligned_cols=113  Identities=13%  Similarity=0.056  Sum_probs=72.0

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc-ceEEEEEEeecCCceEEE
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITI   85 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~-~~~kErl~~iD~~~~~~~   85 (183)
                      .+.+++|++|+++||+++.|. ..+|+++| .+++++.++.+ ...+.++ +.+.  ..+. -..+.++...+...+. .
T Consensus         3 ~s~~~~i~~~~e~v~~~l~D~-~~~~~~~P-g~~~~~~~~~~-~~~~~~~-~~~g--~~~~~~~~~~~~~~~~~~~~~-~   75 (147)
T d2pcsa1           3 GNGSIELKGTVEEVWSKLMDP-SILSKCIM-GCKSLELIGED-KYKADLQ-IGIA--AVKGKYDAIIEVTDIKPPYHY-K   75 (147)
T ss_dssp             EEEEEEEESCHHHHHHHHTCH-HHHHHHST-TEEEEEEEETT-EEEEEEE-ECCG--GGCEEEEEEEEEEEEETTTEE-E
T ss_pred             CCceEEeCCCHHHHHHHHcCH-HHHHhhCc-chhhceecCCC-EEEEEEE-Eeec--ceeeeeEEEEEEeccCcccce-e
Confidence            567899999999999999986 78999999 58999988664 2222222 2222  1111 1244455556665553 2


Q ss_pred             EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045           86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE  130 (183)
Q Consensus        86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~  130 (183)
                      ....... .. ......+.+.+.+. + +++|.++|+++|+..+.
T Consensus        76 ~~~~~~~-~~-~~~~~~~~~~~~~~-~-~~~T~v~~~~~~~~~g~  116 (147)
T d2pcsa1          76 LLVNGEG-GP-GFVNAEGVIDLTPI-N-DECTQLTYTYSAEVGGK  116 (147)
T ss_dssp             EEEEEEE-TT-EEEEEEEEEEEEES-S-SSEEEEEEEEEEEEESG
T ss_pred             Eeecccc-cc-chhcceeEEeeecc-c-CCcEEEEEEEEEEECcH
Confidence            2222111 12 45566677777765 3 67899999999997543

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=98.86  E-value=1.6e-08  Score=74.48  Aligned_cols=112  Identities=9%  Similarity=0.054  Sum_probs=79.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC--CCcceEEEEEEeecCCceE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA--GNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g--g~~~~~kErl~~iD~~~~~   83 (183)
                      +...+-.+++||+++|+++.|+ ...|+|+| ..+++++++.....-|......+. .+  +.......+. ..+..++.
T Consensus         3 ~~~~~~vi~~~~e~vf~vV~Dv-e~Yp~FlP-~c~~~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~   78 (148)
T d1t17a_           3 RHVVTKVLPYTPDQLFELVGDV-DAYPKFVP-WITGMRTWNGRVDGAVSTVDAEAQ-VGFSFLREKFATRV-RRDKDARS   78 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHHTTT-TCCSSCCS-SCCCCCEEEEEEETTEEEEEEEEE-CSTTSSCCEEEEEE-EEETTTCE
T ss_pred             cceEEEEeCCCHHHHHHHHHHH-Hhhhhhcc-ccCccEEEecccccccceeeEEEE-EEeeeeEEEEEEEe-eecCCceE
Confidence            4556779999999999999998 67899999 688888876531233444444444 22  3223444443 35677777


Q ss_pred             EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecC
Q 030045           84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQN  129 (183)
Q Consensus        84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~  129 (183)
                      +.....+|.     ++...+.+++.|.   ++||.|+|.++|+...
T Consensus        79 ~~~~~~~g~-----f~~l~~~W~f~~~---~~~T~V~~~l~fe~~~  116 (148)
T d1t17a_          79 IDVSLLYGP-----FKRLNNGWRFMPE---GDATRVEFVIEFAFKS  116 (148)
T ss_dssp             EEEEESSTT-----SSCEEEEEEEEEE---TTEEEEEEEEEECCSC
T ss_pred             EEEeccCch-----hhhcccceeeccC---CCceEEEEEEEEEECC
Confidence            777666554     4577899999997   5689999999998754

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=98.72  E-value=9.2e-08  Score=71.01  Aligned_cols=143  Identities=15%  Similarity=0.064  Sum_probs=89.1

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      ...+..+.+|+||+++||+++.|. ..+++|++..--++...+.+ ..+|.-..+.+...+|....+.-++..+++.++ 
T Consensus        11 ~~~i~i~r~i~Ap~e~Vw~a~tdp-e~l~~W~~p~~~~~~~~~~d-~~~gg~~~~~~~~~~g~~~~~~g~v~~i~~~~r-   87 (163)
T d1xuva_          11 KQEIIITREFDAPRELVFKAFTDP-DLYTQWIGPRGFTTALKIFE-PKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPER-   87 (163)
T ss_dssp             CSEEEEEEEESSCHHHHHHHHHCH-HHHTTTCSSTTCEEEEEEEC-CSTTCEEEEEEECTTSCEEEEEEEEEEEETTTE-
T ss_pred             CceEEEEEEeCCCHHHHHHHHcCh-HHhhhccCCCCccceeeeee-ceeCceEEEEEEecCCCceEEEEEEEEecCCCE-
Confidence            467889999999999999999974 67899975333344455566 455555555554134444568888999988866 


