Citrus Sinensis ID: 030065

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MLLVQYSIASLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFIDT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEEEHHHHccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEcEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccEEEEcccccccccccHHHcccc
Coil and Loop (DISEMBL)
MLLVQYSIASLAMTTLSNLTTDQSALLAFKARVVDYRsdltnnwsisypicswvgiscgsrhqrvtalnlsdmglggtiplhlgnLSFLVSLDVAhnnfhghlpneLGQLRRLRFIRFGfnklsgsipTWIGVLSKLQTLRlynnsftgpipnsllnlskleVFDAIYNVidgtttkmtfidt
Flexible Loop (DISEMBL)
MLLVQYSIASLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFnklsgsiptWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVidgtttkmtfidt
Low Complexity Region (SEG)
MLLVQYSIASLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFIDT
Disordered region (IsUnstruct)
**LVQYSIASLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF***
Disordered Region (DISOPRED)
MLLVQYSIASLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFID*
Disordered Region (DISEMBL)
MLLVQYSIASLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFIDT
Disordered Region (DISPRO)
MLLVQYSIASLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLVQYSIASLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFIDT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.836	0.151	0.384	4e-29
C0LGT6	1031	LRR receptor-like serine/	no	no	0.923	0.163	0.381	3e-25
Q9SD62	1025	Putative receptor-like pr	no	no	0.928	0.165	0.376	4e-25
Q42371	976	LRR receptor-like serine/	no	no	0.912	0.171	0.341	6e-21
Q6XAT2	967	LRR receptor-like serine/	no	no	0.923	0.174	0.325	2e-19
C0LGW6	966	LRR receptor-like serine/	no	no	0.945	0.179	0.324	1e-18
P93194	1109	Receptor-like protein kin	N/A	no	0.841	0.138	0.360	2e-18
C0LGS3	768	Probable LRR receptor-lik	no	no	0.852	0.203	0.379	3e-17
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.803	0.146	0.355	3e-17
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.857	0.142	0.340	3e-17

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  127 bits (319), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 103/177 (58%), Gaps = 24/177 (13%)

Query: 21  TDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIP 80
           TD+ ALL FK++V + +  + ++W+ S+P+C+W G++CG +++RVT L L  + LGG I 
Sbjct: 24  TDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVIS 83

Query: 81  LHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGF-------------------- 120
             +GNLSFLVSLD+  N F G +P E+GQL RL ++  G                     
Sbjct: 84  PSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNL 143

Query: 121 ----NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
               N+L GS+P+ +G L+ L  L LY N+  G +P SL NL+ LE     +N ++G
Sbjct: 144 RLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEG 200

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  114 bits (286), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 103/173 (59%), Gaps = 4/173 (2%)

Query: 2   LLVQYSIASLAMTTLSNLTTDQSALLAFKARVVDY-RSDLTNNWSISYPICSWVGISCGS 60
           LL+Q  I   A    SN  TD  ALL FK++V +  + ++  +W+ S P C+W+G++CG 
Sbjct: 14  LLLQVCI--FAQARFSN-ETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGR 70

Query: 61  RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGF 120
           R +RV +LNL    L G I   +GNLSFL  L++A N+F   +P ++G+L RL+++   +
Sbjct: 71  RRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSY 130

Query: 121 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
           N L G IP+ +   S+L T+ L +N     +P+ L +LSKL + D   N + G
Sbjct: 131 NLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTG 183

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  114 bits (285), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 106/194 (54%), Gaps = 24/194 (12%)

Query: 4   VQYSIASLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQ 63
           +++S    A T      TD+ ALL FK++V +    +  +W+ S P+CSW G+ CG +H+
Sbjct: 22  LEHSDMVCAQTIRLTEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHR 81

Query: 64  RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR-----F 118
           RVT ++L  + L G +   +GNLSFL SL++A N FHG +P+E+G L RL+++      F
Sbjct: 82  RVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLF 141

Query: 119 G-------------------FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLS 159
           G                    N L   +P   G LSKL  L L  N+ TG  P SL NL+
Sbjct: 142 GGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLT 201

Query: 160 KLEVFDAIYNVIDG 173
            L++ D IYN I+G
Sbjct: 202 SLQMLDFIYNQIEG 215

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  100 bits (249), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 6/173 (3%)

Query: 12  AMTTLSNLTTDQSA-LLAFKARVVDYRS---DLTNNWSISYPICSWVGISCGSRHQRVTA 67
            ++ ++ +T+++ A LL  K    D  +   D T + S  Y  C W G+SC +    V A
Sbjct: 15  CLSLVATVTSEEGATLLEIKKSFKDVNNVLYDWTTSPSSDY--CVWRGVSCENVTFNVVA 72

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           LNLSD+ L G I   +G+L  L+S+D+  N   G +P+E+G    L+ +   FN+LSG I
Sbjct: 73  LNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDI 132

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
           P  I  L +L+ L L NN   GPIP++L  +  L++ D   N + G   ++ +
Sbjct: 133 PFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIY 185

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 3/172 (1%)

Query: 11  LAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSI--SYPICSWVGISCGSRHQRVTAL 68
           + + ++S +  +  AL+A KA   +  +++  +W    ++  CSW G+ C +    V +L
Sbjct: 20  MLLGSVSPMNNEGKALMAIKASFSNV-ANMLLDWDDVHNHDFCSWRGVFCDNVSLNVVSL 78

Query: 69  NLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP 128
           NLS++ LGG I   LG+L  L S+D+  N   G +P+E+G    L ++ F  N L G IP
Sbjct: 79  NLSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFSTNLLFGDIP 138

Query: 129 TWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
             I  L +L+ L L NN  TGPIP +L  +  L+  D   N + G   ++ +
Sbjct: 139 FSISKLKQLEFLNLKNNQLTGPIPATLTQIPNLKTLDLARNQLTGEIPRLLY 190

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 15/188 (7%)

Query: 4   VQYSIASLAMT------TLSNLTTDQSALLAFKARVVDYRSDLTN---NWSISY--PICS 52
           +Q  + SLAM         S +  +  AL+A K       S+L N   +W   +   +CS
Sbjct: 5   MQRMVLSLAMVGFMVFGVASAMNNEGKALMAIKGSF----SNLVNMLLDWDDVHNSDLCS 60

Query: 53  WVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRR 112
           W G+ C +    V +LNLS + LGG I   +G+L  L S+D+  N   G +P+E+G    
Sbjct: 61  WRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCAS 120

Query: 113 LRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172
           L ++    N L G IP  I  L +L+TL L NN  TGP+P +L  +  L+  D   N + 
Sbjct: 121 LVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPATLTQIPNLKRLDLAGNHLT 180

Query: 173 GTTTKMTF 180
           G  +++ +
Sbjct: 181 GEISRLLY 188

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 4/158 (2%)

Query: 19  LTTDQSALLAFKARVVDYRSDLTNNW--SISYPICSWVGISCGSRHQRVTALNLSDMGLG 76
           L +D +ALL+         SD+T +W  S S P CSW+G+ C  R Q V  LNLS  G+ 
Sbjct: 24  LNSDGAALLSLTRHWTSIPSDITQSWNASDSTP-CSWLGVEC-DRRQFVDTLNLSSYGIS 81

Query: 77  GTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSK 136
           G     + +L  L  + ++ N F G +P++LG    L  I    N  +G+IP  +G L  
Sbjct: 82  GEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQN 141

Query: 137 LQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
           L+ L L+ NS  GP P SLL++  LE      N ++G+
Sbjct: 142 LRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGS 179

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS3|Y4372_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 17  SNLTTDQSALLAFKARVVDYRSDLTNNWSISYP-ICSWVGISCGSRHQRVTALNLSDMGL 75
           S L +D   L+ FK+ V+     L   W+  +   CSW GISC +   +V  L+L +  L
Sbjct: 20  SALNSDGLVLMKFKSSVLVDPLSLLQTWNYKHESPCSWRGISC-NNDSKVLTLSLPNSQL 78

Query: 76  GGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLS 135
            G+IP  LG+L  L SLD+++N+F+G LP      R LRF+    N +SG IP+ IG L 
Sbjct: 79  LGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLH 138

Query: 136 KLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
            L TL L +N+  G +P +L +L  L V     N   G
Sbjct: 139 NLLTLNLSDNALAGKLPTNLASLRNLTVVSLENNYFSG 176

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 2/149 (1%)

Query: 15  TLSNLTTDQSALLAFKAR-VVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDM 73
           T++   T+  ALL+ K+   +D  S L  +W++S   CSW G++C    + VT+L+LS +
Sbjct: 20  TVAKPITELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGL 79

Query: 74  GLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGV 133
            L GT+   + +L  L +L +A N   G +P ++  L  LR +    N  +GS P  +  
Sbjct: 80  NLSGTLSSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSS 139

Query: 134 -LSKLQTLRLYNNSFTGPIPNSLLNLSKL 161
            L  L+ L LYNN+ TG +P SL NL++L
Sbjct: 140 GLVNLRVLDLYNNNLTGDLPVSLTNLTQL 168

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 90/185 (48%), Gaps = 28/185 (15%)

Query: 17  SNLTTDQSALLAFKARVVDYRSDLTN-NWSISYPICSWVGISCG--SRHQRVTALNLSDM 73
           + L  +   LL  K++ VD + +L N N + S P C W G+ C   S    V +LNLS M
Sbjct: 25  TGLNLEGQYLLEIKSKFVDAKQNLRNWNSNDSVP-CGWTGVMCSNYSSDPEVLSLNLSSM 83

Query: 74  ------------------------GLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQ 109
                                   GL G IP  +GN S L  L + +N F G +P E+G+
Sbjct: 84  VLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGK 143

Query: 110 LRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
           L  L  +    N++SGS+P  IG L  L  L  Y+N+ +G +P S+ NL +L  F A  N
Sbjct: 144 LVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQN 203

Query: 170 VIDGT 174
           +I G+
Sbjct: 204 MISGS 208

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
255583729	383	serine-threonine protein kinase, plant-t	0.967	0.462	0.488	1e-40
224115338	255	predicted protein [Populus trichocarpa]	0.907	0.650	0.491	1e-38
255578886	1043	serine-threonine protein kinase, plant-t	0.775	0.136	0.531	1e-36
356510768	1214	PREDICTED: probable LRR receptor-like se	0.863	0.130	0.503	1e-36
449500845	982	PREDICTED: probable LRR receptor-like se	0.928	0.173	0.461	3e-36
359483198	1087	PREDICTED: probable LRR receptor-like se	0.928	0.156	0.517	1e-35
298204751	1979	unnamed protein product [Vitis vinifera]	0.950	0.087	0.471	2e-35
449465016	1092	PREDICTED: probable LRR receptor-like se	0.901	0.151	0.469	4e-35
147773168	362	hypothetical protein VITISV_016304 [Viti	0.863	0.436	0.525	9e-35
224139658	1019	predicted protein [Populus trichocarpa]	0.956	0.171	0.486	6e-34

>gi|255583729|ref|XP_002532618.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223527674|gb|EEF29784.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/178 (48%), Positives = 117/178 (65%), Gaps = 1/178 (0%)

Query: 1   MLLVQYSIASLAMTTLSNLTTDQSALLAFKARVV-DYRSDLTNNWSISYPICSWVGISCG 59
           ++++ YS  +  +  ++NL TDQ  LLA K R++ D  + L  NWS +  +C+WVG++CG
Sbjct: 12  IMMLLYSFFASLVEGVTNLATDQDGLLALKLRLIRDPNNLLATNWSTTTSVCTWVGVTCG 71

Query: 60  SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFG 119
           +RH RV AL+LSDMGL GT+P HLGNLSFLV +   +N+FHG LPNEL +LRR++     
Sbjct: 72  ARHGRVAALDLSDMGLTGTVPPHLGNLSFLVFISFYNNSFHGSLPNELSKLRRMKTFWLT 131

Query: 120 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK 177
            N  SG IP+W+G  ++LQ L L  N FTG IP S  NLSKL  FD   N + G   K
Sbjct: 132 KNYFSGEIPSWLGSFARLQQLSLGFNKFTGVIPVSFFNLSKLNFFDLSSNKLQGYIPK 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115338|ref|XP_002317007.1| predicted protein [Populus trichocarpa] gi|222860072|gb|EEE97619.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/167 (49%), Positives = 112/167 (67%), Gaps = 1/167 (0%)

Query: 8   IASLAMTTLSNLTTDQSALLAFKARVV-DYRSDLTNNWSISYPICSWVGISCGSRHQRVT 66
           + +L    ++++TTDQ ALLA K  +V D ++ LT NW+ +  +C WVG++CG+RH+RV 
Sbjct: 19  VVTLVANRVTSITTDQDALLALKDHIVNDPQNLLTTNWTATTSVCDWVGVTCGTRHRRVR 78

Query: 67  ALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS 126
           AL LS MGL GTIP H GNLSFLV     +N+F G LP+EL +LRRL++     N   G 
Sbjct: 79  ALKLSHMGLTGTIPPHFGNLSFLVFASFYNNSFRGSLPDELAKLRRLKYFSIQKNYFGGE 138

Query: 127 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
           IP+W+G  ++L TL L NNSFTG IP SL +LS+L+  D   N + G
Sbjct: 139 IPSWLGSFTRLHTLSLANNSFTGAIPPSLFHLSELDGLDLSNNDLQG 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578886|ref|XP_002530297.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223530195|gb|EEF32104.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 101/143 (70%), Gaps = 1/143 (0%)

Query: 16  LSNLTTDQSALLAFKARVV-DYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMG 74
           ++N+ +DQ ALLA K R++ D  + L  NWSI+  +C+WVG++CG+RH RVTAL+LSDMG
Sbjct: 28  VTNIASDQDALLALKVRIIRDPNNLLAANWSITTSVCTWVGVTCGARHGRVTALDLSDMG 87

Query: 75  LGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVL 134
           L GTIP HLGNLSFL  +   +N FHG LP+EL +LRR++      N  SG IP+WIG  
Sbjct: 88  LTGTIPPHLGNLSFLAFISFYNNRFHGSLPDELSKLRRIKAFGMSTNYFSGEIPSWIGSF 147

Query: 135 SKLQTLRLYNNSFTGPIPNSLLN 157
           ++LQ L L +N FTG +P  L N
Sbjct: 148 TQLQRLSLSSNKFTGLLPAILAN 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510768|ref|XP_003524106.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/159 (50%), Positives = 105/159 (66%), Gaps = 1/159 (0%)

Query: 17  SNLTTDQSALLAFKARVV-DYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGL 75
           +N TTD+ ALLA K+ +  D  + LT+NWS +  +C+WVG++C + H RV  LNL DM L
Sbjct: 29  TNFTTDKLALLALKSSITRDPHNFLTHNWSATTSVCNWVGVTCDAYHGRVRTLNLGDMSL 88

Query: 76  GGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLS 135
            G +P HLGNL+FL  LD+  N FHG LP EL QL RL+F+   +N+ SG++  WIG LS
Sbjct: 89  SGIMPSHLGNLTFLNKLDLGGNKFHGQLPEELVQLHRLKFLNLSYNEFSGNVSEWIGGLS 148

Query: 136 KLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
            L+ L L NN F G IP S+ NL+ LE+ D   N I GT
Sbjct: 149 TLRYLNLGNNDFGGFIPKSISNLTMLEIMDWGNNFIQGT 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500845|ref|XP_004161209.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 111/171 (64%), Gaps = 1/171 (0%)

Query: 8   IASLAMTTLSNLTTDQSALLAFKARVV-DYRSDLTNNWSISYPICSWVGISCGSRHQRVT 66
           IA+++M    N+TTDQ+ALLA +A +  D    +TN+WS +  +C+WVGI CG +H+RVT
Sbjct: 18  IATISMAFAQNITTDQAALLALRAHITSDPFGIITNHWSATTSVCNWVGIICGVKHKRVT 77

Query: 67  ALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS 126
           +LN S MGL GT P  +G LSFL  + + +N+FH  LP EL  L RL+ +  G N  SG 
Sbjct: 78  SLNFSFMGLTGTFPPEVGTLSFLTYVTIKNNSFHDPLPIELTNLPRLKMMSLGNNNFSGE 137

Query: 127 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK 177
           IPTWIG L +++ L LY N F+G IP SL NL+ L + +   N + G+  +
Sbjct: 138 IPTWIGRLPRMEELYLYGNQFSGLIPTSLFNLTSLIMLNLQENQLSGSIPR 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483198|ref|XP_002271405.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/174 (51%), Positives = 117/174 (67%), Gaps = 4/174 (2%)

Query: 1   MLLVQYSIASLAMTTLSNLTTDQSALLAFKARV-VDYRSDLTNNWSISYPICSWVGISCG 59
           + +VQ+S A +AM+ LSN T DQS+LLA KA + +D    L  NWS     C W+G+SC 
Sbjct: 14  VFIVQFS-ACVAMS-LSNFT-DQSSLLALKAHITLDPHHVLAGNWSTKTSFCEWIGVSCN 70

Query: 60  SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFG 119
           ++ QRV AL+LS++GL GTIP  LGNLSFLVSLD++ NNFHG +P E+GQL  L  +   
Sbjct: 71  AQQQRVIALDLSNLGLRGTIPPDLGNLSFLVSLDLSSNNFHGPVPVEVGQLTSLLSMNLQ 130

Query: 120 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
           +N LSG IP   G L++LQ+L L NNSFTG IP S+ N+S LE      N + G
Sbjct: 131 YNLLSGQIPPSFGNLNRLQSLFLGNNSFTGTIPPSIGNMSMLETLGLGGNHLQG 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204751|emb|CBI25249.3| unnamed protein product [Vitis vinifera]

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/178 (47%), Positives = 117/178 (65%), Gaps = 4/178 (2%)

Query: 1   MLLVQYSIASLAMTTLSNLTTDQSALLAFKARV-VDYRSDLTNNWSISYPICSWVGISCG 59
           + +VQ+S A +AM+ LSN T DQS+LLA KA + +D    L  NWS     C W+G+SC 
Sbjct: 489 VFIVQFS-ACVAMS-LSNFT-DQSSLLALKAHITLDPHHVLAGNWSTKTSFCEWIGVSCN 545

Query: 60  SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFG 119
           ++ QRV AL+LS++GL GTIP  LGNLSFLVSLD++ NNFHG +P   G L RL+ +  G
Sbjct: 546 AQQQRVIALDLSNLGLRGTIPPDLGNLSFLVSLDLSSNNFHGPIPPSFGNLNRLQSLFLG 605

Query: 120 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK 177
            N  +G+IP  IG +S L+TL + +N   G IP+++ N+S L+     YN + GT  +
Sbjct: 606 NNSFTGTIPPSIGNMSMLETLDIQSNQLVGAIPSAIFNISSLQEIALTYNSLSGTIPE 663

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465016|ref|XP_004150225.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 105/166 (63%), Gaps = 1/166 (0%)

Query: 13  MTTLSNLTTDQSALLAFKARVV-DYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLS 71
           M    N+TTDQ+ALLA +A +  D     TNNWS +  +C+WVGI CG +H+RVT+LN S
Sbjct: 1   MAFAQNITTDQAALLALRAHITSDPFGITTNNWSATTSVCNWVGIICGVKHKRVTSLNFS 60

Query: 72  DMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWI 131
            MGL GT P  +G LSFL  + + +N+FH  LP EL  L RL+ +  G N  SG IPTWI
Sbjct: 61  FMGLTGTFPPEVGTLSFLTYVTIKNNSFHDPLPIELTNLPRLKMMSLGNNNFSGEIPTWI 120

Query: 132 GVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK 177
           G L +++ L LY N F+G IP SL NL+ L + +   N + G+  +
Sbjct: 121 GRLPRMEELYLYGNQFSGLIPTSLFNLTSLIMLNLQENQLSGSIPR 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773168|emb|CAN71566.1| hypothetical protein VITISV_016304 [Vitis vinifera]

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 84/160 (52%), Positives = 107/160 (66%), Gaps = 2/160 (1%)

Query: 15  TLSNLTTDQSALLAFKARV-VDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDM 73
           +LSN T DQS+LLA KA + +D    L  NWS     C W+G+SC ++ QRV AL+LS++
Sbjct: 2   SLSNFT-DQSSLLALKAHITLDPHHVLAGNWSTKTSFCEWMGVSCNAQQQRVIALDLSNL 60

Query: 74  GLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGV 133
           GL GTIP  LGNLSFLVSLD++ NNFHG +P E+GQL  L  +   +N LSG IP   G 
Sbjct: 61  GLSGTIPPDLGNLSFLVSLDLSSNNFHGPVPVEVGQLTSLLSMNLQYNLLSGQIPPSFGN 120

Query: 134 LSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
           L++LQ+L L NNSFTG IP S+ N+S LE      N + G
Sbjct: 121 LNRLQSLFLGNNSFTGTIPPSIGNMSMLETLGLGGNHLQG 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139658|ref|XP_002323215.1| predicted protein [Populus trichocarpa] gi|222867845|gb|EEF04976.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/179 (48%), Positives = 119/179 (66%), Gaps = 4/179 (2%)

Query: 1   MLLVQYSIASLAMTTLSNLTTDQSALLAFKARVV-DYRSDLTNNWSISYPICSWVGISCG 59
           MLL+      +++ T SN T DQSALLAFK  +  D ++ LT++WS     C+W+G+SC 
Sbjct: 12  MLLMSLPKKCISIPT-SNFT-DQSALLAFKDHITFDPQNMLTHSWSSKTSFCNWMGVSCS 69

Query: 60  SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFG 119
            R QRVTAL+LS MGL GTIP  LGNLSFL  L + +N+FHG LP+E+G LRRL+ +  G
Sbjct: 70  LRRQRVTALDLSSMGLLGTIPPQLGNLSFLQYLILYNNSFHGDLPSEIGNLRRLQVMDIG 129

Query: 120 FNKLSGSI-PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK 177
            NKLS  I P   G L +L+ LR   N+ TG IP+++ N+S L+V D ++N + G+  K
Sbjct: 130 SNKLSLVIVPESFGNLHRLEELRFDGNNLTGTIPSTIFNISSLKVLDLMFNGLFGSLPK 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.836	0.151	0.411	1.3e-28
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.890	0.161	0.409	5.4e-27
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.770	0.139	0.418	1.1e-26
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.923	0.163	0.381	3.7e-25
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.928	0.165	0.370	2e-24
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.836	0.188	0.397	4e-22
TAIR|locus:2170668	604	AT5G62710 [Arabidopsis thalian	0.907	0.274	0.380	4.2e-21
TAIR|locus:2157182	751	RLK "receptor-like kinase" [Ar	0.770	0.187	0.391	6.6e-21
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.912	0.171	0.345	1e-20
TAIR|locus:2182855	967	ERL2 "ERECTA-like 2" [Arabidop	0.939	0.177	0.325	3.5e-20

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 1.3e-28, P = 1.3e-28
 Identities = 63/153 (41%), Positives = 98/153 (64%)

Query:    21 TDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIP 80
             TD+ ALL FK++V + + D+ ++W+ S+P+C+W  ++CG +H+RVT LNL  + LGG + 
Sbjct:    24 TDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGGIVS 83

Query:    81 LHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140
               +GN+SFL+SLD++ N F G +P E+G L RL  +   FN L G IP  +   S+L  L
Sbjct:    84 PSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGGIPATLSNCSRLLNL 143

Query:   141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
              LY+N     +P+ L +L+KL + D   N + G
Sbjct:   144 DLYSNPLRQGVPSELGSLTKLVILDLGRNNLKG 176

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 5.4e-27, P = 5.4e-27
 Identities = 68/166 (40%), Positives = 103/166 (62%)

Query:     2 LLVQYSIASLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSR 61
             LL+ ++   L  T      TD+ ALL FK++V + +  + ++W+ S+P+C+W G++CG +
Sbjct:     5 LLLAFNALMLLETHGFTDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRK 64

Query:    62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFN 121
             ++RVT L L  + LGG I   +GNLSFLVSLD+  N F G +P E+GQL RL ++  G N
Sbjct:    65 NKRVTHLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGIN 124

Query:   122 KLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPN---SLLNLSKLEVF 164
              L G IP  +   S+L  LRL +N   G +P+   SL NL +L ++
Sbjct:   125 YLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLY 170

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 59/141 (41%), Positives = 93/141 (65%)

Query:    21 TDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIP 80
             +D+ ALL  K++V + + D  + W+ S+P+CSW  + CG +H+RVT L+L  + LGG I 
Sbjct:    24 SDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGVIS 83

Query:    81 LHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140
               +GNLSFL+ LD+++N+F G +P E+G L RL+++  GFN L G IP  +   S+L  L
Sbjct:    84 PSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLLYL 143

Query:   141 RLYNNSFTGPIPNSLLNLSKL 161
              L++N+    +P+ L +L KL
Sbjct:   144 DLFSNNLGDGVPSELGSLRKL 164

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 3.7e-25, P = 3.7e-25
 Identities = 66/173 (38%), Positives = 103/173 (59%)

Query:     2 LLVQYSIASLAMTTLSNLTTDQSALLAFKARVVDY-RSDLTNNWSISYPICSWVGISCGS 60
             LL+Q  I   A    SN  TD  ALL FK++V +  + ++  +W+ S P C+W+G++CG 
Sbjct:    14 LLLQVCI--FAQARFSN-ETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGR 70

Query:    61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGF 120
             R +RV +LNL    L G I   +GNLSFL  L++A N+F   +P ++G+L RL+++   +
Sbjct:    71 RRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSY 130

Query:   121 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
             N L G IP+ +   S+L T+ L +N     +P+ L +LSKL + D   N + G
Sbjct:   131 NLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTG 183

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 63/170 (37%), Positives = 96/170 (56%)

Query:     4 VQYSIASLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQ 63
             +++S    A T      TD+ ALL FK++V +    +  +W+ S P+CSW G+ CG +H+
Sbjct:    22 LEHSDMVCAQTIRLTEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHR 81

Query:    64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKL 123
             RVT ++L  + L G +   +GNLSFL SL++A N FHG +P+E+G L RL+++    N  
Sbjct:    82 RVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLF 141

Query:   124 SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
              G IP  +   S L TL L +N     +P    +LSKL +     N + G
Sbjct:   142 GGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTG 191

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 268 (99.4 bits), Expect = 4.0e-22, P = 4.0e-22
 Identities = 62/156 (39%), Positives = 87/156 (55%)

Query:    22 DQSALLAFKARVVDYRSDLTNNWSISY--PICSWVGISCGSRH-QRVTALNLSDMGLGGT 78
             D+ ALL+FK+ ++        +W+ S     C+WVG+ CG RH  RV  L L    L G 
Sbjct:    34 DELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGI 93

Query:    79 IPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQ 138
             I   LGNLSFL +L ++ N+  G +P EL +L RL+ +   FN LSG IP  +G L+ L 
Sbjct:    94 ISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLS 153

Query:   139 TLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
              L L NN+ +G IP+SL  L+ L       N + G+
Sbjct:   154 VLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGS 189

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2170668 AT5G62710 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 4.2e-21, P = 4.2e-21
 Identities = 64/168 (38%), Positives = 90/168 (53%)

Query:     7 SIASLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPI-CSWVGISCGSRHQRV 65
             S+A+L ++    LT D  ALL  K+   D R+ L  NW  S    CSW G+SC  + QRV
Sbjct:    12 SVATLFVSCSFALTLDGFALLELKSGFNDTRNSL-ENWKDSDESPCSWTGVSCNPQDQRV 70

Query:    66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
              ++NL  M LGG I   +G LS L  L +  N+ HG++PNE+     LR +    N L G
Sbjct:    71 VSINLPYMQLGGIISPSIGKLSRLQRLALHQNSLHGNIPNEITNCTELRAMYLRANFLQG 130

Query:   126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
              IP  +G L+ L  L L +N+  G IP+S+  L++L   +   N   G
Sbjct:   131 GIPPDLGNLTFLTILDLSSNTLKGAIPSSISRLTRLRSLNLSTNFFSG 178

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2157182 RLK "receptor-like kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 6.6e-21, P = 6.6e-21
 Identities = 56/143 (39%), Positives = 84/143 (58%)

Query:    14 TTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPI-CSWVGISCGSRHQRVTALNLSD 72
             T+L+ LTTD   LL+F+  +VD    +  +W       CSW G++C +  + VT L+L  
Sbjct:    27 TSLA-LTTDGVLLLSFRYSIVDDPLYVFRSWRFDDETPCSWRGVTCDASSRHVTVLSLPS 85

Query:    73 MGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIG 132
               L GT+P +LG+L+ L  LD+++N+ +G  P  L     LRF+    N +SG++P   G
Sbjct:    86 SNLTGTLPSNLGSLNSLQRLDLSNNSINGSFPVSLLNATELRFLDLSDNHISGALPASFG 145

Query:   133 VLSKLQTLRLYNNSFTGPIPNSL 155
              LS LQ L L +NSF G +PN+L
Sbjct:   146 ALSNLQVLNLSDNSFVGELPNTL 168

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 59/171 (34%), Positives = 94/171 (54%)

Query:    13 MTTLSNLTTDQSA-LLAFKARVVDYRSDLTNNW--SISYPICSWVGISCGSRHQRVTALN 69
             ++ ++ +T+++ A LL  K    D  + L + W  S S   C W G+SC +    V ALN
Sbjct:    16 LSLVATVTSEEGATLLEIKKSFKDVNNVLYD-WTTSPSSDYCVWRGVSCENVTFNVVALN 74

Query:    70 LSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPT 129
             LSD+ L G I   +G+L  L+S+D+  N   G +P+E+G    L+ +   FN+LSG IP 
Sbjct:    75 LSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPF 134

Query:   130 WIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
              I  L +L+ L L NN   GPIP++L  +  L++ D   N + G   ++ +
Sbjct:   135 SISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIY 185

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

TAIR|locus:2182855 ERL2 "ERECTA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 57/175 (32%), Positives = 92/175 (52%)

Query:     8 IASLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSI--SYPICSWVGISCGSRHQRV 65
             +  + + ++S +  +  AL+A KA   +  + L + W    ++  CSW G+ C +    V
Sbjct:    17 VVFMLLGSVSPMNNEGKALMAIKASFSNVANMLLD-WDDVHNHDFCSWRGVFCDNVSLNV 75

Query:    66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
              +LNLS++ LGG I   LG+L  L S+D+  N   G +P+E+G    L ++ F  N L G
Sbjct:    76 VSLNLSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFSTNLLFG 135

Query:   126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
              IP  I  L +L+ L L NN  TGPIP +L  +  L+  D   N + G   ++ +
Sbjct:   136 DIPFSISKLKQLEFLNLKNNQLTGPIPATLTQIPNLKTLDLARNQLTGEIPRLLY 190

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.4 bits (219), Expect = 8e-21
 Identities = 48/113 (42%), Positives = 62/113 (54%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           L+L    L G IP  L NL+ L  L +A N   G +P ELGQ++ L++I  G+N LSG I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
           P  IG L+ L  L L  N+ TGPIP+SL NL  L+      N + G      F
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.4 bits (193), Expect = 2e-17
 Identities = 41/106 (38%), Positives = 57/106 (53%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           L L+   L G IP  LG +  L  + + +NN  G +P E+G L  L  +   +N L+G I
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
           P+ +G L  LQ L LY N  +GPIP S+ +L KL   D   N + G
Sbjct: 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.0 bits (179), Expect = 2e-15
 Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 9/136 (6%)

Query: 39  DLTNNWSISYPICSWVGISCGS-RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHN 97
           +L+NN  +S PI   +  +  S R+     LNLS+    G+IP   G++  L +LD+++N
Sbjct: 99  NLSNN-QLSGPIPDDIFTTSSSLRY-----LNLSNNNFTGSIPR--GSIPNLETLDLSNN 150

Query: 98  NFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLN 157
              G +PN++G    L+ +  G N L G IP  +  L+ L+ L L +N   G IP  L  
Sbjct: 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ 210

Query: 158 LSKLEVFDAIYNVIDG 173
           +  L+     YN + G
Sbjct: 211 MKSLKWIYLGYNNLSG 226

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.6 bits (173), Expect = 1e-14
 Identities = 40/100 (40%), Positives = 56/100 (56%)

Query: 75  LGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVL 134
           L G IP  +G L+ L  LD+ +NN  G +P+ LG L+ L+++    NKLSG IP  I  L
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 135 SKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
            KL +L L +NS +G IP  ++ L  LE+     N   G 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 6e-14
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 53  WVGISCG----SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELG 108
           W G  C          +  L L + GL G IP  +  L  L S++++ N+  G++P  LG
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 109 QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSL 155
            +  L  +   +N  +GSIP  +G L+ L+ L L  NS +G +P +L
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 38/107 (35%), Positives = 56/107 (52%)

Query: 67  ALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS 126
            L+LS+  L G IP  +G+ S L  LD+  N   G +PN L  L  L F+    N+L G 
Sbjct: 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203

Query: 127 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
           IP  +G +  L+ + L  N+ +G IP  +  L+ L   D +YN + G
Sbjct: 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.3 bits (159), Expect = 1e-12
 Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 64  RVTALNLSDM---GLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGF 120
            +T+LN  D+    L G IP  LGNL  L  L +  N   G +P  +  L++L  +    
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 121 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
           N LSG IP  +  L  L+ L L++N+FTG IP +L +L +L+V     N   G
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.9 bits (153), Expect = 5e-12
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 29/149 (19%)

Query: 26  LLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGN 85
           LL+FK+ + D    L+N W+ S  +C W GI+C                          N
Sbjct: 34  LLSFKSSINDPLKYLSN-WNSSADVCLWQGITCN-------------------------N 67

Query: 86  LSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLS-KLQTLRLYN 144
            S +VS+D++  N  G + + + +L  ++ I    N+LSG IP  I   S  L+ L L N
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 145 NSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
           N+FTG IP    ++  LE  D   N++ G
Sbjct: 128 NNFTGSIPRG--SIPNLETLDLSNNMLSG 154

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.6 bits (152), Expect = 8e-12
 Identities = 35/99 (35%), Positives = 55/99 (55%)

Query: 75  LGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVL 134
           L G IP  + +L  L+SLD++ N+  G +P  + QL+ L  +    N  +G IP  +  L
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Query: 135 SKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
            +LQ L+L++N F+G IP +L   + L V D   N + G
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 1e-11
 Identities = 45/118 (38%), Positives = 61/118 (51%), Gaps = 6/118 (5%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
           Q++ +L+LSD  L G IP  +  L  L  L +  NNF G +P  L  L RL+ ++   NK
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 123 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLL---NLSKLEVFDAIYNVIDGTTTK 177
            SG IP  +G  + L  L L  N+ TG IP  L    NL KL +F    N ++G   K
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS---NSLEGEIPK 398

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 29/87 (33%), Positives = 46/87 (52%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           L LS+  L G IP  L +   LVSLD++HN   G +P    ++  L  +    N+LSG I
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNS 154
           P  +G +  L  + + +N   G +P++
Sbjct: 564 PKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 36/115 (31%), Positives = 58/115 (50%)

Query: 60  SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFG 119
              +R+  L+LS     G +P  LG+LS L+ L ++ N   G +P+EL   ++L  +   
Sbjct: 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531

Query: 120 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
            N+LSG IP     +  L  L L  N  +G IP +L N+  L   +  +N + G+
Sbjct: 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 3/117 (2%)

Query: 58  CGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR 117
           C S +  +  L L    L G IP  LG    L  + +  N+F G LP+E  +L  + F+ 
Sbjct: 377 CSSGN--LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434

Query: 118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
              N L G I +    +  LQ L L  N F G +P+S     +LE  D   N   G 
Sbjct: 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGA 490

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 34/113 (30%), Positives = 52/113 (46%)

Query: 61  RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGF 120
           +H  +T L+LS   L G IP  L +   L  L +  N+  G +P  LG  R LR +R   
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 121 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
           N  SG +P+    L  +  L + NN+  G I +   ++  L++     N   G
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 33/100 (33%), Positives = 45/100 (45%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
           Q +  L+L      G IP+ L +L  L  L +  N F G +P  LG+   L  +    N 
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367

Query: 123 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLE 162
           L+G IP  +     L  L L++NS  G IP SL     L 
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query: 123 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
           L G IP  I  L  LQ++ L  NS  G IP SL +++ LEV D  YN  +G+
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 22/70 (31%), Positives = 35/70 (50%)

Query: 60  SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFG 119
           S  +++ +L+LS   L G IP     +  L  LD++ N   G +P  LG +  L  +   
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 120 FNKLSGSIPT 129
            N L GS+P+
Sbjct: 580 HNHLHGSLPS 589

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 19 LTTDQSALLAFKARVVDYRSDLTNNWSIS-YPICSWVGISC 58
          L  D+ ALLAFK+ +    S   ++W+ S    CSW G++C
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 64  RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKL 123
            +  L+LSD  +  ++P  L NL  L +LD++ N+    LP  L  L  L  +    NK+
Sbjct: 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI 198

Query: 124 SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
           S  +P  I +LS L+ L L NNS    + +SL NL  L   +   N
Sbjct: 199 S-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN 242

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
PLN03150	623	hypothetical protein; Provisional	99.8
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.64
PLN03150	623	hypothetical protein; Provisional	99.51
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.4
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.4
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.23
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.16
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.13
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.11
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.08
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.04
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.0
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.91
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.9
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.89
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.79
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.75
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.72
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.7
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.67
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.63
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.6
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.57
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.48
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.47
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.39
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.29
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.22
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.08
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.01
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.93
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.89
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.64
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.41
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.41
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.4
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.35
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.22
PRK15386	426	type III secretion protein GogB; Provisional	97.15
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.04
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.74
PRK15386	426	type III secretion protein GogB; Provisional	96.7
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.53
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.47
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.44
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.21
smart00370	26	LRR Leucine-rich repeats, outliers.	96.2
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.2
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.93
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.55
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.51
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.85
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.8
smart00370	26	LRR Leucine-rich repeats, outliers.	94.07
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.07
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.65
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.3
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.3
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.34
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.78
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.38
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.75
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	80.73
PF15240	179	Pro-rich: Proline-rich	80.69

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=5.2e-22  Score=176.23  Aligned_cols=157  Identities=31%  Similarity=0.582  Sum_probs=115.8

Q ss_pred             ChHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCceeeeecCCCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCcc
Q 030065           19 LTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN   98 (183)
Q Consensus        19 ~~~~~~~l~~~k~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~   98 (183)
                      ...|..+|++||..+. ++.....+|....++|.|.|+.|.. ..+++.|+++++++++.++..+..+++|+.|++++|.
T Consensus        27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~  104 (968)
T PLN00113         27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ  104 (968)
T ss_pred             CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence            4588999999999985 5666778998888999999999974 4689999999999988888888888999999999999


Q ss_pred             CCCCChhhhc-CCCCCcEEEecccccccc----------------------cCccccCCCCCcEEEcccCcccCCccccc
Q 030065           99 FHGHLPNELG-QLRRLRFIRFGFNKLSGS----------------------IPTWIGVLSKLQTLRLYNNSFTGPIPNSL  155 (183)
Q Consensus        99 l~~~~p~~~~-~l~~L~~L~l~~n~l~~~----------------------~p~~~~~l~~L~~L~L~~n~l~~~~p~~~  155 (183)
                      +++.+|..+. .+++|++|++++|.+++.                      +|..++.+++|++|++++|.+.+.+|..+
T Consensus       105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~  184 (968)
T PLN00113        105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL  184 (968)
T ss_pred             cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence            8888887654 666666666666666544                      44445555555555555555555555555


Q ss_pred             cCCCCCcEEeccCCcccccCCc
Q 030065          156 LNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       156 ~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      .++++|++|++++|.+++.+|.
T Consensus       185 ~~l~~L~~L~L~~n~l~~~~p~  206 (968)
T PLN00113        185 TNLTSLEFLTLASNQLVGQIPR  206 (968)
T ss_pred             hhCcCCCeeeccCCCCcCcCCh
Confidence            5566666666666666555554

>PLN03150 hypothetical protein; Provisional

Probab=99.80  E-value=7.9e-19  Score=149.17  Aligned_cols=155  Identities=28%  Similarity=0.483  Sum_probs=131.7

Q ss_pred             CCChHHHHHHHHHHHhcccCCCCCCCCCCCCCCCC-----CceeeeecCC----CCcEEEEEccCCCCcccCCccCCCCC
Q 030065           17 SNLTTDQSALLAFKARVVDYRSDLTNNWSISYPIC-----SWVGISCGSR----HQRVTALNLSDMGLGGTIPLHLGNLS   87 (183)
Q Consensus        17 ~~~~~~~~~l~~~k~~~~~~~~~~~~~w~~~~~~c-----~w~gv~c~~~----~~~l~~L~l~~~~l~~~~~~~l~~l~   87 (183)
                      ....+|..+|..+|..+. .+.  ..+|...  +|     .|.|+.|...    ...++.|+++++++.|.+|..+..++
T Consensus       368 ~t~~~~~~aL~~~k~~~~-~~~--~~~W~g~--~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~  442 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLG-LPL--RFGWNGD--PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR  442 (623)
T ss_pred             ccCchHHHHHHHHHHhcC-Ccc--cCCCCCC--CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence            345678999999999885 222  2368642  34     7999999531    13589999999999999999999999


Q ss_pred             CCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCC-CCCcEEec
Q 030065           88 FLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNL-SKLEVFDA  166 (183)
Q Consensus        88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~l  166 (183)
                      +|+.|++++|.++|.+|..+..+++|+.|++++|+++|.+|..++.+++|+.|+|++|+++|.+|..+... .++..+++
T Consensus       443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~  522 (623)
T PLN03150        443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF  522 (623)
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999988653 46778999


Q ss_pred             cCCcccccCC
Q 030065          167 IYNVIDGTTT  176 (183)
Q Consensus       167 ~~N~l~g~ip  176 (183)
                      .+|.....+|
T Consensus       523 ~~N~~lc~~p  532 (623)
T PLN03150        523 TDNAGLCGIP  532 (623)
T ss_pred             cCCccccCCC
Confidence            9986544444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.64  E-value=3.3e-16  Score=139.42  Aligned_cols=116  Identities=31%  Similarity=0.534  Sum_probs=107.9

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      .+++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|+|
T Consensus       475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  554 (968)
T PLN00113        475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL  554 (968)
T ss_pred             ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence            56888999999999888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~  178 (183)
                      ++|+++|.+|..+.++++|++|++++|+++|.+|..
T Consensus       555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             CCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            999999999999999999999999999999999864

>PLN03150 hypothetical protein; Provisional

Probab=99.51  E-value=3.1e-14  Score=121.28  Aligned_cols=92  Identities=32%  Similarity=0.579  Sum_probs=88.4

Q ss_pred             CCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEecc
Q 030065           88 FLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAI  167 (183)
Q Consensus        88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~  167 (183)
                      .++.|+|++|.++|.+|..+..+++|+.|++++|.++|.+|..+..+++|+.|+|++|+++|.+|..+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCccc
Q 030065          168 YNVIDGTTTKMT  179 (183)
Q Consensus       168 ~N~l~g~ip~~~  179 (183)
                      +|+++|.+|..+
T Consensus       499 ~N~l~g~iP~~l  510 (623)
T PLN03150        499 GNSLSGRVPAAL  510 (623)
T ss_pred             CCcccccCChHH
Confidence            999999999764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.40  E-value=8.2e-15  Score=103.81  Aligned_cols=107  Identities=25%  Similarity=0.418  Sum_probs=62.5

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEeccccccc-ccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG-SIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~  141 (183)
                      .+++.|++.+|+++ .+|..+..++.|+.|+++.|++. ..|..|+.++.|+.|++.+|++.. .+|..|..+..|+.|+
T Consensus        56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen   56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence            45566666666666 56666666666666666666666 566666666666666666665542 2344444444444444


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      |+.|.+. .+|..++++++|++|.+..|.+-
T Consensus       134 l~dndfe-~lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen  134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             hcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence            4444444 45555666666666666666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.40  E-value=5.5e-15  Score=104.70  Aligned_cols=114  Identities=24%  Similarity=0.428  Sum_probs=103.6

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      +..+++.|.+++|.++ .+|+.+..+.+|+.|++.+|+++ .+|..++.++.|+.|+++.|++. .+|..|+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3478899999999999 89999999999999999999999 89999999999999999999998 899999999999999


Q ss_pred             EcccCccc-CCccccccCCCCCcEEeccCCcccccCCcc
Q 030065          141 RLYNNSFT-GPIPNSLLNLSKLEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       141 ~L~~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~  178 (183)
                      ||.+|++. ..+|..|..+..|+.|.++.|.+. .+|..
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~d  145 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPD  145 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChh
Confidence            99999986 468888999999999999999998 55543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.23  E-value=1.7e-12  Score=102.51  Aligned_cols=112  Identities=29%  Similarity=0.382  Sum_probs=88.8

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      ++++.|++++|-+. .+|.+++.+..|+.++++.|++. ..|..+..+..++.+-.++|++...-|+.+.+|.+|.+|||
T Consensus       435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL  512 (565)
T KOG0472|consen  435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL  512 (565)
T ss_pred             hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence            56777777777776 77777777777777777777777 67777666666676666667777444455889999999999


