Citrus Sinensis ID: 030096

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQGPI
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHccccEEEccccccEEEEEcccccHHHHHHHHHHHHHHccccccEEEEcccEEEEccEEEEEEccccccEEcccccccccccccccHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccEEEEEccccEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccHEcccccccccccccccccccccccEEEEcccccEEEEccccccHHHHHHHHHHHHHHccccccEEEEcccEEccccEEEEEcccccccEEEccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccHHcccccEEEEEEccccEEEEEEccccccccccc
Coil and Loop (DISEMBL)
MSLRFRAKekeakanpddddeknqkKQRMVVDlgngseviyfpriikmEDSWKFFDYlnnripwnrptirvfgrsclqprdtcyvaseGVTQLIYsgyrphpyswddfpplkdILDIVLKvlpgsrfnSLLLNRYkggndyvgwhaddeklygstpeiasvsfgcerdfllkikpsksyqgpi
Flexible Loop (DISEMBL)
mslrfrakekeakanpddddeknqkkqrmvvdlgngseviyfprIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLlkikpsksyqgpi
Low Complexity Region (SEG)
MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQGPI
Disordered region (IsUnstruct)
*****************************VVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKI**********
Disordered Region (DISOPRED)
**********************************NGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFL*************
Disordered Region (DISEMBL)
*************************KQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP********
Disordered Region (DISPRO)
**************************QRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIK*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQGPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q58DM4	278	Alpha-ketoglutarate-depen	yes	no	0.573	0.377	0.385	2e-11
Q6P6J4	239	Alpha-ketoglutarate-depen	yes	no	0.579	0.443	0.390	3e-11
Q6NS38	261	Alpha-ketoglutarate-depen	yes	no	0.579	0.406	0.4	4e-11
Q32L00	286	Alpha-ketoglutarate-depen	no	no	0.721	0.461	0.326	5e-10
Q96Q83	286	Alpha-ketoglutarate-depen	no	no	0.743	0.475	0.308	7e-10
Q5XIC8	295	Alpha-ketoglutarate-depen	no	no	0.743	0.461	0.308	3e-09
Q8K1E6	286	Alpha-ketoglutarate-depen	no	no	0.743	0.475	0.302	1e-08

>sp|Q58DM4|ALKB2_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Bos taurus GN=ALKBH2 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 69  IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
           ++VFG+    PR        G+T   +SG    P  W   P L+ + D V  ++ G  FN
Sbjct: 98  VQVFGKWHSVPRKQATYGDTGLT-YTFSGLTLSPKPW--IPVLERVRDRV-SLVTGQTFN 153

Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
            +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+
Sbjct: 154 FVLINRYKDGQDHIGEHRDDERELALGSPIASVSFGACRDFVFRHKDSR 202

Dioxygenase that repairs alkylated DNA and RNA containing 1-methyladenine and 3-methylcytosine by oxidative demethylation. Can also repair alkylated DNA containing 1-ethenoadenine (in vitro). Has strong preference for double-stranded DNA. Has low efficiency with single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp|Q6P6J4|ALKB2_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Mus musculus GN=Alkbh2 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 59/110 (53%), Gaps = 4/110 (3%)

Query: 69  IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
           ++VFG+    PR        G+T   +SG    P  W   P L+ + D V +V  G  FN
Sbjct: 77  VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLTPKPW--VPVLERVRDRVCEVT-GQTFN 132

Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKS 178
            +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+ 
Sbjct: 133 FVLVNRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFIFRHKDSRG 182

Dioxygenase that repairs alkylated DNA and RNA containing 1-methyladenine and 3-methylcytosine by oxidative demethylation. Can also repair alkylated DNA containing 1-ethenoadenine. Has strong preference for double-stranded DNA. Has low efficiency with single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q6NS38|ALKB2_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Homo sapiens GN=ALKBH2 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 69  IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
           ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN
Sbjct: 99  VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT-GQTFN 154

Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKS 178
            +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+ 
Sbjct: 155 FVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRG 204

Dioxygenase that repairs alkylated DNA and RNA containing 1-methyladenine and 3-methylcytosine by oxidative demethylation. Can also repair alkylated DNA containing 1-ethenoadenine (in vitro). Has strong preference for double-stranded DNA. Has low efficiency with single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q32L00|ALKB3_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Bos taurus GN=ALKBH3 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 37  SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYS 96
           S V   P  + ++++   F+ L   +PW + T      +  QPR T +    G     YS
Sbjct: 88  SRVCLCPGFVDLKEADSVFEQLCRDVPWKQRTGIRDDVTYQQPRLTAWY---GELPYTYS 144

Query: 97  --GYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGS 154
                P+P+    + P+  +L   ++   G  FNSLL N Y+   D V WH+DDE   G 
Sbjct: 145 RITMEPNPH----WHPVLLMLKNQIEENTGHSFNSLLCNLYRNEKDSVDWHSDDEPSLGR 200

Query: 155 TPEIASVSFGCERDFLLKIKP 175
            P IAS+SFG  R F ++ KP
Sbjct: 201 CPIIASLSFGATRMFEMRKKP 221

Dioxygenase that repairs alkylated DNA containing 1-methyladenine (1meA) and 3-methylcytosine (3meC) by oxidative demethylation. Has a strong preference for single-stranded DNA. Able to process alkylated 3mC within double-stranded regions via its interaction with ASCC3, which promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3. May also act on RNA. Requires molecular oxygen, alpha-ketoglutarate and iron.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q96Q83|ALKB3_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Homo sapiens GN=ALKBH3 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 13/149 (8%)

Query: 37  SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYS 96
           S V  +P  + ++++    + L   +PW + T      +  QPR T +       +L Y+
Sbjct: 88  SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYG-----ELPYT 142

