Citrus Sinensis ID: 030068

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQAEDELGLPSVPQASIRG
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcHccccccHcccccccccHHHcccccccccccccccccccccHccccccccHccccc
Coil and Loop (DISEMBL)
MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETlgrsynvpddidedelMGELDALeadmgmedeagvpsylqpdkepdldaelnlptapsghasaqhdrpqaedelglpsvpqasirg
Flexible Loop (DISEMBL)
mrpgpaqeaIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPqaedelglpsvpqasirg
Low Complexity Region (SEG)
MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQAEDELGLPSVPQASIRG
Disordered region (IsUnstruct)
***********************YEGQRDMLYNQTFNLDQVAFASE*****************************************************************************************************************************************
Disordered Region (DISOPRED)
***************RVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGM***VKIQDIDNLQDEMMDLMDVSHEIQET*******PDDIDEDELMGELDALE**************************************************************
Disordered Region (DISEMBL)
*********IKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTA******************GLPSVPQASIRG
Disordered Region (DISPRO)
****PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYL*P*KEPDLDAELNLPT*****************ELG***V*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGxxxxxxxxxxxxxxxxxxxxxMKTVKIQDxxxxxxxxxxxxxxxxxxxxxLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQAEDELGLPSVPQASIRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q54JK4	215	Charged multivesicular bo	yes	no	0.775	0.660	0.486	5e-34
Q4QQV8	219	Charged multivesicular bo	yes	no	0.901	0.753	0.438	3e-29
Q9D7S9	219	Charged multivesicular bo	yes	no	0.901	0.753	0.438	3e-29
Q9VVI9	226	Charged multivesicular bo	yes	no	0.912	0.738	0.387	4e-29
Q5RBR3	219	Charged multivesicular bo	yes	no	0.901	0.753	0.432	1e-28
Q9NZZ3	219	Charged multivesicular bo	yes	no	0.901	0.753	0.432	1e-28
Q7T339	220	Charged multivesicular bo	no	no	0.885	0.736	0.428	2e-26
Q5FW29	219	Charged multivesicular bo	yes	no	0.901	0.753	0.426	3e-26
Q6DD52	219	Charged multivesicular bo	N/A	no	0.901	0.753	0.421	1e-25
O74422	210	Uncharacterized protein C	yes	no	0.748	0.652	0.379	3e-17

>sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5 OS=Dictyostelium discoideum GN=chmp5 PE=3 SV=1

 Score =  144 bits (362), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 70/144 (48%), Positives = 104/144 (72%), Gaps = 2/144 (1%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQ AIK +A+RVL+QK+MYE QRD + + +FN++Q  FA+E ++D   T++A+K  
Sbjct: 52  RPGPAQNAIKQKAIRVLQQKKMYERQRDQMASTSFNMEQTKFATESMRDTITTVSAMKQG 111

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
            K++K  +K +KI+D+D++QDEM DL+D ++EIQE+LGR+Y  PD +DE EL  EL ++ 
Sbjct: 112 AKDMKTQLKHIKIEDVDDMQDEMQDLLDYNNEIQESLGRAYQTPDTLDESELEAELMSMG 171

Query: 122 ADMGMEDEAGVPSYLQPDKEPDLD 145
            +  +E EA +PSYL     P  D
Sbjct: 172 EE--LELEASMPSYLMTPSVPTTD 193

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.
Dictyostelium discoideum (taxid: 44689)

>sp|Q4QQV8|CHMP5_RAT Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 109/178 (61%), Gaps = 13/178 (7%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct: 52  MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             KE+K   K VKI  I++LQD++ D+M+ ++EIQE LGRSY  P ++DED+L  ELDAL
Sbjct: 112 GVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDAL 170

Query: 121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQA-EDELGLPSVP 177
             D  + DE    SY        LD   + P  P G  +   ++     DE GLP +P
Sbjct: 171 -GDELLADEDS--SY--------LDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIP 217

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Rattus norvegicus (taxid: 10116)

>sp|Q9D7S9|CHMP5_MOUSE Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=2 SV=1

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 109/178 (61%), Gaps = 13/178 (7%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct: 52  MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             KE+K   K VKI  I++LQD++ D+M+ ++EIQE LGRSY  P ++DED+L  ELDAL
Sbjct: 112 GVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDAL 170

Query: 121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQA-EDELGLPSVP 177
             D  + DE    SY        LD   + P  P G  +   ++     DE GLP +P
Sbjct: 171 -GDELLADEDS--SY--------LDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIP 217

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Mus musculus (taxid: 10090)

>sp|Q9VVI9|CHMP5_DROME Charged multivesicular body protein 5 OS=Drosophila melanogaster GN=CG6259 PE=1 SV=2

 Score =  127 bits (320), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 112/183 (61%), Gaps = 16/183 (8%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GPA+ ++K +A+RVLKQK+ YE Q + L NQ+FN++Q  +A++ +KD Q T+ A+K 
Sbjct: 52  MREGPAKNSVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLKDTQATVAAMKD 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             K++K   K + I  I+++QD+M D+ + + E+QE LGR+Y +P ++D+D+L  ELDAL
Sbjct: 112 GVKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALGRTYGMP-EVDDDDLQAELDAL 170

Query: 121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQAE----DELGLPSV 176
             ++ ++D+    SY        LD  +  P APS    A    P       DE GLP +
Sbjct: 171 GDEIALDDDT---SY--------LDDVVKAPEAPSREPGADSIVPGKSTIETDEFGLPKI 219

Query: 177 PQA 179
           P +
Sbjct: 220 PTS 222

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q5RBR3|CHMP5_PONAB Charged multivesicular body protein 5 OS=Pongo abelii GN=CHMP5 PE=2 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 13/178 (7%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct: 52  MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             KE+K   K VKI  I++LQD++ D+M+ ++EIQE L RSY  P ++DED+L  ELDAL
Sbjct: 112 GVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP-ELDEDDLEAELDAL 170

Query: 121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQA-EDELGLPSVP 177
             D  + DE    SY        LD   + P  P G  +   ++     DE GLP +P
Sbjct: 171 -GDELLADEDS--SY--------LDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIP 217

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Pongo abelii (taxid: 9601)

>sp|Q9NZZ3|CHMP5_HUMAN Charged multivesicular body protein 5 OS=Homo sapiens GN=CHMP5 PE=1 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 13/178 (7%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct: 52  MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             KE+K   K VKI  I++LQD++ D+M+ ++EIQE L RSY  P ++DED+L  ELDAL
Sbjct: 112 GVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP-ELDEDDLEAELDAL 170

Query: 121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQA-EDELGLPSVP 177
             D  + DE    SY        LD   + P  P G  +   ++     DE GLP +P
Sbjct: 171 -GDELLADEDS--SY--------LDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIP 217

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in HIV-1 p6- and p9-dependent virus release.

Homo sapiens (taxid: 9606)

>sp|Q7T339|CHMP5_DANRE Charged multivesicular body protein 5 OS=Danio rerio GN=chmp5 PE=2 SV=1

 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 105/182 (57%), Gaps = 20/182 (10%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GP++  +K +AMRVLKQKRMYEGQRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct: 52  MRDGPSKNMVKQKAMRVLKQKRMYEGQRDQLMQQSFNMEQANYTIQTLKDTKTTVEAMKI 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             KE+K   K VKI  I++LQD++ D+M+ ++E+QE L RSY  P +IDED+L  ELDAL
Sbjct: 112 GAKEMKKAYKNVKIDQIEDLQDQLEDMMEDANEVQEALSRSYGTP-EIDEDDLEAELDAL 170

Query: 121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQAE-----DELGLPS 175
                        SY        LD   + P  P G   A  DR         DE GLP 
Sbjct: 171 GD---ELLLDDDNSY--------LDEASSAPAIPEG---APGDRTTNRDGVLVDEFGLPQ 216

Query: 176 VP 177
           +P
Sbjct: 217 IP 218

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

>sp|Q5FW29|CHMP5_XENTR Charged multivesicular body protein 5 OS=Xenopus tropicalis GN=chmp5 PE=2 SV=1

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 111/178 (62%), Gaps = 13/178 (7%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GP++  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +A + +KD + T+ A+K 
Sbjct: 52  MREGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTKTTVDAMKV 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             KE+K   K VKI  I++LQD++ D+M+ ++EIQE L RSY  P +IDED+L  ELDAL
Sbjct: 112 GAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYGTP-EIDEDDLEAELDAL 170

Query: 121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQA-EDELGLPSVP 177
             ++ ++D+    SY        LD   + P  P G  +   ++     DE GLP +P
Sbjct: 171 GDELLLDDDT---SY--------LDEAASAPAIPEGVPNDSKNKDGVLVDEFGLPQIP 217

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus tropicalis (taxid: 8364)

>sp|Q6DD52|CHMP5_XENLA Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5 PE=2 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 110/178 (61%), Gaps = 13/178 (7%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GP++  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct: 52  MREGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKV 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             KE+K   K VKI  I++LQD++ D+M+ ++EIQE L RSY  P +IDED+L  ELDAL
Sbjct: 112 GAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYGTP-EIDEDDLEAELDAL 170