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~  178 (183)
                      .+|.+. .+|+.++++.+|++|++.+|+|. ..|..
T Consensus       513 ~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~  546 (565)
T KOG0472|consen  513 QNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQ  546 (565)
T ss_pred             CCCchh-hCChhhccccceeEEEecCCccC-CCHHH
Confidence            999999 89999999999999999999999 43443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.17  E-value=1.8e-12  Score=106.55  Aligned_cols=118  Identities=21%  Similarity=0.206  Sum_probs=68.8

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccC---------
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGV---------  133 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~---------  133 (183)
                      ..+++|+++.|+++..-...+.++++|+.|+++.|.|...-++.|...+.|++|+|++|+++..-+..|..         
T Consensus       269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL  348 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL  348 (873)
T ss_pred             cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence            45666777777766444555666677777777777776555666666666677777766666333334444         


Q ss_pred             ---------------CCCCcEEEcccCcccCCccc---cccCCCCCcEEeccCCcccccCCccccc
Q 030065          134 ---------------LSKLQTLRLYNNSFTGPIPN---SLLNLSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       134 ---------------l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                                     +++|+.|||.+|.+++.+-.   .+..+++|+.|++.+|++. .||...|.
T Consensus       349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfs  413 (873)
T KOG4194|consen  349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFS  413 (873)
T ss_pred             cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhc
Confidence                           44555555555555433221   2344666666666666665 55555553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.16  E-value=4.2e-11  Score=86.31  Aligned_cols=103  Identities=33%  Similarity=0.423  Sum_probs=31.9

Q ss_pred             cEEEEEccCCCCcccCCccCC-CCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccc-cCCCCCcEEE
Q 030065           64 RVTALNLSDMGLGGTIPLHLG-NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWI-GVLSKLQTLR  141 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~  141 (183)
                      +++.|++++|.++ .+. .+. .+.+|+.|++++|.|+ .++ .+..++.|++|++++|+++ .+...+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            4566777777766 332 344 4566777777777776 333 4566777777777777776 444333 3467777777


Q ss_pred             cccCcccCCcc--ccccCCCCCcEEeccCCccc
Q 030065          142 LYNNSFTGPIP--NSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       142 L~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~  172 (183)
                      +++|++. .+-  ..+..+++|+.|++.+|.++
T Consensus        95 L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCC-ChHHhHHHHcCCCcceeeccCCccc
Confidence            7777775 221  23456677777777777765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.13  E-value=1.5e-12  Score=102.86  Aligned_cols=109  Identities=28%  Similarity=0.350  Sum_probs=82.9

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCcccc-CCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIG-VLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~  141 (183)
                      .+++++++..|-++ .+|+.++.+.+|..|+++.|.+. .+| +|..+..|..++++.|++. .+|.+.. +++++.+||
T Consensus       183 ~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLD  258 (565)
T KOG0472|consen  183 KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLD  258 (565)
T ss_pred             HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeee
Confidence            35667777777666 77877888888888888888887 666 6777777777777777776 6665544 778888888


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      |.+|++. ++|.++.-+.+|.+||+++|.+++..+
T Consensus       259 LRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~  292 (565)
T KOG0472|consen  259 LRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPY  292 (565)
T ss_pred             ccccccc-cCchHHHHhhhhhhhcccCCccccCCc
Confidence            8888888 788888888888888888888885433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.11  E-value=6.9e-12  Score=104.26  Aligned_cols=115  Identities=34%  Similarity=0.413  Sum_probs=57.0

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccc-cCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS-IPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~  141 (183)
                      .+++.|.+...++. .+|.++..+.+|++|.+++|++. .+..+++.++.|+.+.+..|++... +|..+..+..|.+||
T Consensus        32 t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD  109 (1255)
T KOG0444|consen   32 TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD  109 (1255)
T ss_pred             hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence            34555555555555 55555555555555555555554 3444444444444444444444321 344444445555555


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                      |+.|++. ..|..+..-+++..|+|++|+|. +||...|+
T Consensus       110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfi  147 (1255)
T KOG0444|consen  110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFI  147 (1255)
T ss_pred             cchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHH
Confidence            5555554 44544444445555555555554 44544443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.08  E-value=1.3e-10  Score=95.81  Aligned_cols=115  Identities=25%  Similarity=0.276  Sum_probs=58.1

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccC-ccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP-TWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~  141 (183)
                      ++++.+.+..|.++ .+|.-.....+++.|+|.+|.|+..-.+.+..++.|+.|||+.|.++ .+| ..|..-.++++|+
T Consensus       102 ~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~  179 (873)
T KOG4194|consen  102 PNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLN  179 (873)
T ss_pred             Ccceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEe
Confidence            34444444444444 44443333334555555555555333344555555555555555555 333 2333334556666


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      |++|.|+..--..|..+.+|..|.|+.|.++ .+|..+|
T Consensus       180 La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~F  217 (873)
T KOG4194|consen  180 LASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSF  217 (873)
T ss_pred             eccccccccccccccccchheeeecccCccc-ccCHHHh
Confidence            6666655322334555556666666666666 5555555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.08  E-value=3.7e-12  Score=105.85  Aligned_cols=112  Identities=28%  Similarity=0.365  Sum_probs=77.6

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      .++..++++.|++. .+|.++.++.+|+.|++++|.|+ ++.-....+.+|++|+++.|+++ .+|+.+..++.|+.|.+
T Consensus       222 ~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~  298 (1255)
T KOG0444|consen  222 HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYA  298 (1255)
T ss_pred             hhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHh
Confidence            56777777777777 77777777777777777777777 55555666667777777777777 67777777777777777


Q ss_pred             ccCcccC-CccccccCCCCCcEEeccCCcccccCCcc
Q 030065          143 YNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       143 ~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~~  178 (183)
                      .+|+++- .+|..++.+.+|+.+..++|++. .+|+.
T Consensus       299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEg  334 (1255)
T KOG0444|consen  299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEG  334 (1255)
T ss_pred             ccCcccccCCccchhhhhhhHHHHhhccccc-cCchh
Confidence            7776542 45666666666666666666665 44543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.04  E-value=2.2e-10  Score=68.45  Aligned_cols=60  Identities=32%  Similarity=0.399  Sum_probs=32.0

Q ss_pred             CCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcc
Q 030065          112 RLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI  171 (183)
Q Consensus       112 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l  171 (183)
                      +|++|++++|+++..-+..|..+++|++|++++|.++..-|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555522224555555666666665555533333455566666666666553

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.03  E-value=9.1e-09  Score=89.29  Aligned_cols=155  Identities=22%  Similarity=0.288  Sum_probs=90.1

Q ss_pred             HHHhhhhccCCChHHHHHHHHHHHhcccCCCC--CCCCCCCCCCCCCcee----------------eeecCC--------
Q 030065            8 IASLAMTTLSNLTTDQSALLAFKARVVDYRSD--LTNNWSISYPICSWVG----------------ISCGSR--------   61 (183)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~k~~~~~~~~~--~~~~w~~~~~~c~w~g----------------v~c~~~--------   61 (183)
                      ++-.+........++...++.+...+..+++.  ...+|...+++|.-..                |.|...        
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~  129 (754)
T PRK15370         50 IAYLCHPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVT  129 (754)
T ss_pred             HHHHhCCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCCCcccccccc
Confidence            33445556677788889999888877644332  2345877777775443                334310        


Q ss_pred             -----------------------------------------------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEe
Q 030065           62 -----------------------------------------------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDV   94 (183)
Q Consensus        62 -----------------------------------------------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l   94 (183)
                                                                     ..+.+.|++++++++ .+|..+.  ++++.|++
T Consensus       130 g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~L  206 (754)
T PRK15370        130 ESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLIL  206 (754)
T ss_pred             cccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEe
Confidence                                                           023567777777777 5665543  36677777


Q ss_pred             cCccCCCCChhhhcCCCCCcEEEecccccccccCccccC-------------------CCCCcEEEcccCcccCCccccc
Q 030065           95 AHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGV-------------------LSKLQTLRLYNNSFTGPIPNSL  155 (183)
Q Consensus        95 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-------------------l~~L~~L~L~~n~l~~~~p~~~  155 (183)
                      ++|.++ .+|..+.  ++|++|++++|+++ .+|..+..                   ..+|+.|++++|+++ .+|..+
T Consensus       207 s~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~-~LP~~l  281 (754)
T PRK15370        207 DNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKIS-CLPENL  281 (754)
T ss_pred             cCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccC-cccccc
Confidence            777776 5555443  35666666666655 44433221                   124555666666555 455433


Q ss_pred             cCCCCCcEEeccCCccc
Q 030065          156 LNLSKLEVFDAIYNVID  172 (183)
Q Consensus       156 ~~l~~L~~L~l~~N~l~  172 (183)
                      .  ++|+.|++++|+++
T Consensus       282 ~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        282 P--EELRYLSVYDNSIR  296 (754)
T ss_pred             C--CCCcEEECCCCccc
Confidence            2  35666666666666

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=4e-10  Score=81.23  Aligned_cols=101  Identities=26%  Similarity=0.338  Sum_probs=51.8

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhh-cCCCCCcEEEeccccccccc-CccccCCCCCcEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNEL-GQLRRLRFIRFGFNKLSGSI-PTWIGVLSKLQTL  140 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L  140 (183)
                      .+++.|++++|+++ .++ .+..++.|+.|++++|.|+ .+.+.+ ..+++|+.|++++|++...- -..+..+++|+.|
T Consensus        42 ~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   42 DKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             cCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            57999999999999 555 4788999999999999999 565545 46899999999999997321 1456789999999


Q ss_pred             EcccCcccCCcccc----ccCCCCCcEEecc
Q 030065          141 RLYNNSFTGPIPNS----LLNLSKLEVFDAI  167 (183)
Q Consensus       141 ~L~~n~l~~~~p~~----~~~l~~L~~L~l~  167 (183)
                      ++.+|.++ ..+..    +..+|+|+.||-.
T Consensus       119 ~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen  119 SLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             E-TT-GGG-GSTTHHHHHHHH-TT-SEETTE
T ss_pred             eccCCccc-chhhHHHHHHHHcChhheeCCE
Confidence            99999998 44442    5689999999853

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.00  E-value=3.8e-10  Score=67.36  Aligned_cols=61  Identities=28%  Similarity=0.385  Sum_probs=43.5

Q ss_pred             CCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcc
Q 030065           87 SFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSF  147 (183)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  147 (183)
                      ++|++|++++|.++...+..|..+++|++|++++|.++..-|..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3567777777777744345667777778888877777755556777788888888877764

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.95  E-value=7.6e-10  Score=95.80  Aligned_cols=62  Identities=29%  Similarity=0.391  Sum_probs=45.0

Q ss_pred             CCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065          112 RLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       112 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~  178 (183)
                      +|+.|++++|+++ .+|..   ..+|+.|++++|+++ .+|..+.++++|+.|++++|+++|.+|..
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            4555555555555 34432   235677788888887 78888889999999999999999887764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.91  E-value=2.3e-10  Score=98.33  Aligned_cols=104  Identities=29%  Similarity=0.424  Sum_probs=76.3

Q ss_pred             CCcEEEEEccCCCCcccCCc-cCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           62 HQRVTALNLSDMGLGGTIPL-HLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ..+++.|++++|.+. .+|. .+.++..|+.|++++|.++ .+|.++..++.|++|...+|++. .+| .+..++.|+.+
T Consensus       382 ~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~l  457 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVL  457 (1081)
T ss_pred             ccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEE
Confidence            367888888888877 5554 3567778888888888888 77888888888888888888887 677 67778888888


Q ss_pred             EcccCcccC-CccccccCCCCCcEEeccCCc
Q 030065          141 RLYNNSFTG-PIPNSLLNLSKLEVFDAIYNV  170 (183)
Q Consensus       141 ~L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~  170 (183)
                      |++.|+++- .+|... -.++|++||+++|.
T Consensus       458 DlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  458 DLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             ecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence            888888763 222222 22678888888885

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.90  E-value=5.9e-11  Score=101.88  Aligned_cols=108  Identities=27%  Similarity=0.389  Sum_probs=98.6

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChh-hhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPN-ELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      ..++.|.+.+|.++...-+.+.++.+|+.|++++|++. .+|. .+.++..|+.|++++|+++ .+|..+..++.|++|.
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR  436 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence            56888999999999888888999999999999999999 5665 6788999999999999999 8999999999999999


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~  174 (183)
                      ..+|.+. .+| ++..+++|+.+|++.|+++-.
T Consensus       437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             hcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence            9999999 888 889999999999999999743

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.90  E-value=1.3e-10  Score=91.74  Aligned_cols=118  Identities=25%  Similarity=0.229  Sum_probs=96.6

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecc-cccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGF-NKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      ...+.+++..|+|+...+..|..+++|+.|||+.|.|+..-|..|..+.++..|-+.+ |+|+..-...|+++.+|+.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            5678899999999955556688899999999999999988899999999888887766 889844446788899999999


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                      +.-|++.-...+.+..+++|..|.+..|.+. .|+...|.
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~  185 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQ  185 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhh-hhcccccc
Confidence            9888888555566788899999999999887 67766654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.89  E-value=5.5e-09  Score=90.65  Aligned_cols=103  Identities=22%  Similarity=0.370  Sum_probs=71.7

Q ss_pred             cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  143 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  143 (183)
                      +++.|++++|.++ .+|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|+++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence            3455555555554 3444332  25666666666666 5565543  47899999999998 6777654  589999999


Q ss_pred             cCcccCCccccccCCCCCcEEeccCCcccccCCccc
Q 030065          144 NNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMT  179 (183)
Q Consensus       144 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~  179 (183)
                      +|+++ .+|..+.  ++|+.|++++|.++ .+|...
T Consensus       292 ~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l  323 (754)
T PRK15370        292 DNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL  323 (754)
T ss_pred             CCccc-cCcccch--hhHHHHHhcCCccc-cCCccc
Confidence            99999 6776543  57899999999998 466543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=4.3e-10  Score=86.44  Aligned_cols=106  Identities=25%  Similarity=0.312  Sum_probs=61.0

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCcc------------
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTW------------  130 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~------------  130 (183)
                      ..++.+++++|.++ .+..+..-.+.++.|+++.|.+. .+. .+..+++|+.|++++|.++ .+..+            
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            34556666666665 55555555556666666666665 222 2555666666666666554 33322            


Q ss_pred             ----------ccCCCCCcEEEcccCcccCCcc--ccccCCCCCcEEeccCCcccc
Q 030065          131 ----------IGVLSKLQTLRLYNNSFTGPIP--NSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       131 ----------~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~g  173 (183)
                                +..+-+|..||+.+|+++ .+-  +.++++|.|+++.+.+|.+++
T Consensus       360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIETLSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHhhhhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccc
Confidence                      344555666666666665 221  246677777777777777764

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.84  E-value=4.9e-09  Score=58.01  Aligned_cols=40  Identities=38%  Similarity=0.760  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHHhcccCCCCCCCCCCCC--CCCCCceeeeec
Q 030065           20 TTDQSALLAFKARVVDYRSDLTNNWSIS--YPICSWVGISCG   59 (183)
Q Consensus        20 ~~~~~~l~~~k~~~~~~~~~~~~~w~~~--~~~c~w~gv~c~   59 (183)
                      .+|.++|++||..+..++...+.+|...  .++|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            5789999999999986677789999987  799999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PLN03210 Resistant to P

Probab=98.79  E-value=2.7e-08  Score=90.55  Aligned_cols=110  Identities=16%  Similarity=0.158  Sum_probs=61.3

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      .+++.|++.++.+. .++..+..+++|++++++++.....+| .+..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            34555666666555 455555556666666666554333444 3555666666666665443456666666666666666


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccC
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTT  175 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i  175 (183)
                      ++|..-+.+|..+ ++++|+.|++++|...+.+
T Consensus       689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~  720 (1153)
T PLN03210        689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSF  720 (1153)
T ss_pred             CCCCCcCccCCcC-CCCCCCEEeCCCCCCcccc
Confidence            6653333555543 4555555555555433333

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.75  E-value=4.7e-08  Score=89.08  Aligned_cols=112  Identities=23%  Similarity=0.238  Sum_probs=91.3

Q ss_pred             cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  143 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  143 (183)
                      .++.|++.++.+. .+|..+ .+.+|+.|++++|.+. .++..+..+++|+.++++++.....+|. +..+++|+.|+|+
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~  665 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS  665 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence            4777777777776 677665 4678999999999988 6788888899999999998764447775 7788999999999


Q ss_pred             cCcccCCccccccCCCCCcEEeccCCcccccCCccc
Q 030065          144 NNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMT  179 (183)
Q Consensus       144 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~  179 (183)
                      +|.....+|..+.++++|+.|++++|..-+.+|..+
T Consensus       666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i  701 (1153)
T PLN03210        666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI  701 (1153)
T ss_pred             CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence            987556899999999999999999986656777653

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.75  E-value=4.4e-10  Score=92.35  Aligned_cols=108  Identities=27%  Similarity=0.409  Sum_probs=71.0

Q ss_pred             EEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEccc
Q 030065           65 VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN  144 (183)
Q Consensus        65 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~  144 (183)
                      ++.|-+++|.++ .+|+.+..+.+|..||.+.|.+. .+|..++.+.+|+.|++..|++. .+|..+..+ .|..||++.
T Consensus       145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc  220 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC  220 (722)
T ss_pred             ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence            444555555555 55555555555666666666665 55666666666666666666666 566666533 467788888


Q ss_pred             CcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065          145 NSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       145 n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~  178 (183)
                      |++. .+|-.|.+++.|++|-|.+|.+. ..|+.
T Consensus       221 Nkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAq  252 (722)
T KOG0532|consen  221 NKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQ  252 (722)
T ss_pred             Ccee-ecchhhhhhhhheeeeeccCCCC-CChHH
Confidence            8888 78888888888888888888887 44543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.74  E-value=4e-09  Score=82.71  Aligned_cols=86  Identities=24%  Similarity=0.333  Sum_probs=39.0

Q ss_pred             CCCcEEEecCccCCCC----ChhhhcCCCCCcEEEecccccccc----cCccccCCCCCcEEEcccCcccCC----cccc
Q 030065           87 SFLVSLDVAHNNFHGH----LPNELGQLRRLRFIRFGFNKLSGS----IPTWIGVLSKLQTLRLYNNSFTGP----IPNS  154 (183)
Q Consensus        87 ~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~  154 (183)
                      ++|+.+++++|.+++.    ++..+..++.|++|++++|.+++.    ++..+...++|+.|++++|.+++.    ++..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            4455555555555422    122233344555555555555421    122233344555555555555421    1222


Q ss_pred             ccCCCCCcEEeccCCccc
Q 030065          155 LLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       155 ~~~l~~L~~L~l~~N~l~  172 (183)
                      +..+++|++|++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         217 LASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hcccCCCCEEecCCCcCc
Confidence            334455555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.72  E-value=4e-09  Score=82.73  Aligned_cols=112  Identities=27%  Similarity=0.292  Sum_probs=85.0

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCC---CcEEEecCccCCC----CChhhhcCC-CCCcEEEecccccccc----cCc
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSF---LVSLDVAHNNFHG----HLPNELGQL-RRLRFIRFGFNKLSGS----IPT  129 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~---L~~L~l~~n~l~~----~~p~~~~~l-~~L~~L~l~~n~l~~~----~p~  129 (183)
                      .++++.|+++++.+.+..+..+..+..   |++|++++|.+++    .+...+..+ ++|+.+++++|.+++.    ++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            468999999999987555555554544   9999999999873    223345566 8999999999999843    334


Q ss_pred             cccCCCCCcEEEcccCcccCC----ccccccCCCCCcEEeccCCcccc
Q 030065          130 WIGVLSKLQTLRLYNNSFTGP----IPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       130 ~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      .+..++.|++|++++|.+++.    ++..+...++|+.|++++|.+++
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  207 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD  207 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence            566778999999999999842    33445566799999999998863

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.70  E-value=2.3e-09  Score=88.27  Aligned_cols=111  Identities=30%  Similarity=0.418  Sum_probs=98.6

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ....++.++++.|+++ .+|..++.++ |+.|-+++|+++ .+|..++.++.|..|+.+.|.+. .+|..++.+.+|+.|
T Consensus       119 ~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l  194 (722)
T KOG0532|consen  119 NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDL  194 (722)
T ss_pred             hhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHH
Confidence            3467889999999999 8898888876 899999999999 88999999999999999999998 889999999999999


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~  178 (183)
                      .+..|++. .+|+++..+ .|..||++.|+++ .||-.
T Consensus       195 ~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  195 NVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             HHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchh
Confidence            99999999 889988854 5889999999999 78864

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.67  E-value=3.6e-09  Score=81.45  Aligned_cols=86  Identities=27%  Similarity=0.315  Sum_probs=67.8

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCCh----------------------hhhcCCCCCcEEEecc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLP----------------------NELGQLRRLRFIRFGF  120 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p----------------------~~~~~l~~L~~L~l~~  120 (183)
                      +.++.|++++|++. .+.. +..+++|+.||+++|.++ .+.                      ..+.++-+|..|++.+
T Consensus       307 Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~  383 (490)
T KOG1259|consen  307 PKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS  383 (490)
T ss_pred             cceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccc
Confidence            78999999999998 5554 788899999999999886 221                      2334566788899999


Q ss_pred             cccccccC--ccccCCCCCcEEEcccCcccCCccc
Q 030065          121 NKLSGSIP--TWIGVLSKLQTLRLYNNSFTGPIPN  153 (183)
Q Consensus       121 n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~  153 (183)
                      |++. .+.  ..+++++.|+++.|-+|.+. .+|.
T Consensus       384 N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~-~~vd  416 (490)
T KOG1259|consen  384 NQIE-ELDEVNHIGNLPCLETLRLTGNPLA-GSVD  416 (490)
T ss_pred             cchh-hHHHhcccccccHHHHHhhcCCCcc-ccch
Confidence            9887 332  56889999999999999998 4454

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.64  E-value=2.9e-09  Score=84.28  Aligned_cols=111  Identities=24%  Similarity=0.304  Sum_probs=92.7

Q ss_pred             EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEccc-
Q 030065           66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN-  144 (183)
Q Consensus        66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~-  144 (183)
                      ..++.++.+++ .+|..+..  ..+.++|..|+|+...|..|+.+..|+.|+|++|+|+..-|+.|.++++|..|.+.+ 
T Consensus        49 ~~VdCr~~GL~-eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   49 GIVDCRGKGLT-EVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             ceEEccCCCcc-cCcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence            56788888888 88877654  678999999999955556789999999999999999988899999999988887776 


Q ss_pred             CcccCCccc-cccCCCCCcEEeccCCcccccCCccccc
Q 030065          145 NSFTGPIPN-SLLNLSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       145 n~l~~~~p~-~~~~l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                      |+|+ .+|. .|+++.+|+.|.+.-|++. -++...|.
T Consensus       126 NkI~-~l~k~~F~gL~slqrLllNan~i~-Cir~~al~  161 (498)
T KOG4237|consen  126 NKIT-DLPKGAFGGLSSLQRLLLNANHIN-CIRQDALR  161 (498)
T ss_pred             Cchh-hhhhhHhhhHHHHHHHhcChhhhc-chhHHHHH
Confidence            8899 6665 5788999999999999887 56655554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.63  E-value=1.5e-07  Score=81.91  Aligned_cols=54  Identities=26%  Similarity=0.275  Sum_probs=35.2

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS  124 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  124 (183)
                      .+++.|.+.+|.++ .+|..   +++|++|++++|+++ .+|..   .++|+.|++++|.++
T Consensus       222 ~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~  275 (788)
T PRK15387        222 AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT  275 (788)
T ss_pred             cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh
Confidence            35788888888887 56642   467888888888888 55542   234555555555444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.60  E-value=2.9e-09  Score=73.06  Aligned_cols=112  Identities=25%  Similarity=0.343  Sum_probs=83.3

Q ss_pred             CCCcEEEEEccCCCCcccCCccCC-CCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLG-NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQT  139 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  139 (183)
                      ...+++.+++++|++. .+|+.|. +++.++.+++.+|.++ .+|.++..++.|+.++++.|.+. ..|..+..+.+|..
T Consensus        51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM  127 (177)
T ss_pred             CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence            3467888999999988 7777765 4568889999999998 88888888999999999999888 77877777888888


Q ss_pred             EEcccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065          140 LRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       140 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      |+...|.+. .+|-.+......-..++.++.+.+.-|
T Consensus       128 Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  128 LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             hcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence            888888877 666554333333334445556655433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.57  E-value=2.7e-08  Score=80.68  Aligned_cols=104  Identities=33%  Similarity=0.505  Sum_probs=76.5

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCC-CCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLS-FLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      ..++.+++.++.++ .+++....+. +|+.|++++|.+. .+|..+..++.|+.|++++|+++ .+|...+..+.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            45777888888877 6676666664 7888888888887 66666777888888888888887 6666555677788888


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNV  170 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~  170 (183)
                      +++|+++ .+|..+.....|..+.+++|.
T Consensus       193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         193 LSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             ccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            8888887 677665555667777777774

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.48  E-value=7.2e-09  Score=71.13  Aligned_cols=112  Identities=21%  Similarity=0.298  Sum_probs=90.4

Q ss_pred             cEEEEEccCCCCcccCCc---cCCCCCCCcEEEecCccCCCCChhhhcC-CCCCcEEEecccccccccCccccCCCCCcE
Q 030065           64 RVTALNLSDMGLGGTIPL---HLGNLSFLVSLDVAHNNFHGHLPNELGQ-LRRLRFIRFGFNKLSGSIPTWIGVLSKLQT  139 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~p~~~~~-l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  139 (183)
                      .+-.++++++.+- .+++   .+.+..+|+.+++++|.+. .+|+.|.. ++..+.+++++|+++ .+|..+..++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            4456777777665 3333   3555668888999999999 66776654 568999999999999 78999999999999


Q ss_pred             EEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          140 LRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       140 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      |++..|.+. ..|+.+..+.++..|+..+|.+. +||-..|
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~  143 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF  143 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh
Confidence            999999999 78888888999999999998877 6664443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.47  E-value=1.9e-07  Score=51.76  Aligned_cols=36  Identities=28%  Similarity=0.466  Sum_probs=16.2

Q ss_pred             CCcEEEecccccccccCccccCCCCCcEEEcccCccc
Q 030065          112 RLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFT  148 (183)
Q Consensus       112 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  148 (183)
                      +|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444555555554 34444444444444444444444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.41  E-value=3.7e-07  Score=50.62  Aligned_cols=36  Identities=39%  Similarity=0.531  Sum_probs=16.8

Q ss_pred             CCcEEEcccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          136 KLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       136 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      +|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3445555555554 44444445555555555555444

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.39  E-value=2.2e-07  Score=75.28  Aligned_cols=111  Identities=34%  Similarity=0.460  Sum_probs=67.9

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhc-----------------------CCCCCcEEEec
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELG-----------------------QLRRLRFIRFG  119 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-----------------------~l~~L~~L~l~  119 (183)
                      +.++.|++++|.++ .+|......+.|+.+++++|+++ .+|..+.                       .+..+..+.+.
T Consensus       163 ~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~  240 (394)
T COG4886         163 PNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELS  240 (394)
T ss_pred             ccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccC
Confidence            45666666666666 55554445556666666666665 4554433                       34444444444


Q ss_pred             ccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065          120 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       120 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~  178 (183)
                      +|++. .++..++.+++++.|++++|.++ .++. ++.+.+++.|++++|.+...+|..
T Consensus       241 ~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         241 NNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             Cceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence            44444 23455666777888888888877 5554 777788888888888777555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=1e-08  Score=86.73  Aligned_cols=103  Identities=30%  Similarity=0.424  Sum_probs=77.8

Q ss_pred             cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  143 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  143 (183)
                      .+...+++.|.+. .+..++.-+++++.|+|++|+++ .+- .+..++.|++||+++|.++ .+|.---.-..|+.|.+.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence            5667778888887 77777777888889999999887 433 7778888999999999888 666532222348888888


Q ss_pred             cCcccCCccccccCCCCCcEEeccCCccc
Q 030065          144 NNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       144 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      +|.++ .+ ..+.++.+|..||+++|-++
T Consensus       241 nN~l~-tL-~gie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  241 NNALT-TL-RGIENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             ccHHH-hh-hhHHhhhhhhccchhHhhhh
Confidence            88887 33 45778888888888888765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.29  E-value=3.5e-07  Score=80.81  Aligned_cols=106  Identities=28%  Similarity=0.389  Sum_probs=82.5

Q ss_pred             CcEEEEEccCCC--CcccCCcc-CCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcE
Q 030065           63 QRVTALNLSDMG--LGGTIPLH-LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQT  139 (183)
Q Consensus        63 ~~l~~L~l~~~~--l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  139 (183)
                      +.+++|-+.+|.  +. .++.. |..++.|+.||+++|.--+.+|..++.+-+|++|++++..++ .+|..+++++.|.+
T Consensus       545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            467888888875  44 34433 566888999999987776788988988999999999998888 88888888899999


Q ss_pred             EEcccCcccCCccccccCCCCCcEEeccCCc
Q 030065          140 LRLYNNSFTGPIPNSLLNLSKLEVFDAIYNV  170 (183)
Q Consensus       140 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~  170 (183)
                      |++..+.....+|.....+.+|++|.+..-.
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccc
Confidence            9988886554556656668888888876543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.22  E-value=2.8e-06  Score=62.00  Aligned_cols=102  Identities=23%  Similarity=0.245  Sum_probs=79.0

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccC--ccccCCCCCcEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQTL  140 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L  140 (183)
                      .....+++++|.+. .++ .|..++.|.+|.+++|+|+..-|.--..+++|+.|.+.+|.+. .+.  +.+..++.|+.|
T Consensus        42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            35678899999887 444 3778889999999999999554544445788999999999987 332  346788999999


Q ss_pred             EcccCcccCCcccc----ccCCCCCcEEeccC
Q 030065          141 RLYNNSFTGPIPNS----LLNLSKLEVFDAIY  168 (183)
Q Consensus       141 ~L~~n~l~~~~p~~----~~~l~~L~~L~l~~  168 (183)
                      .+-+|.++ ..+..    +..+|+|+.||++.
T Consensus       119 tll~Npv~-~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecCCchh-cccCceeEEEEecCcceEeehhh
Confidence            99999998 44442    56899999999765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.08  E-value=9.5e-07  Score=72.29  Aligned_cols=104  Identities=30%  Similarity=0.291  Sum_probs=45.3

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      ..++.+++.+|.++ .+...+..+.+|++|++++|.|+...  .+..++.|+.|++++|.++ .+ ..+..+..|+.+++
T Consensus        95 ~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   95 KSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLDL  169 (414)
T ss_pred             cceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hc-cCCccchhhhcccC
Confidence            34445555555544 22222344445555555555554221  2333444555555555554 22 12333445555555


Q ss_pred             ccCcccCCcccc-ccCCCCCcEEeccCCccc
Q 030065          143 YNNSFTGPIPNS-LLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       143 ~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~  172 (183)
                      ++|.++ .+... ...+.+++.+.+.+|.+.
T Consensus       170 ~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  170 SYNRIV-DIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             Ccchhh-hhhhhhhhhccchHHHhccCCchh
Confidence            555544 22221 234444444555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.01  E-value=1.9e-06  Score=70.60  Aligned_cols=106  Identities=29%  Similarity=0.417  Sum_probs=84.6

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      ..+..+.+..|.+. ..-..+..+.+++.+++.+|.|. .+...+..+++|++|++++|.++ .+. .+..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-ccc-chhhccchhhhee
Confidence            45666778888877 44444778899999999999999 55544778999999999999998 443 3567788999999


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~  174 (183)
                      .+|.++ .+. .+..+++|+.+++++|.++..
T Consensus       148 ~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~i  177 (414)
T KOG0531|consen  148 SGNLIS-DIS-GLESLKSLKLLDLSYNRIVDI  177 (414)
T ss_pred             ccCcch-hcc-CCccchhhhcccCCcchhhhh
Confidence            999998 443 466689999999999998843

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.97  E-value=1.1e-07  Score=80.82  Aligned_cols=104  Identities=26%  Similarity=0.276  Sum_probs=82.5

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhh-hcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNE-LGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      +.++.|++++|.++ .+. .+..+++|++||++.|.+. .+|.- ...+ .|+.|.+.+|.++ .+ ..+.++++|+.||
T Consensus       187 ~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-tL-~gie~LksL~~LD  260 (1096)
T KOG1859|consen  187 PALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-TL-RGIENLKSLYGLD  260 (1096)
T ss_pred             HHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-hh-hhHHhhhhhhccc
Confidence            68999999999998 444 6788999999999999999 77752 1223 4999999999998 43 3467899999999


Q ss_pred             cccCcccCCc-cccccCCCCCcEEeccCCccc
Q 030065          142 LYNNSFTGPI-PNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       142 L~~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      +++|-+.+.- -..++.+..|+.|.|.+|.+-
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9999988521 123566778999999999874

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.93  E-value=8.7e-06  Score=72.19  Aligned_cols=110  Identities=21%  Similarity=0.189  Sum_probs=85.6

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCcc--CCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN--FHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ..++.+.+-++.+. .++... ..+.|+.|-+..|.  +....+..|..++.|.+||+++|.=-+.+|..++.+-+||+|
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            34566666666665 344332 23368888899886  442334457789999999999987666999999999999999


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCcccccC
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTT  175 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i  175 (183)
                      +++...+. .+|..++++..|.+|++..+.-...+
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~  634 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI  634 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccc
Confidence            99999999 99999999999999999987654344

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=2.9e-06  Score=68.31  Aligned_cols=61  Identities=23%  Similarity=0.301  Sum_probs=28.4

Q ss_pred             CCCcEEEecccccccccC--ccccCCCCCcEEEcccCcccC-Ccccc-----ccCCCCCcEEeccCCccc
Q 030065          111 RRLRFIRFGFNKLSGSIP--TWIGVLSKLQTLRLYNNSFTG-PIPNS-----LLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       111 ~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~-~~p~~-----~~~l~~L~~L~l~~N~l~  172 (183)
                      ..|+.|+|++|++. ..+  ...+.++.|..|+++.+.++. .+|+.     ...+++|++|++..|+++
T Consensus       246 ~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  246 QTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            34455555555443 222  233445555555555555442 11221     234556666666666653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=5.8e-06  Score=66.60  Aligned_cols=86  Identities=21%  Similarity=0.143  Sum_probs=53.0

Q ss_pred             CCCCcEEEecCccCCCC-ChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCcc--ccccCCCCCc
Q 030065           86 LSFLVSLDVAHNNFHGH-LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIP--NSLLNLSKLE  162 (183)
Q Consensus        86 l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~  162 (183)
                      +++|+.|.++.+.++.. +-.....+|+|+.|++..|..-+.-.....-++.|+.|||++|++- .++  ...+.++.|+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence            34555555555555421 1123334677777777777422122233345678889999998877 455  3467888888


Q ss_pred             EEeccCCccc
Q 030065          163 VFDAIYNVID  172 (183)
Q Consensus       163 ~L~l~~N~l~  172 (183)
                      .|+++.+.++
T Consensus       275 ~Lnls~tgi~  284 (505)
T KOG3207|consen  275 QLNLSSTGIA  284 (505)
T ss_pred             hhhccccCcc
Confidence            8888888775

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.75  E-value=5.6e-05  Score=55.33  Aligned_cols=84  Identities=25%  Similarity=0.349  Sum_probs=67.0

Q ss_pred             CCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccc--cccCCCCCcEE
Q 030065           87 SFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPN--SLLNLSKLEVF  164 (183)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L  164 (183)
                      .....+|+++|.+. . -..+..++.|.+|.+.+|+++..-|..-.-+++|+.|.|.+|++. .+..  .+..+|+|++|
T Consensus        42 d~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            36788999999987 3 346788999999999999999555554445688999999999998 3322  35788999999


Q ss_pred             eccCCcccc
Q 030065          165 DAIYNVIDG  173 (183)
Q Consensus       165 ~l~~N~l~g  173 (183)
                      .+-+|.++.
T Consensus       119 tll~Npv~~  127 (233)
T KOG1644|consen  119 TLLGNPVEH  127 (233)
T ss_pred             eecCCchhc
Confidence            999998863

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.64  E-value=2.3e-05  Score=59.25  Aligned_cols=101  Identities=23%  Similarity=0.347  Sum_probs=71.7

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCc--cCCCCChhhhcCCCCCcEEEecccccccccCcc---ccCCCC
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHN--NFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTW---IGVLSK  136 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~---~~~l~~  136 (183)
                      ...++.+.+.+.+++. + ..+..+++|++|.++.|  .+.+.++.-...+++|+++++++|+++.  +..   +..+.+
T Consensus        42 ~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n  117 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN  117 (260)
T ss_pred             ccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence            4567777777777662 2 23677889999999999  6666666656667999999999999972  333   455677


Q ss_pred             CcEEEcccCcccCCccc----cccCCCCCcEEecc
Q 030065          137 LQTLRLYNNSFTGPIPN----SLLNLSKLEVFDAI  167 (183)
Q Consensus       137 L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~l~  167 (183)
                      |..|++.+|..++ +-.    .+..+++|++||-.
T Consensus       118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhhcccCCccc-cccHHHHHHHHhhhhcccccc
Confidence            8899998887764 211    24567788777643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.41  E-value=2.1e-05  Score=61.71  Aligned_cols=109  Identities=20%  Similarity=0.219  Sum_probs=67.3

Q ss_pred             CcEEEEEccCCCCcc----cCCccCCCCCCCcEEEecCccCCCCC----hhhhcCCCCCcEEEecccccccccCcc----
Q 030065           63 QRVTALNLSDMGLGG----TIPLHLGNLSFLVSLDVAHNNFHGHL----PNELGQLRRLRFIRFGFNKLSGSIPTW----  130 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~~p~~----  130 (183)
                      +.++.+.+..|++..    .+...+..+++|+.||+++|.++-..    -..++.+++|+.++++++.+.......    
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a  264 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA  264 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence            456666666666541    12233566777888888888776322    234556777888888877776332221    


Q ss_pred             c-cCCCCCcEEEcccCcccCC----ccccccCCCCCcEEeccCCcc
Q 030065          131 I-GVLSKLQTLRLYNNSFTGP----IPNSLLNLSKLEVFDAIYNVI  171 (183)
Q Consensus       131 ~-~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l  171 (183)
                      + ...++|++|.|.+|.++..    +-..+...+.|..|++++|.+
T Consensus       265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            1 2357788888888877631    112244567788888888877

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=5.2e-06  Score=63.59  Aligned_cols=99  Identities=25%  Similarity=0.330  Sum_probs=75.5

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccC--ccccCCCCCcE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQT  139 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~  139 (183)
                      ...+++|++-|+++.. +.- ..+++.|+.|.|+-|.|+..  ..+..++.|+.|+|..|.|. .+.  ..+.++++|++
T Consensus        18 l~~vkKLNcwg~~L~D-Isi-c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD-ISI-CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccH-HHH-HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            4568888999998873 322 35688999999999999843  34678899999999999987 443  34678999999


Q ss_pred             EEcccCcccCCcccc-----ccCCCCCcEEe
Q 030065          140 LRLYNNSFTGPIPNS-----LLNLSKLEVFD  165 (183)
Q Consensus       140 L~L~~n~l~~~~p~~-----~~~l~~L~~L~  165 (183)
                      |.|..|.-.|.-+..     +..+|+|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999999888765543     34577777765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.40  E-value=8e-05  Score=64.64  Aligned_cols=109  Identities=17%  Similarity=0.194  Sum_probs=76.4

Q ss_pred             CCcEEEEEccCCCCcc-cCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccC--ccccCCCCCc
Q 030065           62 HQRVTALNLSDMGLGG-TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQ  138 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~  138 (183)
                      .|.+++|.+.+..+.. .+..-...+++|..||+++..++. + .+++.+++|+.|.+.+=.+. ...  ..+..+++|+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKLR  223 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCC-chhhHHHHhcccCCC
Confidence            4788888888877642 222334567888999999998883 3 67888888888887766665 222  2456789999


Q ss_pred             EEEcccCcccCCccc-------cccCCCCCcEEeccCCccccc
Q 030065          139 TLRLYNNSFTGPIPN-------SLLNLSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       139 ~L~L~~n~l~~~~p~-------~~~~l~~L~~L~l~~N~l~g~  174 (183)
                      +||+|..... ..+.       .-..+|+|+.||.|++.+.+.
T Consensus       224 vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  224 VLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             eeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            9999887655 2221       123588999999998877643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.35  E-value=0.00012  Score=55.34  Aligned_cols=91  Identities=18%  Similarity=0.226  Sum_probs=64.8

Q ss_pred             CCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEeccc--ccccccCccccCCCCCcEEEcccCcccCCcccc--
Q 030065           79 IPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFN--KLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNS--  154 (183)
Q Consensus        79 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--  154 (183)
                      +......+..|+.+.+.+..++ . -..+..+++|+.|.++.|  ++.+.++.....+++|++|++++|++. . +..  
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t-~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-T-LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhcccee-e-cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccc
Confidence            4443444556666666666665 2 234667899999999999  666666655566799999999999987 2 333  


Q ss_pred             -ccCCCCCcEEeccCCcccc
Q 030065          155 -LLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       155 -~~~l~~L~~L~l~~N~l~g  173 (183)
                       +..+.+|..|++.+|..++
T Consensus       111 pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhhcchhhhhcccCCccc
Confidence             4567788899999887653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.22  E-value=0.00025  Score=55.91  Aligned_cols=110  Identities=21%  Similarity=0.247  Sum_probs=53.1

Q ss_pred             CcEEEEEccCCCCcccCCcc----CCCCCCCcEEEecCccCCCC-------------ChhhhcCCCCCcEEEeccccccc
Q 030065           63 QRVTALNLSDMGLGGTIPLH----LGNLSFLVSLDVAHNNFHGH-------------LPNELGQLRRLRFIRFGFNKLSG  125 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~-------------~p~~~~~l~~L~~L~l~~n~l~~  125 (183)
                      +++++|+++.|.+...-++.    +.....|++|.+.+|.+...             .....+.-+.|+++...+|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            46777777777765333332    23455667777777666411             01112234556666666666541


Q ss_pred             c----cCccccCCCCCcEEEcccCcccC--C--ccccccCCCCCcEEeccCCccc
Q 030065          126 S----IPTWIGVLSKLQTLRLYNNSFTG--P--IPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       126 ~----~p~~~~~l~~L~~L~L~~n~l~~--~--~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      .    +...|...+.|+.+.+.+|.+.-  .  +-..+.++++|+.||+..|.|+
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            1    11223334455555555554431  0  0112344555555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.15  E-value=0.0014  Score=53.45  Aligned_cols=31  Identities=26%  Similarity=0.264  Sum_probs=17.9

Q ss_pred             CCcEEEcccCcccCCccccccCCCCCcEEeccCC
Q 030065          136 KLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN  169 (183)
Q Consensus       136 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N  169 (183)
                      +|++|++++|... .+|..+.  .+|+.|+++.|
T Consensus       157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            5666777666554 3443332  46777777655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.04  E-value=0.00017  Score=62.60  Aligned_cols=107  Identities=26%  Similarity=0.307  Sum_probs=78.0

Q ss_pred             CcEEEEEccCCCCc-ccCCccCC-CCCCCcEEEecCccCCCC-ChhhhcCCCCCcEEEecccccccccCccccCCCCCcE
Q 030065           63 QRVTALNLSDMGLG-GTIPLHLG-NLSFLVSLDVAHNNFHGH-LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQT  139 (183)
Q Consensus        63 ~~l~~L~l~~~~l~-~~~~~~l~-~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  139 (183)
                      .++++|+++|...- ...|..++ .+|+|+.|.+.+-.+... ...-...+++|..||+++.+++ .+ ..++.+++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence            57889999886532 22333333 478999999998777522 2234457899999999999998 44 66889999999


Q ss_pred             EEcccCcccC-CccccccCCCCCcEEeccCCcc
Q 030065          140 LRLYNNSFTG-PIPNSLLNLSKLEVFDAIYNVI  171 (183)
Q Consensus       140 L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l  171 (183)
                      |.+.+=.+.. ..-..+.++++|++||+|....
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            9988766662 1123578999999999998654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.74  E-value=0.013  Score=39.58  Aligned_cols=112  Identities=16%  Similarity=0.177  Sum_probs=60.8

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      .+++.+.+.. .+...-...|...+.|+.+.+..+ +...-...+..++.++.+.+.. .+...-...|..+++|+.+++
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            4688888875 566444455777778999999886 6633444677787899999976 443233456777899999999