Query: 97  GYR----PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLY 152
             R    P+P+    + P+   L   ++   G  FNSLL N Y+   D V WH+DDE   
Sbjct: 143 YSRITMEPNPH----WHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSL 198

Query: 153 GSTPEIASVSFGCERDFLLKIKPSKSYQG 181
           G  P IAS+SFG  R F ++ KP     G
Sbjct: 199 GRCPIIASLSFGATRTFEMRKKPPPEENG 227

Dioxygenase that repairs alkylated DNA containing 1-methyladenine (1meA) and 3-methylcytosine (3meC) by oxidative demethylation. Has a strong preference for single-stranded DNA. Able to process alkylated 3mC within double-stranded regions via its interaction with ASCC3, which promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3. May also act on RNA. Requires molecular oxygen, alpha-ketoglutarate and iron.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q5XIC8|ALKB3_RAT Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Rattus norvegicus GN=Alkbh3 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 13/149 (8%)

Query: 37  SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYS 96
           S V  +P  + ++++    + L   +PW +        +  QPR T +       +L Y+
Sbjct: 88  SRVCLYPGFVDLKEADWILERLCQDVPWKQRMGIREDITYPQPRLTAWYG-----ELPYT 142

Query: 97  GYR----PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLY 152
             R    P+P+    + P+   L   ++   G  FNSLL N Y+   D V WH+DDE   
Sbjct: 143 YSRVTMEPNPH----WLPVLWTLKSRIEENTGHTFNSLLCNFYRDEKDSVDWHSDDEPSL 198

Query: 153 GSTPEIASVSFGCERDFLLKIKPSKSYQG 181
           GS P IAS+SFG  R F ++ KP     G
Sbjct: 199 GSCPVIASLSFGATRTFEMRKKPPPEENG 227

Dioxygenase that repairs alkylated DNA containing 1-methyladenine (1meA) and 3-methylcytosine (3meC) by oxidative demethylation. Has a strong preference for single-stranded DNA. Able to process alkylated 3mC within double-stranded regions via its interaction with ASCC3, which promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3. May also act on RNA. Requires molecular oxygen, alpha-ketoglutarate and iron.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8K1E6|ALKB3_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Mus musculus GN=Alkbh3 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 13/149 (8%)

Query: 37  SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYS 96
           S V  +P  + ++++    + L   +PW +        +  QPR T +       +L Y+
Sbjct: 88  SRVCLYPGFVDLKEADWILEQLCKDVPWKQRMGIREDVTYPQPRLTAWYG-----ELPYT 142

Query: 97  GYR----PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLY 152
             R    P+P+    + P+   L   ++      FNSLL N Y+   D V WH+DDE   
Sbjct: 143 YSRITMEPNPH----WLPVLWTLKSRIEENTSHTFNSLLCNFYRDEKDSVDWHSDDEPSL 198

Query: 153 GSTPEIASVSFGCERDFLLKIKPSKSYQG 181
           GS P IAS+SFG  R F ++ KP     G
Sbjct: 199 GSCPVIASLSFGATRTFEMRKKPPPEENG 227

Dioxygenase that repairs alkylated DNA containing 1-methyladenine (1meA) and 3-methylcytosine (3meC) by oxidative demethylation. Has a strong preference for single-stranded DNA. Able to process alkylated 3mC within double-stranded regions via its interaction with ASCC3, which promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3. May also act on RNA. Requires molecular oxygen, alpha-ketoglutarate and iron.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
147777784	244	hypothetical protein VITISV_030147 [Viti	0.978	0.733	0.672	1e-67
224089559	240	predicted protein [Populus trichocarpa]	0.901	0.687	0.710	4e-66
18399917	314	oxidoreductase, 2OG-Fe(II) oxygenase-lik	0.841	0.490	0.735	2e-64
297821443	307	oxidoreductase [Arabidopsis lyrata subsp	0.830	0.495	0.723	3e-64
87162794	256	2OG-Fe(II) oxygenase [Medicago truncatul	0.912	0.652	0.662	1e-63
357448069	248	Alpha-ketoglutarate-dependent dioxygenas	0.879	0.649	0.680	3e-63
356532818	236	PREDICTED: alpha-ketoglutarate-dependent	0.868	0.673	0.691	1e-62
449434054	244	PREDICTED: alpha-ketoglutarate-dependent	0.956	0.717	0.644	5e-62
218197985	254	hypothetical protein OsI_22576 [Oryza sa	0.972	0.700	0.590	2e-59
86361423	253	oxidoreductase-like protein [Oryza sativ	0.972	0.703	0.590	2e-59

>gi|147777784|emb|CAN75733.1| hypothetical protein VITISV_030147 [Vitis vinifera]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/180 (67%), Positives = 145/180 (80%), Gaps = 1/180 (0%)

Query: 1   MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNN 60
           M+ +F+A E ++     + +  N+  +R  +DLGNGS++IY PR +  E+SWK+FDYLN 
Sbjct: 1   MNFKFKA-ESKSTNPNPNPNPSNEGGKRQSIDLGNGSDLIYIPRFLAFEESWKWFDYLNK 59

Query: 61  RIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLK 120
            IPW RPTIRVFGRSC+QPRDTCYVAS G+ +L YSGY+PH Y+WDD+PPLKDIL  V K
Sbjct: 60  EIPWTRPTIRVFGRSCVQPRDTCYVASVGLPELSYSGYQPHAYTWDDYPPLKDILVXVHK 119

Query: 121 VLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQ 180
            LPGS FNSLLLNRYKGGNDYVGWH+DDEKLYGSTPEIAS+SFGCER+F LK KPSK  Q
Sbjct: 120 ALPGSSFNSLLLNRYKGGNDYVGWHSDDEKLYGSTPEIASISFGCEREFFLKKKPSKVSQ 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089559|ref|XP_002308756.1| predicted protein [Populus trichocarpa] gi|222854732|gb|EEE92279.1| predicted protein [Populus trichocarpa]