Q ss_pred             EEEEEE-eccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH----HHHHHHHHHHHHHHHHhhC
Q 030045           84 TIFKLI-EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK----VLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus        84 ~~y~vi-EG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~----~~~~~~~~~k~ie~yLl~~  157 (183)
                      +.|+.- ++...  .-.....++++.+. + +|+++++++..|....    ..+..    ..+....++..|++||-+-
T Consensus        88 l~~tw~~~~~~~--~~~~~~v~~~~e~~-~-~g~t~~~~~~~~~~~~----~~~~~~~~g~~~GW~~~L~~L~~~le~~  158 (163)
T d1xuva_          88 IISTFEFEGLPE--KGHVILDTARFEAL-P-GDRTKLTSHSVFQTIE----DRDGMLQSGMEEGINDSYERLDELLEKM  158 (163)
T ss_dssp             EEEEEEETTSSS--SCCCEEEEEEEEEE-T-TTEEEEEEEEECSSHH----HHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeccCCCC--CCCcEEEEEEEEEe-C-CCcEEEEEEEcCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            566543 33222  12245678888887 3 5557777665542211    01110    2334467788888888543

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.51  E-value=6.3e-06  Score=59.28  Aligned_cols=138  Identities=11%  Similarity=0.065  Sum_probs=86.1

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEee-cCCCcceEEEEEEeecCCceEE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTR-YAGNPQIVKELIEVVDDENYIT   84 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~-~gg~~~~~kErl~~iD~~~~~~   84 (183)
                      ++..+..|+||+++||+++-+. ..+.+|++..--.+...+++ -.+|.--.+.+.. ++|....+.-++.++++.++ +
T Consensus         3 ti~~~r~i~ap~e~Vw~a~Tdp-~~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~~g~~~~~~g~v~~~~p~~~-i   79 (143)
T d1z94a1           3 TIRLHRVLSAPPERVYRAFLDP-LALAKWLPPEGFVCKVLEHD-ARVGGAYKMEFLAFASGQKHAFGGRYLELVPGER-I   79 (143)
T ss_dssp             CEEEEEEESSCHHHHHHHTTCH-HHHHHHSSCTTEEEEEEEEC-CSTTCEEEEEEEETTTCCEEEEEEEEEEEETTTE-E
T ss_pred             EEEEEEEECCCHHHHHHHhcCH-HHHhhhhCCCCccceeEeec-cccceeEEEEEeeCCCCcEEEEEEEEEEecCCeE-E
Confidence            5778889999999999999964 67889875333344445666 4667665555541 34444557778888987776 5


Q ss_pred             EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 030045           85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYII  155 (183)
Q Consensus        85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl  155 (183)
                      .|+-.-.+..  .-.....++++.+.   ++||.++.+.  ....+. ..... .......++..|.+||-
T Consensus        80 ~~t~~~~~~~--~~~~~~v~~~l~~~---~~gT~lt~~~--~~~~~~-~~~~~-~~~GW~~~l~~L~~~lE  141 (143)
T d1z94a1          80 RYTDRFDDAG--LPGDMITTITLAPL---SCGADLSIVQ--EGIPDA-IPPEN-CYLGWQQSLKQLAALVE  141 (143)
T ss_dssp             EEEEEESCCC-----CEEEEEEEEEE---TTEEEEEEEE--ECCCTT-SCHHH-HHHHHHHHHHHHHHHHS
T ss_pred             EEEEeccCCC--CCCcEEEEEEEEEc---CCCEEEEEEE--EcCCCh-hHHHH-HHHHHHHHHHHHHHHHc
Confidence            5664432221  11234568888897   6678776543  333322 12222 45555677778888773

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.45  E-value=6.2e-06  Score=60.87  Aligned_cols=143  Identities=15%  Similarity=0.138  Sum_probs=85.3

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT   84 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~   84 (183)
                      ..++.+..|+||+++||+++.|. ..+++|.+..--.+...+++ ..+|..-.+.+...++....+.-++.++++..+ +
T Consensus         7 ~~i~ier~i~Ap~e~Vw~a~tdp-e~l~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~~~~~~g~v~e~~p~~~-i   83 (164)
T d2il5a1           7 VEVEIEKLYKFSPELVYEAWTKK-DLLKQWFMTSARTNKEIEAD-VKEGGKYRIVDQQRNGKVNVIEGIYESLVMDEY-V   83 (164)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCH-HHHTTTSSSCTTTEEEEEEC-CSTTCEEEEEEECGGGCEEEEEEEEEEEETTTE-E
T ss_pred             EEEEEEEEECCCHHHHHHHHcCH-HHHhCcccCCCccceEEEee-cccCceEEEEEecCCcceEEEEEEEEEEcCCCE-E
Confidence            46788889999999999999974 67899875332233344556 466666556654223433457778888877654 4