Q ss_pred             ccCcccCCccc-cccCCCCCcEEeccCCcccccCCcccccC
Q 030065          143 YNNSFTGPIPN-SLLNLSKLEVFDAIYNVIDGTTTKMTFID  182 (183)
Q Consensus       143 ~~n~l~~~~p~-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~  182 (183)
                      ..+ +. .++. .+.+. +|+.+.+.. .+. .|+...|.+
T Consensus        89 ~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~  124 (129)
T PF13306_consen   89 PSN-IT-EIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKN  124 (129)
T ss_dssp             TTT--B-EEHTTTTTT--T--EEE-TT-B-S-S----GGG-
T ss_pred             Ccc-cc-EEchhhhcCC-CceEEEECC-Ccc-EECCccccc
Confidence            776 44 3433 35555 888888876 444 577777765

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.70  E-value=0.006  Score=49.83  Aligned_cols=51  Identities=20%  Similarity=0.326  Sum_probs=24.8

Q ss_pred             cEEEEEccCCCCcccCCccCCCCCCCcEEEecC-ccCCCCChhhhcCCCCCcEEEeccc
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAH-NNFHGHLPNELGQLRRLRFIRFGFN  121 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n  121 (183)
                      +++.|+++++.++ .+| .+.  .+|+.|.+++ +.++ .+|..+  .++|+.|++++|
T Consensus        53 ~l~~L~Is~c~L~-sLP-~LP--~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         53 ASGRLYIKDCDIE-SLP-VLP--NELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             CCCEEEeCCCCCc-ccC-CCC--CCCcEEEccCCCCcc-cCCchh--hhhhhheEccCc
Confidence            4556666666555 444 121  2456666554 2332 444333  235556665555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.00087  Score=52.15  Aligned_cols=86  Identities=23%  Similarity=0.234  Sum_probs=54.4

Q ss_pred             CCCCcEEEecCccCCC--CChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCC-ccccccCCCCCc
Q 030065           86 LSFLVSLDVAHNNFHG--HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGP-IPNSLLNLSKLE  162 (183)
Q Consensus        86 l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~  162 (183)
                      .+.++.+|+.+|.|+.  .+-.-+.++|.|++|+++.|.+...+...-....+|++|.|.+..+... .-..+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4567788888888872  1222345688888888888887633322113456788888877766532 223345677777


Q ss_pred             EEeccCCcc
Q 030065          163 VFDAIYNVI  171 (183)
Q Consensus       163 ~L~l~~N~l  171 (183)
                      .|.++.|++
T Consensus       150 elHmS~N~~  158 (418)
T KOG2982|consen  150 ELHMSDNSL  158 (418)
T ss_pred             hhhhccchh
Confidence            777777754

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.47  E-value=0.0012  Score=30.64  Aligned_cols=17  Identities=24%  Similarity=0.204  Sum_probs=9.8

Q ss_pred             CcEEeccCCcccccCCcc
Q 030065          161 LEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       161 L~~L~l~~N~l~g~ip~~  178 (183)
                      |++|++++|+++ .||+.
T Consensus         2 L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             ESEEEETSSEES-EEGTT
T ss_pred             ccEEECCCCcCE-eCChh
Confidence            455666666665 55554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.44  E-value=0.0014  Score=30.45  Aligned_cols=18  Identities=44%  Similarity=0.672  Sum_probs=8.8

Q ss_pred             CcEEEcccCcccCCccccc
Q 030065          137 LQTLRLYNNSFTGPIPNSL  155 (183)
Q Consensus       137 L~~L~L~~n~l~~~~p~~~  155 (183)
                      |++|++++|+++ .+|..+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555555 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.21  E-value=0.012  Score=45.56  Aligned_cols=106  Identities=22%  Similarity=0.326  Sum_probs=58.5

Q ss_pred             CcEEEEEccCCCCcccCCcc----CCCCCCCcEEEecCccCCCCChh-------------hhcCCCCCcEEEeccccccc
Q 030065           63 QRVTALNLSDMGLGGTIPLH----LGNLSFLVSLDVAHNNFHGHLPN-------------ELGQLRRLRFIRFGFNKLSG  125 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~p~-------------~~~~l~~L~~L~l~~n~l~~  125 (183)
                      ++++.++++.|.+....|+.    +..-+.|++|.+++|.+-..--.             ....-|.|++.....|++. 
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-  170 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-  170 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence            56677777777766555544    33445667777777765311111             1123456666666666664 


Q ss_pred             ccCcc-----ccCCCCCcEEEcccCcccCCcccc--------ccCCCCCcEEeccCCccc
Q 030065          126 SIPTW-----IGVLSKLQTLRLYNNSFTGPIPNS--------LLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       126 ~~p~~-----~~~l~~L~~L~L~~n~l~~~~p~~--------~~~l~~L~~L~l~~N~l~  172 (183)
                      ..+..     +..-..|+++.+.+|.|.   |..        +..+.+|..||+..|-++
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence            22311     222245666666666665   332        234567777777777665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.20  E-value=0.0038  Score=30.05  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=16.4

Q ss_pred             CCCCcEEeccCCcccccCCccccc
Q 030065          158 LSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       158 l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                      +++|+.|++++|.++ .||..+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            356777777777777 66777764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.20  E-value=0.0038  Score=30.05  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=16.4

Q ss_pred             CCCCcEEeccCCcccccCCccccc
Q 030065          158 LSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       158 l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                      +++|+.|++++|.++ .||..+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            356777777777777 66777764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.93  E-value=0.00013  Score=54.77  Aligned_cols=85  Identities=25%  Similarity=0.215  Sum_probs=73.0

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ...+++.||++.|.+. .+...+..++.++.++++.|++. ..|..+.+...+..+++..|.++ ..|-+++..+.++.+
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            3478899999999887 66777777888999999999998 88988888888888888888888 788889999999999


Q ss_pred             EcccCccc
Q 030065          141 RLYNNSFT  148 (183)
Q Consensus       141 ~L~~n~l~  148 (183)
                      ++..|.+.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            99888876

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.55  E-value=0.0098  Score=25.67  Aligned_cols=11  Identities=55%  Similarity=0.703  Sum_probs=3.2

Q ss_pred             CcEEEcccCcc
Q 030065          137 LQTLRLYNNSF  147 (183)
Q Consensus       137 L~~L~L~~n~l  147 (183)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33333333333

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.52  E-value=0.00045  Score=53.73  Aligned_cols=57  Identities=19%  Similarity=0.197  Sum_probs=29.5

Q ss_pred             cEEEEEccCCCCcc-cCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecc
Q 030065           64 RVTALNLSDMGLGG-TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGF  120 (183)
Q Consensus        64 ~l~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  120 (183)
                      +++++|+++..++. .+..-+..+.+|+.|.+.++++...+-.++.+-.+|+.+++++
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm  243 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM  243 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence            46666666665542 1222233445566666666666555544554444555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.51  E-value=0.046  Score=36.77  Aligned_cols=95  Identities=20%  Similarity=0.203  Sum_probs=56.5

Q ss_pred             cCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccc-cccCCCC
Q 030065           82 HLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPN-SLLNLSK  160 (183)
Q Consensus        82 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~  160 (183)
                      .|.+.++|+.+.+.. .+...-...|..++.|+.+.+..+ +...-...|..+++++.+.+.. .+. .++. .+..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence            356677899999885 466344456788889999999876 6533345677888999999976 443 2333 4566899


Q ss_pred             CcEEeccCCcccccCCcccccC
Q 030065          161 LEVFDAIYNVIDGTTTKMTFID  182 (183)
Q Consensus       161 L~~L~l~~N~l~g~ip~~~~~~  182 (183)
                      |+.+++..+ +. .++...|.+
T Consensus        83 l~~i~~~~~-~~-~i~~~~f~~  102 (129)
T PF13306_consen   83 LKNIDIPSN-IT-EIGSSSFSN  102 (129)
T ss_dssp             ECEEEETTT--B-EEHTTTTTT
T ss_pred             ccccccCcc-cc-EEchhhhcC
Confidence            999999775 44 566666653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.09  E-value=0.00036  Score=52.46  Aligned_cols=87  Identities=14%  Similarity=0.119  Sum_probs=75.1

Q ss_pred             CCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCc
Q 030065           83 LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLE  162 (183)
Q Consensus        83 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  162 (183)
                      +..+...+.||++.|++- ..-..++.++.+..|+++.|++. .+|..++....++.+++..|.++ ..|..++..+.++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            455667889999999886 45556777889999999999998 78888888889999999999998 8899999999999


Q ss_pred             EEeccCCccc
Q 030065          163 VFDAIYNVID  172 (183)
Q Consensus       163 ~L~l~~N~l~  172 (183)
                      ++++-.|.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            9999988764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.85  E-value=0.0063  Score=47.53  Aligned_cols=69  Identities=23%  Similarity=0.219  Sum_probs=31.4

Q ss_pred             ceeeeecC-CCCcEEEEEccCCCCcccCCccC-CCCCCCcEEEecCccCCCCCh-hhhcCCCCCcEEEecccc
Q 030065           53 WVGISCGS-RHQRVTALNLSDMGLGGTIPLHL-GNLSFLVSLDVAHNNFHGHLP-NELGQLRRLRFIRFGFNK  122 (183)
Q Consensus        53 w~gv~c~~-~~~~l~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~  122 (183)
                      |.-+.|.- ..++++.|+++.|++...+. .+ ..+.+|+.|-+.+..+..... ..+..+|.++.+.++.|.
T Consensus        86 WseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen   86 WSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             HHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence            44444432 34555666666655552222 12 234455555555555442222 223344555555555553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.80  E-value=0.0015  Score=50.47  Aligned_cols=87  Identities=20%  Similarity=0.210  Sum_probs=67.8

Q ss_pred             CCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccc--cccCCCCCcE
Q 030065           86 LSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPN--SLLNLSKLEV  163 (183)
Q Consensus        86 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~  163 (183)
                      +.+.++|+.-++.++ .+ .-...++.|++|.|+-|+++ .+ ..+..+++|+.|+|..|.|. .+-+  .+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DI-SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-HH-HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            446677788888877 33 23457999999999999998 44 34778999999999999998 4433  4679999999


Q ss_pred             EeccCCcccccCCc
Q 030065          164 FDAIYNVIDGTTTK  177 (183)
Q Consensus       164 L~l~~N~l~g~ip~  177 (183)
                      |-|..|.=.|.-+.
T Consensus        93 LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQ  106 (388)
T ss_pred             HhhccCCcccccch
Confidence            99999987766543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.07  E-value=0.045  Score=26.15  Aligned_cols=19  Identities=32%  Similarity=0.597  Sum_probs=11.3

Q ss_pred             CCCcEEEcccCcccCCcccc
Q 030065          135 SKLQTLRLYNNSFTGPIPNS  154 (183)
Q Consensus       135 ~~L~~L~L~~n~l~~~~p~~  154 (183)
                      ++|+.|+|++|+++ .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45666666666666 55543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.07  E-value=0.045  Score=26.15  Aligned_cols=19  Identities=32%  Similarity=0.597  Sum_probs=11.3

Q ss_pred             CCCcEEEcccCcccCCcccc
Q 030065          135 SKLQTLRLYNNSFTGPIPNS  154 (183)
Q Consensus       135 ~~L~~L~L~~n~l~~~~p~~  154 (183)
                      ++|+.|+|++|+++ .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45666666666666 55543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.65  E-value=0.055  Score=41.96  Aligned_cols=109  Identities=23%  Similarity=0.276  Sum_probs=73.5

Q ss_pred             CcEEEEEccCCCCccc----CCccCCCCCCCcEEEecCccCC---CCCh-------hhhcCCCCCcEEEecccccccccC
Q 030065           63 QRVTALNLSDMGLGGT----IPLHLGNLSFLVSLDVAHNNFH---GHLP-------NELGQLRRLRFIRFGFNKLSGSIP  128 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~---~~~p-------~~~~~l~~L~~L~l~~n~l~~~~p  128 (183)
                      ..++.+++++|.+...    +...+.+-.+|+..++++-...   ..++       +.+-+++.|+..+++.|-+.-..|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            5678899999987632    3334555667777777654221   1222       244568999999999998876666


Q ss_pred             cc----ccCCCCCcEEEcccCcccCCccc-----cc---------cCCCCCcEEeccCCccc
Q 030065          129 TW----IGVLSKLQTLRLYNNSFTGPIPN-----SL---------LNLSKLEVFDAIYNVID  172 (183)
Q Consensus       129 ~~----~~~l~~L~~L~L~~n~l~~~~p~-----~~---------~~l~~L~~L~l~~N~l~  172 (183)
                      ..    +.+-..|.+|.|++|.+. .+..     .+         ..-|.|+.+....|++.
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            43    456678999999999876 3322     11         24577888888888875

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.30  E-value=0.0061  Score=47.63  Aligned_cols=87  Identities=22%  Similarity=0.184  Sum_probs=63.9

Q ss_pred             CCcEEEecCccCCCC-ChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccC-cccCC-ccccccCCCCCcEE
Q 030065           88 FLVSLDVAHNNFHGH-LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN-SFTGP-IPNSLLNLSKLEVF  164 (183)
Q Consensus        88 ~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L  164 (183)
                      .++++|+++..|+.. .-.-+..+..|+.|.+.++++.+.+-..+..-.+|+.|+++.+ .++.. ..-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            589999999888732 2234567889999999999999888778888889999999865 45521 11124678888888


Q ss_pred             eccCCccccc
Q 030065          165 DAIYNVIDGT  174 (183)
Q Consensus       165 ~l~~N~l~g~  174 (183)
                      +++-+.+...
T Consensus       266 NlsWc~l~~~  275 (419)
T KOG2120|consen  266 NLSWCFLFTE  275 (419)
T ss_pred             CchHhhccch
Confidence            8888876533

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.30  E-value=0.25  Score=22.94  Aligned_cols=15  Identities=33%  Similarity=0.390  Sum_probs=8.7

Q ss_pred             CCCcEEeccCCcccc
Q 030065          159 SKLEVFDAIYNVIDG  173 (183)
Q Consensus       159 ~~L~~L~l~~N~l~g  173 (183)
                      ++|+.|++++|.|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            566777777777654

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.34  E-value=0.42  Score=23.04  Aligned_cols=17  Identities=12%  Similarity=0.220  Sum_probs=10.3

Q ss_pred             CCcEEeccCCcccccCCc
Q 030065          160 KLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       160 ~L~~L~l~~N~l~g~ip~  177 (183)
                      +|+.|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4566666666666 5554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.78  E-value=0.11  Score=38.32  Aligned_cols=81  Identities=21%  Similarity=0.253  Sum_probs=42.3

Q ss_pred             cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCC-Chhhhc-CCCCCcEEEeccc-ccccccCccccCCCCCcEE
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGH-LPNELG-QLRRLRFIRFGFN-KLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~-~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L  140 (183)
                      .++.++-++..+...--+.+..++.++.|.+.++.--+. .-+-++ -.++|+.|++++| +|+...-..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            466667776666644445555666666666655432100 000011 2456777777655 4554434455566666666


Q ss_pred             Eccc
Q 030065          141 RLYN  144 (183)
Q Consensus       141 ~L~~  144 (183)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.38  E-value=0.15  Score=37.72  Aligned_cols=81  Identities=19%  Similarity=0.154  Sum_probs=55.5

Q ss_pred             CCcEEEecCccCCCCChhhhcCCCCCcEEEeccccccc-ccCcccc-CCCCCcEEEcccC-cccCCccccccCCCCCcEE
Q 030065           88 FLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG-SIPTWIG-VLSKLQTLRLYNN-SFTGPIPNSLLNLSKLEVF  164 (183)
Q Consensus        88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~-~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L  164 (183)
                      .++.++-++..|..+--..+..++.++.|.+.++.--+ .--..++ ..++|+.|++++| .||..=-..+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            57889999999987777778888888888888775321 1111122 3588999999988 4663222345677777777


Q ss_pred             eccC
Q 030065          165 DAIY  168 (183)
Q Consensus       165 ~l~~  168 (183)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7654

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.75  E-value=1  Score=21.67  Aligned_cols=14  Identities=36%  Similarity=0.396  Sum_probs=10.1

Q ss_pred             CCCcEEeccCCccc
Q 030065          159 SKLEVFDAIYNVID  172 (183)
Q Consensus       159 ~~L~~L~l~~N~l~  172 (183)
                      .+|+.|+++.|.|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            56777777777775

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=80.73  E-value=1.4  Score=21.39  Aligned_cols=14  Identities=21%  Similarity=0.247  Sum_probs=10.0

Q ss_pred             CCCcEEeccCCccc
Q 030065          159 SKLEVFDAIYNVID  172 (183)
Q Consensus       159 ~~L~~L~l~~N~l~  172 (183)
                      ++|++|+|++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            45777777777774

>PF15240 Pro-rich: Proline-rich

Probab=80.69  E-value=0.99  Score=32.56  Aligned_cols=23  Identities=39%  Similarity=0.488  Sum_probs=18.9

Q ss_pred             ChhHHHHHHHhhhhccCCChHHH
Q 030065            1 MLLVQYSIASLAMTTLSNLTTDQ   23 (183)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~   23 (183)
                      |||||+..|++|.+++.....|+
T Consensus         1 MLlVLLSvALLALSSAQ~~dEdv   23 (179)
T PF15240_consen    1 MLLVLLSVALLALSSAQSTDEDV   23 (179)
T ss_pred             ChhHHHHHHHHHhhhcccccccc
Confidence            89999999999998887766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-12
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-08

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 58/120 (48%)
Query: 58  CGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR 117
           C +    +  L L + G  G IP  L N S LVSL ++ N   G +P+ LG L +LR ++
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK 177
              N L G IP  +  +  L+TL L  N  TG IP+ L N + L       N + G   K
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 58/120 (48%)
Query: 58  CGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR 117
           C +    +  L L + G  G IP  L N S LVSL ++ N   G +P+ LG L +LR ++
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK 177
              N L G IP  +  +  L+TL L  N  TG IP+ L N + L       N + G   K
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 75  LGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVL 134
           + G IP  L  +  LV+LD ++N   G LP  +  L  L  I F  N++SG+IP   G  
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 135 SKLQT-LRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT 176
           SKL T + +  N  TG IP +  NL+ L   D   N+++G  +
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  149 bits (379), Expect = 7e-45
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 5/159 (3%)

Query: 21  TDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQ--RVTALNLSDMGLGGT 78
            D+ ALL  K  + +  +  +   +      +W+G+ C +  Q  RV  L+LS + L   
Sbjct: 6   QDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65

Query: 79  --IPLHLGNLSFLVSLDVAH-NNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLS 135
             IP  L NL +L  L +   NN  G +P  + +L +L ++      +SG+IP ++  + 
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 136 KLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
            L TL    N+ +G +P S+ +L  L       N I G 
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 98.4 bits (246), Expect = 2e-25
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 2/109 (1%)

Query: 65  VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
            T++ +S   L G IP    NL+ L  +D++ N   G      G  +  + I    N L+
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
             +   +G+   L  L L NN   G +P  L  L  L   +  +N + G
Sbjct: 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 96.1 bits (240), Expect = 1e-24
 Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLV-SLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
             +      + G IP   G+ S L  S+ ++ N   G +P     L  L F+    N L 
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
           G      G     Q + L  NS    +   +     L   D   N I GT
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGT 259

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 89.9 bits (224), Expect = 3e-22
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             ++LS   L G   +  G+      + +A N+    L  ++G  + L  +    N++ G
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG 258

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
           ++P  +  L  L +L +  N+  G IP    NL + +V     N
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.9 bits (128), Expect = 8e-09
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L+L +  + GT+P  L  L FL SL+V+ NN  G +P   G L+R     +  NK   
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305

Query: 126 SIP 128
             P
Sbjct: 306 GSP 308

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  130 bits (330), Expect = 8e-36
 Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 11/171 (6%)

Query: 10  SLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALN 69
           S   +   +L  +   L++FK  + D   +L  +WS +   C++ G++C  R  +VT+++
Sbjct: 1   SFQASPSQSLYREIHQLISFKDVLPD--KNLLPDWSSNKNPCTFDGVTC--RDDKVTSID 56

Query: 70  LSDMGL---GGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS 126
           LS   L      +   L +L+ L SL +++++ +G +         L  +    N LSG 
Sbjct: 57  LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGP 115

Query: 127 IPT--WIGVLSKLQTLRLYNNSFTGPIPNS-LLNLSKLEVFDAIYNVIDGT 174
           + T   +G  S L+ L + +N+   P   S  L L+ LEV D   N I G 
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  111 bits (280), Expect = 4e-29
 Identities = 40/109 (36%), Positives = 54/109 (49%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L L    L G IP  L  +  L +L +  N+  G +P+ L     L +I    N+L+G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
            IP WIG L  L  L+L NNSF+G IP  L +   L   D   N+ +GT
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  111 bits (279), Expect = 6e-29
 Identities = 40/107 (37%), Positives = 54/107 (50%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           L L + G  G IP  L N S LVSL ++ N   G +P+ LG L +LR ++   N L G I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
           P  +  +  L+TL L  N  TG IP+ L N + L       N + G 
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  106 bits (266), Expect = 4e-27
 Identities = 37/104 (35%), Positives = 52/104 (50%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
            +L+LS   L GTIP  LG+LS L  L +  N   G +P EL  ++ L  +   FN L+G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
            IP+ +   + L  + L NN  TG IP  +  L  L +     N
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  106 bits (266), Expect = 4e-27
 Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 39  DLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN 98
           DL+ N SIS                 +  L +S   + G + +       L  LDV+ NN
Sbjct: 157 DLSAN-SISGANVVG--WVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNN 211

Query: 99  FHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNL 158
           F   +P  LG    L+ +    NKLSG     I   ++L+ L + +N F GPIP     L
Sbjct: 212 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 268

Query: 159 SKLEVFDAIYNVIDGT 174
             L+      N   G 
Sbjct: 269 KSLQYLSLAENKFTGE 284

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (253), Expect = 2e-25
 Identities = 30/96 (31%), Positives = 44/96 (45%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L L    L G IP  L N + L  + +++N   G +P  +G+L  L  ++   N  SG
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKL 161
           +IP  +G    L  L L  N F G IP ++   S  
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 98.8 bits (247), Expect = 1e-24
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 9/140 (6%)

Query: 39  DLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN 98
            L  N   +  I  ++  +C +    +T L+LS     G +P   G+ S L SL ++ NN
Sbjct: 275 SLAEN-KFTGEIPDFLSGACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

Query: 99  FHGHLPNE-LGQLRRLRFIRFGFNKLSGSIPTWIGVLS-KLQTLRLYNNSFTGPIPNSLL 156
           F G LP + L ++R L+ +   FN+ SG +P  +  LS  L TL L +N+F+GPI  +L 
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389

Query: 157 N--LSKLEVFDAIYNVIDGT 174
               + L+      N   G 
Sbjct: 390 QNPKNTLQELYLQNNGFTGK 409

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 97.7 bits (244), Expect = 3e-24
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNEL-GQLRRLRFIRFGFNKLS 124
             LN+S     G IP     L  L  L +A N F G +P+ L G    L  +    N   
Sbjct: 250 KLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIP-NSLLNLSKLEVFDAIYNVIDGT 174
           G++P + G  S L++L L +N+F+G +P ++LL +  L+V D  +N   G 
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 97.3 bits (243), Expect = 4e-24
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 66  TALNLSDMGLGGTIPLHL-GNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
             L+L++    G IP  L G    L  LD++ N+F+G +P   G    L  +    N  S
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 125 GSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLLNLS-KLEVFDAIYNVIDGT 174
           G +P   +  +  L+ L L  N F+G +P SL NLS  L   D   N   G 
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 7e-24
 Identities = 33/109 (30%), Positives = 52/109 (47%)

Query: 65  VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
               N++    GG       N   ++ LD+++N   G++P E+G +  L  +  G N +S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
           GSIP  +G L  L  L L +N   G IP ++  L+ L   D   N + G
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.0 bits (237), Expect = 3e-23
 Identities = 28/107 (26%), Positives = 44/107 (41%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
              + +   G     L  LS     ++    + GH          + F+   +N LSG I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
           P  IG +  L  L L +N  +G IP+ + +L  L + D   N +DG 
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.4 bits (220), Expect = 5e-21
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 4/107 (3%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           ++LS+  L G IP  +G L  L  L +++N+F G++P ELG  R L ++    N  +G+I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
           P  +   S      +  N   G     + N    +      N+++  
Sbjct: 555 PAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.4 bits (194), Expect = 2e-17
 Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 2/100 (2%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHN--NFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             ++   + G   +++ N         A N   F G    +L +L              G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
                      +  L +  N  +G IP  + ++  L + +
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.0 bits (154), Expect = 3e-12
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             LNL    + G+IP  +G+L  L  LD++ N   G +P  +  L  L  I    N LSG
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718

Query: 126 SIPTWIGVLSKLQTLRLYNNS 146
            IP  +G        +  NN 
Sbjct: 719 PIPE-MGQFETFPPAKFLNNP 738

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.8 bits (231), Expect = 1e-22
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 38  SDLTNNWSISYPICSWV---GISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDV 94
           +    NW+ +  +  W    G+S  S   RVT L+L   G  G +P  +G L+ L  L +
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLAL 112

Query: 95  AHNNFHG----HLPNELGQLRRLRFIRFGFNKLSGSIPTWIG--VLSKLQTLRLYNNSFT 148
             +          P  +         +        +   +      S L    + ++   
Sbjct: 113 GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172

Query: 149 GPIPNSLLNLSKLEVFDAIYNVIDG 173
             I  S     K      + N I  
Sbjct: 173 KSIKKSSRITLKDTQIGQLSNNITF 197

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.2 bits (188), Expect = 9e-17
 Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 39  DLTNNW--SISYPICSWVGISCGSRHQRVTALNLSDMGL-GGTIPLHLGNLSFLVSLDVA 95
           ++  N   S       W  ++     +++  + +    L    +   L  +  L  L+  
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 96  HNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG-PIPNS 154
           +N   G      G   +L  +   +N+++     + G   +++ L   +N     P    
Sbjct: 339 YNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397

Query: 155 LLNLSKLEVFDAIYNVIDG 173
             ++S +   D  YN I  
Sbjct: 398 AKSVSVMSAIDFSYNEIGS 416

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 3e-16
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 10/117 (8%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFH--------GHLPNELGQLRRLRFIR 117
           T + + +      +P  L  L  +  ++VA N                +     +++ I 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 118 FGFNKL-SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
            G+N L +  + T +  + KL  L    N   G +P +  +  KL   +  YN I  
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE 367

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 20/121 (16%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG-- 125
             ++      +I            +    NN    +   + +L +LR    G +      
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 126 -----------------SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIY 168
                            +       L  L  + +YN      +P  L  L ++++ +   
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

Query: 169 N 169
           N
Sbjct: 283 N 283

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 14/101 (13%)

Query: 79  IPLHLGNLSFLVSLDVAHNNFHG-------HLPNELGQLRRLRFIRFGFNKLSGSIPTWI 131
                 ++S + ++D ++N            L     +   +  I    N++S       
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453

Query: 132 GVLSKLQTLRLYNNSFTG-------PIPNSLLNLSKLEVFD 165
              S L ++ L  N  T            +  N   L   D
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 5e-13
 Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 10/110 (9%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSL------DVAHNNFHGHLPNELGQLRRLRFIRFG 119
             ++LS        P    N S L         D   N      P  +     L  ++ G
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 120 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
            N +   +   I     +  L + +N       + +    +  ++   Y+
Sbjct: 575 SNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 8e-13
 Identities = 13/129 (10%), Positives = 34/129 (26%), Gaps = 28/129 (21%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGH-------------------LPNELG 108
           +      +   +   +  L+ L    + ++ F                         +  
Sbjct: 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246

Query: 109 QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFT--------GPIPNSLLNLSK 160
            L+ L  +          +PT++  L ++Q + +  N                      K
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 161 LEVFDAIYN 169
           +++    YN
Sbjct: 307 IQIIYIGYN 315

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 12/97 (12%), Positives = 26/97 (26%), Gaps = 3/97 (3%)

Query: 68  LNLSDMGLGGTIPLHLGNLSF--LVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
                M    T   +     F  L+   +  +     +        +   I    N ++ 
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT- 196

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLE 162
            +   +  L+KL+   + N+ F              E
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE 233

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 11/111 (9%)

Query: 66  TALNLSDMGLGGTIP-LHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFG----- 119
           T+++L    L           L +LV +D+++N+F    P +      L+          
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA 549

Query: 120 -FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
             N+     P  I +   L  L++ +N     +   +     + V D   N
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDN 597

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 16/115 (13%), Positives = 29/115 (25%), Gaps = 10/115 (8%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG-- 125
           +   D      +         + S+++++N               L  I    N L+   
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 126 -----SIPTWIGVLSKLQTLRLYNNSFTGPIPNSL--LNLSKLEVFDAIYNVIDG 173
                           L ++ L  N  T  + +      L  L   D  YN    
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 8e-12
 Identities = 20/147 (13%), Positives = 40/147 (27%), Gaps = 7/147 (4%)

Query: 22  DQSALLAFKARVVDYRSDLTNNW-SISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIP 80
                L+  A  +     L   W +++    S  G                DM  G    
Sbjct: 17  IVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGT-QPGANWNFNKELDM-WGAQPG 74

Query: 81  LHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG----SIPTWIGVLSK 136
           + L +   +  L +      G +P+ +GQL  L  +  G +          P  I     
Sbjct: 75  VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 137 LQTLRLYNNSFTGPIPNSLLNLSKLEV 163
            +  +     +     +        ++
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDL 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 19/109 (17%), Positives = 32/109 (29%)

Query: 65  VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
              L+LS   L         +   L  LD++              L  L  +    N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
                    LS LQ L     +        + +L  L+  +  +N+I  
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 1/109 (0%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHL-PNELGQLRRLRFIRFGFNKLS 124
             L++S              LS L  L +A N+F  +  P+   +LR L F+     +L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
              PT    LS LQ L + +N+F          L+ L+V D   N I  
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.5 bits (181), Expect = 8e-16
 Identities = 19/109 (17%), Positives = 28/109 (25%), Gaps = 2/109 (1%)

Query: 68  LNLSDMGLGGTIPLH-LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS 126
           L ++               L  L  LD++        P     L  L+ +    N     
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 127 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNL-SKLEVFDAIYNVIDGT 174
                  L+ LQ L    N         L +  S L   +   N    T
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 1/107 (0%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           L+LS   +         +LS L +L +  N            L  L+ +      L+   
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 128 PTWIGVLSKLQTLRLYNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDG 173
              IG L  L+ L + +N      +P    NL+ LE  D   N I  
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 26/118 (22%), Positives = 38/118 (32%), Gaps = 6/118 (5%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG-HLPNELGQLRRLRFIRFGFNKLSGS 126
           L   +  L       +G+L  L  L+VAHN      LP     L  L  +    NK+   
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 127 IPTWIGVLSKLQ----TLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
             T + VL ++     +L L  N      P +   +  L       N       K   
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCI 221

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.8 bits (174), Expect = 7e-15
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKL-SGS 126
           L L+   +          LS L  L     N        +G L+ L+ +    N + S  
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 127 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVF 164
           +P +   L+ L+ L L +N         L  L ++ + 
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 24/118 (20%), Positives = 36/118 (30%), Gaps = 4/118 (3%)

Query: 66  TALNLSDMGLG--GTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKL 123
             L+LS  GL   G         + L  LD++ N     + +    L +L  + F  + L
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

Query: 124 SGSIPTWI-GVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
                  +   L  L  L + +             LS LEV     N          F
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 3/108 (2%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNE-LGQLRRLRFIRFGFNKLSGS 126
           L+LS  G+  T+  +   L  L  LD  H+N            LR L ++         +
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 127 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLL-NLSKLEVFDAIYNVIDG 173
                  LS L+ L++  NSF       +   L  L   D     ++ 
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
           + +T L+LS   L    P    +LS L  L+++HNNF          L  L+ + +  N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 123 LSGSIPTWIG-VLSKLQTLRLYNNSFTGPIPNSLL 156
           +  S    +    S L  L L  N F     +   
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 564

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
             V++ +L  + +                L++ +  F      +L  L+RL      F  
Sbjct: 282 TNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTS 334

Query: 123 LSGSIPTWIGVLSKLQTLRLYNN--SFTGPIPNSLLNLSKLEVFDAIYN 169
             G        L  L+ L L  N  SF G    S    + L+  D  +N
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 68  LNLSDMGLGGTIPLHLGNLS----FLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKL 123
           L+LS   +       L  L       +SLD++ N  +   P    ++R L  +    N  
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFD 212

Query: 124 SGSIP-TWIGVLSKLQTLRLYNNSFTG------PIPNSLLNLSKLEVFDAIYNVIDGTTT 176
           S ++  T I  L+ L+  RL    F           ++L  L  L + +     +D    
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 177 KMTFI 181
            +  +
Sbjct: 273 DIIDL 277

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 5/123 (4%)

Query: 42  NNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN--- 98
           N  S++       G++    H+ V     ++  L       L  L  L   +        
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 99  FHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNL 158
           +   + +    L  +         +              Q L L N  F       L +L
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 159 SKL 161
            +L
Sbjct: 328 KRL 330

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 13/145 (8%)

Query: 39  DLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN 98
           DL++N  I    C+ + +        ++ L+LS   +    P     +  L  L + +N 
Sbjct: 155 DLSSN-KIQSIYCTDLRVLHQMPLLNLS-LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNF 211

Query: 99  FHGHLPNE-LGQLRRLRFIR------FGFNKLSGSIPTWIGVLSKLQTLRL---YNNSFT 148
              ++    +  L  L   R           L     + +  L  L        Y + + 
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 149 GPIPNSLLNLSKLEVFDAIYNVIDG 173
             I +    L+ +  F  +   I+ 
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIER 296

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 9/98 (9%)

Query: 75  LGGTIPLHLGNLSFLVSLDVAHNNFHGHLPN-ELGQLRRLRFIRFGFNKLSGSIPTWIGV 133
               I      L+ + S  +                 + L  +   F +           
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK------ 323

Query: 134 LSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
           L  L+ L   +N        S ++L  LE  D   N +
Sbjct: 324 LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGL 359

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.2 bits (188), Expect = 1e-16
 Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 5/130 (3%)

Query: 39  DLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN 98
            L+N+++    + +         H  +  LNL+   +          L  L  LD+  N 
Sbjct: 359 SLSNSFTSLRTLTN--ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 99  FHGHLP-NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG--PIPNSL 155
               L   E   L  +  I   +NK          ++  LQ L L   +       P+  
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 156 LNLSKLEVFD 165
             L  L + D
Sbjct: 477 QPLRNLTILD 486

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 26/101 (25%), Positives = 36/101 (35%)

Query: 65  VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
           +T LNL+   L      +    S L SLDV  N      P    +L  L+ +    N+LS
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
                     + L  L L +NS      N  +    L   D
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 4e-16
 Identities = 20/114 (17%), Positives = 37/114 (32%)

Query: 60  SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFG 119
           +R+ ++T+L++    +    P     L  L  L++ HN               L  +   
Sbjct: 46  TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105

Query: 120 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
            N +             L TL L +N  +     + + L  L+      N I  
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.9 bits (182), Expect = 6e-16
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 2/115 (1%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           L+L    +             L++LD++HN           QL  L+ +    NK+    
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 128 PTWIGVL--SKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
              + +   S L+ L L +N      P     + +L         +  + T+   
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 5e-15
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
            + S + L   +P  L   + +  L++ HN           +  +L  +  GFN +S   
Sbjct: 9   ADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
           P     L  L+ L L +N  +     +    + L     + N I  
Sbjct: 66  PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 23/108 (21%), Positives = 33/108 (30%), Gaps = 2/108 (1%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           LNL    L           + L  L +  N+      N   + + L  +    N LS + 
Sbjct: 78  LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPN--SLLNLSKLEVFDAIYNVIDG 173
                 L  LQ L L NN           +   S L+  +   N I  
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 14/146 (9%)

Query: 39  DLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSF--LVSLDVAH 96
            L N   +   +   + +   +    +  L+LS+  L  T       L +  L  LD+++
Sbjct: 201 FLNNV-QLGPSLTEKLCLELANTS--IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257

Query: 97  NNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN---------SF 147
           NN +    +    L +L +    +N +       +  L  ++ L L  +         S 
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 148 TGPIPNSLLNLSKLEVFDAIYNVIDG 173
                 S   L  LE  +   N I G
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPG 343

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 25/107 (23%), Positives = 33/107 (30%), Gaps = 1/107 (0%)

Query: 69  NLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP 128
            L      G     L  LS L  L++  N F          L  L+ I  G N L+    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 129 TWIGVLSKLQTLRLYNNSFTGPIPNSLL-NLSKLEVFDAIYNVIDGT 174
           +       L++L L  N  T             L   D  +N  D T
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 9/126 (7%)

Query: 59  GSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR- 117
           G +   +T L+LS   L          L  L    + +NN      + L  L  +R++  
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 118 --------FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
                        L          L  L+ L + +N   G   N    L  L+      +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 170 VIDGTT 175
                T
Sbjct: 364 FTSLRT 369

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 10/116 (8%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG--HLPNELGQLRRLRFIRFGFNKLSG 125
           + LS              +  L  L +           P+    LR L  +    N ++ 
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 126 SIPTWIGVLSKLQTLRLYNNSFT--------GPIPNSLLNLSKLEVFDAIYNVIDG 173
                +  L KL+ L L +N+          G     L  LS L + +   N  D 
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 5e-12
 Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 63  QRVTALNLSDMGLGGTIP--LHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGF 120
           + +  L LS+  +       L +   S L  L+++ N      P     + RL  +    
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 121 NKLSGSIPTWIGV---LSKLQTLRLYNNSFTGPIPNSL--LNLSKLEVFDAIYNVIDG 173
            +L  S+   + +    + ++ L L N+  +     +   L  + L + D  YN ++ 
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 63  QRVTALNLSDMGLGG--TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGF 120
             +  L L  + L    + P     L  L  LD+++NN      + L  L +L  +    
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 121 NKLS--------GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172
           N L+        G    ++  LS L  L L +N F         +L +L++ D   N ++
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 173 G 173
            
Sbjct: 574 T 574

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 4/117 (3%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
            ++S   L          L  L  L++  N+  G   N    L  L+++    +  S   
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 128 PT----WIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
            T         S L  L L  N  +    ++   L  LEV D   N I    T   +
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 6/115 (5%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
             +  LNL   G          +L  L  +D+  NN +    +       L+ +    N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 123 LSGSIPTWIG-VLSKLQTLRLYNNSFTGPIPN-----SLLNLSKLEVFDAIYNVI 171
           ++       G     L  L +  N F     +     + +N +   + +   + +
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYL 650

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 13/119 (10%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHL---------PNELGQLRRLRFIRF 118
             L    +       L  L  +  L++  +     +               L+ L  +  
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 119 GFNKLSGSIPTWIGVLSKLQTLRLYNN--SFTGPIPNSLLNL--SKLEVFDAIYNVIDG 173
             N + G        L  L+ L L N+  S       + ++L  S L + +   N I  
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.1 bits (174), Expect = 5e-15
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 12/116 (10%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG---------HLPNELGQLRRLRFI 116
           T + L +      +P  L +L  L SL++A N              L ++     +++  
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 117 RFGFNKLSG-SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
             G+N L        +  + KL  L   +N        +     KL      YN I
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQI 607

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 1e-13
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 12/142 (8%)

Query: 39  DLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN 98
           D + N  I     +        +    + + LS   +           S + ++ +++N 
Sbjct: 650 DFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 99  F-------HGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGV--LSKLQTLRLYNNSFTG 149
                                L  I   FNKL+ S+        L  L  + +  N F+ 
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 150 PIPNSLLNLSKLEVFDAIYNVI 171
             P   LN S+L+ F   +   
Sbjct: 768 -FPTQPLNSSQLKAFGIRHQRD 788

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 6e-13
 Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 34/136 (25%)

Query: 68  LNLSDMGLGG------TIPLHLGNLSFLVSLDVAHNNFHG-------------------H 102
           ++L D  +G        I   +  L+ L  +  A++ F                     +
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

Query: 103 LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGP---------IPN 153
                  L+ L  +          +P ++  L +LQ+L +  N              + +
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 154 SLLNLSKLEVFDAIYN 169
                 K+++F   YN
Sbjct: 543 DEDTGPKIQIFYMGYN 558

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 5e-12
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 13/110 (11%)

Query: 68  LNLSDMGLGGTIP--LHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR------FG 119
           ++L    L  ++        L +L ++DV++N F    P +     +L+           
Sbjct: 733 IDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAE 790

Query: 120 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
            N++    PT I     L  L++ +N     +   L    +L + D   N
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 15/118 (12%)

Query: 66  TALNLSDMGLGGTIP--LHLGNLSFLVSLDVAHNNFHGHLPN-----ELGQLRRLRFIRF 118
             L  S   L   IP   +  ++  + S+D ++N       N     +  +      +  
Sbjct: 622 EGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 119 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFT-------GPIPNSLLNLSKLEVFDAIYN 169
            +N++           S + T+ L NN  T        P   +  N   L   D  +N
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 6e-11
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 66  TALNLSDMGLGG-TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
               +    L        L  +  L  LD  HN    HL    G   +L  ++  +N++ 
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE 608

Query: 125 GSIPTWIG-VLSKLQTLRLYNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDG 173
             IP        +++ L   +N     P   +  ++  +   D  YN I  
Sbjct: 609 -EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 3e-10
 Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 9/100 (9%)

Query: 78  TIPLHLGNLSFLVSLDVAH------NNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWI 131
           + P    N S L +  + H      N      P  +     L  ++ G N +   +   +
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL 825

Query: 132 GVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
               +L  L + +N        S+    +  ++  +Y+  
Sbjct: 826 --TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 23/130 (17%)

Query: 43  NWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGH 102
           NW+ +  +  W                             L N   +  L +A     G 
Sbjct: 301 NWNFNKELDMWGDQPGVD----------------------LDNNGRVTGLSLAGFGAKGR 338

Query: 103 LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPN-SLLNLSKL 161
           +P+ +GQL  L+ + FG +  + S   +              +          L    +L
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 162 EVFDAIYNVI 171
            + D + + I
Sbjct: 399 NLSDLLQDAI 408

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 1/105 (0%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLP-NELGQLRRLRFIRFGFNKLSGS 126
           L++S              L+ L +L +A N+F  +   N       L F+     +L   
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 127 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
                  L +LQ L + +N+      +    L  L   D  +N I
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 20/116 (17%), Positives = 32/116 (27%)

Query: 65  VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
              ++LS   L         N S L  LD++              L  L  +    N + 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
              P     L+ L+ L              +  L  L+  +  +N I        F
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 27/113 (23%), Positives = 39/113 (34%), Gaps = 1/113 (0%)

Query: 60  SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFG 119
           S    +  L+LS   +          L  L +L +  N      P     L  L  +   
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 120 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTG-PIPNSLLNLSKLEVFDAIYNVI 171
             KL+      IG L  L+ L + +N      +P    NL+ L   D  YN I
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 1/103 (0%)

Query: 68  LNLSD-MGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS 126
           L ++       T+     N + L  LD++              L RL+ +    N L   
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 127 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
             +    L  L TL    N               L  F+   N
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 7e-11
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 3/102 (2%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
               D  L   +P  +   S   ++D++ N               L+++     ++    
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
                 L  L  L L  N      P S   L+ LE   A+  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 1/95 (1%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG-S 126
           L L+   +    P     L+ L +L              +GQL  L+ +    N +    
Sbjct: 85  LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144

Query: 127 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKL 161
           +P +   L+ L  + L  N       N L  L + 
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 3/108 (2%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNE-LGQLRRLRFIRFGFNKLSGS 126
           L+LS  G    +  +   L  L  LD  H+             L +L ++   +      
Sbjct: 381 LDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 127 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLL-NLSKLEVFDAIYNVIDG 173
                  L+ L TL++  NSF     +++  N + L   D     ++ 
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 24/118 (20%), Positives = 35/118 (29%), Gaps = 6/118 (5%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG-HLPNELGQLRRLRFIRFGFNKLSGS 126
           L   +  L       +G L  L  L+VAHN  H   LP     L  L  +   +N +   
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168

Query: 127 IPTWIGVLSKL----QTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
               +  L +      +L +  N     I +      KL       N       K   
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCL 225

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 22/86 (25%), Positives = 31/86 (36%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
             +T L+LS   L          L  L  L+++HNN      +   QL  L  +   FN+
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532

Query: 123 LSGSIPTWIGVLSKLQTLRLYNNSFT 148
           +  S          L    L NNS  
Sbjct: 533 IETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 64  RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKL 123
            +    L+         +    L+ + ++ +A  +       ++ +  + + +     +L
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL 319

Query: 124 SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
               PT    L  L++L L  N  +  I    + L  L   D   N +
Sbjct: 320 K-QFPT--LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNAL 362

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 9/129 (6%)

Query: 45  SISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLP 104
            ++Y       I        V+A++L+ + +       +       SL +          
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ--- 321

Query: 105 NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSL--LNLSKLE 162
                L  L+ +    NK S  I      L  L  L L  N+ +     S   L  + L 
Sbjct: 322 FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 163 VFDAIYNVI 171
             D  +N  
Sbjct: 380 HLDLSFNGA 388