 Score =  255 bits (652), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 118/166 (71%), Positives = 139/166 (83%), Gaps = 1/166 (0%)

Query: 16  PDDDDEKNQK-KQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGR 74
           P++++ K +  + +  +DLGNGSEVIY  R I  E SW+FFDYLN  IPW RPTIRVFGR
Sbjct: 9   PENEEVKEESGRGKQSIDLGNGSEVIYIQRFIGFEKSWEFFDYLNKHIPWIRPTIRVFGR 68

Query: 75  SCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNR 134
            CLQPRDTCYVAS G+ +L+YSGY+PH  SWDDFPP+KD+LD+VL+ LPGS+FNSLLLN+
Sbjct: 69  QCLQPRDTCYVASPGLPELVYSGYKPHANSWDDFPPIKDLLDMVLEALPGSKFNSLLLNK 128

Query: 135 YKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQ 180
           YKGGND VGWHADDEKLYG TPEIASVSFGCER+FLLK +P KS Q
Sbjct: 129 YKGGNDNVGWHADDEKLYGPTPEIASVSFGCEREFLLKKRPMKSSQ 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399917|ref|NP_565530.1| oxidoreductase, 2OG-Fe(II) oxygenase-like protein [Arabidopsis thaliana] gi|20198150|gb|AAD23616.2| expressed protein [Arabidopsis thaliana] gi|330252192|gb|AEC07286.1| oxidoreductase, 2OG-Fe(II) oxygenase-like protein [Arabidopsis thaliana]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/155 (73%), Positives = 129/155 (83%), Gaps = 1/155 (0%)

Query: 28  RMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVAS 87
           R  +DLG+GS++IY  R +  + SW FFDYL+  IPW RPTIRVFGRSCLQPRDTCYVAS
Sbjct: 96  RKTIDLGHGSDLIYIQRFLPFQQSWTFFDYLDKHIPWTRPTIRVFGRSCLQPRDTCYVAS 155

Query: 88  EGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHAD 147
            G+T L+YSGYRP  YSWDDFPPLK+ILD + KVLPGSRFNSLLLNRYKG +DYV WHAD
Sbjct: 156 SGLTALVYSGYRPTSYSWDDFPPLKEILDAIYKVLPGSRFNSLLLNRYKGASDYVAWHAD 215

Query: 148 DEKLYGSTPEIASVSFGCERDFLLKIKP-SKSYQG 181
           DEK+YG TPEIASVSFGCERDF+LK K   +S QG
Sbjct: 216 DEKIYGPTPEIASVSFGCERDFVLKKKKDEESSQG 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821443|ref|XP_002878604.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297324443|gb|EFH54863.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  249 bits (636), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 110/152 (72%), Positives = 127/152 (83%)

Query: 28  RMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVAS 87
           R  +DLG+GS++IY  R +  + SW FFDYL+  IPW RPTIRVFGRSCLQPRDTCYVAS
Sbjct: 89  RRTIDLGHGSDLIYIQRFLPFQQSWTFFDYLDKHIPWTRPTIRVFGRSCLQPRDTCYVAS 148

Query: 88  EGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHAD 147
            G+T L+YSGYRP+ YSWDDFPPLK+ILD + K LPGSRFNSLLLNRYKG +DYV WHAD
Sbjct: 149 SGLTALVYSGYRPNAYSWDDFPPLKEILDAIYKALPGSRFNSLLLNRYKGASDYVAWHAD 208

Query: 148 DEKLYGSTPEIASVSFGCERDFLLKIKPSKSY 179
           DEK+YG TPEIASVSFGCERDF+LK K  + +
Sbjct: 209 DEKIYGPTPEIASVSFGCERDFVLKKKKHEEF 240

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87162794|gb|ABD28589.1| 2OG-Fe(II) oxygenase [Medicago truncatula]

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/172 (66%), Positives = 140/172 (81%), Gaps = 5/172 (2%)

Query: 12  AKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRV 71
           ++ NP++  +K++      +DLGNGS+V++  R+I  E SWK+F+YL+  IPW RPTIRV
Sbjct: 22  SEPNPNETAKKSE-----TIDLGNGSDVVFIQRLIPSEQSWKWFNYLDKHIPWTRPTIRV 76

Query: 72  FGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLL 131
           FG+S LQPRDTCYVA+ G+T+L YSGY+PH YSWDD+PPLKDILD V K LPGS FNSLL
Sbjct: 77  FGKSFLQPRDTCYVATSGLTELSYSGYQPHAYSWDDYPPLKDILDAVHKALPGSSFNSLL 136

Query: 132 LNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQGPI 183
           LNRYKGG+DYVGWHADDEKLYG TPEIAS+S GC+RDF+LK KPSK   G +
Sbjct: 137 LNRYKGGDDYVGWHADDEKLYGPTPEIASLSLGCDRDFVLKKKPSKKPHGMV 188

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448069|ref|XP_003594310.1| Alpha-ketoglutarate-dependent dioxygenase alkB-like protein [Medicago truncatula] gi|355483358|gb|AES64561.1| Alpha-ketoglutarate-dependent dioxygenase alkB-like protein [Medicago truncatula] gi|388502228|gb|AFK39180.1| unknown [Medicago truncatula]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 138/166 (83%), Gaps = 5/166 (3%)

Query: 12  AKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRV 71
           ++ NP++  +K++      +DLGNGS+V++  R+I  E SWK+F+YL+  IPW RPTIRV
Sbjct: 22  SEPNPNETAKKSE-----TIDLGNGSDVVFIQRLIPSEQSWKWFNYLDKHIPWTRPTIRV 76