Query: 121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQA-EDELGLPSVP 177
             ++ ++D+    SY        LD   + P  P G  +   ++     DE GLP +P
Sbjct: 171 GDELLLDDDT---SY--------LDEAASAPAIPEGVPNDSKNKDGVLVDEFGLPQIP 217

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|O74422|YQ56_SCHPO Uncharacterized protein C162.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC162.06c PE=3 SV=1

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 8/145 (5%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGP Q A+K RAM VL+QK++YE Q   L  Q+FN++Q A  +E +K+   T+  ++  
Sbjct: 53  RPGPGQTALKQRAMNVLRQKKIYESQLQQLQQQSFNMEQAAMTTESLKNTMATVQTMQET 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL- 120
            ++LK   K V I+ I+ LQDE+ D MD + E+ E LG++     DI+ DE   + +   
Sbjct: 113 ARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEVLGQNMT---DINVDEEELDAELEA 169

Query: 121 ----EADMGMEDEAGVPSYLQPDKE 141
                + +G +  A  PSYL P  E
Sbjct: 170 LQQESSWLGDQSTAEKPSYLMPSNE 194

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
255555154	237	Charged multivesicular body protein, put	0.994	0.767	0.875	1e-86
224113397	236	predicted protein [Populus trichocarpa]	0.994	0.771	0.875	7e-86
388500300	237	unknown [Lotus japonicus]	0.989	0.763	0.875	2e-85
449434524	237	PREDICTED: charged multivesicular body p	0.994	0.767	0.864	3e-85
224097586	236	predicted protein [Populus trichocarpa]	0.994	0.771	0.858	7e-85
30681419	235	charged multivesicular body protein 5 [A	0.994	0.774	0.836	1e-83
225440700	237	PREDICTED: charged multivesicular body p	0.978	0.755	0.844	2e-83
18414711	235	charged multivesicular body protein 5 [A	0.994	0.774	0.852	5e-83
21617889	235	unknown [Arabidopsis thaliana]	0.994	0.774	0.841	4e-82
255627689	250	unknown [Glycine max]	0.967	0.708	0.872	6e-82

>gi|255555154|ref|XP_002518614.1| Charged multivesicular body protein, putative [Ricinus communis] gi|223542213|gb|EEF43756.1| Charged multivesicular body protein, putative [Ricinus communis]

 Score =  324 bits (830), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 162/185 (87%), Positives = 175/185 (94%), Gaps = 3/185 (1%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTM+ALKSA
Sbjct: 53  RPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMSALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQDEMMDLMDVS+EIQETLGRSYN+PDDIDE+ELMGELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNIPDDIDEEELMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHAS--AQHDRPQAEDELGLPSVPQ 178
           ADMG+E E  GVPSYLQPDKEPDLD+ELNLP+AP+G A+  A  +  QAEDELGLP+VP+
Sbjct: 173 ADMGLEIEGDGVPSYLQPDKEPDLDSELNLPSAPTGQAAGPAGRNNAQAEDELGLPAVPR 232

Query: 179 ASIRG 183
           ASIRG
Sbjct: 233 ASIRG 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113397|ref|XP_002316482.1| predicted protein [Populus trichocarpa] gi|222865522|gb|EEF02653.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (823), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 161/184 (87%), Positives = 173/184 (94%), Gaps = 2/184 (1%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMR+LKQKRMYEGQRDMLYNQT+NLDQVAFASEGIKDAQQTM+ALKSA
Sbjct: 53  RPGPAQEAVKARAMRILKQKRMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMSALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQDEMMDLMDVS+EIQETLGRSYNVPDDIDE+ELMGELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGH-ASAQHDRPQAEDELGLPSVPQA 179
           ADMGME E+ GVPSYLQPDKE DLDAELNLP+AP+G  A A     QAEDELGLP+VP+A
Sbjct: 173 ADMGMETESDGVPSYLQPDKESDLDAELNLPSAPTGQGAPASRYNAQAEDELGLPAVPRA 232

Query: 180 SIRG 183
           S+RG
Sbjct: 233 SLRG 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500300|gb|AFK38216.1| unknown [Lotus japonicus]

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 161/184 (87%), Positives = 170/184 (92%), Gaps = 3/184 (1%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMRVLKQKRMYEGQRDMLYNQTFNLDQV FA+EGIKDAQQTMTALKSA
Sbjct: 53  RPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVQFAAEGIKDAQQTMTALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQDEMMDLMDVS+EIQETLGRSYNVPDDIDEDELMGELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEDELMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDR--PQAEDELGLPSVPQ 178
            DMG E EA GVPSYLQPDKEPDLDAELNLP+AP+G  +  H R   Q EDELGLP+VP+
Sbjct: 173 LDMGNETEADGVPSYLQPDKEPDLDAELNLPSAPTGQTADPHGRFNAQTEDELGLPAVPR 232

Query: 179 ASIR 182
           AS+R
Sbjct: 233 ASLR 236

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434524|ref|XP_004135046.1| PREDICTED: charged multivesicular body protein 5-like [Cucumis sativus] gi|449522013|ref|XP_004168023.1| PREDICTED: charged multivesicular body protein 5-like [Cucumis sativus]

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 160/185 (86%), Positives = 170/185 (91%), Gaps = 3/185 (1%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTM+ALKSA
Sbjct: 53  RPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMSALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTV+IQDIDNLQDEMMDLMDVS+EIQETLGRSYNVPDDIDEDEL+GELDALE
Sbjct: 113 NKELKGMMKTVRIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEDELLGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHAS--AQHDRPQAEDELGLPSVPQ 178
           ADMG E EA GVPSYLQPDKE D + ELNLP AP GHA+  A  +  QAEDELGLP+VP 
Sbjct: 173 ADMGFETEADGVPSYLQPDKESDFEGELNLPAAPIGHAAVPAGRNNAQAEDELGLPAVPH 232

Query: 179 ASIRG 183
           AS+RG
Sbjct: 233 ASLRG 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097586|ref|XP_002310998.1| predicted protein [Populus trichocarpa] gi|222850818|gb|EEE88365.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (814), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 158/184 (85%), Positives = 173/184 (94%), Gaps = 2/184 (1%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+K+RAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQT++ALKSA
Sbjct: 53  RPGPAQEAVKSRAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTVSALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQDEMMDLMDVS EIQETLGRSY+VPDDIDE++LMGELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSSEIQETLGRSYSVPDDIDEEDLMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHAS-AQHDRPQAEDELGLPSVPQA 179
           ADM ME E+ GVPSYLQPDKEPD D+ELNLP+AP+GHA+ A     QAEDELGLP+VP+A
Sbjct: 173 ADMAMETESDGVPSYLQPDKEPDFDSELNLPSAPTGHAAPAGRANNQAEDELGLPAVPRA 232

Query: 180 SIRG 183
           S+RG
Sbjct: 233 SLRG 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681419|ref|NP_187675.2| charged multivesicular body protein 5 [Arabidopsis thaliana] gi|8567798|gb|AAF76370.1| unknown protein [Arabidopsis thaliana] gi|29028830|gb|AAO64794.1| At3g10640 [Arabidopsis thaliana] gi|110736412|dbj|BAF00173.1| hypothetical protein [Arabidopsis thaliana] gi|332641416|gb|AEE74937.1| charged multivesicular body protein 5 [Arabidopsis thaliana]

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 153/183 (83%), Positives = 168/183 (91%), Gaps = 1/183 (0%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMRVLKQK+MYEGQRDMLYNQTFNLDQV+FA+EG+KDAQQTMTALKSA
Sbjct: 53  RPGPAQEAVKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQDEMMDLMDVS EIQE+LGRSYN+PD +DED+LMGELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSSEIQESLGRSYNIPDGLDEDDLMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQAEDELGLPSVPQAS 180
           ADMG E EA G+PSYLQPD E D D+ELNLP AP+GH  A H R QAEDE GLP+VP+AS
Sbjct: 173 ADMGNETEADGMPSYLQPDTETDYDSELNLPAAPTGHNGAPHGRAQAEDEFGLPAVPRAS 232

Query: 181 IRG 183
           +RG
Sbjct: 233 LRG 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440700|ref|XP_002280464.1| PREDICTED: charged multivesicular body protein 5 [Vitis vinifera] gi|297740204|emb|CBI30386.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/186 (84%), Positives = 174/186 (93%), Gaps = 7/186 (3%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMRVLKQKRMYEGQRDMLYNQTFNLDQV+FA+EGIKDAQQTMTALK+A
Sbjct: 53  RPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVSFAAEGIKDAQQTMTALKAA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKI+DID++QDEMMDLMDVS EIQE+LGRSYNVPDDIDED+LMGELDALE
Sbjct: 113 NKELKGMMKTVKIEDIDSMQDEMMDLMDVSSEIQESLGRSYNVPDDIDEDDLMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHA----SAQHDRPQAEDELGLPSV 176
           ADMGME E+ GVP+YLQPDKEPDLDAEL+LP+AP+GH     S Q+ RP  EDELGLPSV
Sbjct: 173 ADMGMETESTGVPAYLQPDKEPDLDAELSLPSAPTGHGAVPPSRQNARP--EDELGLPSV 230