Q ss_pred             EEEE-EeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH---------H-HHHHHHHHHHHHHHH
Q 030045           85 IFKL-IEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES---------K-VLEMMIDIVKNIDAY  153 (183)
Q Consensus        85 ~y~v-iEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~---------~-~~~~~~~~~k~ie~y  153 (183)
                      .|+. .++...  .  ....++.+.+. . +|||.++++.++.......-....         + .......++..+.+|
T Consensus        84 ~~t~~~~~~~~--~--~~~~~~~~~e~-~-~ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~  157 (164)
T d2il5a1          84 KMTIGMPGLSE--T--QDVIEVEFFER-E-TGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHV  157 (164)
T ss_dssp             EEEESCC--CC--C--CEEEEEEEEEC-S-SSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCC--C--ceEEEEEEEEc-C-CCCEEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4543 222221  1  12344555443 3 788999999988776543211111         1 123345667777777


Q ss_pred             Hhh
Q 030045          154 IIQ  156 (183)
Q Consensus       154 Ll~  156 (183)
                      |-+
T Consensus       158 lE~  160 (164)
T d2il5a1         158 IET  160 (164)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            743

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.29  E-value=1.8e-06  Score=63.96  Aligned_cols=145  Identities=13%  Similarity=0.079  Sum_probs=86.7

Q ss_pred             cceEEEEEEEEcCCHHHHHHHHhcCCCcccccc-CCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCc
Q 030045            3 LAGELEAVIEVKASADKVHEVFSCRPHIVTSIS-PQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDEN   81 (183)
Q Consensus         3 ~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~-P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~   81 (183)
                      ....+..+.+++||+++||+++-|- ..+.+|+ |... .+...++| -.+|....+.+...+|......-++.++++.+
T Consensus         3 ~~~~l~i~r~i~ap~e~Vw~a~tdp-e~~~~W~~p~~~-~~~~~~~d-~~~GG~~~~~~~~~~g~~~~~~g~v~ei~p~~   79 (165)
T d1xfsa_           3 AELDLMLKRELAVPVNLVWRGLTEP-ELLKKWFVPKPW-SISDCRVD-LRPGGEFYTVMQDPEGNKFPNSGCFLEVTDEK   79 (165)
T ss_dssp             TTTEEEEEEEESSCHHHHHHHHHCH-HHHTTTSSCTTC-EEEEEEEC-CSTTCEEEEEEECTTCCEEEEEEEEEEEETTT
T ss_pred             CCcEEEEEEEEcCCHHHHHHHHcCH-HHHhhcCCCCCc-cceeeccc-ceeCceEEEEEECCCCceeeEEEEEEEecCCc
Confidence            4567889999999999999999974 6789996 4333 33334566 35665555555413454445677888887765


Q ss_pred             eEEEEE--EEecccc---------ccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH--H--HHHHHHHH
Q 030045           82 YITIFK--LIEGNVL---------EMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES--K--VLEMMIDI  146 (183)
Q Consensus        82 ~~~~y~--viEG~~l---------~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~--~--~~~~~~~~  146 (183)
                      + +.|+  +-.+...         .........++++.+.   ++||.++++..+....+    ...  .  ..+....+
T Consensus        80 r-l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~---~~gT~lt~~~~~~~~~~----~~~~~~~g~~~GW~~~  151 (165)
T d1xfsa_          80 R-LIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPT---SSGTRYTACAMHNTPGQ----RKLHEEMGFHEGWGTT  151 (165)
T ss_dssp             E-EEEESSEEGGGEECCC-----------CCEEEEEEEEC---SSSEEEEEEEECSSHHH----HHHHHTTTHHHHHHHH
T ss_pred             E-EEEEEeecccccccccccccccCCCCccEEEEEEEEEc---CCcEEEEEEEEcCCHHH----HHHHHHHHHHHHHHHH
Confidence            4 4443  3211100         0012223568888886   67898887754322110    111  0  23445788


Q ss_pred             HHHHHHHHhhCh
Q 030045          147 VKNIDAYIIQHE  158 (183)
Q Consensus       147 ~k~ie~yLl~~~  158 (183)
                      +..|++||-+++
T Consensus       152 l~~L~~~le~~~  163 (165)
T d1xfsa_         152 ITQLEELLKQEK  163 (165)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcC
Confidence            899999997654

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.26  E-value=1.7e-05  Score=56.85  Aligned_cols=136  Identities=9%  Similarity=-0.069  Sum_probs=77.9

Q ss_pred             EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEE--cCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045            6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELI--EGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI   83 (183)
Q Consensus         6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~--eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~   83 (183)
                      .+..+..+++||++||+++-|- ..+.+|++..-..+...  ..+ -.+|--..+.+....|....++-++.++++.++.
T Consensus         2 el~i~r~i~a~~e~Vw~a~tdp-~~l~~W~~~~~~~~~~~~~~~~-~~~gg~~~~~~~~~~g~~~~~~g~v~~~~p~~rl   79 (143)
T d3elia1           2 DLRLEREFAVAPEALFAWVSDG-AKLLQWWGPEGLHVPADQHDLD-FTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQSV   79 (143)
T ss_dssp             EEEEEEEESSCHHHHHHHTTCH-HHHHHHCSSTTCBCCTTSBCCC-CSSSEEEEEEEECTTCCEEEEEEEEEEEETTTEE
T ss_pred             eEEEEEEECCCHHHHHHHhcCH-HHHhhhcCCCCceeeeeeEEEe-eccCccEEEEEECCCCcEEEEEEEEEEcCCCCEE
Confidence            4678889999999999999974 67788874221111111  122 2333333333331334444677789999888653