Query: 72  FGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLL 131
           FG+S LQPRDTCYVA+ G+T+L YSGY+PH YSWDD+PPLKDILD V K LPGS FNSLL
Sbjct: 77  FGKSFLQPRDTCYVATSGLTELSYSGYQPHAYSWDDYPPLKDILDAVHKALPGSSFNSLL 136

Query: 132 LNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
           LNRYKGG+DYVGWHADDEKLYG TPEIAS+S GC+RDF+LK KPSK
Sbjct: 137 LNRYKGGDDYVGWHADDEKLYGPTPEIASLSLGCDRDFVLKKKPSK 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532818|ref|XP_003534967.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 3-like [Glycine max]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 110/159 (69%), Positives = 132/159 (83%)

Query: 19  DDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQ 78
           ++  N+  +R  VDLGNGS+V+Y  R+I  + SWK+F YL+  IPW RPTIRVFG+S LQ
Sbjct: 11  EENPNETVKRETVDLGNGSDVVYIQRLIPSDQSWKWFHYLDKHIPWTRPTIRVFGKSFLQ 70

Query: 79  PRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGG 138
           PRDTCYVA+ G+T+L YSGY+PH YSWDD+PPLKD+LD V K LPGS FNSLLLNRY GG
Sbjct: 71  PRDTCYVATPGLTELTYSGYQPHAYSWDDYPPLKDMLDAVHKALPGSSFNSLLLNRYNGG 130

Query: 139 NDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
           NDYVGWH+DDEKLYG TPEIAS++FGC+RDF+LK KP K
Sbjct: 131 NDYVGWHSDDEKLYGPTPEIASLTFGCDRDFVLKKKPCK 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434054|ref|XP_004134811.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 3-like [Cucumis sativus] gi|449520163|ref|XP_004167103.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 3-like [Cucumis sativus]

 Score =  242 bits (617), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 118/183 (64%), Positives = 137/183 (74%), Gaps = 8/183 (4%)

Query: 1   MSLRFRA---KEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDY 57
           MSLRF+     E E K     D  K     R  +DLGNGSE++Y  + +  + +W +FD+
Sbjct: 1   MSLRFKEVTDSESETKIPRPFDLGK-----RQTLDLGNGSEILYISKFVSSDQAWTWFDF 55

Query: 58  LNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDI 117
           LN RIPW RPTI VFGRS LQPRDTCYVA+ G+T L YSGY+PH Y+WDDF PLKDILD 
Sbjct: 56  LNQRIPWTRPTICVFGRSVLQPRDTCYVANPGLTTLTYSGYKPHAYTWDDFTPLKDILDA 115

Query: 118 VLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
           V + LPGSRFNSLLLNRYKGGNDYVGWH+DDEK+Y    EIASVSFGCERDFLLK KP+K
Sbjct: 116 VHEALPGSRFNSLLLNRYKGGNDYVGWHSDDEKVYALNQEIASVSFGCERDFLLKKKPNK 175

Query: 178 SYQ 180
           + Q
Sbjct: 176 TSQ 178

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218197985|gb|EEC80412.1| hypothetical protein OsI_22576 [Oryza sativa Indica Group]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/188 (59%), Positives = 135/188 (71%), Gaps = 10/188 (5%)

Query: 1   MSLRFRAKEKEAKANP----------DDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMED 50
           M+ R R +   A  NP            + +  +  +R V DLG GSEV++ PR +  E 
Sbjct: 2   MASRSRLRLAAAGENPIPHSKSGGEGGTERKPEEALRREVTDLGGGSEVVHVPRFVPREA 61

Query: 51  SWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPP 110
           +W +FDYL+ RIPW RPTIRVFGRS +QPRDTCYVA EG+T L YSG++PH +SWD+FP 
Sbjct: 62  AWGWFDYLDKRIPWTRPTIRVFGRSAVQPRDTCYVADEGLTDLRYSGHQPHAHSWDEFPV 121

Query: 111 LKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFL 170
           LKDIL  V + LPGS FNSLLLNRYK G+DYV WHADDE LYG TPEIASV+ GCER+FL
Sbjct: 122 LKDILKAVHEALPGSHFNSLLLNRYKTGSDYVSWHADDEPLYGPTPEIASVTLGCEREFL 181

Query: 171 LKIKPSKS 178
           L+ KP+KS
Sbjct: 182 LRKKPTKS 189

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|86361423|gb|ABC94593.1| oxidoreductase-like protein [Oryza sativa Indica Group]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/188 (59%), Positives = 135/188 (71%), Gaps = 10/188 (5%)

Query: 1   MSLRFRAKEKEAKANP----------DDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMED 50
           M+ R R +   A  NP            + +  +  +R V DLG GSEV++ PR +  E 
Sbjct: 1   MASRSRLRLAAAGENPIPHSKSGGEGGTERKPEEALRREVTDLGGGSEVVHVPRFVPREA 60

Query: 51  SWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPP 110
           +W +FDYL+ RIPW RPTIRVFGRS +QPRDTCYVA EG+T L YSG++PH +SWD+FP 
Sbjct: 61  AWGWFDYLDKRIPWTRPTIRVFGRSAVQPRDTCYVADEGLTDLRYSGHQPHAHSWDEFPV 120

Query: 111 LKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFL 170
           LKDIL  V + LPGS FNSLLLNRYK G+DYV WHADDE LYG TPEIASV+ GCER+FL
Sbjct: 121 LKDILKAVHEALPGSHFNSLLLNRYKTGSDYVSWHADDEPLYGPTPEIASVTLGCEREFL 180