Query: 177 PQASIR 182
           P+AS+R
Sbjct: 231 PRASLR 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414711|ref|NP_568143.1| charged multivesicular body protein 5 [Arabidopsis thaliana] gi|13877957|gb|AAK44056.1|AF370241_1 unknown protein [Arabidopsis thaliana] gi|9758460|dbj|BAB08989.1| unnamed protein product [Arabidopsis thaliana] gi|23296841|gb|AAN13183.1| unknown protein [Arabidopsis thaliana] gi|332003411|gb|AED90794.1| charged multivesicular body protein 5 [Arabidopsis thaliana]

 Score =  312 bits (799), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 156/183 (85%), Positives = 168/183 (91%), Gaps = 1/183 (0%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPA EAIKARAMRVLKQK+MYEGQRDMLYNQTFNLDQV+FA+EG+KDAQQTMTALKSA
Sbjct: 53  RPGPALEAIKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQD+MMDLMD S EIQETLGRSYNVPDDIDED+L+GELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDDMMDLMDESSEIQETLGRSYNVPDDIDEDDLLGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQAEDELGLPSVPQAS 180
           ADMG E EA GVPSYLQPDKEPDL+ ELNLP+AP GH  A   R QAEDE GLP+VP+AS
Sbjct: 173 ADMGNETEADGVPSYLQPDKEPDLNDELNLPSAPMGHTGAPPGRAQAEDEWGLPAVPRAS 232

Query: 181 IRG 183
           +RG
Sbjct: 233 LRG 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21617889|gb|AAM66939.1| unknown [Arabidopsis thaliana]

 Score =  309 bits (791), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 154/183 (84%), Positives = 167/183 (91%), Gaps = 1/183 (0%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPA EAIK RAMRVLKQK+MYEGQRDMLYNQTFNLDQV+FA+EG+KDAQQTMTALKSA
Sbjct: 53  RPGPALEAIKTRAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQD+MMDLMD S EIQETLGRSYNVPDDIDED+L+GELDAL+
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDDMMDLMDESSEIQETLGRSYNVPDDIDEDDLLGELDALK 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQAEDELGLPSVPQAS 180
           ADMG E EA GVPSYLQPDKEPDL+ ELNLP+AP GH  A   R QAEDE GLP+VP+AS
Sbjct: 173 ADMGNETEADGVPSYLQPDKEPDLNDELNLPSAPMGHTGAPPGRAQAEDEWGLPAVPRAS 232

Query: 181 IRG 183
           +RG
Sbjct: 233 LRG 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255627689|gb|ACU14189.1| unknown [Glycine max]

 Score =  308 bits (789), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 157/180 (87%), Positives = 164/180 (91%), Gaps = 3/180 (1%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMRVLKQKRMYEGQRDMLYNQTFNLDQV FA+EGIKDAQQTMTALKSA
Sbjct: 53  RPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVQFAAEGIKDAQQTMTALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQDEMMDLMDVS+EIQETLGRSYNVPDDIDED+LMGELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEDDLMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRP--QAEDELGLPSVPQ 178
            DMG E EA GVPSYLQPDKEPDLDAELNLP AP+G  +    R   Q EDELGLP+VPQ
Sbjct: 173 LDMGNETEADGVPSYLQPDKEPDLDAELNLPPAPTGQTAVPPGRSNAQTEDELGLPAVPQ 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2075800	235	VPS60.1 [Arabidopsis thaliana	0.994	0.774	0.836	8.7e-79
DICTYBASE|DDB_G0287993	215	vps60 "SNF7 family protein" [D	0.775	0.660	0.486	3.6e-34
ZFIN|ZDB-GENE-040426-1374	220	chmp5b "charged multivesicular	0.912	0.759	0.435	2.9e-32
ZFIN|ZDB-GENE-060503-60	251	chmp5a "charged multivesicular	0.901	0.657	0.424	4.7e-32
MGI|MGI:1924209	219	Chmp5 "charged multivesicular	0.901	0.753	0.432	6.9e-31
RGD|1305968	219	Chmp5 "charged multivesicular	0.901	0.753	0.432	6.9e-31
FB|FBgn0036740	226	CG6259 [Drosophila melanogaste	0.901	0.730	0.392	1.4e-30
UNIPROTKB|E1BSI4	219	CHMP5 "Uncharacterized protein	0.901	0.753	0.421	3e-30
UNIPROTKB|E2RLV2	219	CHMP5 "Uncharacterized protein	0.901	0.753	0.426	3e-30
UNIPROTKB|Q9NZZ3	219	CHMP5 "Charged multivesicular	0.901	0.753	0.426	3e-30

TAIR|locus:2075800 VPS60.1 [Arabidopsis thaliana (taxid:3702)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 153/183 (83%), Positives = 168/183 (91%)

Query:     2 RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
             RPGPAQEA+KARAMRVLKQK+MYEGQRDMLYNQTFNLDQV+FA+EG+KDAQQTMTALKSA
Sbjct:    53 RPGPAQEAVKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSA 112

Query:    62 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
             NKELKGMMKTVKIQDIDNLQDEMMDLMDVS EIQE+LGRSYN+PD +DED+LMGELDALE
Sbjct:   113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSSEIQESLGRSYNIPDGLDEDDLMGELDALE 172

Query:   122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQAEDELGLPSVPQAS 180
             ADMG E EA G+PSYLQPD E D D+ELNLP AP+GH  A H R QAEDE GLP+VP+AS
Sbjct:   173 ADMGNETEADGMPSYLQPDTETDYDSELNLPAAPTGHNGAPHGRAQAEDEFGLPAVPRAS 232

Query:   181 IRG 183
             +RG
Sbjct:   233 LRG 235

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

DICTYBASE|DDB_G0287993 vps60 "SNF7 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 70/144 (48%), Positives = 104/144 (72%)

Query:     2 RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
             RPGPAQ AIK +A+RVL+QK+MYE QRD + + +FN++Q  FA+E ++D   T++A+K  
Sbjct:    52 RPGPAQNAIKQKAIRVLQQKKMYERQRDQMASTSFNMEQTKFATESMRDTITTVSAMKQG 111

Query:    62 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
              K++K  +K +KI+D+D++QDEM DL+D ++EIQE+LGR+Y  PD +DE EL  EL ++ 
Sbjct:   112 AKDMKTQLKHIKIEDVDDMQDEMQDLLDYNNEIQESLGRAYQTPDTLDESELEAELMSMG 171

Query:   122 ADMGMEDEAGVPSYLQPDKEPDLD 145
              ++  E EA +PSYL     P  D
Sbjct:   172 EEL--ELEASMPSYLMTPSVPTTD 193

GO:0015031 "protein transport" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-1374 chmp5b "charged multivesicular body protein 5b" [Danio rerio (taxid:7955)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 77/177 (43%), Positives = 111/177 (62%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GP++  +K +AMRVLKQKRMYEGQRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct:    52 MRDGPSKNMVKQKAMRVLKQKRMYEGQRDQLMQQSFNMEQANYTIQTLKDTKTTVEAMKI 111

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
               KE+K   K VKI  I++LQD++ D+M+ ++E+QE L RSY  P+ IDED+L  ELDAL
Sbjct:   112 GAKEMKKAYKNVKIDQIEDLQDQLEDMMEDANEVQEALSRSYGTPE-IDEDDLEAELDAL 170

Query:   121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQAEDELGLPSVP 177
               ++ ++D+    SYL  D+     A   +P    G  +   D     DE GLP +P
Sbjct:   171 GDELLLDDDN---SYL--DEASSAPA---IPEGAPGDRTTNRDGVLV-DEFGLPQIP 218

GO:0015031 "protein transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

ZFIN|ZDB-GENE-060503-60 chmp5a "charged multivesicular body protein 5a" [Danio rerio (taxid:7955)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 76/179 (42%), Positives = 111/179 (62%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GP++  +K +AMRVLKQKRMYEGQRD L  Q+FN++Q  +  + ++D + T+ A+K 
Sbjct:    83 MRDGPSKNTVKQKAMRVLKQKRMYEGQRDQLSQQSFNMEQANYTIQSLRDTKTTVEAMKI 142

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
               KE+K   K VK+  I++LQD++ D+M+ ++E+QE L RSY  P+ IDEDEL  ELDAL
Sbjct:   143 GAKEMKKAYKQVKMDQIEDLQDQLEDMMEEANEVQEALSRSYGTPE-IDEDELEAELDAL 201

Query:   121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQAE--DELGLPSVP 177
               ++ ++D++   SYL        D   + P+ P G  S           DE GLP +P
Sbjct:   202 GDELLLDDDS---SYL--------DEASSAPSIPEGMPSDTKTNKDGVLVDEFGLPQIP 249

GO:0015031 "protein transport" evidence=IEA

MGI|MGI:1924209 Chmp5 "charged multivesicular body protein 5" [Mus musculus (taxid:10090)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 77/178 (43%), Positives = 110/178 (61%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct:    52 MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
               KE+K   K VKI  I++LQD++ D+M+ ++EIQE LGRSY  P+ +DED+L  ELDAL
Sbjct:   112 GVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTPE-LDEDDLEAELDAL 170

Query:   121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQA-EDELGLPSVP 177
               ++ + DE    SYL        D   + P  P G  +   ++     DE GLP +P
Sbjct:   171 GDEL-LADEDS--SYL--------DEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIP 217