Q ss_pred             -EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 030045           84 -TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYI  154 (183)
Q Consensus        84 -~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yL  154 (183)
                       +++.....+..  .-..-..++++.|.   ++||.++++..  .    .+..+. . .......++..+++||
T Consensus        80 ~~t~~~~~~~~~--~~~~~~vt~~l~~~---~~gT~l~~~~~--~----~~~~~~~~~~~~GW~~~L~~L~~~l  142 (143)
T d3elia1          80 GFTWGWHDDDDR--RGAESHVMFIVEPC---AKGARLILDHR--E----LGDDEMSLRHEEGWTSSLRKLAAEL  142 (143)
T ss_dssp             EEEEEEECTTSC--EEEEEEEEEECCBC-----CEEEEEEEE--S----CSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeecCCCCC--CCCcEEEEEEEEEc---CCCEEEEEEEE--c----CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence             34444443321  12233567788886   66788766543  2    122332 2 5555677888888887

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=98.07  E-value=5.7e-05  Score=53.86  Aligned_cols=98  Identities=11%  Similarity=0.105  Sum_probs=66.1

Q ss_pred             CCcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCC
Q 030045            1 MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDE   80 (183)
Q Consensus         1 m~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~   80 (183)
                      |...-.++.++.|+||+++||+++.+. ..+.+|++..       +.+ ..+|..  +.+. .+.  ..+.-++.++++.
T Consensus         1 mt~~p~i~~~~~i~ap~e~Vw~alt~p-~~~~~W~~~~-------~~~-~~~g~~--~~~~-~~~--~~~~g~v~~~~~~   66 (138)
T d1xn5a_           1 MTRLPDIKKEVRFNAPIEKVWEAVSTS-EGLAFWFMEN-------DLK-AETGHH--FHLQ-SPF--GPSPCQVTDVERP   66 (138)
T ss_dssp             CCSCCCEEEEEEESSCHHHHHHHTTSH-HHHHTTSCCB-------CCC-SCTTCE--EEEE-CSS--CEEEEEEEEEETT
T ss_pred             CCCCCeEEEEEEECCCHHHHHHHHcCH-HHhceEccCC-------ccc-ccceee--EEec-CCc--cceeEEEEEEeCC
Confidence            666678999999999999999999975 6789999842       122 234443  3333 221  2456678888766


Q ss_pred             ceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEE
Q 030045           81 NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYK  124 (183)
Q Consensus        81 ~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~  124 (183)
                      . ++.|+.-.++        ...++++.|.   ++||.++++-.
T Consensus        67 ~-~l~~~~~~~~--------~~v~~~l~~~---~~gT~lt~~~~   98 (138)
T d1xn5a_          67 I-KLSFTWDTDG--------WSVTFHLKEE---ENGTIFTIVHS   98 (138)
T ss_dssp             T-EEEEEETTTT--------EEEEEEEEEC---SSSEEEEEEEE
T ss_pred             c-EEEEEecCCC--------eEEEEEEEEc---CCcEEEEEEEe
Confidence            5 5677752222        3567888896   77898887654

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.87  E-value=0.00028  Score=52.44  Aligned_cols=126  Identities=7%  Similarity=-0.024  Sum_probs=75.7

Q ss_pred             cceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce
Q 030045            3 LAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY   82 (183)
Q Consensus         3 ~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~   82 (183)
                      +...+..|..|++|+++||+++-+. ..+.+|+|. ....     + -.+|.--.+.+.  ++   ...-++.++++ ++
T Consensus        10 ~~~~f~~er~i~ap~e~Vw~AlTdp-e~l~~W~~~-~~~~-----d-~~~GG~~~~~~~--~~---~~~~~v~~~ep-p~   75 (160)
T d2nn5a1          10 QTIYFGTERAISASPQTIWRYLTET-DKLKQWFPE-LEIG-----E-LGVNGFWRFILP--DF---EETMPFTDYAE-EK   75 (160)
T ss_dssp             TEEEEEEEEEESSCHHHHHHHHHCH-HHHHHHCTT-EEEE-----E-CSTTCEEEEEET--TE---EEEEEEEEEET-TT
T ss_pred             CcEEEEEEEEecCCHHHHHHHHcCH-HHHHhhCCC-CCcc-----c-ccCCCeeEEEcC--CC---CcceEEEEEec-CC
Confidence            3456788999999999999999974 678999994 3322     3 123333344444  33   34557788874 55


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhC
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQH  157 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~~  157 (183)
                      ++.|+-  |..        ..++++.|. + +++|.+..+-..   .+............-..++..+.+||-..
T Consensus        76 rL~~tW--~~~--------~v~~eL~~~-~-~~~t~l~l~~~~---~~~~~~~~~~~~~GW~~~Ld~L~~~leg~  135 (160)
T d2nn5a1          76 YLGVTW--DTG--------IIYFDLKEQ-A-PHQTLLVFSESL---PENFTTPRHKDIAGWSIVLNRLKQVVETP  135 (160)
T ss_dssp             EEEEEE--TTE--------EEEEEEEEE-E-TTEEEEEEEEEE---CTTCSSCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEEe--cCc--------eEEEEEecC-C-CCeEEEEEEEec---CccccchhhhhHHHHHHHHHHHHHHHcCC
Confidence            667764  221        247788785 3 566766654432   22212222112334577888888888543