Query: 171 LKIKPSKS 178
           L+ KP+KS
Sbjct: 181 LRKKPTKS 188

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2060430	314	ALKBH2 "homolog of E. coli alk	0.841	0.490	0.735	2.3e-62
UNIPROTKB|E2R042	259	ALKBH2 "Uncharacterized protei	0.573	0.405	0.394	3.2e-16
UNIPROTKB|Q9KKY9	202	VC_A0961 "Putative uncharacter	0.688	0.623	0.356	3.3e-15
TIGR_CMR|VC_A0961	202	VC_A0961 "hypothetical protein	0.688	0.623	0.356	3.3e-15
UNIPROTKB|E1C3L3	286	ALKBH3 "Uncharacterized protei	0.748	0.479	0.351	1.8e-13
UNIPROTKB|I3LAK2	259	ALKBH2 "Uncharacterized protei	0.590	0.416	0.383	2.1e-13
UNIPROTKB|F1N437	278	ALKBH2 "Alpha-ketoglutarate-de	0.573	0.377	0.385	3.4e-13
UNIPROTKB|Q58DM4	278	ALKBH2 "Alpha-ketoglutarate-de	0.573	0.377	0.385	4.4e-13
MGI|MGI:2141032	239	Alkbh2 "alkB, alkylation repai	0.573	0.439	0.394	5.6e-13
UNIPROTKB|Q6NS38	261	ALKBH2 "Alpha-ketoglutarate-de	0.573	0.402	0.403	7.1e-13

TAIR|locus:2060430 ALKBH2 "homolog of E. coli alkB" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 114/155 (73%), Positives = 129/155 (83%)

Query:    28 RMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVAS 87
             R  +DLG+GS++IY  R +  + SW FFDYL+  IPW RPTIRVFGRSCLQPRDTCYVAS
Sbjct:    96 RKTIDLGHGSDLIYIQRFLPFQQSWTFFDYLDKHIPWTRPTIRVFGRSCLQPRDTCYVAS 155

Query:    88 EGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHAD 147
              G+T L+YSGYRP  YSWDDFPPLK+ILD + KVLPGSRFNSLLLNRYKG +DYV WHAD
Sbjct:   156 SGLTALVYSGYRPTSYSWDDFPPLKEILDAIYKVLPGSRFNSLLLNRYKGASDYVAWHAD 215

Query:   148 DEKLYGSTPEIASVSFGCERDFLLKIKPSK-SYQG 181
             DEK+YG TPEIASVSFGCERDF+LK K  + S QG
Sbjct:   216 DEKIYGPTPEIASVSFGCERDFVLKKKKDEESSQG 250

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0006281 "DNA repair" evidence=IDA

GO:0035514 "DNA demethylase activity" evidence=IDA

UNIPROTKB|E2R042 ALKBH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 174 (66.3 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
 Identities = 43/109 (39%), Positives = 59/109 (54%)

Query:    69 IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
             ++VFG+    PR      + G+T   +SG    P  W   P L+ + D V  V+ G  FN
Sbjct:    97 VQVFGKWHSVPRKQATYGNAGLTYT-FSGLTLSPKPW--IPVLEHVRDRV-SVVTGETFN 152

Query:   129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
              +L+NRYK G D++G H DDE+       IASVSFG  RDF  + K S+
Sbjct:   153 FVLVNRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFFFRHKDSR 201

GO:0051747 "cytosine C-5 DNA demethylase activity" evidence=IEA

GO:0043734 "DNA-N1-methyladenine dioxygenase activity" evidence=IEA

GO:0035511 "oxidative DNA demethylation" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IEA

UNIPROTKB|Q9KKY9 VC_A0961 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 47/132 (35%), Positives = 68/132 (51%)

Query:    41 YFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRP 100
             +FP+ +    + + F  +   + W + +IR+FG+S LQPR   +   +G     YSG   
Sbjct:    25 WFPQFLTPIQADQAFQQMLTHLDWQQKSIRLFGKSVLQPRLIAWYGEKGYR---YSGLS- 80

Query:   101 HPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIAS 160
                S   FPP    L    +    + FNS+L N Y+ G D +GWH D+E   GS P IAS
Sbjct:    81 --LSAQPFPPPLLTLKTQCEQAAQAPFNSVLANLYRDGQDSMGWHQDNEPELGSNPVIAS 138

Query:   161 VSFGCERDFLLK 172
             +S G  R FLL+
Sbjct:   139 LSLGESRRFLLR 150

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_A0961 VC_A0961 "hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 47/132 (35%), Positives = 68/132 (51%)

Query:    41 YFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRP 100
             +FP+ +    + + F  +   + W + +IR+FG+S LQPR   +   +G     YSG   
Sbjct:    25 WFPQFLTPIQADQAFQQMLTHLDWQQKSIRLFGKSVLQPRLIAWYGEKGYR---YSGLS- 80

Query:   101 HPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIAS 160
                S   FPP    L    +    + FNS+L N Y+ G D +GWH D+E   GS P IAS
Sbjct:    81 --LSAQPFPPPLLTLKTQCEQAAQAPFNSVLANLYRDGQDSMGWHQDNEPELGSNPVIAS 138

Query:   161 VSFGCERDFLLK 172
             +S G  R FLL+
Sbjct:   139 LSLGESRRFLLR 150

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C3L3 ALKBH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 52/148 (35%), Positives = 71/148 (47%)

Query:    37 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPT-IRVFGRSCLQPRDTCYVASEGVTQLIY 95
             S +   P  I  E +   F+ L   +PW + T  R  G S  +PR T +    G     Y
Sbjct:    88 SRIHLVPGFIDSEQADWMFEQLLQDVPWGQRTHTRQEG-SFEEPRLTSWY---GELPYTY 143