GO:0001919 "regulation of receptor recycling" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007040 "lysosome organization" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1305968 Chmp5 "charged multivesicular body protein 5" [Rattus norvegicus (taxid:10116)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 77/178 (43%), Positives = 110/178 (61%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct:    52 MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
               KE+K   K VKI  I++LQD++ D+M+ ++EIQE LGRSY  P+ +DED+L  ELDAL
Sbjct:   112 GVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTPE-LDEDDLEAELDAL 170

Query:   121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQA-EDELGLPSVP 177
               ++ + DE    SYL        D   + P  P G  +   ++     DE GLP +P
Sbjct:   171 GDEL-LADEDS--SYL--------DEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIP 217

GO:0001919 "regulation of receptor recycling" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005829 "cytosol" evidence=IEA

GO:0007040 "lysosome organization" evidence=ISO

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0010008 "endosome membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

FB|FBgn0036740 CG6259 [Drosophila melanogaster (taxid:7227)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 71/181 (39%), Positives = 111/181 (61%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GPA+ ++K +A+RVLKQK+ YE Q + L NQ+FN++Q  +A++ +KD Q T+ A+K 
Sbjct:    52 MREGPAKNSVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLKDTQATVAAMKD 111

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
               K++K   K + I  I+++QD+M D+ + + E+QE LGR+Y +P+ +D+D+L  ELDAL
Sbjct:   112 GVKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALGRTYGMPE-VDDDDLQAELDAL 170

Query:   121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQAE----DELGLPSV 176
               ++ ++D+    SYL        D  +  P APS    A    P       DE GLP +
Sbjct:   171 GDEIALDDDT---SYL--------DDVVKAPEAPSREPGADSIVPGKSTIETDEFGLPKI 219

Query:   177 P 177
             P
Sbjct:   220 P 220

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E1BSI4 CHMP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 75/178 (42%), Positives = 108/178 (60%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct:    52 MREGPAKNTVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQALKDTKTTVDAMKL 111

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
               KE+K   K VKI  I+++QD++ D+M+ ++E+QE L RSY  P+ IDED+L  ELDAL
Sbjct:   112 GVKEMKKAYKQVKIDQIEDIQDQLEDMMEEANEVQEALSRSYGTPE-IDEDDLEAELDAL 170

Query:   121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGH-ASAQHDRPQAEDELGLPSVP 177
               ++ + DE    SYL        D   + P  P G     ++      DE GLP +P
Sbjct:   171 GDEL-LADEDN--SYL--------DEAASAPAIPEGTPVDTKNKDGVLVDEFGLPKIP 217

GO:0015031 "protein transport" evidence=IEA

GO:0001919 "regulation of receptor recycling" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

UNIPROTKB|E2RLV2 CHMP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 76/178 (42%), Positives = 109/178 (61%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct:    52 MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
               KE+K   K VKI  I++LQD++ D+M+ ++EIQE L RSY  P+ +DED+L  ELDAL
Sbjct:   112 GVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTPE-LDEDDLEAELDAL 170

Query:   121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQA-EDELGLPSVP 177
               ++ + DE    SYL        D   + P  P G  +   ++     DE GLP +P
Sbjct:   171 GDEL-LADEDS--SYL--------DEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIP 217

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001919 "regulation of receptor recycling" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q9NZZ3 CHMP5 "Charged multivesicular body protein 5" [Homo sapiens (taxid:9606)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 76/178 (42%), Positives = 109/178 (61%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct:    52 MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
               KE+K   K VKI  I++LQD++ D+M+ ++EIQE L RSY  P+ +DED+L  ELDAL
Sbjct:   112 GVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTPE-LDEDDLEAELDAL 170

Query:   121 EADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQA-EDELGLPSVP 177
               ++ + DE    SYL        D   + P  P G  +   ++     DE GLP +P
Sbjct:   171 GDEL-LADEDS--SYL--------DEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIP 217

GO:0015031 "protein transport" evidence=IEA

GO:0001919 "regulation of receptor recycling" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
PTZ00464	211	PTZ00464, PTZ00464, SNF-7-like protein; Provisiona	6e-45
pfam03357	169	pfam03357, Snf7, Snf7	2e-34
PTZ00446	191	PTZ00446, PTZ00446, vacuolar sorting protein SNF7-	2e-04

>gnl|CDD|240425 PTZ00464, PTZ00464, SNF-7-like protein; Provisional

 Score =  147 bits (372), Expect = 6e-45
 Identities = 63/128 (49%), Positives = 91/128 (71%)

Query: 3   PGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSAN 62
            G  Q   K RAM++L+QKRMY+ Q+DM+  Q FN+DQ+ F +E +KD +  + A+K A 
Sbjct: 52  RGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAA 111

Query: 63  KELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEA 122
           K LK   K + +  +++LQDE+ DL + + EIQE +GR+Y+VPDDIDEDE++GELDAL+ 
Sbjct: 112 KTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDF 171

Query: 123 DMGMEDEA 130
           DM  E +A
Sbjct: 172 DMEKEADA 179

Length = 211

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score =  119 bits (300), Expect = 2e-34
 Identities = 52/125 (41%), Positives = 73/125 (58%)

Query: 11  KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK 70
           K  A+ +LKQK+ YE Q D L  Q  NL+QV  A E  K  Q+ + A+K   K +K M K
Sbjct: 40  KDAALILLKQKKRYEKQLDQLDGQLANLEQVRMAIENAKTNQEVLNAMKGGAKAMKAMNK 99

Query: 71  TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEA 130
            + I  ID+L DE+ D M+ + EI E L  + +  D+ DE+EL  ELDAL  ++G E+  
Sbjct: 100 NMDIDKIDDLMDEIEDQMEKADEISEMLSDTLDDADEEDEEELDAELDALLDEIGDEELV 159

Query: 131 GVPSY 135
            +PS 
Sbjct: 160 ELPSA 164

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|240422 PTZ00446, PTZ00446, vacuolar sorting protein SNF7-like; Provisional

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 17  VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQD 76
           +LK+K++YE + + + N    L+      E +   +  + AL  A    K +   +  Q 
Sbjct: 72  LLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQK 131

Query: 77  IDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           ++ + D + +  D+  EI + L  S+N+ +++D+DE+  ELD L+
Sbjct: 132 VEKIIDTIQENKDIQEEINQAL--SFNLLNNVDDDEIDKELDLLK 174

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PTZ00464	211	SNF-7-like protein; Provisional	100.0
KOG1655	218	consensus Protein involved in vacuolar protein sor	100.0
KOG1656	221	consensus Protein involved in glucose derepression	100.0
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	100.0
KOG2910	209	consensus Uncharacterized conserved protein predic	99.97
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.92
KOG2911	439	consensus Uncharacterized conserved protein [Funct	99.88
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	98.99
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	98.12
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	97.99
PTZ00464	211	SNF-7-like protein; Provisional	97.83
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	97.7
PRK10698	222	phage shock protein PspA; Provisional	96.59
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	96.59
KOG1655	218	consensus Protein involved in vacuolar protein sor	95.79
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	95.61
KOG1656	221	consensus Protein involved in glucose derepression	94.71
COG5491	204	VPS24 Conserved protein implicated in secretion [C	94.28
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	92.83
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	92.53
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	92.16
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	89.54
PF05852	146	DUF848: Gammaherpesvirus protein of unknown functi	86.29
KOG2910	209	consensus Uncharacterized conserved protein predic	82.64

>PTZ00464 SNF-7-like protein; Provisional

Probab=100.00  E-value=5.4e-37  Score=254.10  Aligned_cols=148  Identities=45%  Similarity=0.750  Sum_probs=130.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 030068            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM   84 (183)
Q Consensus         5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel   84 (183)
                      ++++++|++|+.|||+||+||++++++.++++||++++++|++++++++||+||+.|+++||++|++|++|+||++||+|
T Consensus        54 ~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei  133 (211)
T PTZ00464         54 MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDEL  133 (211)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            77788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 030068           85 MDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHA  158 (183)
Q Consensus        85 ~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e~~~~vps~l~~~~~~~~~~~~~lP~~P~~~~  158 (183)
                      +|++++++||+++|++++++++++||+||++||++|+.|+..+   .+|||++..+  .+|+ -.||.+|...+
T Consensus       134 ~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~~e---~~~~~l~~~~--~~p~-~~~~~~~~~~~  201 (211)
T PTZ00464        134 ADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDMEKE---ADASYLADAL--AVPG-TKLPDVPTDEK  201 (211)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhcc---ccchhhhccc--cCCC-CCCCCCCCccc
Confidence            9999999999999999987767899999999999999987543   3599986431  1222 24555554443

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-36  Score=244.65  Aligned_cols=164  Identities=55%  Similarity=0.838  Sum_probs=142.2

Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Q 030068            1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNL   80 (183)
Q Consensus         1 ~~~g~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~l   80 (183)
                      ||+||+++..|++|+++||+||+||+|.+.+++|.|||+|..+++++.++++.+|.|||.|++.||+.+++++||+|+++
T Consensus        52 ~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~Iedl  131 (218)
T KOG1655|consen   52 TRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDL  131 (218)
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhcc--ccc-cCCCCCCCCCCCCCccccCCCCCCCCCC
Q 030068           81 QDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGM--EDE-AGVPSYLQPDKEPDLDAELNLPTAPSGH  157 (183)
Q Consensus        81 mDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~--e~~-~~vps~l~~~~~~~~~~~~~lP~~P~~~  157 (183)
                      .|+|.+.++..+||+++|+++|++| ++|++||++||++|.+|...  +.. ...|||+.|+..|         .+|.  
T Consensus       132 QDem~Dlmd~a~EiQE~Lgr~y~~p-eide~dL~aELdaL~~E~d~~~~~~~~~~psyl~p~~~~---------~~~~--  199 (218)
T KOG1655|consen  132 QDEMEDLMDQADEIQEVLGRNYNTP-DIDEADLDAELDALGQELDMLEEDENYLMPSYLAPANEP---------PAFI--  199 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCC-CcCHHHHHHHHHHHHhHhhcccccccccchhhhCCCCCC---------CCCc--
Confidence            9999999999999999999999997 49999999999999887432  221 3478887655321         2221  


Q ss_pred             CCCCCCCCCcccccCCCCcc
Q 030068          158 ASAQHDRPQAEDELGLPSVP  177 (183)
Q Consensus       158 ~~~~~~~~~~~de~~lp~~~  177 (183)
                       ......+.++++||||..|
T Consensus       200 -de~~~~~~~~~~~g~p~~~  218 (218)
T KOG1655|consen  200 -DEENAEGAEVDEFGLPSGP  218 (218)
T ss_pred             -ccccCCCccccccCCCCCC
Confidence             1112345678999999875

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-34  Score=233.58  Aligned_cols=121  Identities=31%  Similarity=0.400  Sum_probs=116.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 030068            9 AIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLM   88 (183)
Q Consensus         9 ~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~   88 (183)
                      +||+.|+.||||||+||+||.++.+.+.+|+.++.+||+|+.|.+|+.+|+.|+++||++|+.||||+|+++||+|+|+.
T Consensus        58 kNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQq  137 (221)
T KOG1656|consen   58 KNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQ  137 (221)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccccc
Q 030068           89 DVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDE  129 (183)
Q Consensus        89 e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e~~  129 (183)
                      +.++||++|||+|++++.++|||||++||++|+++..+.+.
T Consensus       138 e~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~l  178 (221)
T KOG1656|consen  138 EVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKEL  178 (221)
T ss_pred             HHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988789999999999999998666554

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=100.00  E-value=6.6e-32  Score=220.34  Aligned_cols=120  Identities=23%  Similarity=0.359  Sum_probs=112.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 030068            6 AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMM   85 (183)
Q Consensus         6 ~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~   85 (183)
                      .++|+|++|++||||||+||++|+++.++++||++++++||++++|.+||.||++|+++||++|+.|++|+||++||+|+
T Consensus        61 ~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~  140 (191)
T PTZ00446         61 VEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQ  140 (191)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030068           86 DLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME  127 (183)
Q Consensus        86 E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e  127 (183)
                      |++++++||+++|++++.  +++||+||++||++|+++-.++
T Consensus       141 E~~e~~~EIseaLs~~~~--~~~DEdELe~ELe~Le~e~l~~  180 (191)
T PTZ00446        141 ENKDIQEEINQALSFNLL--NNVDDDEIDKELDLLKEQTMEE  180 (191)
T ss_pred             HHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999998643  4699999999999999875443

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=99.97  E-value=2.7e-30  Score=208.48  Aligned_cols=149  Identities=30%  Similarity=0.440  Sum_probs=134.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 030068            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM   84 (183)
Q Consensus         5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel   84 (183)
                      .+|.|.|.+|+++||+||++|..|.++++|+.|||+++.+||++...+.|+++|++||.+||++|+.|++|.|++|||+.
T Consensus        49 lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt  128 (209)
T KOG2910|consen   49 LIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDT  128 (209)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccc-cccCCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q 030068           85 MDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME-DEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQ  161 (183)
Q Consensus        85 ~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e-~~~~vps~l~~~~~~~~~~~~~lP~~P~~~~~~~  161 (183)
                      +|+++|++||+++|++.++.   .|+++|++||++|+.+...+ ..|+|||.-     |..|....+|.+|...|...
T Consensus       129 ~ea~~YQ~Ein~~L~~~ls~---~dEddi~~EldaLese~~~e~e~PevPs~e-----p~lPek~~~~~~~~k~~~~~  198 (209)
T KOG2910|consen  129 QEAIEYQDEINAILSGSLSA---EDEDDILAELDALESELEVEAELPEVPSTE-----PELPEKEDLEDVPEKEPAAS  198 (209)
T ss_pred             HHHHHHHHHHHHHHHhhccc---ccHHHHHHHHHHHHHHhhhhhhcCCCCCCC-----CCcccccccccccccccchh
Confidence            99999999999999998764   79999999999999987664 458888873     22334467888998877644

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.92  E-value=2.3e-25  Score=175.83  Aligned_cols=124  Identities=34%  Similarity=0.479  Sum_probs=98.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 030068            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM   84 (183)
Q Consensus         5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel   84 (183)
                      ..++|+|.+|+.|||++|.+++++.++.+++++|+++..+|+++..+..|+.+|+.|+++||++++.|++++|+++|++|
T Consensus        34 ~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~  113 (171)
T PF03357_consen   34 AIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKALKKINKQINLDKVEKLMDDF  113 (171)
T ss_dssp             HHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHHHHHHHHSTTSCCHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhcccc
Q 030068           85 MDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMED  128 (183)
Q Consensus        85 ~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e~  128 (183)
                      .+.++.+++|+++|++.++..+++|++||++||++|..|...+.
T Consensus       114 ~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~  157 (171)
T PF03357_consen  114 QEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEE  157 (171)
T ss_dssp             HHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS
T ss_pred             HHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999997743246899999999999999976543

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.88  E-value=9.9e-22  Score=175.11  Aligned_cols=122  Identities=21%  Similarity=0.320  Sum_probs=114.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHHHHH
Q 030068            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKT-VKIQDIDNLQDE   83 (183)
Q Consensus         5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~-~~id~Ve~lmDe   83 (183)
                      +.|.|.|+.|+++||+||+.|+.++++..++.||++++.+|.+|++|+.|+.||+.|+.+||.+.+. .+.|+|+++||+
T Consensus       266 ~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Lde  345 (439)
T KOG2911|consen  266 ALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDE  345 (439)
T ss_pred             HHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999999999999999999984 599999999999


Q ss_pred             HHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 030068           84 MMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGM  126 (183)
Q Consensus        84 l~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~  126 (183)
                      +.|.++.++||+++|+.+...+.+++|++||+||+.|+.+...
T Consensus       346 v~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D~~k  388 (439)
T KOG2911|consen  346 VNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLEADEKK  388 (439)
T ss_pred             HHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHHhcccc
Confidence            9999999999999999876555689999999999999987554

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=1.1e-08  Score=83.85  Aligned_cols=120  Identities=18%  Similarity=0.220  Sum_probs=98.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 030068            6 AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMM   85 (183)
Q Consensus         6 ~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~   85 (183)
                      +|+|+-..++..-|.--+...++.++++...+|+.+...|++.+.+..+..+|+.++++|..+|+.||+-.+.+||-+++
T Consensus        50 AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFe  129 (224)
T KOG3230|consen   50 AKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFE  129 (224)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence            34444333344444444455677889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030068           86 DLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME  127 (183)
Q Consensus        86 E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e  127 (183)
                      .+.+.++.-.++|+..++  +.++++|=|+|-++|...+++|
T Consensus       130 kQse~Mdm~~Emm~daID--dal~~~edEEEtd~lvnqVLDE  169 (224)
T KOG3230|consen  130 KQSEIMDMKEEMMDDAID--DALGDDEDEEETDDLVNQVLDE  169 (224)
T ss_pred             HHHHHHHHHHHHHHHHHH--HhhcccchhHHHHHHHHHHHHH
Confidence            999999999999988654  3455566678899999887776

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=0.00012  Score=60.69  Aligned_cols=131  Identities=17%  Similarity=0.182  Sum_probs=108.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 030068            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM   84 (183)
Q Consensus         5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel   84 (183)
                      ++|+|.+.-++.+-|.--...+...+++...-.|..+.+.+..+-....+...|+.++.+||.++.-+.+-.+-.+|-+|
T Consensus        51 aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrel  130 (227)
T KOG3229|consen   51 AAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMREL  130 (227)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            56778888888888888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHhcCCCCC-CC-CCCHHHHHHHHHHHHHhhccccccCCCCC
Q 030068           85 MDLMDVSHEIQETLGRSYNV-PD-DIDEDELMGELDALEADMGMEDEAGVPSY  135 (183)
Q Consensus        85 ~E~~e~~~EI~eaL~~~~~~-~~-~~DedELe~EL~~L~~E~~~e~~~~vps~  135 (183)
                      .-.+-+.--|.+++...+.. .+ +..+++.+.|.+.+.-++..+..+++|..
T Consensus       131 SkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~~~~~p~a  183 (227)
T KOG3229|consen  131 SKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEKAGEAPLA  183 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhccccccCCcc
Confidence            99999999999988865432 11 12455666777777777666655555543