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 20/107 (18%), Positives = 27/107 (25%)

Query: 65  VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
              L  S   L          L  L  LD+     +    +      RL  +    N L 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
               T +     L+ L       +      L N   LE      N I
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.3 bits (152), Expect = 5e-12
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
            N  ++GL   IP  L   +    L+ + N           +L  L F+     ++    
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
                   +L TL L  N        +L     L+    I   I
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 24/114 (21%), Positives = 36/114 (31%), Gaps = 2/114 (1%)

Query: 59  GSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRF 118
           G     V ++NL                S L  LD+   +    LP+ L  L  L+ +  
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308

Query: 119 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPI-PNSLLNLSKLEVFDAIYNVI 171
             NK              L  L +  N+    +    L NL  L   D  ++ I
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 17/98 (17%), Positives = 26/98 (26%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           L L+   L       L     L  L              L   + L  +  G N +S   
Sbjct: 86  LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
                   KL+ L   NN+        + +L +     
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 2/113 (1%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
            ++ D  +   +   L  +S + S+++  + F     N       L+ +      LS  +
Sbjct: 236 EDMDDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL 293

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
           P+ +  LS L+ L L  N F      S  N   L       N           
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 6e-11
 Identities = 22/112 (19%), Positives = 39/112 (34%)

Query: 60  SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFG 119
           SR   +T L+L+   +         +   L +L +  N         L   + L+ + F 
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 120 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
              +S      +     L++L L +N  +           KL+V D   N I
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 7e-11
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG---HLPNELGQLRRLRFIRFGFNK 122
             LNLS   L  +       L  L  L++  N+F        N L  L RL  +   F  
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 123 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEV 163
           LS         L  +  + L +N  T     +L +L  + +
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 3/116 (2%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHL-PNELGQLRRLRFIRFGFNKL--S 124
           L LS         +   N   L  L +  N     L    L  L  LR +    + +  S
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
                 +  LS LQ+L L  N        +     +LE+ D  +  +     +  F
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 25/106 (23%), Positives = 32/106 (30%), Gaps = 4/106 (3%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNE-LGQLRRLRFIRFGFNKLSGS 126
           LNLS                 L  LD+A               L  L+ +    + L  S
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 127 IPTWIGVLSKLQTLRLYNNSFTGPI---PNSLLNLSKLEVFDAIYN 169
                  L  LQ L L  N F        NSL  L +LE+    + 
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 64  RVTALNLSDMGLGGTIPLH-LGNLSFLVSLDVAHNNFH--GHLPNELGQLRRLRFIRFGF 120
            +T L++        +    L NL  L  LD++H++         +L  L  L+ +   +
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 121 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLL-NLSKLEVFDAIYNVIDG 173
           N+             +L+ L L           S   NL  L+V +  ++++D 
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 3/106 (2%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L     G+     + L N   L SL +  N+       +     +L+ + F  N +  
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

Query: 126 SIPTWIGVLSKLQ--TLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
                +  L +    +L L  N   G I     + +  +  +    
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 4/101 (3%)

Query: 68  LNLSDMGLGGTIPLH---LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
           LNL               L  L  L  L ++  +      +    L+ +  +    N+L+
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
            S    +  L  +  L L +N  +  +P+ L  LS+    +
Sbjct: 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 68  LNLSDMGLG--GTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
           L+LS   +       L L NLS L SL++++N           +  +L  +   F +L  
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 126 SIP-TWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTT 175
               +    L  L+ L L ++            L  L+  +   N      
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 68  LNLSDMGLGGTIPLH-LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS 126
           L+L+   L          NL  L  L+++H+            L  L+ +    N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 127 IPTWIGV---LSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
                     L +L+ L L     +    ++  +L  +   D  +N +
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           L LS   L         +L  +  +D++HN         L  L+ +  +    N +S  +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIIL 539

Query: 128 PTWIGVLSKLQTLRLYNNSFTG 149
           P+ + +LS+ +T+ L  N    
Sbjct: 540 PSLLPILSQQRTINLRQNPLDC 561

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.6 bits (158), Expect = 6e-13
 Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 78  TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR-FGFNKLSGSIPTWIGVLSK 136
            +   + +L  L  LD+       + P   G    L+ +     + L  ++P  I  L++
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQ 278

Query: 137 LQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172
           L+ L L        +P+ +  L    +     ++  
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 9e-12
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 12/107 (11%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQ---------LRRLRFIRF 118
           L L+   L   +P  + +L+ L  L +        LP  L           L  L+ +R 
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 119 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
            +  +  S+P  I  L  L++L++ N+  +  +  ++ +L KLE  D
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 60  SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFG 119
           +      AL L  + L    P     LS L  + +        LP+ + Q   L  +   
Sbjct: 78  ATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLA 135

Query: 120 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
            N L  ++P  I  L++L+ L +        +P  L +         + N
Sbjct: 136 RNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 7e-11
 Identities = 13/91 (14%), Positives = 29/91 (31%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           L+L         P   G  + L  L +   +    LP ++ +L +L  +          +
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNL 158
           P+ I  L     + +  +       +  +  
Sbjct: 294 PSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 13/113 (11%), Positives = 24/113 (21%), Gaps = 23/113 (20%)

Query: 78  TIPLHLGNLSFLVSLDVA-------------------HNNFHGHLPNELGQLRR--LRFI 116
                L       + D                              + L    +     +
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVAL 86

Query: 117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
                 L    P     LS LQ + +        +P+++   + LE      N
Sbjct: 87  ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARN 137

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 3e-10
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 13/103 (12%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
             +T L + D  L  ++P     L    +L+V+ N     LP     L  L         
Sbjct: 61  AHITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 123 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
           L         + S L  L ++ N  T  +P     L +L V D
Sbjct: 116 LP-------ALPSGLCKLWIFGNQLTS-LPVLPPGLQELSVSD 150

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L +    L  ++P+    L     L V+ N     LP    +L +L       N+L+ 
Sbjct: 124 CKLWIFGNQLT-SLPVLPPGLQ---ELSVSDNQL-ASLPALPSELCKL---WAYNNQLT- 174

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
           S+P        LQ L + +N     +P     L KL  ++
Sbjct: 175 SLPMLPS---GLQELSVSDNQLAS-LPTLPSELYKLWAYN 210

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 6e-08
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L +S   L  ++P+    L     L V+ N     LP     L  L       N+L+ 
Sbjct: 224 KELIVSGNRLT-SLPVLPSELK---ELMVSGNRL-TSLPMLPSGLLSLSV---YRNQLT- 274

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
            +P  +  LS   T+ L  N  +     +L  ++    + 
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 7e-08
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 12/92 (13%)

Query: 78  TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKL 137
           ++P     L     L V+ N     LP    +L+ L       N+L+ S+P        L
Sbjct: 215 SLPALPSGLK---ELIVSGNRL-TSLPVLPSELKELMV---SGNRLT-SLPMLPS---GL 263

Query: 138 QTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
            +L +Y N  T  +P SL++LS     +   N
Sbjct: 264 LSLSVYRNQLTR-LPESLIHLSSETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L   +  L  ++P+    L     L V+ N     LP    +L +L       N+L+ 
Sbjct: 164 CKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELYKLWAYN---NRLT- 214

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEV 163
           S+P        L+ L +  N  T  +P     L +L V
Sbjct: 215 SLPALPS---GLKELIVSGNRLTS-LPVLPSELKELMV 248

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 8/83 (9%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L +S   L  ++P+    L   +SL V  N     LP  L  L     +    N LS 
Sbjct: 244 KELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS- 297

Query: 126 SIPTWIGVLSKLQTLRLYNNSFT 148
                +  L ++ +   Y+    
Sbjct: 298 ERT--LQALREITSAPGYSGPII 318

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
            R     ++D  L   +     +   +  LD++ N        +L    +L  +    N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 123 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
           L  ++   +  LS L+TL L NN         LL    +E   A  N I
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 7e-08
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 25/141 (17%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN--------FHGHLPN--------- 105
           Q    + L++  +     L  G  S +  LD+  N                         
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 106 ------ELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLS 159
                       +L+ +    NKL+  +       + +  + L NN     I  +L    
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQ 237

Query: 160 KLEVFDAIYNVIDGTTTKMTF 180
            LE FD   N     T +  F
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFF 258

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 84  GNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 143
            N +      V  ++    L +       ++ +    N LS      +   +KL+ L L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 144 NNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
           +N     +   L +LS L   D   N +
Sbjct: 67  SNVLYETLD--LESLSTLRTLDLNNNYV 92

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           LNLS   L     L L +LS L +LD+ +N        EL     +  +    N +S  +
Sbjct: 63  LNLSSNVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
                     + + L NN  T          S+++  D   N I
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 14/113 (12%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 60  SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFG 119
                +  L+ ++  +     +         ++ +A+N        + G   R++++   
Sbjct: 96  LVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 120 FNKLSG-SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
            N++   +          L+ L L  N     +    +  +KL+  D   N +
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK-GQVVFAKLKTLDLSSNKL 203

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 82  HLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141
            L     + +L  A+NN    +     + +  + I    NK++       G  S++Q L 
Sbjct: 94  ELLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 142 LYNNSFTG-PIPNSLLNLSKLEVFDAIYNVI 171
           L  N            +   LE  +  YN I
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 11/69 (15%), Positives = 25/69 (36%)

Query: 103 LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLE 162
           +        R +  +   + L  ++ +       ++ L L  N  +      L   +KLE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 163 VFDAIYNVI 171
           + +   NV+
Sbjct: 62  LLNLSSNVL 70

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 19/107 (17%), Positives = 32/107 (29%)

Query: 65  VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
              L+LS   L         +   L  LD++              L  L  +    N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
                    LS LQ L     +        + +L  L+  +  +N+I
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 1/114 (0%)

Query: 60  SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFG 119
                +  L+LS   +         +LS L +L +  N            L  L+ +   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 120 FNKLSGSIPTWIGVLSKLQTLRLYNNSFT-GPIPNSLLNLSKLEVFDAIYNVID 172
              L+      IG L  L+ L + +N      +P    NL+ LE  D   N I 
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 1/101 (0%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNE-LGQLRRLRFIRFGFNKLS 124
             L++S              LS L  L +A N+F  +   +   +LR L F+     +L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
              PT    LS LQ L + +N            L+ L+   
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 7e-08
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 1/97 (1%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKL-SGS 126
           L L+   +          LS L  L     N        +G L+ L+ +    N + S  
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 127 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEV 163
           +P +   L+ L+ L L +N         L  L ++ +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 26/120 (21%), Positives = 37/120 (30%), Gaps = 6/120 (5%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNF-HGHLPNELGQLRRLRFIRFGFNKLS 124
             L   +  L       +G+L  L  L+VAHN      LP     L  L  +    NK+ 
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 125 GSIPTWIGVLSKLQ----TLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
               T + VL ++     +L L  N     I        +L       N       K   
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 24/128 (18%), Positives = 37/128 (28%), Gaps = 4/128 (3%)

Query: 56  ISCGSRHQRVTALNLSDMGLG--GTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRL 113
                    +  L+LS  GL   G         + L  LD++ N     + +    L +L
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL 398

Query: 114 RFIRFGFNKLSGSIPTWI-GVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172
             + F  + L       +   L  L  L + +             LS LEV     N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 173 GTTTKMTF 180
                  F
Sbjct: 459 ENFLPDIF 466

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 83  LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWI-GVLSKLQTLR 141
             +L  L+ LD++H +           L  L  ++   N    +    I   L  L  L 
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
           L         P +  +LS L+V +   N +
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 30/130 (23%), Positives = 45/130 (34%), Gaps = 9/130 (6%)

Query: 39  DLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN 98
           DL+ N       CS       S    +  L+LS  G+  T+  +   L  L  LD  H+N
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTS----LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 407

Query: 99  FHGHLPNE--LGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLL 156
               +        LR L ++         +       LS L+ L++  NSF       + 
Sbjct: 408 LK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 157 -NLSKLEVFD 165
             L  L   D
Sbjct: 467 TELRNLTFLD 476

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 1/81 (1%)

Query: 68  LNLSDMGLGGTIPLH-LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS 126
           L ++               L  L  LD++        P     L  L+ +    N+L   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 127 IPTWIGVLSKLQTLRLYNNSF 147
                  L+ LQ + L+ N +
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPW 530

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 7/109 (6%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
            R     ++D  L   +     +   +  LD++ N        +L    +L  +    N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 123 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
           L       +  LS L+TL L NN         LL    +E   A  N I
Sbjct: 70  LY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 83  LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142
             +   L  L++ +N  +  +  ++    +L+ +    NKL+  +       + +  + L
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
            NN     I  +L     LE FD   N     T +  F
Sbjct: 222 RNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           LNLS   L     L L +LS L +LD+ +N        EL     +  +    N +S  +
Sbjct: 63  LNLSSNVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
                     + + L NN  T          S+++  D   N I
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 85  NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN 144
           N +      V  ++    L +       ++ +    N LS      +   +KL+ L L +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 145 NSFTGPIPNSLLNLSKLEVFDAIYNVI 171
           N     +   L +LS L   D   N +
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYV 92

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 81  LHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG-SIPTWIGVLSKLQT 139
           +         ++ +A+N        + G   R++++    N++   +          L+ 
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 140 LRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
           L L  N     +    +  +KL+  D   N +
Sbjct: 174 LNLQYNFIYD-VK-GQVVFAKLKTLDLSSNKL 203

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 83  LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142
           L     + +L  A+NN    +    GQ    + I    NK++       G  S++Q L L
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 143 YNNSFTG-PIPNSLLNLSKLEVFDAIYNVI 171
             N            +   LE  +  YN I
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 11/69 (15%), Positives = 25/69 (36%)

Query: 103 LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLE 162
           +        R +  +   + L  ++ +       ++ L L  N  +      L   +KLE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 163 VFDAIYNVI 171
           + +   NV+
Sbjct: 62  LLNLSSNVL 70

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 9e-09
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 83  LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142
           + +L+ L  L+V  N       + L  L +L  +    N+L       IG L+ L TL L
Sbjct: 261 VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
             N  T   P  L +LSK++  D    VI
Sbjct: 319 SQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
            +LNL        +   L N++ L  L V  +         +  L  L  +   +N++  
Sbjct: 135 YSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED 191

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
             P  +  L+ L     Y N  T   P  + N+++L       N I
Sbjct: 192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 6e-07
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L +++  +    P+   NL+ L SL + +N       + L  L  L +     N+++ 
Sbjct: 158 NYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD 213

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
             P  +  +++L +L++ NN  T   P  L NLS+L   +   N I
Sbjct: 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
           T L +    +  T    L NL+ L  L +  +N      + L  L ++  +  G N    
Sbjct: 91  TNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS 146

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
            +   +  ++ L  L +  +      P  + NL+ L      YN I
Sbjct: 147 DLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 8/106 (7%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L      +    P    +L+  +   +   +    +     +L  +  +     K++ 
Sbjct: 3   ATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA- 57

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
           SI   I  L+ L+ L L  N  T   P  L NL KL       N I
Sbjct: 58  SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI 100

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
            +L+L+   +    PL   +L+ L       N      P  +  + RL  ++ G NK++ 
Sbjct: 180 YSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
             P  +  LS+L  L +  N  +    N++ +L+KL++ +   N I
Sbjct: 236 LSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 8/107 (7%)

Query: 65  VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
                L    +  T+     +L  + +L            + +  L  L  I F  N+L+
Sbjct: 26  KMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLT 81

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
              P  +  L+KL  + + NN      P  L NL+ L       N I
Sbjct: 82  DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 124

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
           T L+L++  +    PL    L+ L  L +  N       + L  L  L  +    N+L  
Sbjct: 246 TDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 301

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
             P  I  L  L  L LY N+ +   P  + +L+KL+      N +
Sbjct: 302 ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 7e-08
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
           T L L    +    P+   +L+ L  L   +N       + L  L  + ++  G N++S 
Sbjct: 312 TYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLE 162
             P  +  L+++  L L + ++T    N   N+S   
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 65  VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
           VT L    +G+       +  L+ L  ++ ++N      P  L  L +L  I    N+++
Sbjct: 48  VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
              P  +  L+ L  L L+NN  T   P  L NL+ L   +   N I
Sbjct: 104 DITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
           T +N S+  L    PL   NL+ LV + + +N         L  L  L  +    N+++ 
Sbjct: 71  TQINFSNNQLTDITPL--KNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD 126

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172
             P  +  L+ L  L L +N+ +      L  L+ L+       V D
Sbjct: 127 IDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD 169

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 83  LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142
           L  L+ L SL   +N      P  LG L  L  +    N+L   I T +  L+ L  L L
Sbjct: 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGT-LASLTNLTDLDL 250

Query: 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
            NN  +   P  L  L+KL       N I  
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 83  LGNLSFLVSLDVAHNNFHGHLP-NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141
              L+  +   +   N    +   +L Q+  L+  R G   + G     +  L+ L  + 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQIN 74

Query: 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
             NN  T   P  L NL+KL       N I
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQI 102

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L LS   +     L    L+ L  L    N      P  L  L  L  +    NK+S 
Sbjct: 137 NRLELSSNTISDISAL--SGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSD 191

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173
              + +  L+ L++L   NN  +   P  L  L+ L+      N +  
Sbjct: 192 --ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
            + + L L+ + L  ++P +L     +  L++  N     LP     L  L       N+
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPASLEYL---DACDNR 111

Query: 123 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEV 163
           LS ++P        L+ L + NN  T  +P     L  +  
Sbjct: 112 LS-TLPELPA---SLKHLDVDNNQLTM-LPELPALLEYINA 147

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 5e-08
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L+  D  L  T+P    +L     LDV +N     LP     L  +       N+L+ 
Sbjct: 103 EYLDACDNRLS-TLPELPASL---KHLDVDNNQLT-MLPELPALLEYINA---DNNQLT- 153

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEV 163
            +P        L+ L + NN  T  +P    +L  L+V
Sbjct: 154 MLPELPT---SLEVLSVRNNQLTF-LPELPESLEALDV 187

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 10/104 (9%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLR----FIRF 118
             +  L++ +  L   +P    +L    +LDV+ N     LP    +         F R 
Sbjct: 160 TSLEVLSVRNNQLT-FLPELPESLE---ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRC 214

Query: 119 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLE 162
             N+++  IP  I  L    T+ L +N  +  I  SL   +   
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP 257

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 6/93 (6%)

Query: 66  TALNLSDMGLGGTIPLHLGNL----SFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFN 121
            AL++S   L  ++P             +      N    H+P  +  L     I    N
Sbjct: 183 EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240

Query: 122 KLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNS 154
            LS  I   +   +           F+      
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             +   +  L   +P  L NL FL ++   +N+    LP+    L  +     G N L  
Sbjct: 176 EFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVA---GNNILE- 228

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
            +P  +  L  L T+   NN     +P+   +L  L V D
Sbjct: 229 ELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRD 266

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 23/121 (19%)

Query: 61  RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGF 120
             ++   L L+++GL  ++P    +L    SL  + N+    LP     L+ L       
Sbjct: 69  LDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNL 123

Query: 121 NKLSG----------------SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVF 164
             LS                  +P  +   S L+ + + NNS    +P+   +L  +   
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAG 181

Query: 165 D 165
           +
Sbjct: 182 N 182

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 9/98 (9%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L +S+  L   +P  L N SFL  +DV +N+    LP+    L  +     G N+L  
Sbjct: 134 EYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAA---GNNQLE- 186

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEV 163
            +P  +  L  L  +   NNS    +P+  L+L  +  
Sbjct: 187 ELPE-LQNLPFLTAIYADNNSLKK-LPDLPLSLESIVA 222

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 78  TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKL 137
            +P    +L    S+   +N        EL  L  L  I    N L  ++P        L
Sbjct: 209 KLPDLPLSLE---SIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPP---SL 259

Query: 138 QTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFID 182
           + L + +N  T  +P    +L+ L+V + I++ +      + +++
Sbjct: 260 EALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLN 303

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 18/118 (15%)

Query: 78  TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRF-------------GFNKLS 124
            +P+   N+        A + +  + P   G+ R +   R                  LS
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFID 182
            S+P        L++L    NS T  +P    +L  L V +     +      + ++ 
Sbjct: 85  -SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLG 137

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 24/121 (19%), Positives = 35/121 (28%), Gaps = 22/121 (18%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPN---------------ELGQL 110
            +L  S   L   +P    +L  L+  +          P                EL   
Sbjct: 94  ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 152

Query: 111 RRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNV 170
             L+ I    N L   +P        L+ +   NN     +P  L NL  L    A  N 
Sbjct: 153 SFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLEE-LPE-LQNLPFLTAIYADNNS 206

Query: 171 I 171
           +
Sbjct: 207 L 207

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             LN S   +  ++     +L     L+V++N     LP    +L RL      FN L+ 
Sbjct: 300 YYLNASSNEIR-SLCDLPPSL---EELNVSNNKLI-ELPALPPRLERLIA---SFNHLA- 350

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEV 163
            +P        L+ L +  N      P+   ++  L +
Sbjct: 351 EVPELPQ---NLKQLHVEYNPLRE-FPDIPESVEDLRM 384

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
           Q +T L++S+      +     NL     L+ + N     L +    L  L       NK
Sbjct: 277 QSLTFLDVSENIFS-GLSELPPNLY---YLNASSNEIR-SLCDLPPSLEELNV---SNNK 328

Query: 123 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEV 163
           L   +P       +L+ L    N     +P    NL +L V
Sbjct: 329 LI-ELPALPP---RLERLIASFNHLAE-VPELPQNLKQLHV 364

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 15/98 (15%)

Query: 79  IPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLS--- 135
           I     + +FL       +N    +P E   ++        +++   + P   G      
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 136 ----------KLQTLRLYNNSFTGPIPNSLLNLSKLEV 163
                     +   L L N   +  +P    +L  L  
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESLVA 98

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 18/97 (18%)

Query: 78  TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP--------- 128
           T+P    +L    +L+V  N     LP     L  L      F+ LS   P         
Sbjct: 251 TLPDLPPSLE---ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 306

Query: 129 ----TWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKL 161
               +   +   L+ L + NN     +P     L +L
Sbjct: 307 NEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL 342

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 23/113 (20%), Positives = 38/113 (33%)

Query: 59  GSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRF 118
           G     V  L+LS   +          L  L  L++A+N  +         L  L+ +  
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 119 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
            +N L     +    L K+  + L  N        +   L KL+  D   N +
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 26/119 (21%), Positives = 36/119 (30%), Gaps = 3/119 (2%)

Query: 65  VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNE-LGQLRRLRFIRFGFNKL 123
              L LS   +          L  L  L++        +  E    L  LR +  G +K+
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 124 SGSIPTWIGVLSKLQTLRLYNNSFTGPI--PNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180
               P     L  L  LRLY    +  +       NL  L   D   N I       +F
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 8/116 (6%)

Query: 57  SCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFI 116
           SC    +           L   +P     L+    L ++ N       +    L +L+ +
Sbjct: 1   SCSFDGRIA---FYRFCNLT-QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLL 53

Query: 117 RFGFNKLSGSI-PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
             G      +I       L  L+ L L ++      P++   L  L      +  +
Sbjct: 54  ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL 109

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 7/111 (6%)

Query: 68  LNLSDMGLGG-TIPLHLGNLSFLVSLDVAHNNFHGHLPNEL-GQLRRLRFIRFGFNKLSG 125
           ++LS+  L    I   L  +  L  L +  N F     ++   +   L  +  G N L  
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 126 SIPTWIGV-----LSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
           +  T +       LS LQ L L +N      P    +L+ L       N +
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 14/148 (9%)

Query: 39  DLTNNWSISYPICSWVGISCGSRHQRVTALNLSDM------------GLGGTIPLHLGNL 86
            L  N   S     W       R+  +  L++S               +  +    L   
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239

Query: 87  SFLVSLDVAHNNFHGHLPNELGQLRR--LRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN 144
             ++      +N      N    L R  +R +      +          L  L+ L L  
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 145 NSFTGPIPNSLLNLSKLEVFDAIYNVID 172
           N        +   L  L+V +  YN++ 
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 5/104 (4%)

Query: 63  QRVTALNLSDMGLGGTI--PLHLGNLSFLVSLDVAHNNFHG-HLPNELGQLRRLRFIRFG 119
             +  L L   GL   +    +  NL  L  LD++ N     +L    G+L  L+ I F 
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 120 FNKLSGSIPTWIGVLS--KLQTLRLYNNSFTGPIPNSLLNLSKL 161
            N++       +  L    L    L  NS    +          
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 3/97 (3%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHL--PNELGQLRRLRFIRFGFNKLSG 125
           L+L    +    P     L  L  L +        +        L+ L  +    N++  
Sbjct: 78  LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 126 -SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKL 161
             +    G L+ L+++   +N       + L  L   
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 69  NLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP 128
            L               LS L  L + HN  +   P     L  LR +    N+L+  + 
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLS 520

Query: 129 TWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEV 163
               + + L+ L +  N    P P+  ++LS L++
Sbjct: 521 HND-LPANLEILDISRNQLLAPNPDVFVSLSVLDI 554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 19/86 (22%), Positives = 35/86 (40%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
           + +  LNL+   +          L  L  L++++N       +    L ++ +I    N 
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349

Query: 123 LSGSIPTWIGVLSKLQTLRLYNNSFT 148
           ++         L KLQTL L +N+ T
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNALT 375

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 2/104 (1%)

Query: 68  LNLSDMGLGG-TIPLHLGNLSFLVSLDVAHNNFHGHLPNE-LGQLRRLRFIRFGFNKLSG 125
           LNL         +     NL+ L +L + +      +       L  L  +      L  
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
                +  +  +  L L+ +     +      LS +   +    
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 2/106 (1%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG-HLPNELGQLRRLRFIRFGFNKLSGS 126
           L+LSD  L        G LS L  L++  N +    + +    L  L+ +R G  +    
Sbjct: 79  LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 127 IPTW-IGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
           I       L+ L  L +   S       SL ++  +       +  
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 26/135 (19%), Positives = 41/135 (30%), Gaps = 7/135 (5%)

Query: 38  SDLTNNWSISYPICSWVGISCGSRHQRVT--ALNLSDMGLGGTIPLHLGNLSFLVSLDVA 95
            D T N    +       +S   + + VT   L++    L   +      L  +  + V 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 96  HNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI---PTWIGVLSKLQTLRLYNNSFT--GP 150
           ++       +    L+ L F+    N +           G    LQTL L  N       
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 151 IPNSLLNLSKLEVFD 165
               LL L  L   D
Sbjct: 379 TGEILLTLKNLTSLD 393

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 65  VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
           + +L+LS   +       L   + L  L +  +  +    +    L  L  +    N LS
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTG-PIPNSLLNLSKLEVFD 165
               +W G LS L+ L L  N +    + +   NL+ L+   
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 56  ISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRF 115
           +SC +        +        +IP  L   + + SLD++ N        +L     L+ 
Sbjct: 2   LSCDASG----VCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQV 54

Query: 116 IRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172
           +    ++++         L  L+ L L +N  +    +    LS L+  + + N   
Sbjct: 55  LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 64  RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNF---HGHLPNELGQLRRLRFIRFGF 120
           +V  + + +  +         +L  L  LD++ N     +       G    L+ +    
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 121 NKLSGSIPTWIGV---LSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
           N L  S+     +   L  L +L +  N+F  P+P+S     K+   +
Sbjct: 371 NHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           LNLS  G+     +       L  LDV++NN        L +L+ L       NKL  ++
Sbjct: 415 LNLSSTGIRV---VKTCIPQTLEVLDVSNNNL-DSFSLFLPRLQELYI---SRNKLK-TL 466

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
           P    +   L  +++  N            L+ L+      N
Sbjct: 467 PDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 12/96 (12%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 68  LNLSDMGLGGTIPLH-LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS 126
           L + ++     I       L+ L  L++   +   +    L  +R +  +    ++ +  
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 127 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLE 162
           +  +  +LS ++ L L + +      + L       
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 83  LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142
           L N   LV +D+++N     + +   +++RL  +    N+L  ++  +   +  L+ L L
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 308

Query: 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
            +N     +  +     +LE     +N I
Sbjct: 309 SHNHLLH-VERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
           QR+  L +S+  L   + L+   +  L  LD++HN+   H+     Q  RL  +    N 
Sbjct: 278 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335

Query: 123 LSGSIPTWIGVLSKLQTLRLYNNSFTG-PIPNSLLNLSKLEVFDA 166
           +  ++   +     L+ L L +N +    +     N+++  V DA
Sbjct: 336 IV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 377

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           ++LS   L   +      +  L  L +++N     L      +  L+ +    N L   +
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HV 316

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKL 161
                   +L+ L L +NS      ++   L  L
Sbjct: 317 ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           +++               L+    +   ++         L   R++  +     ++   I
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EI 90

Query: 128 PTWI-GVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
            T+       +Q L +  N+     P+   N+  L V     N +
Sbjct: 91  DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.4 bits (89), Expect = 8e-04
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
           T L++S+  L           + L +L ++ N    H+   L  +  L      +N L  
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-- 204

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKL 161
              + + +   ++ L   +NS         + L+ L
Sbjct: 205 ---STLAIPIAVEELDASHNSINVVRGPVNVELTIL 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 2/107 (1%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L L  + +          L  L  L+++H  +   +         L  +      L+ 
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237

Query: 126 SIPTW-IGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
           ++P   +  L  L+ L L  N  +    + L  L +L+    +   +
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 2/109 (1%)

Query: 64  RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKL 123
               L+L    +         +   L  L++  N      P     L  LR +    N+L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 124 SGSIPTWI-GVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
              IP  +   LS L  L +  N     +     +L  L+  +   N +
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 66  TALNLSDMGLGGTIPLH-LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
             L L    L  +IP   L +L  L+ L + H N +        +L RL+ +        
Sbjct: 155 EQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
            ++         L +L + + + T     ++ +L  L   +  YN I
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 85  NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPT-WIGVLSKLQTLRLY 143
           +L  L SL+V  N+           L  L  +      L+ SIPT  +  L  L  LRL 
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLR 184

Query: 144 NNSFTGPIPNSLLNLSKLEVFD 165
           + +       S   L +L+V +
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLE 206

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 23/115 (20%), Positives = 35/115 (30%), Gaps = 6/115 (5%)

Query: 57  SCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFI 116
            C ++ + V             +P  +   +    LD+  N       +E      L  +
Sbjct: 8   ECSAQDRAV---LCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEEL 61

Query: 117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
               N +S   P     L  L+TL L +N            LS L   D   N I
Sbjct: 62  ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 2/107 (1%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             L L    L          LS L  LD++ N     L      L  L+ +  G N L  
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV- 141

Query: 126 SIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
            I       L+ L+ L L   + T     +L +L  L V    +  I
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 22/102 (21%), Positives = 46/102 (45%)

Query: 64  RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKL 123
            +T+L+++   L     L + +L +L  L++++N       + L +L RL+ I+    +L
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 124 SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
           +   P     L+ L+ L +  N  T    +   ++  LE   
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 83  LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142
           L N   LV +D+++N     + +   +++RL  +    N+L  ++  +   +  L+ L L
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

Query: 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
            +N     +  +     +LE     +N I
Sbjct: 303 SHNHLLH-VERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
           QR+  L +S+  L   + L+   +  L  LD++HN+   H+     Q  RL  +    N 
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 123 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLL-NLSKLEVFDA 166
           +  ++   +     L+ L L +N +      +L  N+++  V DA
Sbjct: 330 IV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 83  LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142
              +  L  L +++N     L      +  L+ +    N L   +        +L+ L L
Sbjct: 268 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325

Query: 143 YNNSFTGPIPNSLLNLSKL 161
            +NS      ++   L  L
Sbjct: 326 DHNSIVTLKLSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           +++               L+    +   ++         L   R++  +     ++   I
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EI 84

Query: 128 PTWI-GVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
            T+       +Q L +  N+     P+   N+  L V     N +
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 13/104 (12%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           L LS   L     + L  +  L   +V++N       + L     +  +    N ++  +
Sbjct: 170 LQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VV 220

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
                V  +L  L+L +N+ T      LLN   L   D  YN +
Sbjct: 221 RG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL 260

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 83  LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142
           +  LS L  L +   +        L  L  L  +    +    SI T I  L K+ ++ L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172
             N     I   L  L +L+  +  ++ + 
Sbjct: 144 SYNGAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 4/109 (3%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
            A     +G   T  +    ++ L  + +A+ N    L   +     ++ +       + 
Sbjct: 23  KAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATN 80

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
             P  I  LS L+ LR+     T     +L  L+ L + D  ++  D +
Sbjct: 81  YNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
           T L++S      +I   +  L  + S+D+++N     +   L  L  L+ +   F+ +  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD 173

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTG 149
                I    KL  L  ++ +  G
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTIGG 195

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 8/112 (7%)

Query: 62  HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNF-------HGHLPNELGQLRRLR 114
              +  L+++           +     L +LD++ N             P +   L+ L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 115 FIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG-PIPNSLLNLSKLEVFD 165
               G    SG          +LQ L L +NS        S    S+L   +
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 27/136 (19%)

Query: 39  DLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMG---LGGTIPLHLGNLSFLVSLDVA 95
           DL++N  +       +   C  +   +  L L + G     G           L  LD++
Sbjct: 179 DLSDNPELGER--GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 96  HNNFHGHLPNELGQ-LRRLRFIRFGFNKLSGSIPTWIGV--------------------L 134
           HN+              +L  +   F  L   +P  +                      L
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDRNPSPDEL 295

Query: 135 SKLQTLRLYNNSFTGP 150
            ++  L L  N F   
Sbjct: 296 PQVGNLSLKGNPFLDS 311

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 80  PLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQT 139
            +     + +  L +AH +    L + L QL  +  +    N+L  ++P  +  L  L+ 
Sbjct: 434 SVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV 490

Query: 140 LRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172
           L+  +N+    +   + NL +L+      N + 
Sbjct: 491 LQASDNALEN-VDG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 6e-05
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 63  QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK 122
             VT L+LS   L   +P  L  L  L  L  + N    ++   +  L RL+ +    N+
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-ENVDG-VANLPRLQELLLCNNR 519

Query: 123 LSG-SIPTWIGVLSKLQTLRLYNNSFT 148
           L   +    +    +L  L L  NS  
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 85  NLSFLVSLDVAHNNFHGHLPNE-LGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 143
            +  L+ LD+       ++       L  L+++  G   +   +P     L  L+ L + 
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP-LVGLEELEMS 226

Query: 144 NNSFTGPIPNSLLNLSKLE 162
            N F    P S   LS L+
Sbjct: 227 GNHFPEIRPGSFHGLSSLK 245

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 3/101 (2%)

Query: 66  TALNLSDMGLGGTIPLH-LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124
             L+L ++     I       L  L  L++   N    +P  L  L  L  +    N   
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP 231

Query: 125 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
              P     LS L+ L + N+  +    N+   L+ L   +
Sbjct: 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 2/103 (1%)

Query: 64  RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKL 123
               LNL +  +         +L  L  L +  N+           L  L  +    N L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 124 SGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
           +  IP+     LSKL+ L L NN        +   +  L   D
Sbjct: 136 T-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
             LNL    +   +P +L  L  L  L+++ N+F    P     L  L+ +    +++S 
Sbjct: 199 KYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
                   L+ L  L L +N+ +    +    L  L    
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 3/88 (3%)

Query: 85  NLSFLVSLDVAHNNFHGHLPNE-LGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 143
            +  L  LD+       ++       L  LR++      L   IP     L KL  L L 
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP-LIKLDELDLS 215

Query: 144 NNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
            N  +   P S   L  L+    I + I
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 3/104 (2%)

Query: 63  QRVTALNLSDMGLGGTIPLH-LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFN 121
             +  L+L ++     I       LS L  L++A  N    +P  L  L +L  +    N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN 217

Query: 122 KLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
            LS   P     L  LQ L +  +       N+  NL  L   +
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 64  RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKL 123
               LNL +  +         +L  L  L ++ N+           L  L  +    N+L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 124 SGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
           + +IP      LSKL+ L L NN        +   +  L   D
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 12/124 (9%)

Query: 51  CSWVGISCGSRH---------QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG 101
           C    + C                  L+L +  +         NL  L +L + +N    
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 102 HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKL 161
             P     L +L  +    N+L   +P    +   LQ LR++ N  T    +    L+++
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 162 EVFD 165
            V +
Sbjct: 148 IVVE 151

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 7/116 (6%)

Query: 66  TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG 125
           T L+L    +       L  L+ L  L ++ N+        L     LR +    NKL  
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253

Query: 126 SIPTWIGVLSKLQTLRLYNNSFTG------PIPNSLLNLSKLEVFDAIYNVIDGTT 175
            +P  +     +Q + L+NN+ +         P      +         N +    
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNEL-GQLRRLRFIRFGFNKLSGS 126
           L+LS  G+  T+  +   L  L  LD  H+N        +   LR L ++         +
Sbjct: 83  LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 127 IPTWIGVLSKLQTLRLYNNSF-TGPIPNSLLNLSKLEVFDAIYNVID 172
                  LS L+ L++  NSF    +P+    L  L   D     ++
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 66  TALNLSDMGLGGTIPLH-LGNLSFLVSLDVAHNNFHGHLPNE-LGQLRRLRFIRFGFNKL 123
             L++S               LS L  L +A N+F  +   +   +LR L F+     +L
Sbjct: 129 IYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 124 SGSIPTWIGV---LSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
              +         LS LQ L + +N+F          L+ L+V D   N I
Sbjct: 188 E-QLSP--TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 4/88 (4%)

Query: 80  PLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKL 137
                  + L  LD++ N     + +    L +L  + F  + L   +   +    L  L
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNL 128

Query: 138 QTLRLYNNSFTGPIPNSLLNLSKLEVFD 165
             L + +             LS LEV  
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLK 156

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 3/84 (3%)

Query: 78  TIPLHLGNLSFLVSLDVAHNNFHGHLPNE-LGQLRRLRFIRFGFNKLSGSIPTWIGV-LS 135
               HL     L  L + +     HL    L  L  LR +    + L   +         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 136 KLQTLRLYNNSFTGPIPNSLLNLS 159
           +L  L L  N+       ++  LS
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLS 104

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 23/110 (20%)

Query: 62  HQR-VTALNLSD-MGLGGTIPLHLGNLSFLVSLDVAHNNFHG-HLPN----ELGQLRRLR 114
           H+  V   N+         IP +L    +         +  G HL N    E   L R+ 
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFY---------SHIGHHLKNIEHPERMTLFRMV 496

Query: 115 FIRFGF--NKLSGSIPTWI---GVLSKLQTLRLYNNSFT--GPIPNSLLN 157
           F+ F F   K+      W     +L+ LQ L+ Y        P    L+N
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 4/89 (4%)

Query: 85  NLSFLVSLDVAHNNFHGHLPNE-LGQLRRLRFIRFGFNKLSGSIPT-WIGVLSKLQTLRL 142
            L  L +L +        L       L  L+++    N L  ++P      L  L  L L
Sbjct: 103 GLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFL 160

Query: 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
           + N  +     +   L  L+      N +
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRV 189

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 83  LGNLSFLVSLDVAHNNF-HGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141
              L  +  +++  N   +           +L ++R    KL+  IP    +   L  L 
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELH 199

Query: 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
           L +N         LL  SKL      +N I
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.75
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.74
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.71
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.71
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.7
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.68
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.67
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.65
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.65
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.65
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.64
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.64
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.63
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.63
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.63
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.63
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.62
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.62
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.61
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.61
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.6
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.6
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.59
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.58
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.57
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.57
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.56
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.56
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.56
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.56
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.56
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.56
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.55
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.55
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.54
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.54
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.54
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.51
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.5
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.5
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.48
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.48
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.46
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.45
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.45
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.45
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.44
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.43
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.42
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.42
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.38
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.37
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.37
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.34
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.32
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.28
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.26
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.23
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.18
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.96
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.91
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.9
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.77
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.56
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.44
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.33
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.25
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.22
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.05
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.04
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.79
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.39
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.1
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.04
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.78
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.66
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.4
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.3

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=4.7e-28  Score=189.04  Aligned_cols=162  Identities=28%  Similarity=0.476  Sum_probs=147.1

Q ss_pred             CCChHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCC--ceeeeecCCC--CcEEEEEccCCCCcc--cCCccCCCCCCCc
Q 030065           17 SNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICS--WVGISCGSRH--QRVTALNLSDMGLGG--TIPLHLGNLSFLV   90 (183)
Q Consensus        17 ~~~~~~~~~l~~~k~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~l~~L~l~~~~l~~--~~~~~l~~l~~L~   90 (183)
                      .|.++|.++|++||.++. ++. .+.+|....++|.  |.||.|....  .+++.|+++++.+++  .+|..+..+++|+
T Consensus         2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~   79 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence            467889999999999985 444 6889988888998  9999998543  789999999999998  8999999999999


Q ss_pred             EEEecC-ccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCC
Q 030065           91 SLDVAH-NNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN  169 (183)
Q Consensus        91 ~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N  169 (183)
                      +|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence            999995 9999999999999999999999999999899999999999999999999999899999999999999999999


Q ss_pred             cccccCCcccc
Q 030065          170 VIDGTTTKMTF  180 (183)
Q Consensus       170 ~l~g~ip~~~~  180 (183)
                      .++|.+|..++
T Consensus       160 ~l~~~~p~~l~  170 (313)
T 1ogq_A          160 RISGAIPDSYG  170 (313)
T ss_dssp             CCEEECCGGGG
T ss_pred             cccCcCCHHHh
Confidence            99999887654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=1.8e-25  Score=189.39  Aligned_cols=160  Identities=22%  Similarity=0.320  Sum_probs=144.3

Q ss_pred             CChHHHHHHHHHHHhcccCCCCCCC-------CCCCCCCCCCc---eeeeecCCCCcEEEEEccCCCCcccCCccCCCCC
Q 030065           18 NLTTDQSALLAFKARVVDYRSDLTN-------NWSISYPICSW---VGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLS   87 (183)
Q Consensus        18 ~~~~~~~~l~~~k~~~~~~~~~~~~-------~w~~~~~~c~w---~gv~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~   87 (183)
                      ....|..||.++|.++.++.|....       +|....++|.|   .||.|... ++|+.|+++++++.|.+|+.+..++
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~  105 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT  105 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence            3457899999999999877776444       79988999999   99999854 7999999999999999999999999


Q ss_pred             CCcEEEecCcc---------------------------------------------------------------------
Q 030065           88 FLVSLDVAHNN---------------------------------------------------------------------   98 (183)
Q Consensus        88 ~L~~L~l~~n~---------------------------------------------------------------------   98 (183)
                      +|++|++++|.                                                                     
T Consensus       106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~  185 (636)
T 4eco_A          106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD  185 (636)
T ss_dssp             TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred             cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence            99999999884                                                                     


Q ss_pred             ---------CCCCChhhhcCCCCCcEEEecccccccc-----------------cCcccc--CCCCCcEEEcccCcccCC
Q 030065           99 ---------FHGHLPNELGQLRRLRFIRFGFNKLSGS-----------------IPTWIG--VLSKLQTLRLYNNSFTGP  150 (183)
Q Consensus        99 ---------l~~~~p~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~  150 (183)
                               +++ +|..++.+++|++|++++|.+++.                 +|..++  ++++|++|++++|.+.|.
T Consensus       186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~  264 (636)
T 4eco_A          186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK  264 (636)
T ss_dssp             TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred             hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence                     344 788899999999999999999985                 999998  999999999999999999


Q ss_pred             ccccccCCCCCcEEeccCCc-ccc-cCCccc
Q 030065          151 IPNSLLNLSKLEVFDAIYNV-IDG-TTTKMT  179 (183)
Q Consensus       151 ~p~~~~~l~~L~~L~l~~N~-l~g-~ip~~~  179 (183)
                      +|..++++++|++|++++|+ ++| .+|..+
T Consensus       265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~  295 (636)
T 4eco_A          265 LPTFLKALPEMQLINVACNRGISGEQLKDDW  295 (636)
T ss_dssp             CCTTTTTCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred             ChHHHhcCCCCCEEECcCCCCCccccchHHH
Confidence            99999999999999999998 998 788654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=2.9e-24  Score=185.30  Aligned_cols=158  Identities=24%  Similarity=0.329  Sum_probs=116.0

Q ss_pred             hccCCChHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCceeeeecCCCCcEEEEEccCCCCccc---CC----------
Q 030065           14 TTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGT---IP----------   80 (183)
Q Consensus        14 ~~~~~~~~~~~~l~~~k~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~---~~----------   80 (183)
                      ++.++.++|++||++||.++. ++. .+.+|....+||.|.||.|.  .++|+.|+++++++.|.   +|          
T Consensus         5 ~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~   80 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE   80 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred             ccccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence            344557889999999999997 555 78999878899999999997  47999999999998876   44          