Query:    96 SGY--RPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYG 153
             S    +P+P +W    P+  +L   ++   G  FNSLL N Y+   D V WH+DDE   G
Sbjct:   144 SRITMQPNP-NWH---PVLTMLKEQIEEFTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLG 199

Query:   154 STPEIASVSFGCERDFLLKIKPSKSYQG 181
               P IAS+SFG  R F ++ KPS    G
Sbjct:   200 KNPVIASLSFGATRTFEMRKKPSPEENG 227

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0035552 "oxidative single-stranded DNA demethylation" evidence=IEA

GO:0043734 "DNA-N1-methyladenine dioxygenase activity" evidence=IEA

GO:0051747 "cytosine C-5 DNA demethylase activity" evidence=IEA

UNIPROTKB|I3LAK2 ALKBH2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 43/112 (38%), Positives = 60/112 (53%)

Query:    69 IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
             ++VFG+    PR        G+T   +SG    P  W   P L+ + D V  ++ G  FN
Sbjct:    97 VQVFGKWHNVPRKQATYGDAGLTYT-FSGLTLSPKPW--VPVLEHVRDRV-SLVTGQTFN 152

Query:   129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQ 180
              +L+NRYK G+D++G H DDE+       IASVSFG  RDF  + K S+  Q
Sbjct:   153 FVLVNRYKDGHDHIGEHRDDERELAPGSPIASVSFGACRDFFFRHKDSRGKQ 204

GO:0051747 "cytosine C-5 DNA demethylase activity" evidence=IEA

GO:0043734 "DNA-N1-methyladenine dioxygenase activity" evidence=IEA

GO:0035511 "oxidative DNA demethylation" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IEA

UNIPROTKB|F1N437 ALKBH2 "Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 42/109 (38%), Positives = 59/109 (54%)

Query:    69 IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
             ++VFG+    PR        G+T   +SG    P  W   P L+ + D V  ++ G  FN
Sbjct:    98 VQVFGKWHSVPRKQATYGDTGLTYT-FSGLTLSPKPW--IPVLERVRDRV-SLVTGQTFN 153

Query:   129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
              +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+
Sbjct:   154 FVLINRYKDGQDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSR 202

GO:0051747 "cytosine C-5 DNA demethylase activity" evidence=IEA

GO:0043734 "DNA-N1-methyladenine dioxygenase activity" evidence=IEA

GO:0035511 "oxidative DNA demethylation" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IEA

UNIPROTKB|Q58DM4 ALKBH2 "Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2" [Bos taurus (taxid:9913)]

 Score = 173 (66.0 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 42/109 (38%), Positives = 59/109 (54%)

Query:    69 IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
             ++VFG+    PR        G+T   +SG    P  W   P L+ + D V  ++ G  FN
Sbjct:    98 VQVFGKWHSVPRKQATYGDTGLTYT-FSGLTLSPKPW--IPVLERVRDRV-SLVTGQTFN 153

Query:   129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
              +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+
Sbjct:   154 FVLINRYKDGQDHIGEHRDDERELALGSPIASVSFGACRDFVFRHKDSR 202

GO:0008198 "ferrous iron binding" evidence=ISS

GO:0051747 "cytosine C-5 DNA demethylase activity" evidence=ISS

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=ISS

GO:0043734 "DNA-N1-methyladenine dioxygenase activity" evidence=ISS

GO:0035511 "oxidative DNA demethylation" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

MGI|MGI:2141032 Alkbh2 "alkB, alkylation repair homolog 2 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 43/109 (39%), Positives = 59/109 (54%)

Query:    69 IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
             ++VFG+    PR        G+T   +SG    P  W   P L+ + D V +V  G  FN
Sbjct:    77 VQVFGKWHSVPRKQATYGDAGLTYT-FSGLTLTPKPW--VPVLERVRDRVCEVT-GQTFN 132

Query:   129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
              +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+
Sbjct:   133 FVLVNRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFIFRHKDSR 181

GO:0004519 "endonuclease activity" evidence=IDA

GO:0004527 "exonuclease activity" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IDA

GO:0035511 "oxidative DNA demethylation" evidence=ISO

GO:0043734 "DNA-N1-methyladenine dioxygenase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051747 "cytosine C-5 DNA demethylase activity" evidence=ISO;IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0080111 "DNA demethylation" evidence=IDA

UNIPROTKB|Q6NS38 ALKBH2 "Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 44/109 (40%), Positives = 58/109 (53%)

Query:    69 IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
             ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN
Sbjct:    99 VQVFGKWHSVPRKQATYGDAGLTYT-FSGLTLSPKPW--IPVLERIRDHVSGVT-GQTFN 154

Query:   129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
              +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+
Sbjct:   155 FVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSR 203

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IDA

GO:0043734 "DNA-N1-methyladenine dioxygenase activity" evidence=IDA

GO:0035511 "oxidative DNA demethylation" evidence=IDA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IDA;TAS

GO:0051747 "cytosine C-5 DNA demethylase activity" evidence=IDA;TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0080111 "DNA demethylation" evidence=TAS

GO:0070989 "oxidative demethylation" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.11	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
pfam13532	190	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su	3e-18
COG3145	194	COG3145, AlkB, Alkylated DNA repair protein [DNA r	2e-07

>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily

 Score = 77.7 bits (192), Expect = 3e-18
 Identities = 31/140 (22%), Positives = 47/140 (33%), Gaps = 10/140 (7%)

Query: 39  VIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGY 98
           ++  P  +  E+       L    PW +P     G+        C           Y  Y
Sbjct: 2   LVLLPGFLSAEEQAALLRELLAEAPWRQPMTPG-GKPMSVRMTNCGPLGWVTDGPGYR-Y 59