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.00037  Score=56.20  Aligned_cols=95  Identities=9%  Similarity=0.057  Sum_probs=83.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 030068            6 AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMM   85 (183)
Q Consensus         6 ~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~   85 (183)
                      +..|++..++.+-|+--.+.+|-.++++....+..+..+-...+.+..+-.||-...+.|+.+|+.|+++++-..|-+++
T Consensus        49 Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ  128 (208)
T KOG3231|consen   49 AAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQ  128 (208)
T ss_pred             HHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            44678888888888888899999999999999999999988899999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHhcC
Q 030068           86 DLMDVSHEIQETLGR  100 (183)
Q Consensus        86 E~~e~~~EI~eaL~~  100 (183)
                      -....++--.++|..
T Consensus       129 ~anmKMemTeEMiND  143 (208)
T KOG3231|consen  129 KANMKMEMTEEMIND  143 (208)
T ss_pred             HHHHHhhhHHHHHHh
Confidence            888777665555554

>PTZ00464 SNF-7-like protein; Provisional

Probab=97.83  E-value=0.00052  Score=57.27  Aligned_cols=80  Identities=18%  Similarity=0.179  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hH---HHHHHHHHHHHHHHhHHHHHHHhcC
Q 030068           25 EGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVK-IQ---DIDNLQDEMMDLMDVSHEIQETLGR  100 (183)
Q Consensus        25 E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~-id---~Ve~lmDel~E~~e~~~EI~eaL~~  100 (183)
                      =+..-.+.+++.++..++++++......+....=.....+|+.-++.|. +-   +||++ |++.+.+..+-+.++=|+.
T Consensus        67 LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~V-d~l~Dei~E~~e~~~EI~e  145 (211)
T PTZ00464         67 LQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKV-EDLQDELADLYEDTQEIQE  145 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            3444456677777777777777777777777766667777776655442 11   12222 3444444444445555555


Q ss_pred             CCCCC
Q 030068          101 SYNVP  105 (183)
Q Consensus       101 ~~~~~  105 (183)
                      .++.+
T Consensus       146 ~Ls~~  150 (211)
T PTZ00464        146 IMGRA  150 (211)
T ss_pred             HHhCC
Confidence            55543

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=0.0086  Score=48.71  Aligned_cols=71  Identities=14%  Similarity=0.185  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhc
Q 030068           29 DMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLG   99 (183)
Q Consensus        29 ~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~   99 (183)
                      -++......+..+...++++-....|-..|..-.+.|-+..+.||+++|-.+||.++-+.++.+--...|.
T Consensus        66 ~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me  136 (203)
T KOG3232|consen   66 VNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVME  136 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            34455666778888899999999999999999999999999999999999999999999888776555543

>PRK10698 phage shock protein PspA; Provisional

Probab=96.59  E-value=0.096  Score=43.89  Aligned_cols=94  Identities=11%  Similarity=0.069  Sum_probs=67.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-
Q 030068            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNL-----------DQVAFASEGIKDAQQTMTALKSANKELKGMMKTV-   72 (183)
Q Consensus         5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nL-----------e~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~-   72 (183)
                      +..+|+-..|+.+|.+|+.|+.++..+..++...           ..+...|+.++.-+.++.+=..++++.++++..+ 
T Consensus        78 Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~  157 (222)
T PRK10698         78 ALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD  157 (222)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567889999999999999998877766665544           4455667788888999998888999988888764 


Q ss_pred             --ChHHHHHHHHHHHHHHHhHHHHHHHh
Q 030068           73 --KIQDIDNLQDEMMDLMDVSHEIQETL   98 (183)
Q Consensus        73 --~id~Ve~lmDel~E~~e~~~EI~eaL   98 (183)
                        +.+.--.-++.|.+-++..+--.+++
T Consensus       158 ~~~~~~a~~~f~rmE~ki~~~Ea~aea~  185 (222)
T PRK10698        158 SGKLDEAMARFESFERRIDQMEAEAESH  185 (222)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHhHh
Confidence              43333334455666555555555555

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=96.59  E-value=0.087  Score=43.44  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=81.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 030068            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLD-----------QVAFASEGIKDAQQTMTALKSANKELKGMMKT--   71 (183)
Q Consensus         5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe-----------~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~--   71 (183)
                      +.+.|+-..|..+|.+|+.|+.++..+..++.++.           .+...|...+.....+.+-....++-++++..  
T Consensus        77 Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~  156 (221)
T PF04012_consen   77 ALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALA  156 (221)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45678899999999999999999888777766544           44555666777788888888888888877653  


Q ss_pred             -CChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh
Q 030068           72 -VKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEAD  123 (183)
Q Consensus        72 -~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E  123 (183)
                       ++++.....++.|.+.++..+--.++.....+     +...++++|++++..
T Consensus       157 ~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~-----~~~~~e~~l~~~~~~  204 (221)
T PF04012_consen  157 SFSVSSAMDSFERMEEKIEEMEARAEASAELAD-----SDQDLEAELEELERD  204 (221)
T ss_pred             cCCccchHHHHHHHHHHHHHHHHHHHHHHHhcc-----CcccHHHHHHHhcCC
Confidence             56667777777777777766666666654321     222377788777653

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.79  E-value=0.43  Score=39.66  Aligned_cols=108  Identities=20%  Similarity=0.231  Sum_probs=75.0

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----ChHHHHHHHHHHHHHH
Q 030068           14 AMRVLKQKRM-YEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV----KIQDIDNLQDEMMDLM   88 (183)
Q Consensus        14 Al~~LkrKK~-~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~----~id~Ve~lmDel~E~~   88 (183)
                      |..+||+|-+ .=+|.-.+.+|..+|.++.+.++.++...+-++--.....+||.-++.|    .-=+|++| ++|++.|
T Consensus        57 aq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~I-edlQDem  135 (218)
T KOG1655|consen   57 AQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKI-EDLQDEM  135 (218)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH-HHHHHHH
Confidence            5566666654 3466777889999999999999999999999988888899999888765    33456665 4566666


Q ss_pred             HhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q 030068           89 DVSHEIQETLGRSYNVPDDIDEDELMGELDALEA  122 (183)
Q Consensus        89 e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~  122 (183)
                      ++.=+..+=|...++..-+.-|.+..+.+.+|..
T Consensus       136 ~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELda  169 (218)
T KOG1655|consen  136 EDLMDQADEIQEVLGRNYNTPDIDEADLDAELDA  169 (218)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHH
Confidence            6555555555555665445556554444444544

>TIGR02977 phageshock_pspA phage shock protein A

Probab=95.61  E-value=0.27  Score=40.89  Aligned_cols=94  Identities=9%  Similarity=0.038  Sum_probs=59.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 030068            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQ-----------VAFASEGIKDAQQTMTALKSANKELKGMMKT--   71 (183)
Q Consensus         5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~-----------~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~--   71 (183)
                      +.++|+-..|+.+|.+|+.++.++..+..++..+..           +...|+.++....++.+=...+.+-+.++..  
T Consensus        78 Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~  157 (219)
T TIGR02977        78 ALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLD  157 (219)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456788899999999999999998877776665543           4444555666666665555566666666543  


Q ss_pred             -CChHHHHHHHHHHHHHHHhHHHHHHHh
Q 030068           72 -VKIQDIDNLQDEMMDLMDVSHEIQETL   98 (183)
Q Consensus        72 -~~id~Ve~lmDel~E~~e~~~EI~eaL   98 (183)
                       ++.+.--..++.|.+-++..+--.+++
T Consensus       158 ~~~~~~a~~~fer~e~ki~~~ea~aea~  185 (219)
T TIGR02977       158 SGRSDEAMARFEQYERRVDELEAQAESY  185 (219)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence             455544455555555544444333343

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.71  E-value=0.98  Score=37.72  Aligned_cols=42  Identities=19%  Similarity=0.237  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068           24 YEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKEL   65 (183)
Q Consensus        24 ~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aL   65 (183)
                      +...+.++..|++.||....+.|.........+|||..-+.|
T Consensus        80 idG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~m  121 (221)
T KOG1656|consen   80 IDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNM  121 (221)
T ss_pred             HhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhcc
Confidence            334444444444444444444444444444444444443333

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=94.28  E-value=1.9  Score=35.93  Aligned_cols=75  Identities=8%  Similarity=0.064  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHhHHHHH
Q 030068           21 KRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVK-IQDIDNLQDEMMDLMDVSHEIQ   95 (183)
Q Consensus        21 KK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~-id~Ve~lmDel~E~~e~~~EI~   95 (183)
                      ++.+-+.+-++..+.+.|...+..+++.......--+|.....-+......|+ +..|..+++.+.-+....+-..
T Consensus        37 ~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~  112 (204)
T COG5491          37 RRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQ  112 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444456677777777777777777766666666666666666666666676 7778777776665554443333

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=92.83  E-value=0.32  Score=37.82  Aligned_cols=132  Identities=23%  Similarity=0.240  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH--H
Q 030068           10 IKARAMRVLKQK-----RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQ--D   82 (183)
Q Consensus        10 ~K~~Al~~LkrK-----K~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lm--D   82 (183)
                      .+.+|+.++++.     +.|=+.+-.+..++.++..+..+++......+.......-..+|+...+.|.  ++..-+  +
T Consensus        27 ~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~Lk--~~~~~i~~~  104 (171)
T PF03357_consen   27 LEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKALK--KINKQINLD  104 (171)
T ss_dssp             CHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHHHH--HHHHSTTSC
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhh
Confidence            456677777643     3566677788888899999999999999999988888888888887766542  333333  2