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=97.46  E-value=0.00047  Score=49.60  Aligned_cols=94  Identities=13%  Similarity=0.071  Sum_probs=59.1

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT   84 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~   84 (183)
                      ..+..++.|+||+++||+++.|. ..+.+|++..  .+     + -.+|..  ++|...++.   +.-++.++++. +++
T Consensus         8 ~~i~~~~~i~ap~e~Vw~alTdp-~~l~~W~~~~--~~-----~-~~~G~~--~~~~~~~g~---~~g~v~~~~p~-~~l   72 (143)
T d1xn6a_           8 NDIKQTIVFNASIQKVWSVVSTA-EGIASWFMPN--DF-----V-LEVGHE--FHVQSPFGP---SPCKVLEIDEP-NHL   72 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHTTSCS-HHHHTTSCCB--CC-----C-CCTTCE--ECBCCTTCC---CCEEEEEEETT-TEE
T ss_pred             CeEEEEEEECCCHHHHHHHhcCh-HHhceEeecc--Cc-----c-cccCce--EEEeccccc---eeEEEEEEeCC-cEE
Confidence            35889999999999999999974 6789998742  11     2 133332  344312342   33467778665 456


Q ss_pred             EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEE
Q 030045           85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTY  123 (183)
Q Consensus        85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~  123 (183)
                      .|+--.+        ....++++.|. + +|+|.++.+-
T Consensus        73 ~~tw~~~--------~~~v~~~l~~~-~-~G~T~l~l~h  101 (143)
T d1xn6a_          73 SFSWDTD--------GWVVSFDLKDL-G-DNKTEFTLIH  101 (143)
T ss_dssp             EEEETTT--------TEEEEEEEEEE-E-TTEEEEEEEE
T ss_pred             EEEEcCC--------CcEEEEEEEEc-C-CCcEEEEEEE
Confidence            7774211        13467888886 3 5668777543

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=97.22  E-value=0.0013  Score=48.97  Aligned_cols=129  Identities=9%  Similarity=0.012  Sum_probs=78.1

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC--------------CCcceE
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA--------------GNPQIV   70 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g--------------g~~~~~   70 (183)
                      ..+..+..++||+++||+++-+- ..+.+|+...       +.+ -.+|..-.+.+. .+              +....+
T Consensus        19 ~~l~~er~~~Ap~e~VW~AlTdp-e~l~~W~~p~-------~~d-~~~Gg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   88 (183)
T d2k5ga1          19 QSIRFERLLPGPIERVWAWLADA-DKRARWLAGG-------ELP-RQPGQTFELHFN-HAALTAETAPARYAQYDRPIVA   88 (183)
T ss_dssp             SSEEEEEEESSSSHHHHHHHHCH-HHHTTTSCCC-------CCC-SSTTCEEEEEEC-GGGSCCSSCCSSCSGGGSCEEE
T ss_pred             ceEEEEEEeCCCHHHHHHHHhCh-HHHhhhcCCC-------Ccc-ccCCCEEEEEec-CCCCcccccccccccCCCceeE
Confidence            56889999999999999999964 6789998531       223 234433344433 11              111246


Q ss_pred             EEEEEeecCCceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHH
Q 030045           71 KELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVK  148 (183)
Q Consensus        71 kErl~~iD~~~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k  148 (183)
                      .-++.++++. +++.|+.-.++..  ..  -..++++.|.   ++||.++.+-.  ..    +.... . .......++.
T Consensus        89 ~g~v~~~~p~-~rl~~tw~~~~~~--~~--s~v~~~l~~~---g~gT~ltl~~~--~~----~~~~~~~~~~~GW~~~L~  154 (183)
T d2k5ga1          89 RHTLLRCEPP-RVLALTWGGGAGE--AP--SEVLFELSEA---GEQVRLVLTHT--RL----ADRAAMLDVAGGWHAHLA  154 (183)
T ss_dssp             EEEEEEEETT-TEEEEECCCCSSS--SC--CEEEEEEEEC---SSSEEEEEEEE--CC----CSHHHHHHHTTTTTTHHH
T ss_pred             EEEEEEEeCC-eEEEEEeccCCCC--Cc--EEEEEEEEEc---CCcEEEEEEEe--cC----CChhhHHHHhhhHHHHHH
Confidence            7788999874 4567776544432  12  2357788885   66787765443  21    22222 1 3333467788


Q ss_pred             HHHHHHhhC
Q 030045          149 NIDAYIIQH  157 (183)
Q Consensus       149 ~ie~yLl~~  157 (183)
                      .+.+||-..
T Consensus       155 ~L~~~leg~  163 (183)
T d2k5ga1         155 VLAGKLAGQ  163 (183)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHCCC
Confidence            888888653

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=97.22  E-value=0.00024  Score=51.40  Aligned_cols=134  Identities=13%  Similarity=0.043  Sum_probs=71.3