Q ss_pred             -------------ccCCCCCCCcEEEecCccCCCCChh--hhcCCCCCcEEEecccccccccCccc-cCCCCCcEEEccc
Q 030065           81 -------------LHLGNLSFLVSLDVAHNNFHGHLPN--ELGQLRRLRFIRFGFNKLSGSIPTWI-GVLSKLQTLRLYN  144 (183)
Q Consensus        81 -------------~~l~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~L~~  144 (183)
                                   ..+..+++|++|++++|.++|.+|.  .++.+++|++|++++|.+++.+|..+ ..+++|++|++++
T Consensus        81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~  160 (768)
T 3rgz_A           81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA  160 (768)
T ss_dssp             EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred             ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence                         4567778888888888888877777  77888888888888888877776654 5677777777777


Q ss_pred             CcccCCcccc---ccCCCCCcEEeccCCcccccC
Q 030065          145 NSFTGPIPNS---LLNLSKLEVFDAIYNVIDGTT  175 (183)
Q Consensus       145 n~l~~~~p~~---~~~l~~L~~L~l~~N~l~g~i  175 (183)
                      |.+++..|..   +.++++|++|++++|.+++.+
T Consensus       161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  194 (768)
T 3rgz_A          161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDV  194 (768)
T ss_dssp             SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC
T ss_pred             CccCCcCChhhhhhccCCCCCEEECCCCcccccC
Confidence            7776555443   444444444444444444433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=1.4e-23  Score=182.62  Aligned_cols=160  Identities=22%  Similarity=0.296  Sum_probs=135.9

Q ss_pred             CChHHHHHHHHHHHhcccCCCCCCCCCCCCCCC--CCc------------eeeeecCCCCcEEEEEccCCCCcccCCccC
Q 030065           18 NLTTDQSALLAFKARVVDYRSDLTNNWSISYPI--CSW------------VGISCGSRHQRVTALNLSDMGLGGTIPLHL   83 (183)
Q Consensus        18 ~~~~~~~~l~~~k~~~~~~~~~~~~~w~~~~~~--c~w------------~gv~c~~~~~~l~~L~l~~~~l~~~~~~~l   83 (183)
                      ...+|..+|++||.++.++.|....+|.. .++  |.|            .||.|.. .++|+.|+++++++.|.+|+.+
T Consensus       266 ~~~~d~~ALl~~k~~l~~~~W~~~~~~~~-~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l  343 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDGKNWRYYSGTIN-NTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAI  343 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCCSSCS-SCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGG
T ss_pred             cchHHHHHHHHHHHHcCCCCCCcCCCccc-ccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchHH
Confidence            34679999999999996443332222321 244  999            9999985 5789999999999999999999


Q ss_pred             CCCCCCcEEEe-cCccCCCC------------------------------------------------------------
Q 030065           84 GNLSFLVSLDV-AHNNFHGH------------------------------------------------------------  102 (183)
Q Consensus        84 ~~l~~L~~L~l-~~n~l~~~------------------------------------------------------------  102 (183)
                      .++++|++|++ ++|.++|.                                                            
T Consensus       344 ~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l  423 (876)
T 4ecn_A          344 GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI  423 (876)
T ss_dssp             GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCC
T ss_pred             hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccccc
Confidence            99999999999 77755443                                                            


Q ss_pred             ----------------ChhhhcCCCCCcEEEeccccccc-----------------ccCcccc--CCCCCcEEEcccCcc
Q 030065          103 ----------------LPNELGQLRRLRFIRFGFNKLSG-----------------SIPTWIG--VLSKLQTLRLYNNSF  147 (183)
Q Consensus       103 ----------------~p~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~n~l  147 (183)
                                      +|..+..+++|++|++++|++++                 .+|..++  .+++|++|+|++|.+
T Consensus       424 ~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l  503 (876)
T 4ecn_A          424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN  503 (876)
T ss_dssp             CCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT
T ss_pred             chhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC
Confidence                            78889999999999999999998                 3899887  999999999999999


Q ss_pred             cCCccccccCCCCCcEEeccCCc-ccc-cCCccc
Q 030065          148 TGPIPNSLLNLSKLEVFDAIYNV-IDG-TTTKMT  179 (183)
Q Consensus       148 ~~~~p~~~~~l~~L~~L~l~~N~-l~g-~ip~~~  179 (183)
                      .+.+|..+.++++|+.|++++|+ ++| .+|..+
T Consensus       504 ~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i  537 (876)
T 4ecn_A          504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADW  537 (876)
T ss_dssp             CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred             CccChHHHhCCCCCCEEECcCCCCcccccchHHH
Confidence            99999999999999999999998 998 788643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=6.4e-23  Score=160.99  Aligned_cols=157  Identities=20%  Similarity=0.276  Sum_probs=108.6

Q ss_pred             CCChHHHHHHHHHHHhcccCCCCCCCCC----CCCCCCCCceeeeecC--------CCCcEEEEEccCCCCcccCCccCC
Q 030065           17 SNLTTDQSALLAFKARVVDYRSDLTNNW----SISYPICSWVGISCGS--------RHQRVTALNLSDMGLGGTIPLHLG   84 (183)
Q Consensus        17 ~~~~~~~~~l~~~k~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~~--------~~~~l~~L~l~~~~l~~~~~~~l~   84 (183)
                      ....++..+|++||..+..++..+...|    .....+|.|.|+.|..        ...+++.|++++|.++ .+|..+.
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~  101 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF  101 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence            4567899999999998866776677788    4566899999999941        2356777777777777 6676677


Q ss_pred             CCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccC-------
Q 030065           85 NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLN-------  157 (183)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-------  157 (183)
                      .+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+..       
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            7777777777777777 66666667777777777777776 66666666666666666666555555554432       


Q ss_pred             --CCCCcEEeccCCcccccCCc
Q 030065          158 --LSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       158 --l~~L~~L~l~~N~l~g~ip~  177 (183)
                        +++|++|++++|.++ .+|.
T Consensus       180 ~~l~~L~~L~L~~n~l~-~lp~  200 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIR-SLPA  200 (328)
T ss_dssp             EESTTCCEEEEEEECCC-CCCG
T ss_pred             ccCCCCCEEECcCCCcC-cchH
Confidence              555555555555555 4443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=2.1e-20  Score=139.60  Aligned_cols=138  Identities=20%  Similarity=0.222  Sum_probs=117.1

Q ss_pred             CCCCCCCCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCC
Q 030065           41 TNNWSISYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLR  111 (183)
Q Consensus        41 ~~~w~~~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~  111 (183)
                      ...|......|.|.++.|...         ..++++|++++|.+++..|..+..+++|++|++++|.++...+..+..++
T Consensus         9 ~~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~   88 (229)
T 3e6j_A            9 HSAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT   88 (229)
T ss_dssp             --CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence            445667888999999999742         25799999999999987788899999999999999999855445678999


Q ss_pred             CCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          112 RLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       112 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      +|++|++++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++ +|...|
T Consensus        89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~  155 (229)
T 3e6j_A           89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAF  155 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC-CCTTTT
T ss_pred             CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCc-cCHHHH
Confidence            9999999999999655666789999999999999999 889999999999999999999994 454444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.81  E-value=8e-20  Score=132.99  Aligned_cols=134  Identities=25%  Similarity=0.361  Sum_probs=116.1

Q ss_pred             CCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCc-cCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEE
Q 030065           47 SYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPL-HLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFI  116 (183)
Q Consensus        47 ~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  116 (183)
                      ....|.|..+.|...         ..++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|
T Consensus         4 ~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   83 (192)
T 1w8a_A            4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence            345678888888642         14789999999999855443 37899999999999999998889999999999999


Q ss_pred             EecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       117 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      ++++|++++..+..+..+++|++|+|++|++++..|..+..+++|++|++++|.+++..+...|
T Consensus        84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~  147 (192)
T 1w8a_A           84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH
Confidence            9999999987778899999999999999999988888999999999999999999987765443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=5.6e-19  Score=131.15  Aligned_cols=131  Identities=18%  Similarity=0.202  Sum_probs=111.1

Q ss_pred             CCCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEE
Q 030065           46 ISYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFI  116 (183)
Q Consensus        46 ~~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  116 (183)
                      +..+.|.|..+.|...         ..+++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus         6 P~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L   85 (220)
T 2v9t_B            6 PAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL   85 (220)
T ss_dssp             CTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE
T ss_pred             CCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE
Confidence            3456778888888642         1478999999999996666678899999999999999997778899999999999


Q ss_pred             EecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065          117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       117 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      ++++|+++...+..|..+++|++|+|++|.+++..|..+..+++|+.|++++|++++..+
T Consensus        86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B           86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence            999999994444557889999999999999997777888999999999999999995544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=8.2e-19  Score=128.78  Aligned_cols=133  Identities=20%  Similarity=0.224  Sum_probs=104.1

Q ss_pred             CCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEE
Q 030065           47 SYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR  117 (183)
Q Consensus        47 ~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  117 (183)
                      ..+.|.|.++.|...         ..++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus         3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (208)
T 2o6s_A            3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN   82 (208)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence            345688999999742         24689999999999855555577889999999999999855555678899999999


Q ss_pred             ecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       118 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      +++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ +|...|
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~  144 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVF  144 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTT
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHh
Confidence            99999985555567888999999999999985444457788899999999998884 444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.78  E-value=1e-18  Score=125.28  Aligned_cols=129  Identities=22%  Similarity=0.253  Sum_probs=109.2

Q ss_pred             CCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEE
Q 030065           47 SYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR  117 (183)
Q Consensus        47 ~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  117 (183)
                      ..+.|.|.++.|...         ..+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus         3 ~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A            3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             TTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence            345678999999742         25799999999999965555678899999999999999965556678999999999


Q ss_pred             ecccccccccCccccCCCCCcEEEcccCcccCCcccc-ccCCCCCcEEeccCCcccccCC
Q 030065          118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNS-LLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       118 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      +++|++++..+..+..+++|++|++++|.++ .+|.. +..+++|+.|++++|.+.+..|
T Consensus        83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           83 LHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999999666666889999999999999999 45554 5789999999999999998766

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.4e-18  Score=129.07  Aligned_cols=129  Identities=18%  Similarity=0.176  Sum_probs=77.3

Q ss_pred             CCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCc-cCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEE
Q 030065           48 YPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPL-HLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR  117 (183)
Q Consensus        48 ~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  117 (183)
                      .+.|.|..+.|...         ...++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus         8 ~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A            8 KCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence            34556666666431         12455666666666644332 245666666666666666654444566666666666


Q ss_pred             ecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065          118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       118 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      +++|++++..+..+..+++|++|+|++|.+++..|..+..+++|+.|++++|++++..|
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence            66666665444556666666666666666665445556666666666666666665444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.75  E-value=8.9e-18  Score=122.31  Aligned_cols=126  Identities=20%  Similarity=0.247  Sum_probs=107.4

Q ss_pred             CCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEE
Q 030065           47 SYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR  117 (183)
Q Consensus        47 ~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  117 (183)
                      ..+.|.|..+.|...         ..++++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus         6 ~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~   84 (193)
T 2wfh_A            6 TECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI   84 (193)
T ss_dssp             TTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence            345667777777632         257999999999998 7888899999999999999999977777899999999999


Q ss_pred             ecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065          118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       118 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      +++|++++..|..|..+++|++|+|++|.+++..+..+..+++|+.|++++|.+..
T Consensus        85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99999997777789999999999999999994433457889999999999998864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.74  E-value=2e-18  Score=134.42  Aligned_cols=118  Identities=27%  Similarity=0.425  Sum_probs=108.8

Q ss_pred             CCcEEEEEccC-CCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           62 HQRVTALNLSD-MGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        62 ~~~l~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      .+++++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            46899999995 99998999999999999999999999998999999999999999999999998899999999999999


Q ss_pred             EcccCcccCCccccccCCC-CCcEEeccCCcccccCCccc
Q 030065          141 RLYNNSFTGPIPNSLLNLS-KLEVFDAIYNVIDGTTTKMT  179 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~-~L~~L~l~~N~l~g~ip~~~  179 (183)
                      ++++|.+++.+|..+..++ +|+.|++++|.++|.+|..+
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~  194 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence            9999999989999999988 89999999999998888754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.73  E-value=3.8e-17  Score=124.54  Aligned_cols=109  Identities=22%  Similarity=0.206  Sum_probs=67.4

Q ss_pred             cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  143 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  143 (183)
                      .+++|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            46777777777774444466777777777777777773333344566677777777776664334445566666666666


Q ss_pred             cCcccCCccccccCCCCCcEEeccCCccc
Q 030065          144 NNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       144 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      +|.+++..+..+..+++|++|++++|.++
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence            66666433344455555555555555555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=1.5e-17  Score=123.44  Aligned_cols=117  Identities=15%  Similarity=0.155  Sum_probs=106.5

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ..+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|
T Consensus        55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  134 (220)
T 2v70_A           55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL  134 (220)
T ss_dssp             GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred             cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence            35789999999999997777789999999999999999997777789999999999999999998778899999999999


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      +|++|.+++..|..+..+++|+.|++++|.+++..+-
T Consensus       135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             ECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            9999999977788899999999999999999866553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=9.8e-18  Score=144.66  Aligned_cols=119  Identities=34%  Similarity=0.533  Sum_probs=95.9

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      ++++.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..++.+++|++|++
T Consensus       442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  521 (768)
T 3rgz_A          442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL  521 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence            46677777777777777777777777888888888887777777888888888888888888888888888888888888


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                      ++|.++|.+|..+..+++|+.|++++|+++|.+|..+|.
T Consensus       522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~  560 (768)
T 3rgz_A          522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK  560 (768)
T ss_dssp             CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred             CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence            888888888888888888888888888888888887654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.73  E-value=1.4e-17  Score=130.47  Aligned_cols=115  Identities=21%  Similarity=0.223  Sum_probs=87.8

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus       183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence            45666666666666 66666777777777777777777 45666777788888888887777777777778888888888


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccCCccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMT  179 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~  179 (183)
                      ++|++.+.+|..+.++++|+.|++++|++.|.+|+.+
T Consensus       261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            8887777788778888888888888888888888754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=7.4e-17  Score=121.68  Aligned_cols=113  Identities=22%  Similarity=0.227  Sum_probs=77.7

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+|
T Consensus        59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  138 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL  138 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence            56777777777777555555666777777777777777555555667777777777777777444445667777777777


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccC
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTT  175 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i  175 (183)
                      ++|++++..+..+..+++|++|++++|++++..
T Consensus       139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A          139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            777777443335677777888888888777443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.71  E-value=3.4e-17  Score=132.88  Aligned_cols=118  Identities=19%  Similarity=0.181  Sum_probs=90.6

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCC-hhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHL-PNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      +++++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            56888888888888777777888888888888888886555 44677788888888888888866677788888888888


Q ss_pred             cccCcccCCcccc--ccCCCCCcEEeccCCcccccCCcccc
Q 030065          142 LYNNSFTGPIPNS--LLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       142 L~~n~l~~~~p~~--~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      +++|.+++..|..  +..+++|++|++++|.+++..|..+|
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  150 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF  150 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGG
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCccccc
Confidence            8888887655544  67777888888888888766665433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.71  E-value=3.3e-17  Score=135.84  Aligned_cols=118  Identities=19%  Similarity=0.196  Sum_probs=86.1

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..++.+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            46788888888887666677777888888888888887666667777888888888888877555555777778888888


Q ss_pred             ccCcccC-CccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          143 YNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       143 ~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      ++|.+++ ..|..+.++++|++|++++|.+.+.+|...|
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  144 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF  144 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhh
Confidence            8887774 3456677777777777777775556654433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.70  E-value=1.7e-16  Score=119.75  Aligned_cols=109  Identities=19%  Similarity=0.191  Sum_probs=50.2

Q ss_pred             cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  143 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  143 (183)
                      .++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            34445555555444333344444455555555555544333344444455555555555443333344444455555555


Q ss_pred             cCcccCCccccccCCCCCcEEeccCCccc
Q 030065          144 NNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       144 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      +|.+++..+..+..+++|+.|++++|+++
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCcCC
Confidence            55444222222344445555555555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=6.8e-17  Score=128.09  Aligned_cols=133  Identities=21%  Similarity=0.207  Sum_probs=93.1

Q ss_pred             CCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCC-CCCCCcEEEecCccCCCCChhhhcCCCCCcEE
Q 030065           47 SYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLG-NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFI  116 (183)
Q Consensus        47 ~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  116 (183)
                      ..+.|.+..+.|...         ...++.|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|++|
T Consensus        14 ~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   93 (361)
T 2xot_A           14 ANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL   93 (361)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence            345566777777531         13467788888888755555555 77788888888888875555667777888888


Q ss_pred             EecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       117 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      ++++|++++..+..|..+++|++|+|++|.+++..|..+..+++|+.|++++|.++ .+|..+|
T Consensus        94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~  156 (361)
T 2xot_A           94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELI  156 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGT
T ss_pred             ECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHh
Confidence            88888877555556777777778888777777555666777777777777777777 3555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.70  E-value=2.3e-16  Score=120.41  Aligned_cols=116  Identities=17%  Similarity=0.172  Sum_probs=74.8

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ..+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  162 (272)
T 3rfs_A           83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL  162 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence            34567777777777775444445667777777777777775555556667777777777777764444455666777777


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      ++++|++++..+..+..+++|+.|++++|++++..|
T Consensus       163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            777777764444445666677777777777765433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.70  E-value=8e-17  Score=134.93  Aligned_cols=112  Identities=17%  Similarity=0.075  Sum_probs=95.3

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      ..+++|++++|.++...+..|.++++|++|++++|.|++..|..|..+++|++|++++|++++..+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            47899999999999666677999999999999999999666667899999999999999998555567889999999999


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~  174 (183)
                      ++|++++..+..++++++|++|++++|.+++.
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~  163 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSF  163 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence            99999854445688899999999999988753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=8.4e-18  Score=144.36  Aligned_cols=113  Identities=27%  Similarity=0.409  Sum_probs=102.8

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      ..++.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..++.+++|++|+|
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred             CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence            56778999999998 78888889999999999999999 88999999999999999999999 88999999999999999


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccCCccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMT  179 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~  179 (183)
                      ++|.++ .+|..++.+++|+.|+|++|.|+|.+|..+
T Consensus       301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            999998 889999999999999999999998887654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=6.7e-17  Score=112.52  Aligned_cols=112  Identities=18%  Similarity=0.209  Sum_probs=96.1

Q ss_pred             CcEEEEEccCCCCc-ccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLG-GTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            57889999999998 78888888899999999999999854  6788899999999999999976888777899999999


Q ss_pred             cccCcccCC-ccccccCCCCCcEEeccCCcccccCC
Q 030065          142 LYNNSFTGP-IPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       142 L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      +++|.+++. .+..+..+++|++|++++|.+++..+
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            999999842 33778899999999999999986544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=2.4e-16  Score=116.85  Aligned_cols=113  Identities=18%  Similarity=0.163  Sum_probs=100.9

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ..+++++|++++|.+++..|..|..+++|++|++++|.++...+..+..+++|++|++++|++++..|..|..+++|++|
T Consensus        54 ~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  133 (220)
T 2v9t_B           54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL  133 (220)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence            34789999999999998888899999999999999999995444457889999999999999998778899999999999


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      +|++|.+++..+..+..+++|+.|++++|.+..
T Consensus       134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            999999996555668899999999999999863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.68  E-value=5.9e-16  Score=119.34  Aligned_cols=118  Identities=28%  Similarity=0.267  Sum_probs=94.5

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ..+++++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence            3467888888888887 777778888888999999998886555678888899999999998885555667788889999


Q ss_pred             EcccCcccCCccc-cccCCCCCcEEeccCCcccccCCccccc
Q 030065          141 RLYNNSFTGPIPN-SLLNLSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       141 ~L~~n~l~~~~p~-~~~~l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                      +|++|+++ .+|. .+..+++|+.|++++|+++ .+|..+|.
T Consensus       154 ~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~  193 (290)
T 1p9a_G          154 SLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (290)
T ss_dssp             ECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             ECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence            99999888 5554 4567889999999999888 67776653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=2.1e-16  Score=114.85  Aligned_cols=111  Identities=22%  Similarity=0.238  Sum_probs=98.1

Q ss_pred             EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChh-hhcCCCCCcEEEecccccccccCccccCCCCCcEEEccc
Q 030065           66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPN-ELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN  144 (183)
Q Consensus        66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~  144 (183)
                      +++++++++++ .+|..+..  ++++|++++|.+++..+. .+..+++|++|++++|++++..|..+..+++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            68999999997 88887655  899999999999955443 388999999999999999988889999999999999999


Q ss_pred             CcccCCccccccCCCCCcEEeccCCcccccCCccc
Q 030065          145 NSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMT  179 (183)
Q Consensus       145 n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~  179 (183)
                      |++++..|..+..+++|++|++++|++++.+|..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  122 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence            99997667778999999999999999998877643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.68  E-value=1.3e-16  Score=125.77  Aligned_cols=135  Identities=20%  Similarity=0.263  Sum_probs=95.9

Q ss_pred             CCCCCCCCCCceeeeecCC-----------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCC
Q 030065           43 NWSISYPICSWVGISCGSR-----------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLR  111 (183)
Q Consensus        43 ~w~~~~~~c~w~gv~c~~~-----------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~  111 (183)
                      .|......|.|.|+ |+..           .+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..++
T Consensus        22 ~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (353)
T 2z80_A           22 SSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG  100 (353)
T ss_dssp             -----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence            35556677888876 5421           24788899999888865555788888888888888888866667788888


Q ss_pred             CCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccc--cccCCCCCcEEeccCCcccccCCccc
Q 030065          112 RLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPN--SLLNLSKLEVFDAIYNVIDGTTTKMT  179 (183)
Q Consensus       112 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~ip~~~  179 (183)
                      +|++|++++|++++..+..+..+++|++|++++|.++ .+|.  .+..+++|++|++++|+..+.++...
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  169 (353)
T 2z80_A          101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD  169 (353)
T ss_dssp             TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred             CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHH
Confidence            8888888888888433344778888888888888888 5665  57778888888888874333444333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.68  E-value=3.6e-16  Score=111.51  Aligned_cols=108  Identities=19%  Similarity=0.199  Sum_probs=92.1

Q ss_pred             EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccC
Q 030065           66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN  145 (183)
Q Consensus        66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n  145 (183)
                      +.+++++++++ .+|..+.  +++++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            46788888888 6787664  68999999999999777888999999999999999999655566789999999999999


Q ss_pred             cccCCccccccCCCCCcEEeccCCcccccCC
Q 030065          146 SFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       146 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      ++++..+..+..+++|++|++++|.++...+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9995444468899999999999999986544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.67  E-value=6.2e-16  Score=117.97  Aligned_cols=117  Identities=21%  Similarity=0.229  Sum_probs=102.8

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ..+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus       107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  186 (272)
T 3rfs_A          107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL  186 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence            34789999999999996666668899999999999999996666667899999999999999997666778899999999


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      ++++|.+++..|..+..+++|+.|++++|.+.+..|.
T Consensus       187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            9999999976666688999999999999998877764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=7.3e-16  Score=112.12  Aligned_cols=111  Identities=23%  Similarity=0.292  Sum_probs=98.5

Q ss_pred             EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccC
Q 030065           66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN  145 (183)
Q Consensus        66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n  145 (183)
                      +.+++++++++ .+|..+.  +.++.|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57899999999 7887664  58999999999999 88899999999999999999999766778999999999999999


Q ss_pred             cccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065          146 SFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       146 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                      .+++..|..+..+++|+.|++++|.++ .+|...|.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~  123 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFN  123 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTT
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhh
Confidence            999766677999999999999999999 56665553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=1.6e-16  Score=112.72  Aligned_cols=111  Identities=23%  Similarity=0.276  Sum_probs=84.7

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccC--ccccCCCCCcE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQT  139 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~  139 (183)
                      .+++++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++ +|  ..+..+++|++
T Consensus        48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKS  124 (168)
T ss_dssp             GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCE
T ss_pred             CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCE
Confidence            36788888888888744  667778888888888888886677777678888888888888874 33  66778888888


Q ss_pred             EEcccCcccCCccc----cccCCCCCcEEeccCCcccccCCc
Q 030065          140 LRLYNNSFTGPIPN----SLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       140 L~L~~n~l~~~~p~----~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      |++++|.++ .+|.    .+..+++|++|++++|.+. .+|.
T Consensus       125 L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          125 LDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             EECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             EEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            888888888 4444    6777888888888888876 4454

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.67  E-value=6.6e-16  Score=113.17  Aligned_cols=117  Identities=21%  Similarity=0.194  Sum_probs=98.3

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ...++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  129 (208)
T 2o6s_A           50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL  129 (208)
T ss_dssp             TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence            34789999999999995545557889999999999999996555567899999999999999996555668899999999


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      ++++|.+++..+..+..+++|+.|++++|.+.+..|.
T Consensus       130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  166 (208)
T 2o6s_A          130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  166 (208)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred             ECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence            9999999954444578899999999999988776653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.65  E-value=1.1e-15  Score=117.12  Aligned_cols=111  Identities=23%  Similarity=0.207  Sum_probs=72.6

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCcc-CCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN-FHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      +++++|++++|.+++..+..+..+++|++|++++|. +....|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence            556666666666665556666666667777777665 5544455666667777777777777655556666677777777


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      +++|.+++..+..+..+++|+.|++++|++++
T Consensus       136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A          136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence            77777764333446667777777777777763

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.65  E-value=1e-15  Score=109.67  Aligned_cols=105  Identities=24%  Similarity=0.279  Sum_probs=91.8

Q ss_pred             EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccC
Q 030065           66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN  145 (183)
Q Consensus        66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n  145 (183)
                      +.+++++++++ .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            57899999997 7888765  79999999999999777888999999999999999999544455789999999999999


Q ss_pred             cccCCccc-cccCCCCCcEEeccCCccccc
Q 030065          146 SFTGPIPN-SLLNLSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       146 ~l~~~~p~-~~~~l~~L~~L~l~~N~l~g~  174 (183)
                      +++ .+|. .+..+++|++|++++|.+...
T Consensus        92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLK-SIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCC-CCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccc-eeCHHHhccccCCCEEEeCCCCcccc
Confidence            999 4555 488999999999999999854

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.65  E-value=1e-15  Score=114.08  Aligned_cols=115  Identities=23%  Similarity=0.180  Sum_probs=100.3

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ...++++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus        62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  140 (229)
T 3e6j_A           62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL  140 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred             CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence            3478999999999998444455788999999999999999666666789999999999999999 889999999999999


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      +|++|++++..+..+..+++|+.|++++|.+.+..+
T Consensus       141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            999999995444568889999999999999986654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.65  E-value=3.7e-16  Score=127.16  Aligned_cols=118  Identities=19%  Similarity=0.076  Sum_probs=93.8

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      .++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            57899999999999877888999999999999999999777788999999999999999999555566888999999999


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      ++|.+++..+..+..+++|+.|++++|+..+.+|...|
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~  192 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF  192 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc
Confidence            99998843333556666666666666544445554433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.64  E-value=1.1e-15  Score=128.10  Aligned_cols=115  Identities=23%  Similarity=0.227  Sum_probs=73.4

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.+++..|..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..++.+++|++|++
T Consensus        56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  135 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV  135 (606)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred             ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence            45666666666666555555666666666666666666555666666666666666666666444455666666667777


Q ss_pred             ccCcccC-CccccccCCCCCcEEeccCCcccccCCc
Q 030065          143 YNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       143 ~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      ++|.+++ .+|..+.++++|++|++++|++++..|.
T Consensus       136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A          136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             CCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence            6666654 4566677777777777777777654443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.64  E-value=1.1e-15  Score=123.95  Aligned_cols=116  Identities=16%  Similarity=0.145  Sum_probs=93.1

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  377 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA  377 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence            36788888888888877677788888888888888888866677788888888888888888877777888888888888


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      +++|++++..+..+..+++|+.|++++|++++.+|.
T Consensus       378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            888888843334457788888888888888888774

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=1.1e-15  Score=111.28  Aligned_cols=106  Identities=17%  Similarity=0.285  Sum_probs=47.5

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccc-cccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK-LSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~  141 (183)
                      +++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|+.|+
T Consensus        88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~  165 (197)
T 4ezg_A           88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLN  165 (197)
T ss_dssp             TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEE
T ss_pred             CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEE
Confidence            344444444444444344444444444444444444444344444444444444444444 33 333 344444444455


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      +++|.++ .++ .+..+++|+.|++++|++.
T Consensus       166 l~~n~i~-~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          166 IQFDGVH-DYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CTTBCCC-CCT-TGGGCSSCCEEEECBC---
T ss_pred             CCCCCCc-ChH-HhccCCCCCEEEeeCcccC
Confidence            4444444 222 3444444555555544443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.64  E-value=1e-15  Score=125.04  Aligned_cols=112  Identities=17%  Similarity=0.125  Sum_probs=70.2

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      .+++.|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            35666777777776555566666667777777777666555666666666666666666666333334566666666666


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~  174 (183)
                      ++|.+++..|..+..+++|+.|++++|.+++.
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  143 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYI  143 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCcccee
Confidence            66666654455555666666666666665543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=2e-15  Score=126.87  Aligned_cols=111  Identities=18%  Similarity=0.167  Sum_probs=80.5

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|++|+|
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            35677777777777666667777777788888877777666666777777888888877777333344577777888888


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      ++|.+++..|..+..+++|+.|++++|.+++
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            8887776666667777778888888877774

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.63  E-value=1.2e-15  Score=117.90  Aligned_cols=115  Identities=27%  Similarity=0.307  Sum_probs=60.8

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCC-CChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG-HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      +++++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  205 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  205 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence            345555555555554444445555555555555555543 2444455555555555555555544455555555555555


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      +++|.+++..+..+..+++|+.|++++|++++.+|.
T Consensus       206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred             CCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence            555555533333445555555555555555554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.63  E-value=3.1e-15  Score=113.93  Aligned_cols=110  Identities=22%  Similarity=0.321  Sum_probs=61.4

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  164 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL  164 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence            44555555555555333333445555555565555555444444555666666666666665333334556666666666


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      ++|.+++..+..+..+++|+.|++++|.++
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence            666666333334556666666666666666

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.63  E-value=1e-15  Score=114.46  Aligned_cols=108  Identities=16%  Similarity=0.215  Sum_probs=71.5

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCcc-CCCCChhhhcCCCCCcEEEecc-cccccccCccccCCCCCcEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN-FHGHLPNELGQLRRLRFIRFGF-NKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ..+++|++++|.+++..+..+..+++|++|++++|. ++...+..+..+++|++|++++ |++++..+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            367778888888775555567777778888888776 6644444677777777777777 77774444566677777777


Q ss_pred             EcccCcccCCccccccCCCCCc---EEeccCC-ccc
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLE---VFDAIYN-VID  172 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~---~L~l~~N-~l~  172 (183)
                      ++++|.++ .+|. +..+++|+   .|++++| .++
T Consensus       111 ~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~  144 (239)
T 2xwt_C          111 GIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMT  144 (239)
T ss_dssp             EEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred             eCCCCCCc-cccc-cccccccccccEEECCCCcchh
Confidence            77777666 3554 44455554   5555555 444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.63  E-value=1.4e-15  Score=127.52  Aligned_cols=111  Identities=18%  Similarity=0.033  Sum_probs=92.3

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      ..+++|++++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            46888899999888777778888888999999988888777888888888888888888888777888888888888888


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      ++|.+++..|..+.++++|++|++++|.+++
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~  143 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISS  143 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccc
Confidence            8888885446667788888888888888875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.63  E-value=1.9e-15  Score=126.62  Aligned_cols=117  Identities=16%  Similarity=0.094  Sum_probs=104.4

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      .++++|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            67999999999999777778999999999999999999777888999999999999999999777899999999999999


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccc-cCCccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG-TTTKMT  179 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g-~ip~~~  179 (183)
                      ++|.+++..|..+.++++|++|++++|.+++ .+|..+
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~  149 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF  149 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhH
Confidence            9999986555779999999999999999986 567643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.63  E-value=2.8e-15  Score=114.77  Aligned_cols=116  Identities=19%  Similarity=0.168  Sum_probs=78.9

Q ss_pred             CCcEEEEEccCCC-CcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           62 HQRVTALNLSDMG-LGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        62 ~~~l~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      .+++++|++++|. ++...+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  158 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL  158 (285)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence            3567777777776 664445666777777777777777776556667777777777777777774444556677777777


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      ++++|.+++..+..+..+++|+.|++++|.+++..|.
T Consensus       159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  195 (285)
T 1ozn_A          159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH  195 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence            7777777733333466777777777777777765554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.63  E-value=1.3e-15  Score=132.67  Aligned_cols=124  Identities=20%  Similarity=0.168  Sum_probs=72.5

Q ss_pred             CCceeeeecCCCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCC-hhhhcCCCCCcEEEecccccccccCc
Q 030065           51 CSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHL-PNELGQLRRLRFIRFGFNKLSGSIPT  129 (183)
Q Consensus        51 c~w~gv~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~  129 (183)
                      |.|+.|.+  ..+++++|++++|.+++..+..+..+++|++|++++|...+.+ |..+..+++|++|++++|.+++..|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            34444444  2256667777777666555566666666666666666444344 44566666666666666666655556


Q ss_pred             cccCCCCCcEEEcccCcccCCcccc--ccCCCCCcEEeccCCcccccCC
Q 030065          130 WIGVLSKLQTLRLYNNSFTGPIPNS--LLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       130 ~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      .|.++++|++|+|++|.+++.+|..  +..+++|++|++++|.+++..|
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~  140 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL  140 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc
Confidence            6666666666666666665544443  5556666666666666554444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.63  E-value=1.3e-15  Score=120.68  Aligned_cols=115  Identities=22%  Similarity=0.169  Sum_probs=100.8

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ...+++.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..|..+++|+.|
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence            45789999999999997766779999999999999999996666678999999999999999997778899999999999


Q ss_pred             EcccCcccCCccccc----cCCCCCcEEeccCCcccccCCc
Q 030065          141 RLYNNSFTGPIPNSL----LNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~----~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      +|++|.++ .+|..+    ..+++|+.|++++|+|+ .+|.
T Consensus       142 ~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~  180 (361)
T 2xot_A          142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPL  180 (361)
T ss_dssp             ECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC-CCCH
T ss_pred             ECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC-ccCH
Confidence            99999999 577654    57999999999999999 4553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.62  E-value=3e-16  Score=132.90  Aligned_cols=126  Identities=21%  Similarity=0.290  Sum_probs=112.0

Q ss_pred             CCCceeeee-cCCCCcEEEEEccCCCCccc-----------------CCccCC--CCCCCcEEEecCccCCCCChhhhcC
Q 030065           50 ICSWVGISC-GSRHQRVTALNLSDMGLGGT-----------------IPLHLG--NLSFLVSLDVAHNNFHGHLPNELGQ  109 (183)
Q Consensus        50 ~c~w~gv~c-~~~~~~l~~L~l~~~~l~~~-----------------~~~~l~--~l~~L~~L~l~~n~l~~~~p~~~~~  109 (183)
                      .+...|+.- ....+++++|++++|.+++.                 +|..+.  ++++|++|++++|.+.+.+|..+..
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            345556432 12457899999999999985                 999999  9999999999999999999999999


Q ss_pred             CCCCcEEEecccc-ccc-ccCccccCC------CCCcEEEcccCcccCCccc--cccCCCCCcEEeccCCcccccCC
Q 030065          110 LRRLRFIRFGFNK-LSG-SIPTWIGVL------SKLQTLRLYNNSFTGPIPN--SLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       110 l~~L~~L~l~~n~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      +++|++|++++|+ ++| .+|..++.+      ++|++|++++|.++ .+|.  .+..+++|+.|++++|.++|.+|
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence            9999999999998 998 889888776      99999999999999 8998  89999999999999999999998

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.62  E-value=1.9e-15  Score=126.56  Aligned_cols=117  Identities=21%  Similarity=0.180  Sum_probs=103.1

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..|+++++|++|+
T Consensus        75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~  154 (635)
T 4g8a_A           75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  154 (635)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence            47899999999999966666789999999999999999966666789999999999999999965556799999999999


Q ss_pred             cccCcccC-CccccccCCCCCcEEeccCCcccccCCcc
Q 030065          142 LYNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       142 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~~  178 (183)
                      +++|.+++ .+|..+..+++|++|++++|++++..|..
T Consensus       155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  192 (635)
T 4g8a_A          155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  192 (635)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             cccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence            99999975 46788899999999999999999765543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.62  E-value=2.3e-15  Score=114.76  Aligned_cols=114  Identities=22%  Similarity=0.195  Sum_probs=81.4

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  130 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence            35677777777777755555667777777777777777755556677777777777777777754444677777788888


Q ss_pred             cccCcccC-CccccccCCCCCcEEeccCCcccccC
Q 030065          142 LYNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDGTT  175 (183)
Q Consensus       142 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~i  175 (183)
                      +++|.+++ .+|..+..+++|+.|++++|.+++..
T Consensus       131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            88887774 35777777788888888888777543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=1.3e-15  Score=127.39  Aligned_cols=109  Identities=26%  Similarity=0.329  Sum_probs=100.4

Q ss_pred             cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  143 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  143 (183)
                      .++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|++++ +| .++.+++|++|+|+
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            47889999999994 776 999999999999999999 899999999999999999999995 77 89999999999999


Q ss_pred             cCcccCCc-cccccCCCCCcEEeccCCcccccCCc
Q 030065          144 NNSFTGPI-PNSLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       144 ~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      +|.+++.. |..+..+++|+.|++++|.+++.+|.
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            99999665 89999999999999999999987664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.7e-15  Score=107.33  Aligned_cols=111  Identities=20%  Similarity=0.237  Sum_probs=99.7

Q ss_pred             CcEEEEEccCCCCc-ccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLG-GTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            67999999999998 78888888999999999999999954  7788999999999999999977888888899999999


Q ss_pred             cccCcccCCcc--ccccCCCCCcEEeccCCcccccCC
Q 030065          142 LYNNSFTGPIP--NSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       142 L~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      +++|.++ .+|  ..+..+++|+.|++++|.+++..+
T Consensus       102 Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A          102 LSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             CBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             ccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            9999999 444  678999999999999999996544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.61  E-value=4.2e-15  Score=113.29  Aligned_cols=116  Identities=16%  Similarity=0.072  Sum_probs=102.6

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      .++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46999999999999666668999999999999999999666678999999999999999999777788999999999999


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCccccc-CCcc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT-TTKM  178 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~-ip~~  178 (183)
                      ++|.+++..+..+..+++|++|++++|.+++. +|..
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~  144 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY  144 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence            99999965555789999999999999999863 5654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.61  E-value=4.5e-15  Score=114.37  Aligned_cols=116  Identities=28%  Similarity=0.310  Sum_probs=87.2

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      ..++++|++++|.+++ ++.. ..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|+
T Consensus        54 l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~  130 (290)
T 1p9a_G           54 YTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (290)
T ss_dssp             CTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence            4567777777777763 3332 56777888888888887 6777777888888888888888855556788888888899


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                      +++|++++..+..+..+++|+.|++++|+++ .+|..+|.
T Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~  169 (290)
T 1p9a_G          131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN  169 (290)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTT
T ss_pred             CCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHhc
Confidence            9888888544445677888999999999888 56665553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.61  E-value=6.7e-15  Score=115.06  Aligned_cols=123  Identities=19%  Similarity=0.226  Sum_probs=104.1

Q ss_pred             CCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEE
Q 030065           47 SYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR  117 (183)
Q Consensus        47 ~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  117 (183)
                      ..+.|.|..+.|...         .++++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        29 ~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           29 FGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             SSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             CCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            345678999988642         25799999999999977677899999999999999999977788999999999999


Q ss_pred             ecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       118 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      +++|+++ .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus       109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            9999998 7776654  78999999999998444445788999999999999886

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.60  E-value=4.8e-15  Score=120.17  Aligned_cols=128  Identities=18%  Similarity=0.123  Sum_probs=96.3

Q ss_pred             ceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEeccccc
Q 030065           53 WVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKL  123 (183)
Q Consensus        53 w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  123 (183)
                      |..+.|...         ..+++.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            556777531         25688899999999877778888899999999999999876677888899999999999998


Q ss_pred             ccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          124 SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       124 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      +...+..+..+++|++|++++|.++...+..+..+++|+.|++++|+..+.+|...|
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~  181 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF  181 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh
Confidence            854455688888899999998888843333566667777777776554445555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=1.4e-14  Score=103.58  Aligned_cols=112  Identities=18%  Similarity=0.213  Sum_probs=94.3

Q ss_pred             EEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEccc
Q 030065           65 VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN  144 (183)
Q Consensus        65 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~  144 (183)
                      .+.+++++++++ .+|..+.  ++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            467899999998 6776544  6899999999999966556678999999999999999955556678999999999999


Q ss_pred             CcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          145 NSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       145 n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      |.+++..+..+..+++|+.|++++|+++ .+|...|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~  120 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIF  120 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTT
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHh
Confidence            9999555556789999999999999999 5565554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.60  E-value=2.4e-15  Score=116.17  Aligned_cols=115  Identities=17%  Similarity=0.178  Sum_probs=104.0

Q ss_pred             CCcEEEEEccCCCCcc-cCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           62 HQRVTALNLSDMGLGG-TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      .+++++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|
T Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  228 (306)
T 2z66_A          149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  228 (306)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred             CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence            4789999999999986 578889999999999999999997778889999999999999999997666688999999999


Q ss_pred             EcccCcccCCccccccCCC-CCcEEeccCCcccccCC
Q 030065          141 RLYNNSFTGPIPNSLLNLS-KLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~-~L~~L~l~~N~l~g~ip  176 (183)
                      ++++|.+++..|..+..++ +|+.|++++|.+++..+
T Consensus       229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             ECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            9999999988888888885 99999999999987544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.60  E-value=4.1e-15  Score=126.25  Aligned_cols=113  Identities=25%  Similarity=0.257  Sum_probs=57.5

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      .++++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            34555666665555433344555555555555555555444555555555555555555555222223555555555555


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccC
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTT  175 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i  175 (183)
                      ++|.+++..|..+.++++|++|++++|.+++.+
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  137 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK  137 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccC
Confidence            555554333334455555555555555554433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.59  E-value=3.4e-15  Score=124.02  Aligned_cols=118  Identities=24%  Similarity=0.283  Sum_probs=81.7

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCC-CCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFH-GHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      +++++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus       421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  500 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  500 (570)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence            45666666666666556666666777777777777765 45666667777777777777777766666777777777777


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      +++|++++..|..+..+++|+.|++++|.+++.+|...|
T Consensus       501 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             CCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence            777777755555567777777777777777777765443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.58  E-value=1.2e-14  Score=113.39  Aligned_cols=113  Identities=22%  Similarity=0.294  Sum_probs=78.7

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.++ .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus       171 ~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  247 (330)
T 1xku_A          171 KKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  247 (330)
T ss_dssp             TTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             CCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence            44555555555555 3444332  56677777777777655667777788888888888887655666777788888888


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      ++|.++ .+|..+..+++|++|++++|+++ .+|...|
T Consensus       248 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~-~~~~~~f  283 (330)
T 1xku_A          248 NNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDF  283 (330)
T ss_dssp             CSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSS
T ss_pred             CCCcCc-cCChhhccCCCcCEEECCCCcCC-ccChhhc
Confidence            888887 77777777888888888888887 4455444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.57  E-value=1.2e-14  Score=119.79  Aligned_cols=116  Identities=18%  Similarity=0.223  Sum_probs=76.9

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCC--CChhhhcCCCCCcEEEecccccccccCcc-ccCCCC-
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG--HLPNELGQLRRLRFIRFGFNKLSGSIPTW-IGVLSK-  136 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~-  136 (183)
                      ..+++++|++++|.+++..|..+..+++|++|++++|.+++  .+|..+..+++|++|++++|.+++.+|.. +..+++ 
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            34667888888888877677777778888888888888775  44566777777777777777777545543 444444 


Q ss_pred             ---------------------CcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065          137 ---------------------LQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       137 ---------------------L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~  178 (183)
                                           |++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~  462 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG  462 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred             CEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence                                 455555555555 45555556666666666666666 45554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.57  E-value=1.2e-14  Score=105.70  Aligned_cols=109  Identities=19%  Similarity=0.268  Sum_probs=89.9

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++++|++++|.++ .+ +.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus        65 l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           65 AHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             CTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             CCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence            467888898888765 33 4678888899999999998876778888889999999999999877778888889999999


Q ss_pred             cccCc-ccCCccccccCCCCCcEEeccCCccccc
Q 030065          142 LYNNS-FTGPIPNSLLNLSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       142 L~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~g~  174 (183)
                      +++|. ++ .+| .+..+++|+.|++++|.+++.
T Consensus       143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~  174 (197)
T 4ezg_A          143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY  174 (197)
T ss_dssp             CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred             ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh
Confidence            99997 55 666 678889999999999988853