Q ss_pred             HHHHHHHhHHHHHHH---hcCCCCCCCCCC--HHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCccccCCCCCCCCCC
Q 030068           83 EMMDLMDVSHEIQET---LGRSYNVPDDID--EDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGH  157 (183)
Q Consensus        83 el~E~~e~~~EI~ea---L~~~~~~~~~~D--edELe~EL~~L~~E~~~e~~~~vps~l~~~~~~~~~~~~~lP~~P~~~  157 (183)
                      ++.+.++...+..+-   ++..++.  .++  .+.-++||++...++..+......    +        ...||++|+++
T Consensus       105 ~v~~~~d~~~e~~e~~~ei~~~l~~--~~~~~~~~dd~ele~eL~~l~~e~~~~~~----~--------~~~lp~~P~~~  170 (171)
T PF03357_consen  105 KVEKLMDDFQEEMEDQDEISEALSD--SMDQVDDVDDEELEEELEQLEDEIEEEEE----E--------KQQLPSVPSTE  170 (171)
T ss_dssp             CHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS--------------SS-SS---HH-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHc--cccCCCCCCHHHHHHHHHHHHHHHhhhhh----c--------cccCCcCCCCC
Confidence            444444333333333   3333332  232  456677888877777766532211    0        13799999864

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=92.53  E-value=2.2  Score=35.17  Aligned_cols=80  Identities=15%  Similarity=0.183  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH-HHHHHHHHHHHHhHHH
Q 030068           15 MRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDI-DNLQDEMMDLMDVSHE   93 (183)
Q Consensus        15 l~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~V-e~lmDel~E~~e~~~E   93 (183)
                      +.+=+..-.+..++.++..++++|+....+.+....-+...+|||..++-|. +   =+||++ +++.+.+..+.+.++-
T Consensus        77 K~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~-i---dkVd~lmDei~E~~e~~~EIsea  152 (191)
T PTZ00446         77 KLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEIN-T---QKVEKIIDTIQENKDIQEEINQA  152 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-H---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666677777777777777777777777777777777777776662 2   223333 3333444444555555


Q ss_pred             HHHHh
Q 030068           94 IQETL   98 (183)
Q Consensus        94 I~eaL   98 (183)
                      |+.-+
T Consensus       153 Ls~~~  157 (191)
T PTZ00446        153 LSFNL  157 (191)
T ss_pred             HcCCC
Confidence            55443

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.16  E-value=6.2  Score=32.95  Aligned_cols=118  Identities=17%  Similarity=0.329  Sum_probs=86.3

Q ss_pred             hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcc-CChHHHHHHHH
Q 030068            9 AIKARAMRVLKQKRMYEGQ---RDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKG--MMKT-VKIQDIDNLQD   82 (183)
Q Consensus         9 ~~K~~Al~~LkrKK~~E~~---l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~--~~k~-~~id~Ve~lmD   82 (183)
                      .-|-.|+.+.|-|.+..+.   ..++.+....++++..+-..++..+-+-+||..=|+.|.-  +.+- +.+++--.+||
T Consensus        57 A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Md  136 (224)
T KOG3230|consen   57 AVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMD  136 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHH
Confidence            3577899999888877664   4578888889999999999999999999999999987753  3343 37888889999


Q ss_pred             HHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccc---cccCCCC
Q 030068           83 EMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME---DEAGVPS  134 (183)
Q Consensus        83 el~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e---~~~~vps  134 (183)
                      --.|.+.  +-|+++|+.      +.||+|-++=-+...+|+.-.   +..+.|+
T Consensus       137 m~~Emm~--daIDdal~~------~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~  183 (224)
T KOG3230|consen  137 MKEEMMD--DAIDDALGD------DEDEEETDDLVNQVLDEIGVDLASQLSSLPS  183 (224)
T ss_pred             HHHHHHH--HHHHHhhcc------cchhHHHHHHHHHHHHHHcccHHHHhccCcc
Confidence            8887765  457777763      356666666666666665432   2345565

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=89.54  E-value=12  Score=31.62  Aligned_cols=114  Identities=14%  Similarity=0.093  Sum_probs=74.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---
Q 030068            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQ-----------VAFASEGIKDAQQTMTALKSANKELKGMMK---   70 (183)
Q Consensus         5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~-----------~~~~ie~a~~n~~vv~amk~g~~aLK~~~k---   70 (183)
                      +..+|+-.-|..+|-++..||+++..+..++.++..           +-..|...+..+.++.+=....++-+++++   
T Consensus        78 Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~  157 (225)
T COG1842          78 ALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLG  157 (225)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356778888999999999999988877666655443           334455666777777777777777666665   


Q ss_pred             cCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q 030068           71 TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEA  122 (183)
Q Consensus        71 ~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~  122 (183)
                      .++.+.--..++.|++-++..+.-.++.+.-. .   ...++|++||+.+..
T Consensus       158 ~~s~~sa~~~fer~e~kiee~ea~a~~~~el~-~---~~~~dl~~e~a~~~~  205 (225)
T COG1842         158 GGSSSSAMAAFERMEEKIEEREARAEAAAELA-E---GSGDDLDKEFAQAGA  205 (225)
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHhHHhh-c---cCcccHHHHHHHhcc
Confidence            45555555556666666666655555555310 0   123457778877765

>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae

Probab=86.29  E-value=15  Score=29.13  Aligned_cols=29  Identities=24%  Similarity=0.328  Sum_probs=19.5

Q ss_pred             cCChHHHHHHHHHHHHHHHhHHHHHHHhc
Q 030068           71 TVKIQDIDNLQDEMMDLMDVSHEIQETLG   99 (183)
Q Consensus        71 ~~~id~Ve~lmDel~E~~e~~~EI~eaL~   99 (183)
                      ...++.+|++.|.+.|..+.-+..-+.+.
T Consensus        85 ~~kv~~~E~L~d~v~eLkeel~~el~~l~  113 (146)
T PF05852_consen   85 RKKVEDLEKLTDRVEELKEELEFELERLQ  113 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34678888888888877665555555554

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=82.64  E-value=27  Score=29.08  Aligned_cols=16  Identities=25%  Similarity=0.426  Sum_probs=11.4

Q ss_pred             CCCCCCCCCCCCCCCC
Q 030068          148 LNLPTAPSGHASAQHD  163 (183)
Q Consensus       148 ~~lP~~P~~~~~~~~~  163 (183)
                      ..+|++|++.|..|.+
T Consensus       169 ~e~PevPs~ep~lPek  184 (209)
T KOG2910|consen  169 AELPEVPSTEPELPEK  184 (209)
T ss_pred             hhcCCCCCCCCCcccc
Confidence            3688999887765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	8e-08
3uly_B	69	Charged multivesicular BODY protein 5; beta-hairpi	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	3e-05

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens} Length = 104

 Score = 47.3 bits (112), Expect = 8e-08
 Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 72  VKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAG 131
           + I  +D L  ++ D  +++ EI   + +     ++ DEDELM EL+ LE +   ++   
Sbjct: 3   MDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLE 62

Query: 132 VPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQAEDE 170
           +               + LP  PS    ++  + + E++
Sbjct: 63  ISG----------PETVPLPNVPSIALPSKPAKKKEEED 91

>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B Length = 69

 Score = 44.6 bits (105), Expect = 4e-07
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 13/81 (16%)

Query: 100 RSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHAS 159
           RSY  P+ +DED+L  ELDAL  ++  +++    SY        LD   + P  P G  +
Sbjct: 1   RSYGTPE-LDEDDLEAELDALGDELLADED---SSY--------LDEAASAPAIPEGVPT 48

Query: 160 AQHDRPQAE-DELGLPSVPQA 179
              ++     DE GLP +P +
Sbjct: 49  DTKNKDGVLVDEFGLPQIPAS 69

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 36/159 (22%)

Query: 8   EAIKARAMRVLKQKRMYEGQRDMLYN--QTFNLDQVAFASEGIKDAQQTMTALKSANKEL 65
             IK    +     RMY  QRD LYN  Q F    V+          Q    L+ A  EL
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--------RLQPYLKLRQALLEL 147

Query: 66  K--------GMM---KTVKIQDIDNLQDEMMDLMDVSHEIQETL-GRSY--NVPDDIDED 111
           +        G++   KT     +D             +++Q  +  + +  N+ +    +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVA--LDVCLS---------YKVQCKMDFKIFWLNLKNCNSPE 196

Query: 112 ELMGELDALEADMGMEDEAGV-PSYLQPDKEPDLDAELN 149
            ++  L  L   +     +    S     +   + AEL 
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 2/131 (1%)

Query: 6   AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKEL 65
           A++  K   + + K+          LY    +++ V    +      +   +L+ + + +
Sbjct: 48  AKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVM 107

Query: 66  KGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDID--EDELMGELDALEAD 123
           K M   VKI +I     E+   M  +  I+E L  ++   DD +  E+E   E+D +  +
Sbjct: 108 KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFE 167