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCc-----eeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCc
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQS-----VQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDEN   81 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~-----v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~   81 (183)
                      +..++.|+||+++||+++-+   .+++|.|..     +.++.+..+.   -|..+. . . .+|. ..+.-++.++++.+
T Consensus         6 v~~~~~i~Ap~e~Vf~a~te---~~~~Ww~~~~~~~~~~~~~~~~~~---gG~~~~-~-~-~dG~-~~~~g~v~ei~p~~   75 (155)
T d1zxfa1           6 VRHSVTVKADRKTAFKTFLE---GFPEWWPNNFRTTKVGAPLGVDKK---GGRWYE-I-D-EQGE-EHTFGLIRKVDEPD   75 (155)
T ss_dssp             EEEEEEESSHHHHHHHHHTT---CSSSSSSGGGSTTTTCSSCEEETT---TTEEEC-C-C-TTTS-CCCCEEEEEEETTT
T ss_pred             EEEEEEEeCCHHHHHHHHHh---hhHhhcCCCCCCceEEEEEEeeCC---CceEEE-E-c-cccc-eeeeEEEEEEecCc
Confidence            67899999999999999985   268887533     2233333232   133321 1 2 3332 23445788887776


Q ss_pred             eEEEEEEE-eccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-HHH----HHHHHHHHHHHHHHh
Q 030045           82 YITIFKLI-EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-KVL----EMMIDIVKNIDAYII  155 (183)
Q Consensus        82 ~~~~y~vi-EG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~~~----~~~~~~~k~ie~yLl  155 (183)
                       ++.|+-- .++.....-.....++.+++. + +++|.++.+-  ...... ..... ...    +....++..+.+||-
T Consensus        76 -rl~~tw~~~~~~~~~~~~~s~v~~~~~~~-~-~~~T~ltl~h--~g~~~~-~~~~~~~~~~~~~~GW~~~L~~L~~~le  149 (155)
T d1zxfa1          76 -TLVIGWRLNGFGRIDPDNSSEFTVTFVAD-G-QKKTRVDVEH--THFDRM-GTKHAKRVRNGMDKGWPTILQSFQDKID  149 (155)
T ss_dssp             -EEEEECCCSSSSSCCCSSCCCEEEEEEEE-T-TTEEEEEEEE--CSSTTS-CHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             -EEEEEEecCCccccccccceEEEEEEEec-C-CCCEEEEEEE--eccCcc-cchhHHHHHhhhhhhHHHHHHHHHHHhh
Confidence             4555532 222111011123567778886 3 5677665442  232221 11111 122    234677788888875


Q ss_pred             h
Q 030045          156 Q  156 (183)
Q Consensus       156 ~  156 (183)
                      +
T Consensus       150 ~  150 (155)
T d1zxfa1         150 E  150 (155)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00023  Score=50.90  Aligned_cols=123  Identities=11%  Similarity=0.092  Sum_probs=70.8

Q ss_pred             ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce-
Q 030045            4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY-   82 (183)
Q Consensus         4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~-   82 (183)
                      ..++..+.+++|||++||+++-+- ..+.+|+... .     +.| -.+|..  +.+.  ++   .+.-++.++++.++ 
T Consensus         3 T~~i~~~r~~~ap~e~Vw~a~tdp-e~l~~W~~~~-~-----~~d-~~~Gg~--f~~~--~g---~~~G~~~ev~p~~rl   67 (132)
T d1x53a1           3 TCKITLKETFLTSPEELYRVFTTQ-ELVQAFTHAP-A-----TLE-ADRGGK--FHMV--DG---NVSGEFTDLVPEKHI   67 (132)
T ss_dssp             EEEEEEEEEESSCHHHHHHHTTCH-HHHHHHSCSC-C-----BCC-CSTTCC--CBBT--TT---TEECCEEEEETTTEE
T ss_pred             ceEEEEEEEECCCHHHHHHHHcCH-HHHHhhhCCc-c-----ccc-cccCCE--EEEE--ec---ceeEEEEEEeCCCEE
Confidence            356899999999999999999964 6788998422 2     233 123321  2333  22   23446677777664 


Q ss_pred             EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH-HHHHHHH-HHHHHHHHH
Q 030045           83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK-VLEMMID-IVKNIDAYI  154 (183)
Q Consensus        83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~-~~~~~~~-~~k~ie~yL  154 (183)
                      .++++.-+.+. . .+  -..++++.|.   +++|.++.+-..-+.      .+.+ ..+.-.. ++..|.+|+
T Consensus        68 v~tw~~~~~~~-~-~~--s~vt~~l~~~---~~~T~l~l~~~g~p~------~~~e~~~~GW~~~~~~~lk~~f  128 (132)
T d1x53a1          68 VMKWRFKSWPE-G-HF--ATITLTFIDK---NGETELCMEGRGIPA------PEEERTRQGWQRYYFEGIKQTF  128 (132)
T ss_dssp             EEEEEETTSCT-T-CC--EEEEEECCBC---SSCEEEEEEEEEEEH------HHHHHHHHTTHHHHHHHHHHHT
T ss_pred             EEEEecCCCCC-C-Cc--EEEEEEEEEC---CCcEEEEEEEECCCc------chHHHHHhhHHHHHHHHHHHHc
Confidence            33444443322 1 22  2457777886   678988887764331      1111 3333333 577777664