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.56  E-value=8.4e-15  Score=121.33  Aligned_cols=119  Identities=18%  Similarity=0.177  Sum_probs=105.5

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEeccccccc-ccCccccCCCCCcE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG-SIPTWIGVLSKLQT  139 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~  139 (183)
                      ..+++++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ..|..+..+++|++
T Consensus        48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  127 (549)
T 2z81_A           48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT  127 (549)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred             cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence            45789999999999998777889999999999999999997777779999999999999999985 35678999999999


Q ss_pred             EEcccCcccCCcc-ccccCCCCCcEEeccCCcccccCCccc
Q 030065          140 LRLYNNSFTGPIP-NSLLNLSKLEVFDAIYNVIDGTTTKMT  179 (183)
Q Consensus       140 L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~ip~~~  179 (183)
                      |++++|.+.+.+| ..+.++++|++|++++|.+++.+|..+
T Consensus       128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A          128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence            9999998655676 478899999999999999998877653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.56  E-value=2.6e-14  Score=111.60  Aligned_cols=121  Identities=20%  Similarity=0.235  Sum_probs=86.8

Q ss_pred             CCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEe
Q 030065           48 YPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRF  118 (183)
Q Consensus        48 ~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  118 (183)
                      .+.|.|..+.|...         .+.++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            45678888888631         257899999999999666667899999999999999999777888999999999999


Q ss_pred             cccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcc
Q 030065          119 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI  171 (183)
Q Consensus       119 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l  171 (183)
                      ++|+++ .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  157 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL  157 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC
Confidence            999887 5665433  4555566555555533333344444444444444444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.56  E-value=2e-14  Score=119.48  Aligned_cols=116  Identities=22%  Similarity=0.190  Sum_probs=86.3

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|++++..+..++.+++|++|+
T Consensus        51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  130 (570)
T 2z63_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (570)
T ss_dssp             CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred             CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence            46677788887777765566677777888888888877765566777788888888888877743334577788888888


Q ss_pred             cccCcccC-CccccccCCCCCcEEeccCCcccccCCc
Q 030065          142 LYNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       142 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      +++|.+++ .+|..+.++++|++|++++|.+++..|.
T Consensus       131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~  167 (570)
T 2z63_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (570)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred             cCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence            88888875 4677788888888888888888755443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.56  E-value=8.5e-15  Score=120.45  Aligned_cols=123  Identities=20%  Similarity=0.153  Sum_probs=90.6

Q ss_pred             CCceeeeecCCCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhc-CCCCCcEEEecccccccccCc
Q 030065           51 CSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELG-QLRRLRFIRFGFNKLSGSIPT  129 (183)
Q Consensus        51 c~w~gv~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~  129 (183)
                      |.+.++.|. ..++++.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |.
T Consensus       109 N~l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~  186 (487)
T 3oja_A          109 NNISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG  186 (487)
T ss_dssp             SCCCCEEEC-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC
T ss_pred             CcCCCCCcc-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc
Confidence            444555554 346788888888888877777778888888888888888877777765 678888888888888744 32


Q ss_pred             cccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065          130 WIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       130 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~  178 (183)
                       ...+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++ +|..
T Consensus       187 -~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~  232 (487)
T 3oja_A          187 -QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKA  232 (487)
T ss_dssp             -CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred             -cccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCcc-cchh
Confidence             335778888888888887 455567777888888888888875 4543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.56  E-value=1.2e-14  Score=118.77  Aligned_cols=112  Identities=17%  Similarity=0.119  Sum_probs=80.8

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++++|++++|.+++..|..|..+++|++|++++|.++...+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  134 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE  134 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence            46778888888888766677777788888888888887744444567777777777777777766666777777777777


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      +++|.+++..|..+..+++|+.|++++|++++
T Consensus       135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  166 (477)
T 2id5_A          135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS  166 (477)
T ss_dssp             ECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred             CCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence            77777775555566667777777777776663

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.56  E-value=4e-15  Score=115.57  Aligned_cols=113  Identities=17%  Similarity=0.136  Sum_probs=55.9

Q ss_pred             CcEEEEEccCCCCcccCCccCCCC-----CCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccc--cCccc--cC
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNL-----SFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS--IPTWI--GV  133 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p~~~--~~  133 (183)
                      +++++|++++|.+++. |..+..+     ++|++|++++|.+++..|..+..+++|++|++++|++.+.  +|..+  ..
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            3445555555555433 3333333     4555555555555544444555555555555555554433  12222  45


Q ss_pred             CCCCcEEEcccCcccC--Ccc-ccccCCCCCcEEeccCCcccccCC
Q 030065          134 LSKLQTLRLYNNSFTG--PIP-NSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       134 l~~L~~L~L~~n~l~~--~~p-~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      +++|++|++++|.+++  .++ ..+..+++|+.|++++|.+++.+|
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence            5555555555555551  111 112355666677777776666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.55  E-value=3.7e-14  Score=113.11  Aligned_cols=110  Identities=20%  Similarity=0.218  Sum_probs=71.6

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCcc-ccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTW-IGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~  141 (183)
                      +++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|.. +..+++|++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence            45666666666666544456666677777777777776555555666777777777777776 44433 46667777777


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      +++|.+++..|..+..+++|+.|++++|.+++
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            77777765445556667777777777776663

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.55  E-value=9e-15  Score=113.58  Aligned_cols=117  Identities=16%  Similarity=0.114  Sum_probs=88.4

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCC--Chhhh--cCCCCCcEEEeccccccc--ccC-ccccCCC
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGH--LPNEL--GQLRRLRFIRFGFNKLSG--SIP-TWIGVLS  135 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p~~~--~~l~~L~~L~l~~n~l~~--~~p-~~~~~l~  135 (183)
                      +++++|++++|.+++..+..+..+++|++|++++|.+.+.  .+..+  ..+++|++|++++|++++  .++ ..+..++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            6789999999999877668888899999999999987754  34444  678888888888888872  122 3345678


Q ss_pred             CCcEEEcccCcccCCcc-ccccCCCCCcEEeccCCcccccCCcccc
Q 030065          136 KLQTLRLYNNSFTGPIP-NSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       136 ~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      +|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..++
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~  273 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP  273 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence            88888888888886554 34556788888888888887 7777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.55  E-value=1e-14  Score=116.39  Aligned_cols=113  Identities=14%  Similarity=0.216  Sum_probs=99.4

Q ss_pred             CcEEEEEccCCCCcccCCcc-CCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLH-LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++.++++++.++ .+|.. +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            67899999999998 55654 67899999999999999976677899999999999999999977778899999999999


Q ss_pred             cccCcccCCcccc-ccCCCCCcEEeccCCcccccCCc
Q 030065          142 LYNNSFTGPIPNS-LLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       142 L~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      +++|.++ .+|.. +..+++|++|++++|.+++..|.
T Consensus       124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~  159 (390)
T 3o6n_A          124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD  159 (390)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChh
Confidence            9999999 67765 58899999999999999965443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=1.6e-14  Score=103.29  Aligned_cols=104  Identities=18%  Similarity=0.116  Sum_probs=49.8

Q ss_pred             cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCc--cccCCCCCcEEE
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPT--WIGVLSKLQTLR  141 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~  141 (183)
                      +++.|++++|.+++.  +.+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|.  .+..+++|++|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence            455555555555432  33445555555555555555222222244555555555555554 3333  444455555555


Q ss_pred             cccCcccCCcccc----ccCCCCCcEEeccCCcc
Q 030065          142 LYNNSFTGPIPNS----LLNLSKLEVFDAIYNVI  171 (183)
Q Consensus       142 L~~n~l~~~~p~~----~~~l~~L~~L~l~~N~l  171 (183)
                      +++|.++ .+|..    +..+++|+.|+++.|.+
T Consensus       120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            5555554 33432    44455555555555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=2e-14  Score=102.44  Aligned_cols=103  Identities=20%  Similarity=0.240  Sum_probs=88.1

Q ss_pred             CCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEe
Q 030065           48 YPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRF  118 (183)
Q Consensus        48 ~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  118 (183)
                      .+.|.|+.+.|...         ..++++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus         6 ~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A            6 QCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            35577888888642         257899999999999777888999999999999999999665556789999999999


Q ss_pred             cccccccccCccccCCCCCcEEEcccCcccCC
Q 030065          119 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGP  150 (183)
Q Consensus       119 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  150 (183)
                      ++|++++..+..+..+++|++|+|++|.++..
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            99999965556789999999999999999854

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=5.1e-15  Score=129.09  Aligned_cols=124  Identities=20%  Similarity=0.222  Sum_probs=102.1

Q ss_pred             CCceeeeec-CCCCcEEEEEccCCCCcc-----------------cCCccCC--CCCCCcEEEecCccCCCCChhhhcCC
Q 030065           51 CSWVGISCG-SRHQRVTALNLSDMGLGG-----------------TIPLHLG--NLSFLVSLDVAHNNFHGHLPNELGQL  110 (183)
Q Consensus        51 c~w~gv~c~-~~~~~l~~L~l~~~~l~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~p~~~~~l  110 (183)
                      +...|+... ...++++.|++++|.+++                 .+|..+.  .+++|++|++++|.+.+.+|..+..+
T Consensus       435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L  514 (876)
T 4ecn_A          435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL  514 (876)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred             CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence            445554321 245789999999999997                 3898887  99999999999999999999999999


Q ss_pred             CCCcEEEecccc-ccc-ccCccccCC-------CCCcEEEcccCcccCCccc--cccCCCCCcEEeccCCcccccCC
Q 030065          111 RRLRFIRFGFNK-LSG-SIPTWIGVL-------SKLQTLRLYNNSFTGPIPN--SLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       111 ~~L~~L~l~~n~-l~~-~~p~~~~~l-------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      ++|++|++++|+ ++| .+|..++.+       ++|++|++++|.++ .+|.  .+.++++|+.|++++|.++ .||
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            999999999998 887 777655544       48888888888888 7888  7888888888888888888 777

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=1.4e-14  Score=108.26  Aligned_cols=117  Identities=17%  Similarity=0.162  Sum_probs=85.7

Q ss_pred             CCcEEEEEccCCC-CcccCCccCCCCCCCcEEEecC-ccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCc-
Q 030065           62 HQRVTALNLSDMG-LGGTIPLHLGNLSFLVSLDVAH-NNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQ-  138 (183)
Q Consensus        62 ~~~l~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-  138 (183)
                      .+++++|++++|. ++...+..+..+++|++|++++ |.+++..+..+..+++|++|++++|++++ +|. +..+++|+ 
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~  131 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDI  131 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCS
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccc
Confidence            4678888888886 7744445677888888888887 88885555667788888888888888874 665 67777777 


Q ss_pred             --EEEcccC-cccCCccccccCCCCCc-EEeccCCcccccCCccccc
Q 030065          139 --TLRLYNN-SFTGPIPNSLLNLSKLE-VFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       139 --~L~L~~n-~l~~~~p~~~~~l~~L~-~L~l~~N~l~g~ip~~~~~  181 (183)
                        +|++++| .+++..+..+..+++|+ .|++++|+++ .+|...|.
T Consensus       132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~  177 (239)
T 2xwt_C          132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN  177 (239)
T ss_dssp             EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT
T ss_pred             ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcC
Confidence              8888888 77733333467777887 8888888777 66766654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.54  E-value=2.1e-14  Score=113.19  Aligned_cols=117  Identities=23%  Similarity=0.225  Sum_probs=98.9

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCc--cccCCCCCc
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPT--WIGVLSKLQ  138 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~  138 (183)
                      ..+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|.  .+..+++|+
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCC
T ss_pred             cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCc
Confidence            4578999999999999777778999999999999999999554455889999999999999998 5665  788899999


Q ss_pred             EEEcccCc-ccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065          139 TLRLYNNS-FTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       139 ~L~L~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~  178 (183)
                      +|++++|. +++..|..+..+++|+.|++++|.+++.+|..
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  193 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS  193 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence            99999994 66444567888999999999999998776654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.54  E-value=3.6e-14  Score=111.48  Aligned_cols=102  Identities=16%  Similarity=0.098  Sum_probs=86.8

Q ss_pred             EccCC-CCcccCCccCCCCCCCcEEEecC-ccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCc
Q 030065           69 NLSDM-GLGGTIPLHLGNLSFLVSLDVAH-NNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNS  146 (183)
Q Consensus        69 ~l~~~-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~  146 (183)
                      +++++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|+
T Consensus        14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            44455 677 6888 99999999999996 99997777889999999999999999998888889999999999999999


Q ss_pred             ccCCccccccCCCCCcEEeccCCcccc
Q 030065          147 FTGPIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       147 l~~~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      ++ .+|..+.....|+.|++++|.+..
T Consensus        92 l~-~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           92 LE-SLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CS-CCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             cc-eeCHHHcccCCceEEEeeCCCccC
Confidence            99 566554444449999999999873

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=8.2e-15  Score=101.86  Aligned_cols=106  Identities=22%  Similarity=0.250  Sum_probs=92.1

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccc-cCccccCCCCCcE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS-IPTWIGVLSKLQT  139 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~  139 (183)
                      ..+++++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++
T Consensus        40 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~  117 (149)
T 2je0_A           40 EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS  117 (149)
T ss_dssp             TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred             hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence            457899999999999954  7788999999999999999977888888899999999999999953 3478899999999


Q ss_pred             EEcccCcccCCcc---ccccCCCCCcEEeccC
Q 030065          140 LRLYNNSFTGPIP---NSLLNLSKLEVFDAIY  168 (183)
Q Consensus       140 L~L~~n~l~~~~p---~~~~~l~~L~~L~l~~  168 (183)
                      |++++|.+++..+   ..+..+++|+.|++++
T Consensus       118 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          118 LDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999995433   3688899999999864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.54  E-value=3.3e-14  Score=118.52  Aligned_cols=117  Identities=17%  Similarity=0.206  Sum_probs=76.9

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCC--CChhhhcCCCCCcEEEecccccccccCcc-ccCC---
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG--HLPNELGQLRRLRFIRFGFNKLSGSIPTW-IGVL---  134 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l---  134 (183)
                      ..+++++|++++|.+++..|..+..+++|++|++++|.+++  .+|..+..+++|++|++++|++++.+|.. +..+   
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            34567777777777776677777777777777777777774  22345666777777777777776534432 3333   


Q ss_pred             -------------------CCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCccc
Q 030065          135 -------------------SKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMT  179 (183)
Q Consensus       135 -------------------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~  179 (183)
                                         ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|...
T Consensus       431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~  492 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV  492 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTS
T ss_pred             CEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHH
Confidence                               45666666666666 56666667777777777777777 566543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.54  E-value=2.9e-14  Score=117.51  Aligned_cols=108  Identities=24%  Similarity=0.256  Sum_probs=97.8

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            67999999999999666678899999999999999999777889999999999999999999 67776  7999999999


Q ss_pred             ccCcccC-CccccccCCCCCcEEeccCCcccc
Q 030065          143 YNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       143 ~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      ++|.+++ .+|..++.+++|++|++++|.+++
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch
Confidence            9999986 578899999999999999999985

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.53  E-value=2.4e-14  Score=119.31  Aligned_cols=108  Identities=23%  Similarity=0.245  Sum_probs=90.6

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            57889999999988666678888899999999999998777888888999999999999988 67766  7888999999


Q ss_pred             ccCcccC-CccccccCCCCCcEEeccCCcccc
Q 030065          143 YNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       143 ~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      ++|.+++ .+|..+.++++|++|++++|.+++
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            9998885 345778888888888888888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.53  E-value=4e-14  Score=118.66  Aligned_cols=110  Identities=24%  Similarity=0.228  Sum_probs=52.9

Q ss_pred             cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCC---ChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGH---LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ++++|++++|.+.+..|..+..+++|++|++++|.+++.   .+..+..+++|++|++++|++++..|..+..+++|++|
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  505 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV  505 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence            344444444444433344444444444444444444431   11234444555555555555554444445555555555


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~  174 (183)
                      ++++|++++..|..+.++++| .|++++|++++.
T Consensus       506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~  538 (606)
T 3t6q_A          506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISII  538 (606)
T ss_dssp             ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred             ECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence            555555554444455555555 555555555533

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.52  E-value=2.6e-14  Score=121.39  Aligned_cols=114  Identities=17%  Similarity=0.140  Sum_probs=75.1

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  128 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL  128 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence            56677777777776655666666777777777777776333335666777777777777776444456667777777777


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      ++|.+++..|..+.++++|++|++++|.+++..|
T Consensus       129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A          129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred             CCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence            7777765555566666677777777766665443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.52  E-value=3.9e-14  Score=123.35  Aligned_cols=118  Identities=23%  Similarity=0.126  Sum_probs=88.2

Q ss_pred             CCCcEEEEEccCCCCcccC-CccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCcc--ccCCCCC
Q 030065           61 RHQRVTALNLSDMGLGGTI-PLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTW--IGVLSKL  137 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~l~~L  137 (183)
                      ...++++|++++|...+.+ |..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.+|..  +..+++|
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence            3467888888888655555 566778888888888888888777778888888888888888887655554  7778888


Q ss_pred             cEEEcccCcccCCcc-ccccCCCCCcEEeccCCcccccCCcc
Q 030065          138 QTLRLYNNSFTGPIP-NSLLNLSKLEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       138 ~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~ip~~  178 (183)
                      ++|+|++|.+++..+ ..+.++++|+.|++++|.+++..|..
T Consensus       126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~  167 (844)
T 3j0a_A          126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE  167 (844)
T ss_dssp             CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred             CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence            888888888875443 45778888888888888887665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=1e-14  Score=104.23  Aligned_cols=109  Identities=22%  Similarity=0.254  Sum_probs=93.1

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCC-CCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLS-FLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++.|++++|.++ .++. +..+. +|++|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            67899999999999 5554 55554 999999999999954  6788999999999999999954334458999999999


Q ss_pred             cccCcccCCccc--cccCCCCCcEEeccCCcccccCCc
Q 030065          142 LYNNSFTGPIPN--SLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       142 L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      +++|.++ .+|.  .+..+++|+.|++++|.++ .+|.
T Consensus        95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~  130 (176)
T 1a9n_A           95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKH  130 (176)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred             CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHh
Confidence            9999997 7787  7889999999999999998 4554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.51  E-value=1.1e-14  Score=112.98  Aligned_cols=116  Identities=14%  Similarity=0.107  Sum_probs=68.5

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCC--Ch--hhhcCCCCCcEEEecccccccccCc----cccC
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGH--LP--NELGQLRRLRFIRFGFNKLSGSIPT----WIGV  133 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p--~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~  133 (183)
                      .+++++|++++|.+.+..+..+..+++|++|++++|.+.+.  ++  ..+..+++|++|++++|+++ .++.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            35778888888888766666777788888888888876532  11  11234556666666666654 2222    1344


Q ss_pred             CCCCcEEEcccCcccCCccccccCC---CCCcEEeccCCcccccCCccc
Q 030065          134 LSKLQTLRLYNNSFTGPIPNSLLNL---SKLEVFDAIYNVIDGTTTKMT  179 (183)
Q Consensus       134 l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~l~~N~l~g~ip~~~  179 (183)
                      +++|++|+|++|.+++..|..+..+   ++|++|++++|+++ .+|..+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~  270 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL  270 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence            5566666666666654445544444   45666666666665 445443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.50  E-value=1.2e-13  Score=111.88  Aligned_cols=115  Identities=23%  Similarity=0.213  Sum_probs=76.5

Q ss_pred             CcEEEEEccCCCCcccCCcc-------------------------CCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLH-------------------------LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR  117 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~-------------------------l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  117 (183)
                      +++++|++++|.++...+..                         +..+++|++|++++|.++ .+| .+..+++|+.|+
T Consensus       136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~  213 (440)
T 3zyj_A          136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD  213 (440)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEE
T ss_pred             ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEE
Confidence            56777777777766433323                         344555555555556555 344 355666777777


Q ss_pred             ecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       118 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      +++|++++..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|...|
T Consensus       214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~  275 (440)
T 3zyj_A          214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLF  275 (440)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTT
T ss_pred             CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHh
Confidence            7777777666677777777888888888777655666777888888888888887 4454444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.50  E-value=2.2e-14  Score=112.14  Aligned_cols=84  Identities=25%  Similarity=0.301  Sum_probs=52.9

Q ss_pred             CCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEecc
Q 030065           88 FLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAI  167 (183)
Q Consensus        88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~  167 (183)
                      +|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|+++
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence            4555555555555444455666666666666666666544455666666666666666666 566666666666666666


Q ss_pred             CCccc
Q 030065          168 YNVID  172 (183)
Q Consensus       168 ~N~l~  172 (183)
                      +|+++
T Consensus       273 ~N~l~  277 (332)
T 2ft3_A          273 TNNIT  277 (332)
T ss_dssp             SSCCC
T ss_pred             CCCCC
Confidence            66666

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.48  E-value=2e-13  Score=110.99  Aligned_cols=116  Identities=19%  Similarity=0.177  Sum_probs=80.2

Q ss_pred             CCcEEEEEccCCCCcccCCcc-------------------------CCCCCCCcEEEecCccCCCCChhhhcCCCCCcEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLH-------------------------LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFI  116 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~-------------------------l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  116 (183)
                      .+++++|++++|.++...+..                         +..+++|++|++++|.++ .+| .+..+++|+.|
T Consensus       146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L  223 (452)
T 3zyi_A          146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEEL  223 (452)
T ss_dssp             CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEE
T ss_pred             cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEE
Confidence            357788888888776433323                         344556666666666666 333 35667777777


Q ss_pred             EecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       117 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      ++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+++ .+|...|
T Consensus       224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~  286 (452)
T 3zyi_A          224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLF  286 (452)
T ss_dssp             ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSS
T ss_pred             ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHh
Confidence            77777777666777788888888888888887666667778888888888888887 4454444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.48  E-value=1.4e-13  Score=107.02  Aligned_cols=107  Identities=19%  Similarity=0.147  Sum_probs=59.3

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhc-CCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELG-QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      +++++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++ ++. ...+++|++|+
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~  197 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLD  197 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEE
Confidence            4456666666666644444555566666666666666654444442 45566666666666552 222 22355555555


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      +++|.++ .+|..+..+++|+.|++++|.++
T Consensus       198 Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             CCSSCCC-EECGGGGGGTTCSEEECTTSCCC
T ss_pred             CCCCcCC-cchhhhcccCcccEEECcCCccc
Confidence            5555555 34444555555555555555555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.47  E-value=7.1e-14  Score=117.44  Aligned_cols=141  Identities=11%  Similarity=0.115  Sum_probs=109.9

Q ss_pred             CCCCCCCCCCCCCCCCC----ceeeeecC----------------CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEec
Q 030065           36 YRSDLTNNWSISYPICS----WVGISCGS----------------RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVA   95 (183)
Q Consensus        36 ~~~~~~~~w~~~~~~c~----w~gv~c~~----------------~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~   95 (183)
                      +.+..+.+|.+...||.    |.++.|..                ...+++.++++++.+....+..+..+++|++|+++
T Consensus         4 ~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~   83 (597)
T 3oja_B            4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN   83 (597)
T ss_dssp             -------CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECT
T ss_pred             cccccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC
Confidence            34445677877665553    65544431                12567899999999984444446779999999999


Q ss_pred             CccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCcccc-ccCCCCCcEEeccCCccccc
Q 030065           96 HNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNS-LLNLSKLEVFDAIYNVIDGT  174 (183)
Q Consensus        96 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~g~  174 (183)
                      +|.+++..|..+..+++|++|++++|.+++..|..|+.+++|++|+|++|.++ .+|.. +..+++|++|++++|.+++.
T Consensus        84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~  162 (597)
T 3oja_B           84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI  162 (597)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCC
Confidence            99999777779999999999999999999877778899999999999999999 56655 58999999999999999976


Q ss_pred             CCc
Q 030065          175 TTK  177 (183)
Q Consensus       175 ip~  177 (183)
                      +|.
T Consensus       163 ~~~  165 (597)
T 3oja_B          163 EDD  165 (597)
T ss_dssp             CTT
T ss_pred             Chh
Confidence            664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=9.3e-14  Score=119.34  Aligned_cols=157  Identities=17%  Similarity=0.163  Sum_probs=100.4

Q ss_pred             CChHHHHHHHHHHHhcccCCCCCCCCCCCC-CCCCCceeeeecCC----------------CCcEEEEEccCCCCcc---
Q 030065           18 NLTTDQSALLAFKARVVDYRSDLTNNWSIS-YPICSWVGISCGSR----------------HQRVTALNLSDMGLGG---   77 (183)
Q Consensus        18 ~~~~~~~~l~~~k~~~~~~~~~~~~~w~~~-~~~c~w~gv~c~~~----------------~~~l~~L~l~~~~l~~---   77 (183)
                      -...+.+++++++..+.+..+.....|... ...+.|.+..+...                ...++.++++.+.+.+   
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~  208 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDD  208 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecCCccceEEeeCCCCCcchhhHhhcCccCcccccCccc
Confidence            345666888888877766666666667433 45567877655420                0122333344443332   


Q ss_pred             ------cCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCc
Q 030065           78 ------TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPI  151 (183)
Q Consensus        78 ------~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  151 (183)
                            ..+..+..+..|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+
T Consensus       209 ~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l  285 (727)
T 4b8c_D          209 IENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL  285 (727)
T ss_dssp             -------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred             cccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence                  33566788899999999999999 88888889999999999999999 89999999999999999999999 89


Q ss_pred             cccccCCCCCcEEeccCCcccccCCcc
Q 030065          152 PNSLLNLSKLEVFDAIYNVIDGTTTKM  178 (183)
Q Consensus       152 p~~~~~l~~L~~L~l~~N~l~g~ip~~  178 (183)
                      |..++.+++|++|+|++|.|+ .||..
T Consensus       286 p~~~~~l~~L~~L~L~~N~l~-~lp~~  311 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMVT-TLPWE  311 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred             ChhhcCCCCCCEEECCCCCCC-ccChh
Confidence            999999999999999999998 78876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.46  E-value=7e-14  Score=108.78  Aligned_cols=112  Identities=21%  Similarity=0.169  Sum_probs=96.5

Q ss_pred             CCcEEEEEccCCCCcccCCccCC-CCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLG-NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      .+++++|++++|.+++..+..+. .+++|++|++++|.+++ ++. ...+++|++|++++|+++ .+|..+..+++|+.|
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L  219 (317)
T 3o53_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI  219 (317)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEE
T ss_pred             cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcCC-cchhhhcccCcccEE
Confidence            36899999999999977666664 68999999999999994 443 345899999999999999 566668999999999


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCccc-ccCCc
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID-GTTTK  177 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~-g~ip~  177 (183)
                      ++++|.++ .+|..+..+++|+.|++++|.++ +.+|.
T Consensus       220 ~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             ECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred             ECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence            99999999 78988999999999999999998 54443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.45  E-value=5.2e-13  Score=103.55  Aligned_cols=103  Identities=26%  Similarity=0.387  Sum_probs=48.9

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|+.|+
T Consensus        84 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~  157 (308)
T 1h6u_A           84 LTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLS  157 (308)
T ss_dssp             CCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEE
T ss_pred             CCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEE
Confidence            3556666666666553 22 35555555555555555552 232 4455555555555555542 222 44444444444


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      +++|.++ .++. +..+++|+.|++++|.++
T Consensus       158 l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          158 IGNAQVS-DLTP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CCSSCCC-CCGG-GTTCTTCCEEECCSSCCC
T ss_pred             ccCCcCC-CChh-hcCCCCCCEEECCCCccC
Confidence            4444444 2222 334444444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.45  E-value=1.1e-13  Score=115.89  Aligned_cols=113  Identities=23%  Similarity=0.347  Sum_probs=65.0

Q ss_pred             CCCCCCCCC-----Cceee-eecCCCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEE
Q 030065           43 NWSISYPIC-----SWVGI-SCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFI  116 (183)
Q Consensus        43 ~w~~~~~~c-----~w~gv-~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  116 (183)
                      +|.....+|     .|.|+ .|..  .+++.|++++|++++ +|..+.  ++|++|++++|.++ .+|   ..+++|++|
T Consensus        35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L  105 (571)
T 3cvr_A           35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYL  105 (571)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred             HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence            354445566     68888 6753  467777777777774 665543  56777777777666 555   345666666


Q ss_pred             EecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       117 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      ++++|++++ +|. +..  +|++|++++|.+++ +|.   .+++|+.|++++|.++
T Consensus       106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A          106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT  153 (571)
T ss_dssp             ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence            666666663 554 332  55555555555553 443   3344444444444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.45  E-value=1.3e-13  Score=106.88  Aligned_cols=116  Identities=16%  Similarity=0.116  Sum_probs=71.3

Q ss_pred             cEEEEEccCCCCcccCCccC--CCCCCCcEEEecCccCCCCCh----hhhcCCCCCcEEEecccccccccCccccCCCCC
Q 030065           64 RVTALNLSDMGLGGTIPLHL--GNLSFLVSLDVAHNNFHGHLP----NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKL  137 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  137 (183)
                      ++++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++++..+..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            47777777777777766666  666677777777777665433    233456666666666666665555566666666


Q ss_pred             cEEEcccCcccC---------------------------Ccccc----ccCCCCCcEEeccCCcccccCCccc
Q 030065          138 QTLRLYNNSFTG---------------------------PIPNS----LLNLSKLEVFDAIYNVIDGTTTKMT  179 (183)
Q Consensus       138 ~~L~L~~n~l~~---------------------------~~p~~----~~~l~~L~~L~l~~N~l~g~ip~~~  179 (183)
                      ++|+|++|++.+                           .+|..    +..+++|++|++++|.+++.+|+.+
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA  244 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence            666666665432                           11211    2345677777777777776655443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.45  E-value=6.8e-13  Score=102.89  Aligned_cols=102  Identities=21%  Similarity=0.336  Sum_probs=51.0

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.++ .+++ +..+++|++|++++|.+++ ++ .+..+++|++|++++|++++ ++. +..+++|++|++
T Consensus        63 ~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l  136 (308)
T 1h6u_A           63 NNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL  136 (308)
T ss_dssp             TTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence            44555555555555 2333 4555555555555555552 22 34555555555555555552 222 455555555555


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      ++|.+++ ++. +..+++|+.|++++|.++
T Consensus       137 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          137 DLNQITN-ISP-LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             CSSCCCC-CGG-GGGCTTCCEEECCSSCCC
T ss_pred             CCCccCc-Ccc-ccCCCCccEEEccCCcCC
Confidence            5555552 222 445555555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=4.2e-13  Score=95.90  Aligned_cols=87  Identities=20%  Similarity=0.177  Sum_probs=76.7

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      .+++.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            57899999999999777888999999999999999999554445789999999999999999544455899999999999


Q ss_pred             ccCcccC
Q 030065          143 YNNSFTG  149 (183)
Q Consensus       143 ~~n~l~~  149 (183)
                      ++|.+..
T Consensus       113 ~~N~~~c  119 (174)
T 2r9u_A          113 YNNPWDC  119 (174)
T ss_dssp             CSSCBCT
T ss_pred             CCCCccc
Confidence            9999984

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.44  E-value=9.7e-14  Score=114.14  Aligned_cols=112  Identities=21%  Similarity=0.150  Sum_probs=98.0

Q ss_pred             CCcEEEEEccCCCCcccCCccCC-CCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLG-NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      .++++.|++++|.+++..|..+. .+++|++|++++|.+++. |. ...+++|++|++++|.+++ +|..+..+++|+.|
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L  219 (487)
T 3oja_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI  219 (487)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred             CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence            47899999999999988888776 789999999999999954 43 4469999999999999995 56668899999999


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCccc-ccCCc
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID-GTTTK  177 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~-g~ip~  177 (183)
                      ++++|.++ .+|..+..+++|+.|++++|.+. +.+|.
T Consensus       220 ~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             ECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             EecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHH
Confidence            99999999 58988999999999999999998 55443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.43  E-value=6.5e-13  Score=102.25  Aligned_cols=102  Identities=31%  Similarity=0.391  Sum_probs=49.9

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.+++ ++ .+..+++|++|++++|.+++ + +.+..+++|++|++++|++++ + ..+..+++|++|++
T Consensus        90 ~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L  163 (291)
T 1h6t_A           90 KNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSL  163 (291)
T ss_dssp             TTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             CCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEc
Confidence            334444444444442 22 14444444445555444442 2 234445555555555555542 2 34455555556666


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      ++|.+++ ++. +..+++|+.|++++|.++
T Consensus       164 ~~N~l~~-~~~-l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          164 EDNQISD-IVP-LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             CSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred             cCCcccc-chh-hcCCCccCEEECCCCcCC
Confidence            6555553 222 555666666666666655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.42  E-value=8.8e-13  Score=100.15  Aligned_cols=104  Identities=29%  Similarity=0.280  Sum_probs=84.1

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++++|++++|.+++ +++ +..+++|++|++++|.+++ +|.. .. ++|++|++++|++++ ++ .+..+++|+.|+
T Consensus        62 l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~  134 (263)
T 1xeu_A           62 FTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS  134 (263)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence            4678899999998884 444 8888899999999999884 5543 33 889999999999884 44 588899999999


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~  174 (183)
                      +++|+++ .++ .+..+++|+.|++++|.+++.
T Consensus       135 Ls~N~i~-~~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          135 IRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CTTSCCC-BCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCCcCC-CCh-HHccCCCCCEEECCCCcCcch
Confidence            9999998 455 678899999999999999865

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.42  E-value=1.3e-12  Score=100.66  Aligned_cols=107  Identities=31%  Similarity=0.329  Sum_probs=73.3

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++++|++++|.+++ +++ +..+++|++|++++|.+++ ++ .+..+++|++|++++|++++ + ..+..+++|+.|+
T Consensus        67 l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~  140 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLY  140 (291)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEE
T ss_pred             CCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEE
Confidence            3567777777777774 333 6777777777777777763 33 36777777777777777763 3 3466777777777


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      +++|.+++ + ..+..+++|+.|++++|.+++..|
T Consensus       141 l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          141 LGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             CCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             ccCCcCCc-c-hhhccCCCCCEEEccCCccccchh
Confidence            77777773 3 456677777777777777775433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.42  E-value=8.6e-13  Score=100.22  Aligned_cols=105  Identities=24%  Similarity=0.288  Sum_probs=82.8

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ..++++.|++++|.+++ ++. +.. ++|++|++++|.+++ ++ .+..+++|++|++++|++++ ++ .+..+++|+.|
T Consensus        83 ~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L  155 (263)
T 1xeu_A           83 DLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVL  155 (263)
T ss_dssp             TCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEE
T ss_pred             cCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEE
Confidence            44678889999998884 554 233 788999999998884 44 58888899999999998884 44 57788889999


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~  174 (183)
                      ++++|.+++.  ..+..+++|+.|++++|.+++.
T Consensus       156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            9999988854  5678888899999999988754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.42  E-value=6.2e-13  Score=104.17  Aligned_cols=109  Identities=25%  Similarity=0.354  Sum_probs=85.6

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|++|++++|++++ + +.+..+++|+.|+
T Consensus       220 ~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~  293 (347)
T 4fmz_A          220 MTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLF  293 (347)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE
T ss_pred             CCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEE
Confidence            3678888888888873 444 7778888888888888874 3 457788888888888888874 3 3577788888888


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      +++|.+++..|..+..+++|+.|++++|++++..|
T Consensus       294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             CcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            88888887777778888888899999988887665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.41  E-value=6.5e-13  Score=104.07  Aligned_cols=106  Identities=28%  Similarity=0.323  Sum_probs=91.8

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ..+++++|++++|.+++ + +.+..+++|++|++++|.+++ + +.+..+++|+.|++++|.+++..|..+..+++|++|
T Consensus       241 ~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             TCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             cCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence            45789999999999984 4 458889999999999999994 4 458889999999999999998888889999999999


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      ++++|.+++..|  +..+++|+.|++++|.++
T Consensus       317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          317 FLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999995544  888999999999999986

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=6.5e-13  Score=111.17  Aligned_cols=102  Identities=24%  Similarity=0.215  Sum_probs=90.4

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEeccccccccc-CccccCCCCCcE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI-PTWIGVLSKLQT  139 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~  139 (183)
                      ...+++.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|++|++++|++++.. |..+..+++|+.
T Consensus       461 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~  537 (567)
T 1dce_A          461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL  537 (567)
T ss_dssp             GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence            3478999999999999 899999999999999999999995 77 8999999999999999999766 999999999999


Q ss_pred             EEcccCcccCCccccc----cCCCCCcEEec
Q 030065          140 LRLYNNSFTGPIPNSL----LNLSKLEVFDA  166 (183)
Q Consensus       140 L~L~~n~l~~~~p~~~----~~l~~L~~L~l  166 (183)
                      |+|++|.+++. |+..    ..+++|+.|++
T Consensus       538 L~L~~N~l~~~-~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          538 LNLQGNSLCQE-EGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EECTTSGGGGS-SSCTTHHHHHCTTCSEEEC
T ss_pred             EEecCCcCCCC-ccHHHHHHHHCcccCccCC
Confidence            99999999954 4333    34889999874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=2.8e-15  Score=109.21  Aligned_cols=110  Identities=22%  Similarity=0.217  Sum_probs=96.3

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|++|+
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            4689999999999985 77 7888999999999999999 788888788999999999999984 55 578889999999


Q ss_pred             cccCcccCCccc--cccCCCCCcEEeccCCcccccCCc
Q 030065          142 LYNNSFTGPIPN--SLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       142 L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      +++|.++ .++.  .+..+++|++|++++|.+++.+|.
T Consensus       122 l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             ESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCCCcCC-chhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            9999998 4443  688999999999999999877664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.38  E-value=1.2e-12  Score=103.14  Aligned_cols=100  Identities=18%  Similarity=0.135  Sum_probs=79.8

Q ss_pred             CCCCceeeeecCC---------CCcEEEEEccCCCCcccCC-ccCCCCCCCcEEEecCccCCCCChh-hhcCCCCCcE-E
Q 030065           49 PICSWVGISCGSR---------HQRVTALNLSDMGLGGTIP-LHLGNLSFLVSLDVAHNNFHGHLPN-ELGQLRRLRF-I  116 (183)
Q Consensus        49 ~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~-L  116 (183)
                      +.|.+..|.|...         ..++++|++++|.++ .+| ..|.++++|++|++++|.+.+.+|. .|..+++++. +
T Consensus         7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X            7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred             cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence            4578888889642         147899999999999 555 4688999999999999998766664 4677888775 5


Q ss_pred             EecccccccccCccccCCCCCcEEEcccCcccC
Q 030065          117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG  149 (183)
Q Consensus       117 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  149 (183)
                      .+..|+++...|..|..+++|++|++++|++++
T Consensus        86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~  118 (350)
T 4ay9_X           86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  118 (350)
T ss_dssp             EEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred             cccCCcccccCchhhhhcccccccccccccccc
Confidence            566788986667788999999999999998873

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.38  E-value=1.6e-12  Score=102.08  Aligned_cols=99  Identities=22%  Similarity=0.220  Sum_probs=84.0

Q ss_pred             CCCceeeeecCC-----------CCcEEEEEccC-CCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEE
Q 030065           50 ICSWVGISCGSR-----------HQRVTALNLSD-MGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR  117 (183)
Q Consensus        50 ~c~w~gv~c~~~-----------~~~l~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  117 (183)
                      .|.|..+.|...           ..+++.|++++ |.+++..+..|..+++|++|+|++|.+++..|..|..+++|+.|+
T Consensus         7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A            7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence            588888888754           24599999996 999977667899999999999999999988888899999999999


Q ss_pred             ecccccccccCccccCCCCCcEEEcccCcccC
Q 030065          118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG  149 (183)
Q Consensus       118 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  149 (183)
                      |++|++++..+..+..++ |+.|+|.+|.+..
T Consensus        87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            999999954444555555 9999999999873

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.37  E-value=3.1e-12  Score=107.81  Aligned_cols=102  Identities=30%  Similarity=0.398  Sum_probs=47.2

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      ++|+.|++++|.+++ ++ .+..+++|+.|++++|.+++ + +.+..+++|+.|++++|++++.  ..+..+++|+.|+|
T Consensus        87 ~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L  160 (605)
T 1m9s_A           87 KNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL  160 (605)
T ss_dssp             TTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEEC
T ss_pred             CCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEEC
Confidence            344555555554442 22 34445555555555555542 2 2344445555555555555422  33444455555555


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      ++|.+++..|  +..+++|+.|+|++|.++
T Consensus       161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          161 EDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             CSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             cCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            5555543222  444444444444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.37  E-value=6.7e-13  Score=111.05  Aligned_cols=39  Identities=21%  Similarity=0.201  Sum_probs=23.7

Q ss_pred             cEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065          138 QTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       138 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      +.|+|++|.++ .+|..+..+++|+.|++++|.+++.+|.
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            55566666655 4565555566666666666666655554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.37  E-value=3e-12  Score=104.45  Aligned_cols=40  Identities=18%  Similarity=0.242  Sum_probs=18.3

Q ss_pred             ccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          131 IGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       131 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      +..+++|+.|++++|.+++..|  +..+++|+.|++++|.++
T Consensus       349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            3444444444444444443332  444444555555555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.36  E-value=4e-12  Score=107.10  Aligned_cols=106  Identities=25%  Similarity=0.360  Sum_probs=93.4

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ..++|+.|++++|.+++ + +.+..+++|+.|++++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|
T Consensus       107 ~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L  180 (605)
T 1m9s_A          107 DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL  180 (605)
T ss_dssp             TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence            45789999999999984 4 4588999999999999999954  678899999999999999996555  8899999999


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~  174 (183)
                      +|++|.+++ +| .+..+++|+.|++++|++++.
T Consensus       181 ~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          181 YLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             ECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             ECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence            999999994 54 688999999999999999864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.34  E-value=4.3e-12  Score=103.50  Aligned_cols=108  Identities=29%  Similarity=0.439  Sum_probs=94.5

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ..++++.|++++|.+++ +++ +..+++|+.|++++|.+++. +. +..+++|+.|++++|++++..|  +..+++|+.|
T Consensus       263 ~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  336 (466)
T 1o6v_A          263 GLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL  336 (466)
T ss_dssp             TCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred             cCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence            45789999999999995 444 88899999999999999954 43 7899999999999999996654  7789999999


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      ++++|.+++.  ..+..+++|+.|++++|++++.+|
T Consensus       337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence            9999999953  468899999999999999998877

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.32  E-value=6.9e-12  Score=102.35  Aligned_cols=101  Identities=20%  Similarity=0.217  Sum_probs=61.1

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.+++ +|  +..+++|++|++++|.+++ ++  +..+++|++|++++|++++ +|  +..+++|++|++
T Consensus        64 ~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence            556666666666663 33  5566666666666666664 22  5566666666666666663 33  556666666666


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccC
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTT  175 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i  175 (183)
                      ++|.+++ ++  +..+++|+.|++++|...+.+
T Consensus       135 ~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~  164 (457)
T 3bz5_A          135 ARNTLTE-ID--VSHNTQLTELDCHLNKKITKL  164 (457)
T ss_dssp             TTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC
T ss_pred             CCCccce-ec--cccCCcCCEEECCCCCccccc
Confidence            6666663 32  556666666666666544444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.29  E-value=5e-13  Score=106.45  Aligned_cols=114  Identities=19%  Similarity=0.161  Sum_probs=81.4

Q ss_pred             CcEEEEEccCCCCcc-----cCCccCCCCCCCcEEEecCccCC----CCChhhhcCCCCCcEEEecccccccc----cCc
Q 030065           63 QRVTALNLSDMGLGG-----TIPLHLGNLSFLVSLDVAHNNFH----GHLPNELGQLRRLRFIRFGFNKLSGS----IPT  129 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~l~~n~l~~~----~p~  129 (183)
                      +++++|++++|.++.     ..+..+..+++|++|++++|.++    +.+|..+..+++|++|++++|.+++.    ++.
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  266 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  266 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence            467777777777762     23335667778888888888875    45677777788888888888887754    455


Q ss_pred             ccc--CCCCCcEEEcccCcccC----Cccccc-cCCCCCcEEeccCCcccccCC
Q 030065          130 WIG--VLSKLQTLRLYNNSFTG----PIPNSL-LNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       130 ~~~--~l~~L~~L~L~~n~l~~----~~p~~~-~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      .+.  .+++|++|+|++|.+++    .+|..+ .++++|+.|++++|.+++..|
T Consensus       267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            553  37788888888888875    367666 557888888888888876553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.29  E-value=1.2e-14  Score=105.90  Aligned_cols=104  Identities=25%  Similarity=0.346  Sum_probs=87.3

Q ss_pred             EEEEEccCCCCcccCCc------cCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCc
Q 030065           65 VTALNLSDMGLGGTIPL------HLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQ  138 (183)
Q Consensus        65 l~~L~l~~~~l~~~~~~------~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~  138 (183)
                      ++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+
T Consensus        20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~   96 (198)
T 1ds9_A           20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE   96 (198)
T ss_dssp             CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred             ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence            44444444455544444      78889999999999999995 77 8889999999999999999 7888887889999