Query: 99  RPHPYS---WDDFPP-LKDILDIVLK--VLPGSRFNSLLLNRYKGGNDYVGWHADDEKLY 152
              P +   W  FP  L  + + +      PG   N+ L+N Y+ G   +G H D ++  
Sbjct: 60  SGTPVTGEPWPPFPAVLLQLAERLAAAAGPPGFEPNACLVNFYRPG-ARMGLHQDKDE-L 117

Query: 153 GSTPEIASVSFGCERDFLLK 172
                I SVS G    F   
Sbjct: 118 DFGAPIVSVSLGDPALFRFG 137

Length = 190

>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair]

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 10/113 (8%)

Query: 63  PWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 122
           PW RP    +G+    PR   +V         YS   P        PPL  +   +    
Sbjct: 43  PWFRPRRTPYGKPMSVPRLLGWV--TDRRGYRYSLRSPLTGKPW--PPLLALFHDLFGAA 98

Query: 123 PGSRFNSL---LLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLK 172
            G  F      L+NRY+ G   +GWH D ++     P +AS+S G    F L+
Sbjct: 99  -GYPFEGPEAVLVNRYRPG-ASIGWHQDKDEEDDRPP-VASLSLGAPCIFRLR 148

Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
TIGR00568	169	alkb DNA alkylation damage repair protein AlkB. Pr	99.96
PRK15401	213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	99.95
PF13532	194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	99.9
COG3145	194	AlkB Alkylated DNA repair protein [DNA replication	99.87
KOG3200	224	consensus Uncharacterized conserved protein [Funct	98.91
PF12933	253	FTO_NTD: FTO catalytic domain; InterPro: IPR024367	97.83
KOG4176	323	consensus Uncharacterized conserved protein [Funct	97.17
KOG3959	306	consensus 2-Oxoglutarate- and iron-dependent dioxy	92.74
PRK05467	226	Fe(II)-dependent oxygenase superfamily protein; Pr	88.18
KOG2731	378	consensus DNA alkylation damage repair protein [RN	84.68
PLN00052	310	prolyl 4-hydroxylase; Provisional	80.11

>TIGR00568 alkb DNA alkylation damage repair protein AlkB

Probab=99.96  E-value=1.5e-28  Score=195.46  Aligned_cols=129  Identities=21%  Similarity=0.306  Sum_probs=105.1

Q ss_pred             CCCCCHHHHHHHHHHHhhc---CCCCCceeeecCCcccccceee----EecCCCCcceeccCCCC-CCCCCCCCch-HHH
Q 030096           43 PRIIKMEDSWKFFDYLNNR---IPWNRPTIRVFGRSCLQPRDTC----YVASEGVTQLIYSGYRP-HPYSWDDFPP-LKD  113 (183)
Q Consensus        43 ~~fl~~~~a~~L~~~L~~~---~~w~~~~~~~~Gk~~~~pR~~~----wy~~~~~~~Y~Ysg~~~-~~~~wp~~P~-ll~  113 (183)
                      .+++....+..|.+++++.   .+|+| .++++||++.+||+++    |+++ +. .|.|++..+ ...+||++|. |.+
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~~~~~w~~-~~~~~gk~~~~pr~~~~~l~W~~~-g~-~Y~ys~~~~~~~~~~p~~P~~L~~   78 (169)
T TIGR00568         2 KRYFAFNAQEQLIRDINDVASQDPFRQ-YVTPGGYTMSVAMTNLGKLGWTTH-GQ-GYLYSPKDPQTNKPWPAMPQDLGD   78 (169)
T ss_pred             CCccChHHHHHHHHHHHHHhhcCCCcC-eEecCCeEeeehhhhcccceEEcC-CC-cccCCCcccCCCCCCCCCCHHHHH
Confidence            4678888888888877753   68999 5899999999999996    9999 66 699999976 4456665555 666


Q ss_pred             HHHHHHhhcCCC---CCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEeeCCCC
Q 030096          114 ILDIVLKVLPGS---RFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK  177 (183)
Q Consensus       114 l~~~~~e~~~g~---~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~k~~~  177 (183)
                      ++.++ ++.++.   .||+||||+|++| ++||||+|+ ..++.+++|||||||++|.|.|+++..+
T Consensus        79 L~~~v-~~~~g~~~~~~n~~LvN~Y~~G-d~mg~H~D~-~e~~~~~pI~SvSLG~~r~F~~~~~~~~  142 (169)
T TIGR00568        79 LCERV-ATAAGFPDFQPDACLVNRYAPG-ATLSLHQDR-DEPDLRAPLLSVSLGLPAIFLIGGLKRN  142 (169)
T ss_pred             HHHHH-HHHhCCCCCCCCEEEEEeecCC-Ccccccccc-ccccCCCCEEEEeCCCCEEEEecCCcCC
Confidence            55444 556665   8999999999998 999999994 5678899999999999999999987543

Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional

Probab=99.95  E-value=4e-27  Score=193.07  Aligned_cols=134  Identities=19%  Similarity=0.269  Sum_probs=109.7

Q ss_pred             EeCCCCccEEEeCCCCCHHHHHHHHHHHhh---cCCCCCceeeecCCccccccee-----eEecCCCCcceeccCCC-CC
Q 030096           31 VDLGNGSEVIYFPRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQPRDT-----CYVASEGVTQLIYSGYR-PH  101 (183)
Q Consensus        31 ~~l~~~~~~~~~~~fl~~~~a~~L~~~L~~---~~~w~~~~~~~~Gk~~~~pR~~-----~wy~~~~~~~Y~Ysg~~-~~  101 (183)
                      ..|.+|  +.++++|. .+++++|++.|++   +++|++  ..++|+..+++|++     +||+|..  .|+|++.. ..
T Consensus        14 ~~~~~g--~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~--~~~~gg~~msv~mt~~G~~~W~~d~~--~YrYs~~~~~~   86 (213)
T PRK15401         14 EPLAPG--AVLLRGFA-LAAAEALLAAIEAVAAQAPFRH--MVTPGGYTMSVAMTNCGALGWVTDRR--GYRYSPIDPLT   86 (213)
T ss_pred             eecCCC--cEEeCCCC-HHHHHHHHHHHHHHHhcCCccc--eecCCCCcceeEEeccccceEecCCC--CcccCCcCCCC
Confidence            557664  89999996 7889999999998   789988  56778889999999     8999874  69999986 67