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.044  Score=40.73  Aligned_cols=147  Identities=9%  Similarity=0.031  Sum_probs=85.4

Q ss_pred             EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCC-C---cceEEEEEEeecCCce
Q 030045            7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAG-N---PQIVKELIEVVDDENY   82 (183)
Q Consensus         7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg-~---~~~~kErl~~iD~~~~   82 (183)
                      +..+.++++|+++++..+.......++|.| .+..+++++-- +.-..|-...+..... +   ...+-.|-...+++..
T Consensus        54 ~k~~~~i~~~~~~v~~~~~~d~e~~~~Wd~-~~~~~~ile~~-~~~~~i~~~~~~~~~~~~vs~RD~v~~~~~~~~~~~~  131 (214)
T d1em2a_          54 FILKTFLPCPAELVYQEVILQPERMVLWNK-TVTACQILQRV-EDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRY  131 (214)
T ss_dssp             EEEEEEESSCHHHHHHHTTTCHHHHTTTCT-TEEEEEEEEEE-TTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSEE
T ss_pred             EEEEEEEeCCHHHHHHHHHhChHHHHHHHH-HHhheEEEEEc-CCCceEEEEEecccCCCCCCCcEEEEEEEEEEcCCcE
Confidence            578889999999999755433367899999 78888888752 1112232222220111 1   1344455555566666


Q ss_pred             EEEEEEEecccc---c--cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH--HHHHHHHHHHHHHHHHh
Q 030045           83 ITIFKLIEGNVL---E--MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK--VLEMMIDIVKNIDAYII  155 (183)
Q Consensus        83 ~~~y~viEG~~l---~--~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~--~~~~~~~~~k~ie~yLl  155 (183)
                      .+....+.-+..   .  .....+.+.+.+.|.++++++|.++|.+..++.|. .|.-...  .......+++.+..++.
T Consensus       132 ~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~Lrk~~~  210 (214)
T d1em2a_         132 LSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LPRYLIHQSLAATMFEFAFHLRQRIS  210 (214)
T ss_dssp             EEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEEeCCCCC-CCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            665555543322   1  12234446666777522245799999999888774 2322222  34445677777777775


Q ss_pred             h
Q 030045          156 Q  156 (183)
Q Consensus       156 ~  156 (183)
                      .
T Consensus       211 k  211 (214)
T d1em2a_         211 E  211 (214)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.79  E-value=0.028  Score=41.17  Aligned_cols=130  Identities=12%  Similarity=0.152  Sum_probs=76.1

Q ss_pred             EEEEEEEEcCC---------HHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEe
Q 030045            6 ELEAVIEVKAS---------ADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEV   76 (183)
Q Consensus         6 ~~~~ei~i~ap---------a~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~   76 (183)
                      ++++-|+||-|         .+++|+-+......--...| .+.+|++++.+  +-+-.|.++|. .+    .++|++..
T Consensus         2 ~feHlv~IN~p~~p~~p~LTr~QlW~GL~lrar~p~~Fv~-~l~~c~v~~~~--~~~~~Rel~fg-~~----~v~e~Vtl   73 (151)
T d2ffsa1           2 QFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRAREPQYFVV-GLERFEILVDD--GDRLHRRLYLP-GL----VVEDEVVL   73 (151)
T ss_dssp             CEEEEEECCCCCC---CCCCHHHHHHHHHHHHHCGGGTCT-TCCEEEEEEEC--SSEEEEEEEET-TE----EEEEEEEE
T ss_pred             cceEEEecCCCCCCCCCccCHHHHHHHHHHhhcCHhhccc-ccceEEEEEec--CCeEEEEEEEC-Cc----eeEEEEEE
Confidence            35666677665         45999988744333345567 79999999765  44789999997 33    79999875


Q ss_pred             ecCCceEEEEEEEe-ccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe-cCCCCCCch---H--H--HHHHHHHHH
Q 030045           77 VDDENYITIFKLIE-GNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK-QNENVPDLE---S--K--VLEMMIDIV  147 (183)
Q Consensus        77 iD~~~~~~~y~viE-G~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~-~~~~~~~p~---~--~--~~~~~~~~~  147 (183)
                      .  ...++.|++-. |+.   .-.+...+|+ .|.   + |- .-.++.|+. .++..++..   .  +  |++.....+
T Consensus        74 ~--~~~~v~f~~~a~~~~---~g~~l~~~Ie-ep~---~-g~-L~lrf~Ye~~~p~~~~~~~~~~e~~ksaY~~ad~dTv  142 (151)
T d2ffsa1          74 K--APDSAHYSIKPSAEV---AGGSLDMTIE-EPE---P-GS-LFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETI  142 (151)
T ss_dssp             E--TTTEEEEEECCCSSS---BEEEEEEEEE-EEE---T-TE-EEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHH
T ss_pred             c--CCcEEEEEcccccCC---CCcEEEEEEc-cCC---C-Ce-EEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHhHHHH
Confidence            4  33345776653 332   1234444443 242   3 33 344667764 333222211   1  1  555556677