Q ss_pred             EEEcccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065          139 TLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       139 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      +|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus        97 ~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A           97 ELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             EEEEEEEECC-CHH-HHHHHHHSSEEEESEEECCC
T ss_pred             EEECcCCcCC-cCC-ccccCCCCCEEECCCCcCCc
Confidence            9999999999 466 68889999999999999984

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.28  E-value=8.5e-12  Score=105.40  Aligned_cols=82  Identities=30%  Similarity=0.360  Sum_probs=64.2

Q ss_pred             CCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEec
Q 030065           87 SFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDA  166 (183)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l  166 (183)
                      ++|+.|++++|.++ .+|   ..+++|+.|++++|+++ .+|.   .+++|+.|+|++|+++ .+|..+.++++|+.|++
T Consensus       221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            55677777777776 345   34577888888888887 5665   5678899999999998 78888889999999999


Q ss_pred             cCCcccccCCc
Q 030065          167 IYNVIDGTTTK  177 (183)
Q Consensus       167 ~~N~l~g~ip~  177 (183)
                      ++|.+++.+|.
T Consensus       292 ~~N~l~~~~~~  302 (622)
T 3g06_A          292 EGNPLSERTLQ  302 (622)
T ss_dssp             CSCCCCHHHHH
T ss_pred             cCCCCCCcCHH
Confidence            99999877665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.28  E-value=1.5e-11  Score=96.91  Aligned_cols=110  Identities=15%  Similarity=0.121  Sum_probs=90.0

Q ss_pred             EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCCh-hhhcCCCCCcEEEecccccccccC-ccccCCCCCcE-EEc
Q 030065           66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLP-NELGQLRRLRFIRFGFNKLSGSIP-TWIGVLSKLQT-LRL  142 (183)
Q Consensus        66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-L~L  142 (183)
                      ++++.++++++ .+|..+.  +++++|++++|+|+ .+| ..|..+++|++|++++|++.+.+| ..|.++++++. +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            46889999999 8888764  58999999999999 555 468999999999999999876666 46788888775 667


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF  180 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~  180 (183)
                      ..|+++...|..+..+++|++|++++|.+++ +|...|
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~  124 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHK  124 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTT
T ss_pred             cCCcccccCchhhhhcccccccccccccccc-CCchhh
Confidence            7899995556778999999999999999984 454443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.27  E-value=2.6e-12  Score=108.53  Aligned_cols=120  Identities=24%  Similarity=0.346  Sum_probs=58.0

Q ss_pred             CCCCCCCCCCCceeeeec------CCCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcE
Q 030065           42 NNWSISYPICSWVGISCG------SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRF  115 (183)
Q Consensus        42 ~~w~~~~~~c~w~gv~c~------~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  115 (183)
                      ..|....++|.|.|..|.      ....+++.|++++++++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++
T Consensus        13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~   85 (622)
T 3g06_A           13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRT   85 (622)
T ss_dssp             HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCE
T ss_pred             HHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCE
Confidence            345555566666543211      01123455555555555 4444433  34555555555554 3333   2344455


Q ss_pred             EEecccccccccCccc-----------------cCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065          116 IRFGFNKLSGSIPTWI-----------------GVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       116 L~l~~n~l~~~~p~~~-----------------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      |++++|+++ .+|..+                 ..+++|+.|++++|+++ .+|..   +++|++|++++|++++
T Consensus        86 L~Ls~N~l~-~lp~~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~  155 (622)
T 3g06_A           86 LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS  155 (622)
T ss_dssp             EEECSCCCS-CCCCCCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC
T ss_pred             EEcCCCcCC-cCCCCCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC
Confidence            555554444 333300                 02345555555555555 34432   3667777777777764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.27  E-value=2.4e-11  Score=99.17  Aligned_cols=100  Identities=20%  Similarity=0.234  Sum_probs=55.9

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.+++ ++  +..+++|++|++++|.+++ +|  +..+++|++|++++|++++ ++  +..+++|++|++
T Consensus        85 ~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l  155 (457)
T 3bz5_A           85 TNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDC  155 (457)
T ss_dssp             TTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEEC
Confidence            455666666666553 22  5555666666666666653 33  5555666666666666653 22  455566666666


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      ++|...+.+  .+..+++|+.|++++|++++
T Consensus       156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             TTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred             CCCCccccc--ccccCCcCCEEECCCCccce
Confidence            666444344  24555666666666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.27  E-value=1.3e-12  Score=101.92  Aligned_cols=109  Identities=17%  Similarity=0.135  Sum_probs=54.2

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCC-ChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGH-LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++.++++++.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            3445555555555533222 34455555555555555433 444455555555555555555544444455555555555


Q ss_pred             cccC-cccC-CccccccCCCCCcEEeccCC-ccc
Q 030065          142 LYNN-SFTG-PIPNSLLNLSKLEVFDAIYN-VID  172 (183)
Q Consensus       142 L~~n-~l~~-~~p~~~~~l~~L~~L~l~~N-~l~  172 (183)
                      +++| .+++ .++..+..+++|+.|++++| .++
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence            5555 3443 13333444555555555555 444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.27  E-value=4.3e-13  Score=104.55  Aligned_cols=108  Identities=19%  Similarity=0.253  Sum_probs=45.3

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCc-cCCCC-ChhhhcCCCCCcEEEeccc-ccccc-cCccccCCC-CC
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHN-NFHGH-LPNELGQLRRLRFIRFGFN-KLSGS-IPTWIGVLS-KL  137 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~-~L  137 (183)
                      +++++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|
T Consensus       118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            34444444444444444444444444444444444 33321 2333334444444444444 44322 233333344 44


Q ss_pred             cEEEcccC--ccc-CCccccccCCCCCcEEeccCCc
Q 030065          138 QTLRLYNN--SFT-GPIPNSLLNLSKLEVFDAIYNV  170 (183)
Q Consensus       138 ~~L~L~~n--~l~-~~~p~~~~~l~~L~~L~l~~N~  170 (183)
                      ++|++++|  .++ +.+|..+.++++|+.|++++|.
T Consensus       198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            44444444  222 1233333444445555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.26  E-value=6.6e-12  Score=102.37  Aligned_cols=84  Identities=25%  Similarity=0.361  Sum_probs=43.2

Q ss_pred             CCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccC--CccccccCC------
Q 030065           87 SFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG--PIPNSLLNL------  158 (183)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l------  158 (183)
                      ++|++|++++|.+++ +|..   +++|++|++++|+++ .+|.   .+++|++|++++|++++  .+|..+..+      
T Consensus       317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~  388 (454)
T 1jl5_A          317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL  388 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred             CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence            356666666666663 4433   467777777777777 5665   36778888888888876  667766665      


Q ss_pred             -------CCCcEEeccCCcccc--cCCcc
Q 030065          159 -------SKLEVFDAIYNVIDG--TTTKM  178 (183)
Q Consensus       159 -------~~L~~L~l~~N~l~g--~ip~~  178 (183)
                             ++|+.|++++|+++|  .+|.+
T Consensus       389 ~~i~~~~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          389 AEVPELPQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             -----------------------------
T ss_pred             cccccccCcCCEEECCCCcCCccccchhh
Confidence                   678888888888876  67754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.23  E-value=7.1e-13  Score=105.54  Aligned_cols=111  Identities=14%  Similarity=0.226  Sum_probs=73.3

Q ss_pred             CcEEEEEccCCCCc-ccCC---ccCCCCCCCcEEEecCccCCC-----CChhhhcCCCCCcEEEecccccc----cccCc
Q 030065           63 QRVTALNLSDMGLG-GTIP---LHLGNLSFLVSLDVAHNNFHG-----HLPNELGQLRRLRFIRFGFNKLS----GSIPT  129 (183)
Q Consensus        63 ~~l~~L~l~~~~l~-~~~~---~~l~~l~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~L~l~~n~l~----~~~p~  129 (183)
                      +++++|++++|.++ +.++   ..+..+++|++|++++|.++.     ..+..+..+++|++|++++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            45666777766665 2233   234456677777777777762     22335667777778888777775    45666


Q ss_pred             cccCCCCCcEEEcccCcccCC----ccccc--cCCCCCcEEeccCCcccc
Q 030065          130 WIGVLSKLQTLRLYNNSFTGP----IPNSL--LNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       130 ~~~~l~~L~~L~L~~n~l~~~----~p~~~--~~l~~L~~L~l~~N~l~g  173 (183)
                      .+..+++|++|+|++|.+++.    +|..+  +.+++|+.|++++|.+++
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            677777788888888877643    44555  337778888888888776

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.18  E-value=5.6e-12  Score=99.67  Aligned_cols=113  Identities=19%  Similarity=0.230  Sum_probs=77.9

Q ss_pred             cEEEEEccCCCCcccCCccCCCC-----CCCcEEEecCccCCCCChhhhcC----C-CCCcEEEecccccccccCcc---
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNL-----SFLVSLDVAHNNFHGHLPNELGQ----L-RRLRFIRFGFNKLSGSIPTW---  130 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~~~~----l-~~L~~L~l~~n~l~~~~p~~---  130 (183)
                      ++++|++++|.+++..+..+..+     ++|++|++++|.+++..+..+..    + ++|++|++++|++++..+..   
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            68888888888876555555543     77888888888887666654333    3 78888888888887554433   


Q ss_pred             -ccC-CCCCcEEEcccCcccCC----ccccccCCC-CCcEEeccCCcccccCC
Q 030065          131 -IGV-LSKLQTLRLYNNSFTGP----IPNSLLNLS-KLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       131 -~~~-l~~L~~L~L~~n~l~~~----~p~~~~~l~-~L~~L~l~~N~l~g~ip  176 (183)
                       +.. .++|++|+|++|.+++.    ++..+...+ +|+.|++++|++++..+
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~  184 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC  184 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH
Confidence             333 25888888888888742    233344555 88888888888876544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.17  E-value=6.1e-12  Score=99.48  Aligned_cols=112  Identities=20%  Similarity=0.147  Sum_probs=90.7

Q ss_pred             CcEEEEEccCCCCcccCC----ccCCCCC-CCcEEEecCccCCCCChhhhcCC-----CCCcEEEecccccccccCcc--
Q 030065           63 QRVTALNLSDMGLGGTIP----LHLGNLS-FLVSLDVAHNNFHGHLPNELGQL-----RRLRFIRFGFNKLSGSIPTW--  130 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~--  130 (183)
                      .++++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+++..+..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            559999999999986555    5677788 89999999999998778777765     99999999999999766553  


Q ss_pred             --ccCC-CCCcEEEcccCcccCCccccc----cC-CCCCcEEeccCCccccc
Q 030065          131 --IGVL-SKLQTLRLYNNSFTGPIPNSL----LN-LSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       131 --~~~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L~~L~l~~N~l~g~  174 (183)
                        +..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  153 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK  153 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence              4444 899999999999985544333    34 36999999999999853

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.17  E-value=1.4e-10  Score=94.57  Aligned_cols=78  Identities=33%  Similarity=0.439  Sum_probs=40.3

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.+++ +| .+..+++|++|++++|.+++ +|..   .++|++|++++|++++ +| .+..+++|++|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            355666666666653 45 36666666666666666653 3432   2345555555555542 33 3444444444444


Q ss_pred             ccCccc
Q 030065          143 YNNSFT  148 (183)
Q Consensus       143 ~~n~l~  148 (183)
                      ++|.++
T Consensus       203 ~~N~l~  208 (454)
T 1jl5_A          203 DNNSLK  208 (454)
T ss_dssp             CSSCCS
T ss_pred             CCCcCC
Confidence            444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.05  E-value=1.1e-11  Score=100.49  Aligned_cols=87  Identities=23%  Similarity=0.179  Sum_probs=58.4

Q ss_pred             CCCcEEEecCccCCCC----ChhhhcCCCCCcEEEecccccccccCccccC-----CCCCcEEEcccCcccC----Cccc
Q 030065           87 SFLVSLDVAHNNFHGH----LPNELGQLRRLRFIRFGFNKLSGSIPTWIGV-----LSKLQTLRLYNNSFTG----PIPN  153 (183)
Q Consensus        87 ~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~----~~p~  153 (183)
                      ++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++    .+|.
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            3566666666666543    3444556677888888887776544433321     5678888888888875    5676


Q ss_pred             cccCCCCCcEEeccCCcccc
Q 030065          154 SLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       154 ~~~~l~~L~~L~l~~N~l~g  173 (183)
                      .+..+++|+.|++++|++++
T Consensus       393 ~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          393 TLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHCCCCCEEECCSSSCCH
T ss_pred             HHHhCCCccEEECCCCCCCH
Confidence            77778888888888888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.96  E-value=1.3e-11  Score=99.95  Aligned_cols=62  Identities=23%  Similarity=0.150  Sum_probs=29.5

Q ss_pred             CcEEEEEccCCCCcccC-----CccCCCCCCCcEEEecCccCCCC----ChhhhcCCCCCcEEEecccccc
Q 030065           63 QRVTALNLSDMGLGGTI-----PLHLGNLSFLVSLDVAHNNFHGH----LPNELGQLRRLRFIRFGFNKLS  124 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~  124 (183)
                      +++++|++++|.+++..     +..+..+++|++|++++|.++..    ++..+..+++|++|++++|.++
T Consensus       227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence            45556666666554321     11112344555555555555532    3344444555555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.91  E-value=4.9e-11  Score=90.69  Aligned_cols=66  Identities=20%  Similarity=0.176  Sum_probs=44.2

Q ss_pred             CCCCCcEEEeccccccc--ccCccccCCCCCcEEEcccCcccCCccccccCCC--CCcEEeccCCcccccCC
Q 030065          109 QLRRLRFIRFGFNKLSG--SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLS--KLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       109 ~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~l~~N~l~g~ip  176 (183)
                      .+++|+.|+|++|++++  .+|..+..+++|+.|+|++|.+++ + ..+..+.  +|+.|++++|.+++.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccC
Confidence            46777777777777775  344555667777777777777774 2 2233333  77777777777777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.90  E-value=2.9e-10  Score=90.48  Aligned_cols=87  Identities=14%  Similarity=0.198  Sum_probs=48.5

Q ss_pred             CCCCcEEEecCccCCCC----ChhhhcCCCCCcEEEecccccccc----cCccccCCCCCcEEEcccCcccC----Cccc
Q 030065           86 LSFLVSLDVAHNNFHGH----LPNELGQLRRLRFIRFGFNKLSGS----IPTWIGVLSKLQTLRLYNNSFTG----PIPN  153 (183)
Q Consensus        86 l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~  153 (183)
                      .++|+.|++++|.++..    ++..+...++|++|++++|.+++.    ++..+...++|++|+|++|.++.    .++.
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            34566666666665421    223334556666666666666532    23344555667777777766653    1223


Q ss_pred             cccCCCCCcEEeccCCccc
Q 030065          154 SLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       154 ~~~~l~~L~~L~l~~N~l~  172 (183)
                      .+...++|+.|++++|.|+
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCC
T ss_pred             HHHhCCCCCEEeccCCCCC
Confidence            3344566777777777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.77  E-value=9.9e-10  Score=87.39  Aligned_cols=111  Identities=14%  Similarity=0.134  Sum_probs=83.4

Q ss_pred             CcEEEEEccCCCCcccCCccCC-CCCCCcEEEecCccCCCCChhhh-----cCCCCCcEEEecccccccc----cCcccc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLG-NLSFLVSLDVAHNNFHGHLPNEL-----GQLRRLRFIRFGFNKLSGS----IPTWIG  132 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~----~p~~~~  132 (183)
                      .++++|++++|.++......+. .+++|+.|++++|.++......+     ...+.|++|++++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            5799999999988743333332 35678999999999875433333     2467899999999999742    344557


Q ss_pred             CCCCCcEEEcccCcccC----CccccccCCCCCcEEeccCCcccc
Q 030065          133 VLSKLQTLRLYNNSFTG----PIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       133 ~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      ..++|++|+|++|.++.    .++..+...++|+.|++++|.++.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            78999999999999874    234556777899999999999874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.72  E-value=9.2e-09  Score=78.16  Aligned_cols=79  Identities=22%  Similarity=0.304  Sum_probs=64.3

Q ss_pred             CCCCCcEEEecCccCCC--CChhhhcCCCCCcEEEecccccccccCccccCCC--CCcEEEcccCcccCCccc-------
Q 030065           85 NLSFLVSLDVAHNNFHG--HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLS--KLQTLRLYNNSFTGPIPN-------  153 (183)
Q Consensus        85 ~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~~p~-------  153 (183)
                      .+++|+.|+|++|.+++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|++|+|.+|.+.+.+|.       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            47799999999999996  4456677899999999999999854  2333344  999999999999977763       


Q ss_pred             cccCCCCCcEEe
Q 030065          154 SLLNLSKLEVFD  165 (183)
Q Consensus       154 ~~~~l~~L~~L~  165 (183)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            357899999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.65  E-value=3.1e-09  Score=88.56  Aligned_cols=92  Identities=15%  Similarity=0.104  Sum_probs=63.5

Q ss_pred             CCCCCCCcEEEecCc--cCCCCChhhhc-CCCCCcEEEeccccccc-ccCccccCCCCCcEEEcccCcccCC-ccccccC
Q 030065           83 LGNLSFLVSLDVAHN--NFHGHLPNELG-QLRRLRFIRFGFNKLSG-SIPTWIGVLSKLQTLRLYNNSFTGP-IPNSLLN  157 (183)
Q Consensus        83 l~~l~~L~~L~l~~n--~l~~~~p~~~~-~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~  157 (183)
                      +..+++|++|+++.+  .+++..+..+. .+++|++|++++|++++ .++..+..+++|+.|++++|.+++. ++..+..
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            344666777777532  34444444443 37788888888888875 3445567788999999999987643 3444567


Q ss_pred             CCCCcEEeccCCccccc
Q 030065          158 LSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       158 l~~L~~L~l~~N~l~g~  174 (183)
                      +++|+.|++++|++++.
T Consensus       512 l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          512 LPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CSSCCEEEEESCBCCTT
T ss_pred             cCccCeeECcCCcCCHH
Confidence            88999999999988754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.65  E-value=4e-09  Score=75.87  Aligned_cols=111  Identities=16%  Similarity=0.192  Sum_probs=86.1

Q ss_pred             CCcEEEEEccCC-CCcc----cCCccCCCCCCCcEEEecCccCCCC----ChhhhcCCCCCcEEEecccccccc----cC
Q 030065           62 HQRVTALNLSDM-GLGG----TIPLHLGNLSFLVSLDVAHNNFHGH----LPNELGQLRRLRFIRFGFNKLSGS----IP  128 (183)
Q Consensus        62 ~~~l~~L~l~~~-~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p  128 (183)
                      .+.+++|++++| .+..    .+...+...++|++|++++|.+...    +...+...+.|++|++++|.++..    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            477999999999 8764    2444566678999999999999743    233455568999999999999853    34


Q ss_pred             ccccCCCCCcEEEc--ccCcccCC----ccccccCCCCCcEEeccCCccc
Q 030065          129 TWIGVLSKLQTLRL--YNNSFTGP----IPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       129 ~~~~~l~~L~~L~L--~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      ..+...++|++|+|  ++|.+...    +...+...++|+.|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            56777889999999  88999742    3344566789999999999885

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.61  E-value=1.3e-07  Score=73.60  Aligned_cols=92  Identities=24%  Similarity=0.132  Sum_probs=41.6

Q ss_pred             CCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCc-EEEcccCcccCCccccccCCCCCcEEe
Q 030065           87 SFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQ-TLRLYNNSFTGPIPNSLLNLSKLEVFD  165 (183)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~  165 (183)
                      ++|+.+++++|.++...+..|..+++|+.+++++| ++..-+..|.++.+|+ .+++.. .++..-+..|.++++|+.++
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            44555555555554222233444555555555544 3322233444555555 555544 33311123344455555555


Q ss_pred             ccCCcccccCCccccc
Q 030065          166 AIYNVIDGTTTKMTFI  181 (183)
Q Consensus       166 l~~N~l~g~ip~~~~~  181 (183)
                      +++|+++ .|+..+|.
T Consensus       304 l~~n~i~-~I~~~aF~  318 (329)
T 3sb4_A          304 ATGDKIT-TLGDELFG  318 (329)
T ss_dssp             ECSSCCC-EECTTTTC
T ss_pred             eCCCccC-ccchhhhc
Confidence            5555554 44444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.56  E-value=1.4e-07  Score=73.44  Aligned_cols=102  Identities=10%  Similarity=0.044  Sum_probs=83.1

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCc-EEEecccccccccCccccCCCCCcEEE
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLR-FIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      .+++.+++++|+++..-+..|..+.+|+.+++.+| ++..-+..|..+++|+ .+++++ .++..-+..|.++++|+.++
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            57899999999998544556888999999999998 7745556788999999 999988 67645568899999999999


Q ss_pred             cccCcccCCccccccCCCCCcEEec
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDA  166 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l  166 (183)
                      +..|.++..-+..|.++++|+.+..
T Consensus       304 l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          304 ATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             eCCCccCccchhhhcCCcchhhhcc
Confidence            9999998333446888999988763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.44  E-value=1.4e-07  Score=78.57  Aligned_cols=79  Identities=11%  Similarity=0.133  Sum_probs=39.6

Q ss_pred             CcEEEEEccCCCCccc----CCccCCCCCCCcEEEecCccCCC----CChhhhcCCCCCcEEEecccccccccCccccCC
Q 030065           63 QRVTALNLSDMGLGGT----IPLHLGNLSFLVSLDVAHNNFHG----HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVL  134 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  134 (183)
                      +++++|++++|.+++.    ++..+..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+ +|..+..+
T Consensus       164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~  242 (592)
T 3ogk_B          164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA  242 (592)
T ss_dssp             TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC
T ss_pred             CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh
Confidence            5566777777665433    22222345566666666666652    222333445666666666665542 33333333


Q ss_pred             CCCcEEEc
Q 030065          135 SKLQTLRL  142 (183)
Q Consensus       135 ~~L~~L~L  142 (183)
                      ++|+.|++
T Consensus       243 ~~L~~L~l  250 (592)
T 3ogk_B          243 ANLEEFCG  250 (592)
T ss_dssp             TTCCEEEE
T ss_pred             hHHHhhcc
Confidence            33333333

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.33  E-value=3.6e-08  Score=82.10  Aligned_cols=88  Identities=10%  Similarity=0.085  Sum_probs=55.0

Q ss_pred             CCCCCCcEEEecCccCCCCChhhhcC-CCCCcEEEecccccccccCccc-cCCCCCcEEEcccCcccCCccc-cccCCCC
Q 030065           84 GNLSFLVSLDVAHNNFHGHLPNELGQ-LRRLRFIRFGFNKLSGSIPTWI-GVLSKLQTLRLYNNSFTGPIPN-SLLNLSK  160 (183)
Q Consensus        84 ~~l~~L~~L~l~~n~l~~~~p~~~~~-l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~  160 (183)
                      ..+++|++|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++.... .+..+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            3455666666655 444444444444 6778888888777765444333 4577788888888877533222 3345778


Q ss_pred             CcEEeccCCccc
Q 030065          161 LEVFDAIYNVID  172 (183)
Q Consensus       161 L~~L~l~~N~l~  172 (183)
                      |+.|++++|.++
T Consensus       508 L~~L~l~~~~~~  519 (594)
T 2p1m_B          508 MRSLWMSSCSVS  519 (594)
T ss_dssp             SSEEEEESSCCB
T ss_pred             CCEEeeeCCCCC
Confidence            888888888764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.25  E-value=1.5e-07  Score=78.36  Aligned_cols=107  Identities=10%  Similarity=0.126  Sum_probs=68.6

Q ss_pred             CcEEEEEccCCCCcccCCccCC-CCCCCcEEEecCc-cCCCC-ChhhhcCCCCCcEEEecccccccccCccc----cCCC
Q 030065           63 QRVTALNLSDMGLGGTIPLHLG-NLSFLVSLDVAHN-NFHGH-LPNELGQLRRLRFIRFGFNKLSGSIPTWI----GVLS  135 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~----~~l~  135 (183)
                      +++++|+++++.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+    ..++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            5678888888877765555554 4678888888877 44422 33344467888888888888765443333    3566


Q ss_pred             CCcEEEcccCc--ccC-CccccccCCCCCcEEeccCC
Q 030065          136 KLQTLRLYNNS--FTG-PIPNSLLNLSKLEVFDAIYN  169 (183)
Q Consensus       136 ~L~~L~L~~n~--l~~-~~p~~~~~l~~L~~L~l~~N  169 (183)
                      +|+.|++++|.  ++. .++..+.++++|+.|++++|
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            78888888776  221 11122244677888888776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.22  E-value=2e-07  Score=73.84  Aligned_cols=109  Identities=13%  Similarity=0.105  Sum_probs=51.1

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhc--CCCCCcEEEecc--cccccc-----cCccc-
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELG--QLRRLRFIRFGF--NKLSGS-----IPTWI-  131 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~--n~l~~~-----~p~~~-  131 (183)
                      .++++.|.++++.-. .++. + .+++|++|++..+.++......+.  .+++|+.|+|+.  |...+.     +...+ 
T Consensus       171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            367777887766311 2222 2 255666666666665433222332  456666666542  111110     01111 


Q ss_pred             -cCCCCCcEEEcccCcccCCccccc---cCCCCCcEEeccCCcccc
Q 030065          132 -GVLSKLQTLRLYNNSFTGPIPNSL---LNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       132 -~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~l~~N~l~g  173 (183)
                       ..+++|++|+|.+|.+....+..+   ..+++|++|+++.|.+++
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence             134566666666555543222211   134555555555555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.18  E-value=6.9e-07  Score=64.00  Aligned_cols=95  Identities=12%  Similarity=0.083  Sum_probs=73.2

Q ss_pred             CCccCCCCCCCcEEEecCc-cCCCC----ChhhhcCCCCCcEEEecccccccc----cCccccCCCCCcEEEcccCcccC
Q 030065           79 IPLHLGNLSFLVSLDVAHN-NFHGH----LPNELGQLRRLRFIRFGFNKLSGS----IPTWIGVLSKLQTLRLYNNSFTG  149 (183)
Q Consensus        79 ~~~~l~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~  149 (183)
                      +...+...++|++|++++| .+...    +...+...++|++|++++|.++..    +...+...++|++|+|++|.+..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3444666789999999999 88732    334566778999999999999743    23445566899999999999984


Q ss_pred             C----ccccccCCCCCcEEec--cCCcccc
Q 030065          150 P----IPNSLLNLSKLEVFDA--IYNVIDG  173 (183)
Q Consensus       150 ~----~p~~~~~l~~L~~L~l--~~N~l~g  173 (183)
                      .    +...+...++|+.|++  ++|.+..
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            2    4456777889999999  8899863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.16  E-value=1.2e-06  Score=62.30  Aligned_cols=84  Identities=12%  Similarity=0.106  Sum_probs=54.2

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCcc-CCCCChhhhcCC----CCCcEEEeccc-ccccccCccccCCCC
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN-FHGHLPNELGQL----RRLRFIRFGFN-KLSGSIPTWIGVLSK  136 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~n-~l~~~~p~~~~~l~~  136 (183)
                      -.++.|+++++.++..--..+..+++|++|+++++. ++...-..+..+    ++|++|+++++ +++...-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            457888888877765444556677778888887774 554333344443    35777777776 366544445566777


Q ss_pred             CcEEEcccCc
Q 030065          137 LQTLRLYNNS  146 (183)
Q Consensus       137 L~~L~L~~n~  146 (183)
                      |++|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.08  E-value=2.6e-06  Score=60.56  Aligned_cols=95  Identities=9%  Similarity=0.037  Sum_probs=70.1

Q ss_pred             cCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccc-cccccCccccCC----CCCcEEEcccCc-ccCCc
Q 030065           78 TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK-LSGSIPTWIGVL----SKLQTLRLYNNS-FTGPI  151 (183)
Q Consensus        78 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~  151 (183)
                      .+|.....-..|+.||++++.++..--..+..+++|+.|+|+++. +++..-..+..+    ++|++|+|+++. ++..-
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            344433223479999999999986666678899999999999985 775444455554    479999999984 77422


Q ss_pred             cccccCCCCCcEEeccCCc-cc
Q 030065          152 PNSLLNLSKLEVFDAIYNV-ID  172 (183)
Q Consensus       152 p~~~~~l~~L~~L~l~~N~-l~  172 (183)
                      -..+.++++|+.|+++++. ++
T Consensus       132 l~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCC
Confidence            2346789999999999984 44

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.05  E-value=3.9e-06  Score=66.41  Aligned_cols=112  Identities=13%  Similarity=0.227  Sum_probs=74.2

Q ss_pred             CCcEEEEEccCCCCcccCCccCC--CCCCCcEEEecC--ccCCCC-----Chhhh--cCCCCCcEEEecccccccccCcc
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLG--NLSFLVSLDVAH--NNFHGH-----LPNEL--GQLRRLRFIRFGFNKLSGSIPTW  130 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~--n~l~~~-----~p~~~--~~l~~L~~L~l~~n~l~~~~p~~  130 (183)
                      .++++.|++..+++.......+.  .+++|+.|+|+.  |...+.     +...+  ..+++|++|++.+|.+++..+..
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            36788899888877643333333  678899998853  221111     11122  24789999999998887543333


Q ss_pred             c---cCCCCCcEEEcccCcccCC----ccccccCCCCCcEEeccCCcccc
Q 030065          131 I---GVLSKLQTLRLYNNSFTGP----IPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       131 ~---~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      +   ..+++|++|+|+.|.+++.    ++..+..+++|+.|+++.|.++.
T Consensus       272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            3   2478899999999988742    33344567889999999998763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.04  E-value=2e-05  Score=63.14  Aligned_cols=113  Identities=12%  Similarity=0.019  Sum_probs=71.7

Q ss_pred             cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCC-----CCChhhhcCCCCCcEEEecccccccccCccccCCCCCc
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFH-----GHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQ  138 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~  138 (183)
                      .++.+.+. ++++..-...|.++++|+.+.+.+|.+.     ...+..|..+++|+.+.+.. .++..-...|.++.+|+
T Consensus       249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred             CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence            34555553 3344233455667778888888777654     23345677788888888874 46533446777888888


Q ss_pred             EEEcccCcccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065          139 TLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       139 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                      .+.+..| ++..-...|.++ +|+.+++.+|.+. .++...|.
T Consensus       327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~  366 (401)
T 4fdw_A          327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWY  366 (401)
T ss_dssp             EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCC
T ss_pred             EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-cccccccc
Confidence            8888655 542223456677 8888888888776 45555553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.79  E-value=9.2e-05  Score=59.27  Aligned_cols=50  Identities=20%  Similarity=0.197  Sum_probs=22.9

Q ss_pred             cccCCCCCcEEEcccCcccC----Cc-cccccCCCCCcEEeccCCcccccCCccccc
Q 030065          130 WIGVLSKLQTLRLYNNSFTG----PI-PNSLLNLSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       130 ~~~~l~~L~~L~L~~n~l~~----~~-p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                      .|.++++|+.+++.+|.+..    .+ +..|..+++|+.+++. ++++ .|+..+|.
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~  320 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLG  320 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTT
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhc
Confidence            44445555555555544320    11 2234455555555555 2333 45555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.39  E-value=0.00042  Score=46.59  Aligned_cols=56  Identities=23%  Similarity=0.284  Sum_probs=43.5

Q ss_pred             EEEccCCCCc-ccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccc
Q 030065           67 ALNLSDMGLG-GTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS  124 (183)
Q Consensus        67 ~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  124 (183)
                      .++.++++++ ..+|..+.  .++++|+|++|.|+..-+..|..+++|++|+|.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            6788888886 35665543  37899999999999544556778899999999999775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.30  E-value=0.00056  Score=45.97  Aligned_cols=57  Identities=19%  Similarity=0.248  Sum_probs=40.5

Q ss_pred             cEEEecCccCC-CCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCccc
Q 030065           90 VSLDVAHNNFH-GHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFT  148 (183)
Q Consensus        90 ~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  148 (183)
                      ..++.+++.++ ..+|..+  .++|+.|+|++|+|+..-+..|..+++|+.|+|.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777777775 3556543  346888888888888433455677888888888888775

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.10  E-value=0.0022  Score=50.32  Aligned_cols=113  Identities=12%  Similarity=0.044  Sum_probs=67.5

Q ss_pred             cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  143 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  143 (183)
                      .++.+.+..+ ++..-...+.....|+.+.+..+ ++......|..+++|+.+.+.++.++..-...|.++.+|+.+.+.
T Consensus       241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            3445555433 33222334555666777776543 332333456777888888888777763335677788888888886


Q ss_pred             cCcccCCcc-ccccCCCCCcEEeccCCcccccCCcccccC
Q 030065          144 NNSFTGPIP-NSLLNLSKLEVFDAIYNVIDGTTTKMTFID  182 (183)
Q Consensus       144 ~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~  182 (183)
                      .+ ++ .++ ..|.++.+|+.+.+..+ ++ .|...+|.+
T Consensus       319 ~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~-~I~~~aF~~  354 (379)
T 4h09_A          319 TA-LK-TIQVYAFKNCKALSTISYPKS-IT-LIESGAFEG  354 (379)
T ss_dssp             TT-CC-EECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTT
T ss_pred             cc-cc-EEHHHHhhCCCCCCEEEECCc-cC-EEchhHhhC
Confidence            54 44 343 34667778887777544 43 455555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.04  E-value=0.00026  Score=51.16  Aligned_cols=111  Identities=11%  Similarity=0.122  Sum_probs=77.4

Q ss_pred             CCcEEEEEccCC-CCcc----cCCccCCCCCCCcEEEecCccCCCC----ChhhhcCCCCCcEEEeccccccccc----C
Q 030065           62 HQRVTALNLSDM-GLGG----TIPLHLGNLSFLVSLDVAHNNFHGH----LPNELGQLRRLRFIRFGFNKLSGSI----P  128 (183)
Q Consensus        62 ~~~l~~L~l~~~-~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~----p  128 (183)
                      ...++.|+++++ .+..    .+-..+..-++|+.|+|++|.+...    +-..+..-+.|++|+|+.|.++...    -
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            467999999985 7653    2344456667899999999999733    2233444578999999999998532    2


Q ss_pred             ccccCCCCCcEEEcccCc---ccC----CccccccCCCCCcEEeccCCccc
Q 030065          129 TWIGVLSKLQTLRLYNNS---FTG----PIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       129 ~~~~~l~~L~~L~L~~n~---l~~----~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      ..+..-+.|+.|+|++|.   +..    .+...+..-+.|+.|+++.|.+.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            445666789999998653   331    12334556678999999887654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.78  E-value=0.0092  Score=47.15  Aligned_cols=87  Identities=11%  Similarity=0.081  Sum_probs=55.1

Q ss_pred             ccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCcc-ccccCCC
Q 030065           81 LHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIP-NSLLNLS  159 (183)
Q Consensus        81 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~  159 (183)
                      ..+.++..|+.+.+.. .++..-...|..+.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++ .++ ..|.+++
T Consensus       282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~  357 (394)
T 4gt6_A          282 GAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCT  357 (394)
T ss_dssp             TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCT
T ss_pred             cccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCC
Confidence            3355566677777653 344233345667788888888754 44233456777888888888654 54 343 4567788


Q ss_pred             CCcEEeccCCcc
Q 030065          160 KLEVFDAIYNVI  171 (183)
Q Consensus       160 ~L~~L~l~~N~l  171 (183)
                      +|+.+++.++..
T Consensus       358 ~L~~i~~~~~~~  369 (394)
T 4gt6_A          358 ALNNIEYSGSRS  369 (394)
T ss_dssp             TCCEEEESSCHH
T ss_pred             CCCEEEECCcee
Confidence            888888877643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.66  E-value=0.013  Score=45.83  Aligned_cols=97  Identities=12%  Similarity=0.078  Sum_probs=68.8

Q ss_pred             ccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCcc-ccccCCC
Q 030065           81 LHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIP-NSLLNLS  159 (183)
Q Consensus        81 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~  159 (183)
                      ..+.....|+.+.+..+ ++..-...+..+.+|+.+.+..+ ++..-...|.++.+|+.+.+..+.++ .++ ..|.++.
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~  310 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCV  310 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCC
Confidence            34556677888877665 44234456777888888888654 44233457888999999999988887 454 4577889


Q ss_pred             CCcEEeccCCcccccCCcccccC
Q 030065          160 KLEVFDAIYNVIDGTTTKMTFID  182 (183)
Q Consensus       160 ~L~~L~l~~N~l~g~ip~~~~~~  182 (183)
                      +|+.+.+..+ ++ .|+..+|.+
T Consensus       311 ~L~~i~lp~~-l~-~I~~~aF~~  331 (379)
T 4h09_A          311 KLSSVTLPTA-LK-TIQVYAFKN  331 (379)
T ss_dssp             TCCEEECCTT-CC-EECTTTTTT
T ss_pred             CCCEEEcCcc-cc-EEHHHHhhC
Confidence            9999999754 44 677777754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.62  E-value=0.001  Score=48.02  Aligned_cols=87  Identities=15%  Similarity=0.095  Sum_probs=63.6

Q ss_pred             CCCCCCCcEEEecCc-cCCCC----ChhhhcCCCCCcEEEeccccccccc----CccccCCCCCcEEEcccCcccCC---
Q 030065           83 LGNLSFLVSLDVAHN-NFHGH----LPNELGQLRRLRFIRFGFNKLSGSI----PTWIGVLSKLQTLRLYNNSFTGP---  150 (183)
Q Consensus        83 l~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~---  150 (183)
                      +..-++|+.|++++| .|...    +-..+..-+.|+.|+|++|++....    ...+..-+.|++|+|+.|.|...   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            445668999999986 77522    2345566789999999999998543    23445568999999999999832   


Q ss_pred             -ccccccCCCCCcEEeccCC
Q 030065          151 -IPNSLLNLSKLEVFDAIYN  169 (183)
Q Consensus       151 -~p~~~~~l~~L~~L~l~~N  169 (183)
                       +-..+..-+.|+.|++++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence             2234556678999999865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.46  E-value=0.0087  Score=47.31  Aligned_cols=102  Identities=12%  Similarity=0.068  Sum_probs=65.5

Q ss_pred             cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  143 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  143 (183)
                      .++.+.+. +.++..-...|.++.+|+.+.+..+ ++..-...|..+.+|+.+.+..+ ++..-...|.++.+|+.+++.
T Consensus       289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred             ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence            45555554 3344233345777899999999865 55344567889999999999765 553345789999999999999


Q ss_pred             cCcccCCccccccCCCCCcEEeccCCcc
Q 030065          144 NNSFTGPIPNSLLNLSKLEVFDAIYNVI  171 (183)
Q Consensus       144 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l  171 (183)
                      ++...   -..+....+|+.+.+..|.+
T Consensus       366 ~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          366 GSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             SCHHH---HHTCBCCCCC----------
T ss_pred             Cceee---hhhhhccCCCCEEEeCCCCE
Confidence            88654   13566778888888776654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.40  E-value=0.021  Score=45.12  Aligned_cols=81  Identities=10%  Similarity=0.005  Sum_probs=42.5

Q ss_pred             CCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCcc-ccccCCCCCcE
Q 030065           85 NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIP-NSLLNLSKLEV  163 (183)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~  163 (183)
                      ...+|+.+.+..+ ++..-...|..+++|+.+++..+ ++..-...|.++.+|+.+++..+ ++ .++ ..|.++++|+.
T Consensus       295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~  370 (394)
T 4fs7_A          295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKK  370 (394)
T ss_dssp             TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCE
T ss_pred             ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCE
Confidence            3445555555433 33222334555666666666543 44222455666666776666555 43 232 34566667776


Q ss_pred             EeccCC
Q 030065          164 FDAIYN  169 (183)
Q Consensus       164 L~l~~N  169 (183)
                      +++..+
T Consensus       371 i~lp~~  376 (394)
T 4fs7_A          371 VELPKR  376 (394)
T ss_dssp             EEEEGG
T ss_pred             EEECCC
Confidence            666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.30  E-value=0.0086  Score=47.32  Aligned_cols=97  Identities=14%  Similarity=0.069  Sum_probs=69.3

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      ..++.+.+..+ ++..-...|..+.+|+.+++..+ ++..-...|..+++|+.+.+..+ ++..-...|.++.+|+.+++
T Consensus       297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred             ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence            45666676643 55333455778899999999754 66344567889999999999877 66344578999999999999


Q ss_pred             ccCcccCCccccccCCCCCcEE
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVF  164 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L  164 (183)
                      ..+ ++ .+...+.++++|+.+
T Consensus       374 p~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          374 PKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             EGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCC-CE-EhhheecCCCCCcEE
Confidence            765 33 344567777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.2 bits (157), Expect = 1e-13
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 21  TDQSALLAFKARVVDYRSDLTNNWSISYPIC--SWVGISC--GSRHQRVTALNLSDMGLG 76
            D+ ALL  K  + +      ++W  +   C  +W+G+ C   ++  RV  L+LS + L 
Sbjct: 6   QDKQALLQIKKDLGN--PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63

Query: 77  G--TIPLHLGNLSFLVSLDVAHN-NFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGV 133
               IP  L NL +L  L +    N  G +P  + +L +L ++      +SG+IP ++  
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123

Query: 134 LSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174
           +  L TL    N+ +G +P S+ +L  L       N I G 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.4 bits (129), Expect = 8e-10
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 93  DVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFT--GP 150
           D+ +N  +G LP  L QL+ L  +   FN L G IP   G L +       NN      P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

Query: 151 IP 152
           +P
Sbjct: 309 LP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.8 bits (125), Expect = 3e-09
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 121 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
           N++ G++P  +  L  L +L +  N+  G IP    NL + +V     N
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 4e-09
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 42  NNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG 101
                         +      + +  L+L +  + GT+P  L  L FL SL+V+ NN  G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 102 HLPNELGQLRRLRFIRFGFNKLSGSIP 128
            +P + G L+R     +  NK     P
Sbjct: 283 EIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 26/152 (17%)

Query: 38  SDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLH--------------- 82
           + LTN   +         ++  S   ++T L L    +    PL                
Sbjct: 238 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297

Query: 83  -----LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKL 137
                + NL  L  L +  NN     P  +  L +L+ + F  NK+S    + +  L+ +
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 138 QTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169
             L   +N  +   P  L NL+++        
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 8/81 (9%)

Query: 85  NLSFLVSLDVAHNNFHGHLP-NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 143
            L+  +   +   N    +   +L Q+  L+  R G   + G     +  L+ L  +   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 144 NNSFTGPIPNSLLNLSKLEVF 164
           NN  T   P  L NL+KL   
Sbjct: 75  NNQLTDITP--LKNLTKLVDI 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 19/124 (15%), Positives = 35/124 (28%), Gaps = 9/124 (7%)

Query: 51  CSWVGISCGSRH---------QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG 101
           C    + C                  L+L +  +         NL  L +L + +N    
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 102 HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKL 161
             P     L +L  +    N+L          L +L+            + N L  +  +
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 162 EVFD 165
           E+  
Sbjct: 130 ELGT 133

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 7/181 (3%)

Query: 7   SIASLAMTTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISC--GSRHQR 64
            I  +      NL    + +L                  +     S   +        + 
Sbjct: 42  KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT 101

Query: 65  VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFH--GHLPNELGQLRRLRFIRFGFNK 122
           +  L + +  +          L+ ++ +++  N     G        +++L +IR     
Sbjct: 102 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 161

Query: 123 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFID 182
           ++ +IP   G+   L  L L  N  T     SL  L+ L      +N I           
Sbjct: 162 IT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 218

Query: 183 T 183
            
Sbjct: 219 P 219

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 15/59 (25%), Positives = 21/59 (35%)

Query: 113 LRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171
              +    NK++         L  L TL L NN  +   P +   L KLE      N +
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 2e-06
 Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 9/128 (7%)

Query: 36  YRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVA 95
                             V  +  S    +             I         L  L+V+
Sbjct: 233 DNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 292

Query: 96  HNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSL 155
           +N     LP    +L RL      FN L+  +P        L+ L +  N      P+  
Sbjct: 293 NNKLI-ELPALPPRLERLIA---SFNHLA-EVPEL---PQNLKQLHVEYNPLRE-FPDIP 343

Query: 156 LNLSKLEV 163
            ++  L +
Sbjct: 344 ESVEDLRM 351

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-05
 Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 9/134 (6%)

Query: 36  YRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVA 95
           +    +   +      S +  +      +++   L D G+           S L  L +A
Sbjct: 318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 377

Query: 96  HNNFHG----HLPNELGQLRRLRFIRFGFNKLSGSIPTWIG-----VLSKLQTLRLYNNS 146
             +        L   L     LR +    N L  +    +          L+ L LY+  
Sbjct: 378 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 437