Query: 124 MGMEDEAGVPS 134
           +        PS
Sbjct: 168 ITAGALGKAPS 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	99.69
3uly_B	69	Charged multivesicular BODY protein 5; beta-hairpi	99.65
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	99.51
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	99.44
2lxm_B	57	Charged multivesicular BODY protein 5; MIT, protei	99.23
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	99.06
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	98.93
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	88.1

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=99.69  E-value=9.2e-17  Score=118.76  Aligned_cols=78  Identities=26%  Similarity=0.465  Sum_probs=63.3

Q ss_pred             ccCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCccccCC
Q 030068           70 KTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELN  149 (183)
Q Consensus        70 k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e~~~~vps~l~~~~~~~~~~~~~  149 (183)
                      ++|+||+|+++||+++|++++++||+++|+++++++.++|++||++||++|+++...+....++..   .       .+.
T Consensus         1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~---~-------~~~   70 (104)
T 3um3_B            1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGP---E-------TVP   70 (104)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCC---C-------CCC
Confidence            469999999999999999999999999999998777789999999999999998766554222211   0       135


Q ss_pred             CCCCCCCC
Q 030068          150 LPTAPSGH  157 (183)
Q Consensus       150 lP~~P~~~  157 (183)
                      ||+||++.
T Consensus        71 LP~vP~~~   78 (104)
T 3um3_B           71 LPNVPSIA   78 (104)
T ss_pred             CCCCCCCc
Confidence            78888765

>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B

Probab=99.65  E-value=1.7e-16  Score=108.44  Aligned_cols=68  Identities=37%  Similarity=0.667  Sum_probs=55.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC-CCCCcccccCCCCccc
Q 030068          100 RSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQH-DRPQAEDELGLPSVPQ  178 (183)
Q Consensus       100 ~~~~~~~~~DedELe~EL~~L~~E~~~e~~~~vps~l~~~~~~~~~~~~~lP~~P~~~~~~~~-~~~~~~de~~lp~~~~  178 (183)
                      |+|+++ ++||+||++||++|..|+..+.   +||||+++        ..+|.+|.+.|..+. ..++.+||||||+||+
T Consensus         1 rsy~~p-diDE~eL~aELdaL~~e~~~~~---~pSyL~~~--------~~~P~~p~~~p~~~~~~~~~~vDEfGLP~iPa   68 (69)
T 3uly_B            1 RSYGTP-ELDEDDLEAELDALGDELLADE---DSSYLDEA--------ASAPAIPEGVPTDTKNKDGVLVDEFGLPQIPA   68 (69)
T ss_pred             CCCCCC-CCCHHHHHHHHHHHHHHHhccc---Ccchhhcc--------ccCCCCCCCCCCccccCCCcccCccCcccCCC
Confidence            567887 7999999999999999986543   69999865        368899998886443 3578899999999998


Q ss_pred             c
Q 030068          179 A  179 (183)
Q Consensus       179 ~  179 (183)
                      +
T Consensus        69 ~   69 (69)
T 3uly_B           69 S   69 (69)
T ss_pred             C
Confidence            4

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=99.51  E-value=1.4e-15  Score=121.86  Aligned_cols=113  Identities=18%  Similarity=0.225  Sum_probs=83.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 030068            9 AIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLM   88 (183)
Q Consensus         9 ~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~   88 (183)
                      +.|-.|+.++|.||+    ..++.....+|+++.+.++++..+..|+.+|+.++++|+.+|+.|++++|..+|++|.+++
T Consensus        55 ~aki~Ak~lvr~rk~----~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~  130 (179)
T 2gd5_A           55 VCIVLAKEMIRSRKA----VSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEM  130 (179)
T ss_dssp             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            345578899999875    6778889999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030068           89 DVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME  127 (183)
Q Consensus        89 e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e  127 (183)
                      +++++|+++|+.+++.  ..|+++.++|.+++...+.+|
T Consensus       131 ~~~~~~~E~m~d~~~~--~~~~~~~eee~d~~v~kVl~E  167 (179)
T 2gd5_A          131 MKAGIIEEMLEDTFES--MDDQEEMEEEAEMEIDRILFE  167 (179)
T ss_dssp             HHHTSCC---------------------CTTHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhh--cccCCCcHHHHHHHHHHHHHH
Confidence            9999999999998753  234444556666666655544

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.4e-14  Score=96.02  Aligned_cols=53  Identities=42%  Similarity=0.661  Sum_probs=50.0

Q ss_pred             CChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCC--CCCCHHHHHHHHHHHHHhh
Q 030068           72 VKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVP--DDIDEDELMGELDALEADM  124 (183)
Q Consensus        72 ~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~--~~~DedELe~EL~~L~~E~  124 (183)
                      ||||+|++++|+|++.++.++||+++|||+|++|  +++|++||++||++|+.|-
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~   55 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQED   55 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhccc
Confidence            6899999999999999999999999999999998  4899999999999999874

>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}

Probab=99.23  E-value=6.2e-13  Score=87.77  Aligned_cols=57  Identities=42%  Similarity=0.711  Sum_probs=29.5

Q ss_pred             HHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCccccCCCCCCCCC
Q 030068           88 MDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSG  156 (183)
Q Consensus        88 ~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e~~~~vps~l~~~~~~~~~~~~~lP~~P~~  156 (183)
                      ++..+||+++|+++|+++ ++||+||++||++|++|...+   .+||||..+        +..|++|++
T Consensus         1 ~e~a~EIqealsr~~g~~-diDEdEL~aELe~LeqE~~~~---~~~syL~~~--------~~ap~~p~~   57 (57)
T 2lxm_B            1 MEDANEINEALSRSYGTP-ELDEDDLEAELDALGDELLAD---EDSSYLDEA--------ASAPAIPEG   57 (57)
T ss_dssp             ---------------CCC-CCCHHHHHHHHHHHHHHHHHC---SCCHHHHHH--------HHC------
T ss_pred             CchHHHHHHHHcCCCCCC-CCCHHHHHHHHHHHHHHHhhc---ccchHHHHh--------hhccCCCCC
Confidence            467899999999999987 899999999999999997544   469998644        357888863

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=99.06  E-value=9.3e-11  Score=96.80  Aligned_cols=131  Identities=18%  Similarity=0.202  Sum_probs=89.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 030068            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM   84 (183)
Q Consensus         5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel   84 (183)
                      ++++|++..|+.+-|.--...++..+++....+|..+.+.++++..+..+..+|+.++++|+.+|+.|++.+|..+|++|
T Consensus        47 aakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~ef  126 (218)
T 3frt_A           47 AAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMREL  126 (218)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46777777777777777777778889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHhcCCCCC--CCCCCHHHHHHHHHHHHHhhccccccCCCCC
Q 030068           85 MDLMDVSHEIQETLGRSYNV--PDDIDEDELMGELDALEADMGMEDEAGVPSY  135 (183)
Q Consensus        85 ~E~~e~~~EI~eaL~~~~~~--~~~~DedELe~EL~~L~~E~~~e~~~~vps~  135 (183)
                      ..+++..+-+.++|...++.  .++.+++|.+.|.+....|+.....+.+|+.
T Consensus       127 ekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~~l~~~p~~  179 (218)
T 3frt_A          127 SKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSK  179 (218)
T ss_dssp             HHHHHHHSCC----------------CTTSTTTHHHHHHHTC-----------
T ss_pred             HHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHhHhhcCCCC
Confidence            99999988888888876542  1223456677788888777765544555543

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=98.93  E-value=9.5e-10  Score=77.36  Aligned_cols=39  Identities=26%  Similarity=0.220  Sum_probs=36.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068            8 EAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASE   46 (183)
Q Consensus         8 ~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie   46 (183)
                      .++|++|+.||||||+||++|++++++++|||+++++||
T Consensus        41 ~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE   79 (79)
T 4abm_A           41 TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE   79 (79)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            456889999999999999999999999999999999985

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=88.10  E-value=0.097  Score=41.05  Aligned_cols=43  Identities=7%  Similarity=-0.090  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068           24 YEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELK   66 (183)
Q Consensus        24 ~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK   66 (183)
                      |=+++-+...+..+|-++..+|++.....++..++..-..+|+
T Consensus        59 ~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~  101 (179)
T 2gd5_A           59 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQ  101 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444555555555555555555444444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1ab4a_	493	DNA Gyrase A {Escherichia coli [TaxId: 562]}	80.45

>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA Gyrase A
species: Escherichia coli [TaxId: 562]

Probab=80.45  E-value=6.7  Score=33.04  Aligned_cols=51  Identities=22%  Similarity=0.279  Sum_probs=36.3

Q ss_pred             cCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 030068           71 TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGM  126 (183)
Q Consensus        71 ~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~  126 (183)
                      .+.-.+++++..+.++.....+++..+|+..-     .--+-+.+||+++.....+
T Consensus       436 ~LT~le~~kL~~E~~~l~~ei~eL~~iL~s~~-----~l~~~i~~EL~~lk~kfg~  486 (493)
T d1ab4a_         436 KLTGLEHEKLLDEYKELLDQIAELLRILGSAD-----RLMEVIREELELVREQFGD  486 (493)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHHhCC
Confidence            34556789999999988888888888887531     1223456788888877643