Q ss_pred             HHHHHHH
Q 030045          148 KNIDAYI  154 (183)
Q Consensus       148 k~ie~yL  154 (183)
                      +.|=+|.
T Consensus       143 r~IRe~~  149 (151)
T d2ffsa1         143 ATIRDRF  149 (151)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7776664

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.081  Score=38.78  Aligned_cols=146  Identities=10%  Similarity=-0.027  Sum_probs=81.6

Q ss_pred             eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCC----cceEEEEEEeecCC
Q 030045            5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGN----PQIVKELIEVVDDE   80 (183)
Q Consensus         5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~----~~~~kErl~~iD~~   80 (183)
                      ..+..+..+++|++++++.+.|. ...++|.| .+..+++++-. +.-..+-...+.....+    ...+--|-..-+++
T Consensus        44 ~~~r~~~~i~~~~~~v~~~l~d~-~~~~~Wd~-~~~~~~~le~~-~~~~~i~~~~~~~~~~~~v~~RD~v~~~~~~~~~~  120 (199)
T d1jssa_          44 YLYKAQGVMDDVVNNVIDHIRPG-PWRLDWDR-LMTSLDVLEHF-EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEE  120 (199)
T ss_dssp             EEEEEEEEESSCHHHHHHHHSSS-TTHHHHCS-SEEEEEEEEEC-STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETT
T ss_pred             EEEEEEEEeCCCHHHHHHHHhCh-hhhhhccc-chheEEEEEEc-CCCcEEEEEEEcccCCCCcCCcEEEEEEEEEEcCC
Confidence            35788999999999999999876 56899999 79999999864 22233433333201111    11222222223343


Q ss_pred             ceEEEEEEEecccc-c--cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 030045           81 NYITIFKLIEGNVL-E--MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYI  154 (183)
Q Consensus        81 ~~~~~y~viEG~~l-~--~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yL  154 (183)
                      ...+.......... +  .....+.+.+.+.|.++|.++|.++|.+..++.|. .|.--. . .......+++.+.+.|
T Consensus       121 ~~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~Lr~~l  198 (199)
T d1jssa_         121 GLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IPQSAVDTAMASTLANFYSDLRKGL  198 (199)
T ss_dssp             EEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCCCCC-CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333322222211 2  12234556777888612012589999998888764 233222 2 3444456666666554

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.91  Score=32.76  Aligned_cols=141  Identities=13%  Similarity=0.102  Sum_probs=75.6

Q ss_pred             EEEEEEEEc-CCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc---ceE-EEEEEeecCC
Q 030045            6 ELEAVIEVK-ASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP---QIV-KELIEVVDDE   80 (183)
Q Consensus         6 ~~~~ei~i~-apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~---~~~-kErl~~iD~~   80 (183)
                      .+..+.++. +|++.++.++.|. ...++|.|. +.++.....+ +  -.|-.+.+. .-.+.   ..+ ..+....+++
T Consensus        46 ~~k~~~~i~~~~~~~~~~~l~d~-~~~~~Wd~~-~~~~~~~~~~-~--~~i~y~~~~-~p~p~~~RD~v~~~~~~~~~~~  119 (203)
T d1ln1a_          46 EYKVFGVLEDCSPTLLADIYMDS-DYRKQWDQY-VKELYEQECN-G--ETVVYWEVK-YPFPMSNRDYVYLRQRRDLDME  119 (203)
T ss_dssp             EEEEEEEETTSCHHHHHHHHHCH-HHHHHHCTT-EEEEEEEEET-T--EEEEEEEEC-CCTTSCCEEEEEEEEEEEECST
T ss_pred             EEEEEEEEcCCCHHHHHHHHcCH-hHhhhhccc-ceEEEEEccC-C--cEEEEEEcc-cccccCCceEEEEEEEEEccCC
Confidence            466788884 9999999999975 568999995 5555433222 1  123333443 22221   122 2222223333


Q ss_pred             ceEEEEE---EEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH--HHHHHHHHHHHH
Q 030045           81 NYITIFK---LIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK--VLEMMIDIVKNI  150 (183)
Q Consensus        81 ~~~~~y~---viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~--~~~~~~~~~k~i  150 (183)
                      ...+...   ..+=+..+     .....+.+.+.+.|. + +++|.+++....++.+. .|.-...  .+.....+++.|
T Consensus       120 ~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~-~-~~~t~v~~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~l  196 (203)
T d1ln1a_         120 GRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESD-G-KKGSKVFMYYFDNPGGQ-IPSWLINWAAKNGVPNFLKDM  196 (203)
T ss_dssp             TCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEEC-S-SSSEEEEEEEEECCSSC-CCHHHHHHHHHTHHHHHHHHH
T ss_pred             CCeEEEEEeecccCCcCcccCCccccceeeEEEEEEec-C-CCcEEEEEEEEcCCCCc-CHHHHHHHHHHHHHHHHHHHH
Confidence            3222221   12211111     123345677888886 3 67899999998777653 3322221  344445667776


Q ss_pred             HHHHh
Q 030045          151 DAYII  155 (183)
Q Consensus       151 e~yLl  155 (183)
                      ....+
T Consensus       197 ~k~~~  201 (203)
T d1ln1a_         197 ARACQ  201 (203)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            65543