Query: 147 FTGPIPNSLLNLSK 160
           ++  + + L  L K
Sbjct: 438 WSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 5e-04
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 89  LVSLDVAHNNF-HGHLPNELGQLRRLRFIRFGFNKLSG----SIPTWIGVLSKLQTLRLY 143
           + SLD+             L  L++ + +R     L+      I + + V   L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 144 NNSFTGPIPNSLLNL 158
           +N       + +L  
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           L+L+   L  T+  HL  L  +  LD++HN      P  L  LR L  ++   N L    
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 128 PTWIGVLSKLQTLRLYNNSFTG-PIPNSLLNLSKLEVFDAIYN 169
                   +LQ L L NN          L++  +L + +   N
Sbjct: 60  GVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 6e-05
 Identities = 24/128 (18%), Positives = 38/128 (29%)

Query: 42  NNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG 101
                       V  +      R+  L+L   GL    P     L+ L  L +  N    
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 102 HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKL 161
              +    L  L  +    N++S         L  L  L L+ N      P++  +L +L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 162 EVFDAIYN 169
                  N
Sbjct: 204 MTLYLFAN 211

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 1/108 (0%)

Query: 68  LNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI 127
           L L    +          L  L  L +  N      P+    L RL  +    N LS   
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 128 PTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTT 175
              +  L  LQ LRL +N +        L  + L+ F    + +  + 
Sbjct: 218 TEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSL 264

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 96  HNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSL 155
             N        L  L +L  ++   NK+S   P  +  L  L  + L NN  +   P  L
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--L 213

Query: 156 LNLSKLEVFD 165
            N S L +  
Sbjct: 214 ANTSNLFIVT 223

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 6e-04
 Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 1/52 (1%)

Query: 96  HNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSF 147
           +NN        L  L  L  +    N L  +IP        L    L+ N +
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.002
 Identities = 11/74 (14%), Positives = 14/74 (18%)

Query: 92  LDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPI 151
           L +  N             +         N L           S    L +         
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 152 PNSLLNLSKLEVFD 165
              L NL KL    
Sbjct: 218 SYGLENLKKLRARS 231

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.6
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.51
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.5
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.5
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.48
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.47
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.31
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.23
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.2
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.2
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.2
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.13
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.11
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.08
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.07
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.05
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.03
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.97
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.69
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.41
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.4
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.17
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.17
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.17
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.81
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.47
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.97
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.7

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=2.6e-28  Score=188.25  Aligned_cols=161  Identities=28%  Similarity=0.484  Sum_probs=146.2

Q ss_pred             CChHHHHHHHHHHHhcccCCCCCCCCCCCCCCCC--CceeeeecCCC--CcEEEEEccCCCCcc--cCCccCCCCCCCcE
Q 030065           18 NLTTDQSALLAFKARVVDYRSDLTNNWSISYPIC--SWVGISCGSRH--QRVTALNLSDMGLGG--TIPLHLGNLSFLVS   91 (183)
Q Consensus        18 ~~~~~~~~l~~~k~~~~~~~~~~~~~w~~~~~~c--~w~gv~c~~~~--~~l~~L~l~~~~l~~--~~~~~l~~l~~L~~   91 (183)
                      |.++|++||++||+.+.++  ..+.+|....++|  .|.||+|+...  .+|+.|+++++++.|  .+|+++.++++|++
T Consensus         3 c~~~e~~aLl~~k~~~~~~--~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~   80 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCC--GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCHHHHHHHHHHHHHCCCC--CcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence            6789999999999998643  4688999888999  49999998633  489999999999987  58899999999999


Q ss_pred             EEecC-ccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCc
Q 030065           92 LDVAH-NNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNV  170 (183)
Q Consensus        92 L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~  170 (183)
                      |++++ |.++|.+|..++.+++|++|++++|++.+..+..+..+..|+.++++.|.+.+.+|..+.++++++.+++++|.
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccc
Confidence            99997 89999999999999999999999999998888889999999999999999999999999999999999999999


Q ss_pred             ccccCCcccc
Q 030065          171 IDGTTTKMTF  180 (183)
Q Consensus       171 l~g~ip~~~~  180 (183)
                      ++|.+|..++
T Consensus       161 l~~~ip~~~~  170 (313)
T d1ogqa_         161 ISGAIPDSYG  170 (313)
T ss_dssp             CEEECCGGGG
T ss_pred             cccccccccc
Confidence            9999998654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=8.5e-19  Score=125.82  Aligned_cols=131  Identities=25%  Similarity=0.358  Sum_probs=110.8

Q ss_pred             CCCCCCceeeeecCCC---------CcEEEEEccCCCCcccC-CccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEE
Q 030065           47 SYPICSWVGISCGSRH---------QRVTALNLSDMGLGGTI-PLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFI  116 (183)
Q Consensus        47 ~~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  116 (183)
                      ..+.|.|..|.|....         .++++|++++|.++..+ +..|..+++|++|++++|.+....+..+..+++|++|
T Consensus         4 ~~C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L   83 (192)
T d1w8aa_           4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCCEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccccee
Confidence            3456778888886421         57899999999998645 4556789999999999999998888889999999999


Q ss_pred             EecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065          117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       117 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                      ++++|++++..|..|.++++|++|+|++|++++..|..|..+++|+++++++|.+....+.
T Consensus        84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_          84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             eeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch
Confidence            9999999976677899999999999999999955566688999999999999999755443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.4e-16  Score=106.45  Aligned_cols=102  Identities=27%  Similarity=0.398  Sum_probs=90.2

Q ss_pred             EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccC
Q 030065           66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN  145 (183)
Q Consensus        66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n  145 (183)
                      +.|++++|.++ .++ .+..+++|++|++++|.++ .+|+.+..+++|++|++++|+++ .+| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            36899999998 665 4889999999999999999 78888999999999999999998 565 4889999999999999


Q ss_pred             cccCCcc--ccccCCCCCcEEeccCCcccc
Q 030065          146 SFTGPIP--NSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       146 ~l~~~~p--~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      +++ .+|  ..+..+++|+.+++++|++++
T Consensus        76 ~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCC-SSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccC-CCCCchhhcCCCCCCEEECCCCcCCc
Confidence            998 444  457889999999999999974

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=2.3e-16  Score=112.89  Aligned_cols=112  Identities=22%  Similarity=0.253  Sum_probs=97.3

Q ss_pred             EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCC-hhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEccc
Q 030065           66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHL-PNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN  144 (183)
Q Consensus        66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~  144 (183)
                      +.+++++++++ .+|..+.  +++++|++++|.|++.+ +..|..+++|+.|++++|.+.+..+..+..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            47899999999 8888765  58999999999998644 45678899999999999999988888999999999999999


Q ss_pred             CcccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065          145 NSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       145 n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                      |+++...|..|.++++|++|+|++|+|+ .||+.+|.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~-~i~~~~f~  123 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFE  123 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSST
T ss_pred             ccccccCHHHHhCCCcccccccCCcccc-ccCHHHhc
Confidence            9999555566889999999999999999 56666664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.60  E-value=4.6e-16  Score=118.89  Aligned_cols=119  Identities=29%  Similarity=0.443  Sum_probs=110.0

Q ss_pred             CCCcEEEEEccC-CCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcE
Q 030065           61 RHQRVTALNLSD-MGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQT  139 (183)
Q Consensus        61 ~~~~l~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  139 (183)
                      ..+++++|++++ |++.|.+|+.+.++++|++|++++|++.+..+..+..+..|+.+++++|.+.+.+|..+..++.+++
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccce
Confidence            357899999987 8999999999999999999999999999888888999999999999999999999999999999999


Q ss_pred             EEcccCcccCCccccccCCCCC-cEEeccCCcccccCCccc
Q 030065          140 LRLYNNSFTGPIPNSLLNLSKL-EVFDAIYNVIDGTTTKMT  179 (183)
Q Consensus       140 L~L~~n~l~~~~p~~~~~l~~L-~~L~l~~N~l~g~ip~~~  179 (183)
                      +++++|.++|.+|..+..+.++ +.++++.|+++|.+|..+
T Consensus       154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~  194 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             eeccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999888886 899999999998887653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.3e-14  Score=108.46  Aligned_cols=117  Identities=27%  Similarity=0.234  Sum_probs=72.0

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.++ ..+..+..+++|++|++++|.+....+..+..+.+++++++++|.++...+..+..++.++.+++
T Consensus        77 ~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l  155 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (266)
T ss_dssp             TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccc
Confidence            34444455544444 23334444455555555555544333334444555666666666665333445566778888888


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                      ++|++++..+..+..+++|++|++++|+|+ .||+.+|.
T Consensus       156 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~  193 (266)
T d1p9ag_         156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (266)
T ss_dssp             TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             ccccccccCccccccccccceeecccCCCc-ccChhHCC
Confidence            888888555556778888888888888888 78877763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.5e-15  Score=103.46  Aligned_cols=107  Identities=22%  Similarity=0.246  Sum_probs=89.5

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      ..++.|++++|.++ .++..+..+++|++|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++|++|++
T Consensus        18 ~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            46899999999998 66765677899999999999998 554 5888999999999999999444444567999999999


Q ss_pred             ccCcccCCccc--cccCCCCCcEEeccCCcccc
Q 030065          143 YNNSFTGPIPN--SLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       143 ~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g  173 (183)
                      ++|+++ .++.  .+..+++|++|++++|.++.
T Consensus        95 ~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          95 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             cccccc-ccccccccccccccchhhcCCCcccc
Confidence            999998 5553  57789999999999999873

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.5e-14  Score=96.88  Aligned_cols=104  Identities=17%  Similarity=0.101  Sum_probs=84.3

Q ss_pred             EEEccCCCCcccCCccCCCCCCCcEEEecCc-cCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccC
Q 030065           67 ALNLSDMGLGGTIPLHLGNLSFLVSLDVAHN-NFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN  145 (183)
Q Consensus        67 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n  145 (183)
                      .+++.++++. ..|..+..+++|+.|++++| .++..-+..|..+++|+.|++++|+++...+..|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3555666666 66777888889999999766 487555567888999999999999999666778899999999999999


Q ss_pred             cccCCccccccCCCCCcEEeccCCccc
Q 030065          146 SFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       146 ~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      +++ .+|.......+|+.|++++|.+.
T Consensus        91 ~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCc-ccChhhhccccccccccCCCccc
Confidence            998 77777666668999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5e-14  Score=106.08  Aligned_cols=110  Identities=21%  Similarity=0.214  Sum_probs=51.7

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.+....+..+.....|+.+++++|.+++..+..+..+++|+.|++++|++++..+..+.++++|+.+++
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            34455555555544333333344444555555555554333333444445555555555554333344444555555555


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      ++|++++..|..+..+++|++|++++|.+.
T Consensus       185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hhccccccChhHhhhhhhcccccccccccc
Confidence            555554444444444455555555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.6e-14  Score=107.66  Aligned_cols=115  Identities=19%  Similarity=0.140  Sum_probs=102.5

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      ...++.+++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+++++++|++++..|..|..+++|++|+
T Consensus       128 ~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             hcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence            36789999999999965566678899999999999999977777889999999999999999988899999999999999


Q ss_pred             cccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065          142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      +++|.+++..|..+..+++|++|++++|.+...-+
T Consensus       208 l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            99999997666778899999999999999875433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.7e-13  Score=102.30  Aligned_cols=111  Identities=23%  Similarity=0.129  Sum_probs=99.2

Q ss_pred             CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065           61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  140 (183)
Q Consensus        61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  140 (183)
                      ..+.++.|+++++.+....+..+..+.+++.+++++|.++...+..+..+++++.+++++|++++..+..+..+++|++|
T Consensus        98 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L  177 (266)
T d1p9ag_          98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL  177 (266)
T ss_dssp             TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred             cccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCcccccccccccee
Confidence            34789999999999986666777889999999999999996666667789999999999999997667788999999999


Q ss_pred             EcccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      +|++|+++ .+|..+..+++|+.|++++|.+.
T Consensus       178 ~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             ECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            99999999 89999999999999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=1.3e-13  Score=104.64  Aligned_cols=116  Identities=20%  Similarity=0.197  Sum_probs=78.9

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      .+++.|++++|...+..+..+..++.+++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|+|
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEEC
Confidence            45667777777766666666677777777777777777655666677777777777777777 56767777777777777


Q ss_pred             ccCcccCCcccc-------ccCCCCCcEEeccCCccc-ccCCcccc
Q 030065          143 YNNSFTGPIPNS-------LLNLSKLEVFDAIYNVID-GTTTKMTF  180 (183)
Q Consensus       143 ~~n~l~~~~p~~-------~~~l~~L~~L~l~~N~l~-g~ip~~~~  180 (183)
                      ++|+++ .++..       ...+++|+.|++++|.+. +.+++..|
T Consensus       250 s~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f  294 (305)
T d1xkua_         250 HNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF  294 (305)
T ss_dssp             CSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             CCCccC-ccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHh
Confidence            777776 44332       234566777777777764 45666555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=1.7e-13  Score=103.95  Aligned_cols=114  Identities=22%  Similarity=0.286  Sum_probs=101.9

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      ..++.+++.++.+. .+|..+  +++|+.|++++|..++..+..+..++.+++|++++|.+++..+..+.++++|++|+|
T Consensus       150 ~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L  226 (305)
T d1xkua_         150 KKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  226 (305)
T ss_dssp             TTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             cccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeec
Confidence            57889999999988 666544  579999999999999888889999999999999999999777888899999999999


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~  181 (183)
                      ++|+++ .+|..+..+++|++|++++|+|+ .|+...|.
T Consensus       227 ~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~  263 (305)
T d1xkua_         227 NNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFC  263 (305)
T ss_dssp             CSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSS
T ss_pred             cccccc-ccccccccccCCCEEECCCCccC-ccChhhcc
Confidence            999999 78999999999999999999999 77776664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=5.3e-13  Score=88.70  Aligned_cols=80  Identities=23%  Similarity=0.354  Sum_probs=72.0

Q ss_pred             cEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCC
Q 030065           90 VSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN  169 (183)
Q Consensus        90 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N  169 (183)
                      ++|++++|.++ .++ .+..+++|++|++++|+++ .+|+.+..+++|++|++++|.++ .+| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            57999999999 665 4889999999999999999 78888999999999999999999 666 4899999999999999


Q ss_pred             ccccc
Q 030065          170 VIDGT  174 (183)
Q Consensus       170 ~l~g~  174 (183)
                      +++..
T Consensus        76 ~i~~~   80 (124)
T d1dcea3          76 RLQQS   80 (124)
T ss_dssp             CCCSS
T ss_pred             ccCCC
Confidence            99843

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=9.3e-13  Score=91.47  Aligned_cols=101  Identities=19%  Similarity=0.164  Sum_probs=84.4

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccC--ccccCCCCCcE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQT  139 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~  139 (183)
                      ..+++.|++++|.++ .++ .+..+++|++|++++|.++...+..+..+++|++|++++|+++ .++  ..+..+++|++
T Consensus        40 l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~  116 (162)
T d1a9na_          40 LDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY  116 (162)
T ss_dssp             TTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred             cccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccccccccch
Confidence            467999999999999 554 4889999999999999999444444567999999999999998 444  46788999999


Q ss_pred             EEcccCcccCCccc----cccCCCCCcEEec
Q 030065          140 LRLYNNSFTGPIPN----SLLNLSKLEVFDA  166 (183)
Q Consensus       140 L~L~~n~l~~~~p~----~~~~l~~L~~L~l  166 (183)
                      |++++|.++ ..|.    .+..+++|++||-
T Consensus       117 L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         117 LCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             hhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            999999998 5554    3678999999883

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=3.4e-11  Score=85.91  Aligned_cols=107  Identities=28%  Similarity=0.375  Sum_probs=69.5

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCCh---------------------hhhcCCCCCcEEEecc
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLP---------------------NELGQLRRLRFIRFGF  120 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p---------------------~~~~~l~~L~~L~l~~  120 (183)
                      .+++++|++++|.+++ +++ +..+++|++|++++|.+. .++                     ..+..+++|+.+++++
T Consensus        61 l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~  137 (199)
T d2omxa2          61 LNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS  137 (199)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             CCCcCcCccccccccC-ccc-ccCCcccccccccccccc-cccccccccccccccccccccccccccchhhhhHHhhhhh
Confidence            3567777777777663 332 566666666666666655 222                     2344566666777776


Q ss_pred             cccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065          121 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       121 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      |++. .++ .+..+++|+.|++.+|+++ .++ .+.++++|+.|++++|++++ +|
T Consensus       138 n~l~-~~~-~l~~~~~L~~L~l~~n~l~-~l~-~l~~l~~L~~L~ls~N~i~~-i~  188 (199)
T d2omxa2         138 NTIS-DIS-ALSGLTSLQQLNFSSNQVT-DLK-PLANLTTLERLDISSNKVSD-IS  188 (199)
T ss_dssp             SCCC-CCG-GGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCCC-CG
T ss_pred             hhhc-ccc-ccccccccccccccccccc-CCc-cccCCCCCCEEECCCCCCCC-Cc
Confidence            6665 333 4666777777777777777 343 37788888999999888874 44

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.9e-11  Score=84.16  Aligned_cols=94  Identities=12%  Similarity=0.065  Sum_probs=79.4

Q ss_pred             CCCCcEEEecCccCCCCChhhhcCCCCCcEEEeccc-ccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEE
Q 030065           86 LSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFN-KLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVF  164 (183)
Q Consensus        86 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  164 (183)
                      ....+.++.+++.+. ..|..+..+++|+.|++++| .++..-+..|.++++|+.|+|++|+++..-|..|..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            334567888999888 77888999999999999866 4884445679999999999999999995446678999999999


Q ss_pred             eccCCcccccCCccccc
Q 030065          165 DAIYNVIDGTTTKMTFI  181 (183)
Q Consensus       165 ~l~~N~l~g~ip~~~~~  181 (183)
                      +|++|+|+ .+|..+|.
T Consensus        86 ~Ls~N~l~-~l~~~~~~  101 (156)
T d2ifga3          86 NLSFNALE-SLSWKTVQ  101 (156)
T ss_dssp             ECCSSCCS-CCCSTTTC
T ss_pred             eccCCCCc-ccChhhhc
Confidence            99999999 78887774

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=2.7e-14  Score=102.58  Aligned_cols=109  Identities=23%  Similarity=0.228  Sum_probs=91.2

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  141 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  141 (183)
                      ..++++|++++|.++ .++ .+..+++|++|++++|.++ .+|.....++.|++|++++|+++ .++ .+..+++|++|+
T Consensus        47 L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~  121 (198)
T d1m9la_          47 LKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEE
T ss_pred             ccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccccccc
Confidence            478999999999998 565 4888999999999999998 66765566778999999999998 444 477889999999


Q ss_pred             cccCcccCCcc--ccccCCCCCcEEeccCCcccccCC
Q 030065          142 LYNNSFTGPIP--NSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       142 L~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      +++|+++ .++  ..+..+++|+.|++++|.+....+
T Consensus       122 L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             ESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             cccchhc-cccccccccCCCccceeecCCCccccCcc
Confidence            9999998 555  357889999999999998875433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=5e-11  Score=85.71  Aligned_cols=109  Identities=30%  Similarity=0.295  Sum_probs=72.4

Q ss_pred             CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccc---------------
Q 030065           62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS---------------  126 (183)
Q Consensus        62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~---------------  126 (183)
                      .+++++|++++|.+++ +++ +..+++|++|++++|+++ .+| .+..+++|+.+++++|.+...               
T Consensus        67 l~~L~~L~L~~n~i~~-l~~-~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~  142 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG  142 (210)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred             CCCCCEEeCCCccccC-ccc-cccCcccccccccccccc-ccc-cccccccccccccccccccccccccccccccccccc
Confidence            3567777777777763 332 566777777777777776 344 355566666666666554310               


Q ss_pred             -----cCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065          127 -----IPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK  177 (183)
Q Consensus       127 -----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~  177 (183)
                           .+..+..+++|+++++++|.++ .++ .+.++++|+.|++++|+++ .+|.
T Consensus       143 ~n~l~~~~~~~~l~~L~~l~l~~n~l~-~i~-~l~~l~~L~~L~Ls~N~i~-~l~~  195 (210)
T d1h6ta2         143 NNKITDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRA  195 (210)
T ss_dssp             SSCCCCCGGGGGCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCC-BCGG
T ss_pred             ccccccccccccccccccccccccccc-ccc-cccCCCCCCEEECCCCCCC-CChh
Confidence                 1123455678888888888887 444 3778899999999999887 4553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=6.6e-11  Score=84.34  Aligned_cols=102  Identities=27%  Similarity=0.425  Sum_probs=78.6

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      .++++|++++++++ .++ .+..+++|++|++++|.+++ +++ +..+++|++|++++|.+. .++ .+..++.|+.|++
T Consensus        40 ~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccc-ccc-ccccccccccccc
Confidence            57899999999998 454 47889999999999999994 443 889999999999999887 444 3667777777777


Q ss_pred             ccCcccCCccccccCCCCCcEEeccCCccc
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      ++|.+.. + ..+..+++|+.|++++|++.
T Consensus       114 ~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~  141 (199)
T d2omxa2         114 FNNQITD-I-DPLKNLTNLNRLELSSNTIS  141 (199)
T ss_dssp             CSSCCCC-C-GGGTTCTTCSEEECCSSCCC
T ss_pred             ccccccc-c-cccchhhhhHHhhhhhhhhc
Confidence            7776663 2 23556677777777777665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=3.9e-11  Score=92.78  Aligned_cols=108  Identities=26%  Similarity=0.356  Sum_probs=72.5

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCC--------------------hhhhcCCCCCcEEEecccc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHL--------------------PNELGQLRRLRFIRFGFNK  122 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--------------------p~~~~~l~~L~~L~l~~n~  122 (183)
                      ++++.+++.+|.+++. ++ +..+++|++++++++.+++..                    ...+..+++++.+++++|+
T Consensus       241 ~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~  318 (384)
T d2omza2         241 TNLTDLDLANNQISNL-AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN  318 (384)
T ss_dssp             TTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred             cccchhccccCccCCC-Cc-ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCC
Confidence            4455555555555532 21 444555555555555544211                    1235667888888888888


Q ss_pred             cccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065          123 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT  176 (183)
Q Consensus       123 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip  176 (183)
                      +++. + .+..+++|++|++++|+++ .++ .+..+++|++|++++|++++.+|
T Consensus       319 l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         319 ISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             CCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh
Confidence            8853 3 3778889999999999988 455 57888999999999999987655

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=3.4e-11  Score=93.08  Aligned_cols=81  Identities=22%  Similarity=0.308  Sum_probs=70.3

Q ss_pred             CCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCc
Q 030065           83 LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLE  162 (183)
Q Consensus        83 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  162 (183)
                      +..+++++++++++|.+++. + .+..+++|++|++++|+++ .++ .+..+++|++|++++|++++ +++ +.++++|+
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~-l~~-l~~l~~L~  376 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISD-LTP-LANLTRIT  376 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCB-CGG-GTTCTTCS
T ss_pred             cchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCC-Chh-hccCCCCC
Confidence            56678999999999999954 4 3788999999999999998 455 58899999999999999995 443 88999999


Q ss_pred             EEeccCC
Q 030065          163 VFDAIYN  169 (183)
Q Consensus       163 ~L~l~~N  169 (183)
                      .|++++|
T Consensus       377 ~L~L~~N  383 (384)
T d2omza2         377 QLGLNDQ  383 (384)
T ss_dssp             EEECCCE
T ss_pred             EeeCCCC
Confidence            9999987

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.13  E-value=1.6e-10  Score=83.04  Aligned_cols=80  Identities=18%  Similarity=0.301  Sum_probs=67.5

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      ..++.|+++++.++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+++ .+| .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCC-Cch-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccc
Confidence            46899999999998 444 37889999999999999994 44 3688999999999999998 455 4788899999999


Q ss_pred             ccCccc
Q 030065          143 YNNSFT  148 (183)
Q Consensus       143 ~~n~l~  148 (183)
                      ++|.+.
T Consensus       120 ~~~~~~  125 (210)
T d1h6ta2         120 EHNGIS  125 (210)
T ss_dssp             TTSCCC
T ss_pred             cccccc
Confidence            988776

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.11  E-value=3.1e-10  Score=82.19  Aligned_cols=64  Identities=30%  Similarity=0.388  Sum_probs=48.8

Q ss_pred             hcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065          107 LGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       107 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~  174 (183)
                      +..+++|+.|++++|.+++ . ..+..+++|+.|++++|+++ .++ .+.++++|++|++++|++++.
T Consensus       147 ~~~~~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~Ls~n~l~-~l~-~l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSD-L-TPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             hcccccccccccccccccc-c-hhhcccccceecccCCCccC-CCh-hhcCCCCCCEEECcCCcCCCC
Confidence            3445667778877777763 2 23778899999999999988 455 378889999999999998854

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=2.9e-10  Score=82.40  Aligned_cols=98  Identities=22%  Similarity=0.272  Sum_probs=75.6

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      ..+..+.++++.+...  ..+...++|++|++++|.+... + .+..+++|+.|++++|+++ .++. +..+++|++|++
T Consensus       129 ~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~Ls~n~l~-~l~~-l~~l~~L~~L~L  202 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHL  202 (227)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEEC
T ss_pred             cchhhhhchhhhhchh--hhhccccccccccccccccccc-h-hhcccccceecccCCCccC-CChh-hcCCCCCCEEEC
Confidence            3444555555544421  2256678899999999998743 3 4889999999999999998 4543 788999999999


Q ss_pred             ccCcccCCccccccCCCCCcEEeccC
Q 030065          143 YNNSFTGPIPNSLLNLSKLEVFDAIY  168 (183)
Q Consensus       143 ~~n~l~~~~p~~~~~l~~L~~L~l~~  168 (183)
                      ++|+++ .++. +.++++|+.|++++
T Consensus       203 s~N~lt-~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         203 KNNQIS-DVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             TTSCCC-BCGG-GTTCTTCCEEEEEE
T ss_pred             cCCcCC-CCcc-cccCCCCCEEEeeC
Confidence            999999 5653 88999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.5e-10  Score=83.25  Aligned_cols=100  Identities=19%  Similarity=0.176  Sum_probs=72.6

Q ss_pred             CCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCCh-hhhcCCCCCcEEEe
Q 030065           49 PICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLP-NELGQLRRLRFIRF  118 (183)
Q Consensus        49 ~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l  118 (183)
                      +.|....+.|...         ..++++|++++|.++...+..|.++++|++|++++|.+...++ ..+..++.++++.+
T Consensus         6 C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1           6 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             EEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            3456666777531         1468889999998884334457888899999999998875443 35677888888887


Q ss_pred             c-ccccccccCccccCCCCCcEEEcccCccc
Q 030065          119 G-FNKLSGSIPTWIGVLSKLQTLRLYNNSFT  148 (183)
Q Consensus       119 ~-~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  148 (183)
                      . .|.+....+..+..+++|+++++++|.++
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccccchhhhc
Confidence            5 45676566677788888888888888776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.5e-10  Score=81.84  Aligned_cols=105  Identities=17%  Similarity=0.166  Sum_probs=86.7

Q ss_pred             EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccC-ccccCCCCCcEEEccc
Q 030065           66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP-TWIGVLSKLQTLRLYN  144 (183)
Q Consensus        66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~  144 (183)
                      +.+++++++++ .+|..+.  +++++|++++|.++...+..|.++++|++|++++|.+...++ ..|..++.++.+.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            47888999998 8887765  489999999999994444468899999999999999875554 4678899999999764


Q ss_pred             -CcccCCccccccCCCCCcEEeccCCcccc
Q 030065          145 -NSFTGPIPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       145 -n~l~~~~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                       |++....+..+..+++|+.+++++|.+..
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             cccccccccccccccccccccccchhhhcc
Confidence             67775556678899999999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.03  E-value=9.5e-13  Score=94.32  Aligned_cols=91  Identities=22%  Similarity=0.318  Sum_probs=77.8

Q ss_pred             cCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccC
Q 030065           78 TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLN  157 (183)
Q Consensus        78 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  157 (183)
                      .++..+..+++|++|++++|.|+ .++ .+..+++|++|++++|+++ .+|.....++.|+.|++++|.++ .++ .+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccc
Confidence            45566788999999999999999 565 5888999999999999998 67766666678999999999998 554 4778


Q ss_pred             CCCCcEEeccCCcccc
Q 030065          158 LSKLEVFDAIYNVIDG  173 (183)
Q Consensus       158 l~~L~~L~l~~N~l~g  173 (183)
                      +++|+.|++++|+++.
T Consensus       114 l~~L~~L~L~~N~i~~  129 (198)
T d1m9la_         114 LVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHHSSEEEESEEECCC
T ss_pred             cccccccccccchhcc
Confidence            8999999999999974

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.97  E-value=1.5e-09  Score=82.35  Aligned_cols=97  Identities=26%  Similarity=0.365  Sum_probs=76.9

Q ss_pred             cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065           64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  143 (183)
Q Consensus        64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  143 (183)
                      ++++|++++++++ .+|+.   +++|++|++++|+|+ .+|..   +.+|+.|++++|+++ .++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            5778999999998 67753   457899999999998 77764   457899999999887 55532   2468999999


Q ss_pred             cCcccCCccccccCCCCCcEEeccCCccccc
Q 030065          144 NNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT  174 (183)
Q Consensus       144 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~  174 (183)
                      +|.++ .+|. ++.+++|+.|++++|.+.+.
T Consensus       107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_         107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCCSCC
T ss_pred             ccccc-cccc-hhhhccceeecccccccccc
Confidence            99988 6774 67889999999999888744

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.5e-09  Score=85.01  Aligned_cols=111  Identities=17%  Similarity=0.181  Sum_probs=83.9

Q ss_pred             CcEEEEEccCCCCccc-CCccCCCCCCCcEEEecCccCCC----CChhhhcCCCCCcEEEecccccccc----cCcccc-
Q 030065           63 QRVTALNLSDMGLGGT-IPLHLGNLSFLVSLDVAHNNFHG----HLPNELGQLRRLRFIRFGFNKLSGS----IPTWIG-  132 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~-  132 (183)
                      .++++|+++++.+++. +..-+..+++++.|++++|.++.    .+...+...++|++|++++|.++..    +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4689999999999752 12334557889999999999873    2344567899999999999998632    222232 


Q ss_pred             CCCCCcEEEcccCcccCC----ccccccCCCCCcEEeccCCcccc
Q 030065          133 VLSKLQTLRLYNNSFTGP----IPNSLLNLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       133 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~g  173 (183)
                      ...+|++|+|++|+++..    ++..+..+++|+.|++++|.++.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            235799999999999742    45567789999999999998863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.45  E-value=1e-06  Score=66.23  Aligned_cols=99  Identities=28%  Similarity=0.324  Sum_probs=76.8

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  142 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  142 (183)
                      +++++|++++|.++ .+|..   +.+|+.|++++|.++ .++. +  .+.|++|++++|.++ .+|. ++.+++|++|++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccccccccc-cccc-hhhhccceeecc
Confidence            67899999999999 77865   357899999999998 5543 1  356999999999998 6775 578999999999


Q ss_pred             ccCcccCCccc-------------------cccCCCCCcEEeccCCccc
Q 030065          143 YNNSFTGPIPN-------------------SLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       143 ~~n~l~~~~p~-------------------~~~~l~~L~~L~l~~N~l~  172 (183)
                      ++|.+.. .|.                   .+..++.++.++++.|.+.
T Consensus       128 ~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         128 DNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccc-cccccccccchhhccccccccccccccccceeccccccccc
Confidence            9988773 222                   2345667788888887766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.41  E-value=3.5e-08  Score=75.31  Aligned_cols=111  Identities=20%  Similarity=0.139  Sum_probs=79.3

Q ss_pred             CcEEEEEccCCCCccc-----CCccCCCCCCCcEEEecCccCCCC----ChhhhcCCCCCcEEEecccccccccC----c
Q 030065           63 QRVTALNLSDMGLGGT-----IPLHLGNLSFLVSLDVAHNNFHGH----LPNELGQLRRLRFIRFGFNKLSGSIP----T  129 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p----~  129 (183)
                      ..++.|++++|.+...     +...+...++|+.|++++|.++..    +...+...++|++|++++|.+++...    .
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~  265 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  265 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence            5688999999887632     334466778899999999987632    33456678899999999999875422    2


Q ss_pred             cccC--CCCCcEEEcccCcccCC----cccccc-CCCCCcEEeccCCcccc
Q 030065          130 WIGV--LSKLQTLRLYNNSFTGP----IPNSLL-NLSKLEVFDAIYNVIDG  173 (183)
Q Consensus       130 ~~~~--l~~L~~L~L~~n~l~~~----~p~~~~-~l~~L~~L~l~~N~l~g  173 (183)
                      .+..  .+.|++|++++|.++..    +...+. +.++|++|++++|.++.
T Consensus       266 ~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            2322  36799999999988732    222332 57889999999999863

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3.2e-08  Score=67.95  Aligned_cols=86  Identities=21%  Similarity=0.181  Sum_probs=63.6

Q ss_pred             CCCCCCcEEEecCccCCCC--ChhhhcCCCCCcEEEecccccccccCc-cccCCCCCcEEEcccCcccCCccc-------
Q 030065           84 GNLSFLVSLDVAHNNFHGH--LPNELGQLRRLRFIRFGFNKLSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPN-------  153 (183)
Q Consensus        84 ~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~-------  153 (183)
                      ..+++|++|++++|+++..  ++..+..+++|+.|++++|+++ .+++ .......|+.|++++|.+......       
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            4578899999999999843  2345677899999999999998 4443 333456789999999999854432       


Q ss_pred             cccCCCCCcEEeccCCccc
Q 030065          154 SLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       154 ~~~~l~~L~~L~l~~N~l~  172 (183)
                      .+..+|+|+.||  +..+.
T Consensus       141 i~~~~P~L~~LD--g~~v~  157 (162)
T d1koha1         141 IRERFPKLLRLD--GHELP  157 (162)
T ss_dssp             HHTTSTTCCEET--TEECC
T ss_pred             HHHHCCCCCEEC--cCCCc
Confidence            256789999887  55543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.8e-07  Score=69.64  Aligned_cols=110  Identities=20%  Similarity=0.238  Sum_probs=54.4

Q ss_pred             CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCc-cCCCC-ChhhhcCCCCCcEEEeccc-cccc--------------
Q 030065           63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHN-NFHGH-LPNELGQLRRLRFIRFGFN-KLSG--------------  125 (183)
Q Consensus        63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~l~~n-~l~~--------------  125 (183)
                      +++++|+++++.+.+..+..+..+++|++|+++++ .++.. +..-...+++|++|+++++ .++.              
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            45666666666665555555555666666666653 33311 1111123444444444432 1210              


Q ss_pred             --------------c-cCccccCCCCCcEEEcccC-cccCCccccccCCCCCcEEeccCC-ccc
Q 030065          126 --------------S-IPTWIGVLSKLQTLRLYNN-SFTGPIPNSLLNLSKLEVFDAIYN-VID  172 (183)
Q Consensus       126 --------------~-~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~N-~l~  172 (183)
                                    . +......+++|++|++++| .+++.....+.++++|++|++++| .++
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             chhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence                          0 0011123566777777664 355445555666666777777663 444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=3.1e-08  Score=68.00  Aligned_cols=89  Identities=17%  Similarity=0.071  Sum_probs=62.4

Q ss_pred             CCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccc--cCccccCCCCCcEEEcccCcccCCccc-cccCCCCCc
Q 030065           86 LSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS--IPTWIGVLSKLQTLRLYNNSFTGPIPN-SLLNLSKLE  162 (183)
Q Consensus        86 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~  162 (183)
                      +..+..+....+... .++.....+++|++|++++|+++..  ++..+..+++|+.|++++|.++ .++. ......+|+
T Consensus        41 ~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~  118 (162)
T d1koha1          41 QNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLE  118 (162)
T ss_dssp             TTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCS
T ss_pred             ccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccc
Confidence            333444444444433 3444445689999999999999843  2344667899999999999999 5554 233456799


Q ss_pred             EEeccCCcccccCC
Q 030065          163 VFDAIYNVIDGTTT  176 (183)
Q Consensus       163 ~L~l~~N~l~g~ip  176 (183)
                      .+++++|.++....
T Consensus       119 ~L~L~~Npl~~~~~  132 (162)
T d1koha1         119 ELWLDGNSLSDTFR  132 (162)
T ss_dssp             SCCCTTSTTSSSSS
T ss_pred             eeecCCCCcCcCcc
Confidence            99999999986544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=6.7e-07  Score=66.49  Aligned_cols=107  Identities=16%  Similarity=0.128  Sum_probs=64.4

Q ss_pred             CcEEEEEccCC-CCccc-CCccCCC-CCCCcEEEecCc--cCCCC-ChhhhcCCCCCcEEEeccc-ccccccCccccCCC
Q 030065           63 QRVTALNLSDM-GLGGT-IPLHLGN-LSFLVSLDVAHN--NFHGH-LPNELGQLRRLRFIRFGFN-KLSGSIPTWIGVLS  135 (183)
Q Consensus        63 ~~l~~L~l~~~-~l~~~-~~~~l~~-l~~L~~L~l~~n--~l~~~-~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~  135 (183)
                      +++++|+++++ .++.. +...+.. .++|+.|++++.  .++.. +..-...+++|++|+++++ .+++.....+..++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence            56888888875 33321 1111222 346777777754  23321 2222345677888888765 46655666677777


Q ss_pred             CCcEEEcccC-cccCCccccccCCCCCcEEeccCC
Q 030065          136 KLQTLRLYNN-SFTGPIPNSLLNLSKLEVFDAIYN  169 (183)
Q Consensus       136 ~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~N  169 (183)
                      +|++|+++++ .++..-...+.++++|+.|+++++
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            8888888774 566444455667777888877765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.17  E-value=1.9e-07  Score=71.04  Aligned_cols=109  Identities=13%  Similarity=0.183  Sum_probs=68.8

Q ss_pred             cEEEEEccCCCCcc----cCCccCCCCCCCcEEEecCccCCCC-----ChhhhcCCCCCcEEEecccccccc----cCcc
Q 030065           64 RVTALNLSDMGLGG----TIPLHLGNLSFLVSLDVAHNNFHGH-----LPNELGQLRRLRFIRFGFNKLSGS----IPTW  130 (183)
Q Consensus        64 ~l~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~  130 (183)
                      .++.+.++++.+..    .+...+...++|+.+++++|.+...     +...+...++|+.|++++|.++..    +...
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~  238 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  238 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             ccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc
Confidence            45555555555442    1222234466788888888887632     223355678888888888887632    3345


Q ss_pred             ccCCCCCcEEEcccCcccCC----cccccc--CCCCCcEEeccCCccc
Q 030065          131 IGVLSKLQTLRLYNNSFTGP----IPNSLL--NLSKLEVFDAIYNVID  172 (183)
Q Consensus       131 ~~~l~~L~~L~L~~n~l~~~----~p~~~~--~l~~L~~L~l~~N~l~  172 (183)
                      +...++|++|+|++|.+++.    +-..+.  ..+.|+.|++++|+++
T Consensus       239 l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             ccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            66778888888888888742    112222  2356888888888875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.7e-07  Score=71.85  Aligned_cols=86  Identities=24%  Similarity=0.220  Sum_probs=46.0

Q ss_pred             CCCcEEEecCccCCCCChhh----hcCCCCCcEEEecccccccc----cCcccc-CCCCCcEEEcccCcccC----Cccc
Q 030065           87 SFLVSLDVAHNNFHGHLPNE----LGQLRRLRFIRFGFNKLSGS----IPTWIG-VLSKLQTLRLYNNSFTG----PIPN  153 (183)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~~~----~p~~~~-~l~~L~~L~L~~n~l~~----~~p~  153 (183)
                      ..|+.++++++.++......    +...++|++|++++|++++.    ++..+. ..+.|++|+|++|.++.    .++.
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            35666666666555332222    22345667777776666532    222222 34556677777776652    1233


Q ss_pred             cccCCCCCcEEeccCCccc
Q 030065          154 SLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       154 ~~~~l~~L~~L~l~~N~l~  172 (183)
                      .+...++|++|++++|+++
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCC
T ss_pred             HHhcCCCCCEEECCCCcCC
Confidence            3445566777777776665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.81  E-value=6.1e-06  Score=56.38  Aligned_cols=110  Identities=11%  Similarity=0.093  Sum_probs=78.1

Q ss_pred             CCcEEEEEccCC-CCccc----CCccCCCCCCCcEEEecCccCCCC----ChhhhcCCCCCcEEEeccccccccc----C
Q 030065           62 HQRVTALNLSDM-GLGGT----IPLHLGNLSFLVSLDVAHNNFHGH----LPNELGQLRRLRFIRFGFNKLSGSI----P  128 (183)
Q Consensus        62 ~~~l~~L~l~~~-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~----p  128 (183)
                      .+.++.|+++++ .++..    +-..+...++|+.|++++|.+...    +...+...+.|+.|++++|.++...    -
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            367999999874 45532    333466677899999999988632    2234556789999999999987432    2


Q ss_pred             ccccCCCCCcEEEcccCcccC-------CccccccCCCCCcEEeccCCcc
Q 030065          129 TWIGVLSKLQTLRLYNNSFTG-------PIPNSLLNLSKLEVFDAIYNVI  171 (183)
Q Consensus       129 ~~~~~l~~L~~L~L~~n~l~~-------~~p~~~~~l~~L~~L~l~~N~l  171 (183)
                      ..+...++|++|++++|.+..       .+...+..-++|+.|+++.+..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            346677889999999887652       1233455678899999987654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.47  E-value=4.1e-05  Score=52.06  Aligned_cols=88  Identities=15%  Similarity=0.092  Sum_probs=64.4

Q ss_pred             CCCCCcEEEecCc-cCCCC----ChhhhcCCCCCcEEEeccccccccc----CccccCCCCCcEEEcccCcccCC----c
Q 030065           85 NLSFLVSLDVAHN-NFHGH----LPNELGQLRRLRFIRFGFNKLSGSI----PTWIGVLSKLQTLRLYNNSFTGP----I  151 (183)
Q Consensus        85 ~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~----~  151 (183)
                      +.++|+.|+++++ .++..    +-..+...+.|++|++++|.++...    ...+...+.|+.|+|++|.++..    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3568999999974 46522    2234667789999999999997432    23455678999999999999842    2


Q ss_pred             cccccCCCCCcEEeccCCccc
Q 030065          152 PNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       152 p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      -..+..-++|+.|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence            234667788999999998654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.97  E-value=6.4e-05  Score=50.88  Aligned_cols=111  Identities=16%  Similarity=0.188  Sum_probs=77.2

Q ss_pred             CCcEEEEEccC-CCCcc----cCCccCCCCCCCcEEEecCccCCCCCh----hhhcCCCCCcEEEecccccccc----cC
Q 030065           62 HQRVTALNLSD-MGLGG----TIPLHLGNLSFLVSLDVAHNNFHGHLP----NELGQLRRLRFIRFGFNKLSGS----IP  128 (183)
Q Consensus        62 ~~~l~~L~l~~-~~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~----~p  128 (183)
                      .+.+++|++++ +.++.    .+-..+...++|+.|++++|.++...-    ..+...+.++.+++.+|.++..    +.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            46789999987 45643    233445678899999999998874322    2345578999999999988643    22


Q ss_pred             ccccCCCCCcEEEcc--cCcccC----CccccccCCCCCcEEeccCCccc
Q 030065          129 TWIGVLSKLQTLRLY--NNSFTG----PIPNSLLNLSKLEVFDAIYNVID  172 (183)
Q Consensus       129 ~~~~~l~~L~~L~L~--~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~  172 (183)
                      ..+...++|+.++|+  .|.+..    .+...+...++|+.|+++.+...
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            456677889876664  566652    23344567889999999887643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.70  E-value=0.003  Score=42.22  Aligned_cols=89  Identities=12%  Similarity=0.104  Sum_probs=62.3

Q ss_pred             CCCCCCcEEEecC-ccCCCC----ChhhhcCCCCCcEEEeccccccccc----CccccCCCCCcEEEcccCcccCC----
Q 030065           84 GNLSFLVSLDVAH-NNFHGH----LPNELGQLRRLRFIRFGFNKLSGSI----PTWIGVLSKLQTLRLYNNSFTGP----  150 (183)
Q Consensus        84 ~~l~~L~~L~l~~-n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~----  150 (183)
                      .+.++|++|++++ +.++..    +-..+...++|++|++++|.++...    -..+...+.++.+++++|.++..    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4567899999997 456522    2234567899999999999987432    23455678999999999988632    


Q ss_pred             ccccccCCCCCcEEec--cCCccc
Q 030065          151 IPNSLLNLSKLEVFDA--IYNVID  172 (183)
Q Consensus       151 ~p~~~~~l~~L~~L~l--~~N~l~  172 (183)
                      +-..+...++|+.+++  +.|.+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHhCccccEEeeccCCCcCc
Confidence            2244567788887666  456654