Q ss_pred             CCCCCCCch-HHHHHHHHHhhcCC---CCCcEEEEceeCCCCCCccccccC-CCCcCCCCcEEEEEcCCceeeEEeeCC
Q 030096          102 PYSWDDFPP-LKDILDIVLKVLPG---SRFNSLLLNRYKGGNDYVGWHADD-EKLYGSTPEIASVSFGCERDFLLKIKP  175 (183)
Q Consensus       102 ~~~wp~~P~-ll~l~~~~~e~~~g---~~fn~~LvN~Y~~G~d~ig~HsD~-e~~lg~~~~IasvSLGa~R~F~~r~k~  175 (183)
                      +.+||++|. |.+++.++ +...+   ..||+||||+|++|+ +||||+|+ |..  .+++|||||||++|.|+|+++.
T Consensus        87 ~~pwp~~P~~l~~L~~~~-~~~~~~~~~~p~a~LvN~Y~~G~-~mg~H~D~~E~~--~~~pI~SvSLG~~~~F~~~~~~  161 (213)
T PRK15401         87 GKPWPAMPASFLALAQRA-AAAAGFPGFQPDACLINRYAPGA-KLSLHQDKDERD--FRAPIVSVSLGLPAVFQFGGLK  161 (213)
T ss_pred             CCCCCCchHHHHHHHHHH-HHHcCCCCCCCCEEEEEeccCcC-ccccccCCCccc--CCCCEEEEeCCCCeEEEecccC
Confidence            889997775 55555444 43445   489999999999985 99999996 443  5678999999999999998653

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A

Probab=99.90  E-value=2.7e-23  Score=166.18  Aligned_cols=133  Identities=32%  Similarity=0.594  Sum_probs=95.4

Q ss_pred             cEEEeCCCCCHHHHHHHHHHHhhcCCCCCceeeecCCcccccce----eeEecCCCCcceeccCC-CCCCCCCCCCch-H
Q 030096           38 EVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRD----TCYVASEGVTQLIYSGY-RPHPYSWDDFPP-L  111 (183)
Q Consensus        38 ~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~----~~wy~~~~~~~Y~Ysg~-~~~~~~wp~~P~-l  111 (183)
                      ++.|+++||+.+++.+|++.|.+..+|.+.+... ++.+..+|.    ..|++.. . .|.|++. .....+|+++|. +
T Consensus         1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~y~y~~~~~~~~~~~~~~p~~l   77 (194)
T PF13532_consen    1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYPM-GKVYSLPRKLCGGLSWVGDG-P-SYRYSGKRPVRSKPWPPFPEWL   77 (194)
T ss_dssp             -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCC-CCECCECCE-SSEEEEEECT----CCCTCC-EECCCEBSCCHHHH
T ss_pred             CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcC-CCEEccceecceeeEEECCC-C-CeEcCCccccCCCCCCCccHHH
Confidence            4899999999999999999999999998887665 788888776    4687754 3 5999987 556667775555 5


Q ss_pred             HHHHHHHHhhc---CCCCCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEeeCC
Q 030096          112 KDILDIVLKVL---PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP  175 (183)
Q Consensus       112 l~l~~~~~e~~---~g~~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~k~  175 (183)
                      .+++.++.+..   .++.||+||||+|++|+ +|++|+|++ .++.+++||+||||++|.|.|+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~-~i~~H~D~~-~~~~~~~I~slSLG~~~~~~f~~~~  142 (194)
T PF13532_consen   78 SRLLERLVEATGIPPGWRPNQCLINYYRDGS-GIGPHSDDE-EYGFGPPIASLSLGSSRVFRFRNKS  142 (194)
T ss_dssp             HHHHHHHHHHHT-SHSS--SEEEEEEESSTT--EEEE---T-TC-CCSEEEEEEEES-EEEEEEECG
T ss_pred             HHHHHHHHHHhccccCCCCCEEEEEecCCCC-CcCCCCCcc-cccCCCcEEEEEEccCceEEEeecc
Confidence            66666554422   36889999999999986 999999999 4478999999999999999999764

...

>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]

Probab=99.87  E-value=6.5e-22  Score=159.86  Aligned_cols=137  Identities=26%  Similarity=0.470  Sum_probs=102.5

Q ss_pred             EEeCCCCccEEEeCCCC--CHHHHHHHHHHHhhcCCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCCC-CCCC
Q 030096           30 VVDLGNGSEVIYFPRII--KMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHP-YSWD  106 (183)
Q Consensus        30 ~~~l~~~~~~~~~~~fl--~~~~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~-~~wp  106 (183)
                      ...+++|  +.+.++|+  ...+..+.+..+..+.||.+..++++||.+.++|..+|+++ .. .|.|++....+ .+||
T Consensus        10 ~~~~~~G--~~~~~~~~~~~~~~l~~~l~~~~~~~P~~~~~~~~~g~~~sV~r~~~W~~d-~~-gy~y~~~~p~~~~p~p   85 (194)
T COG3145          10 RRQLAPG--AVILPGFLLLTQGALVAALLFLLSQAPWFRPRRTPYGKPMSVPRLLGWVTD-RR-GYRYSLRSPLTGKPWP   85 (194)
T ss_pred             cccCCCC--eEEEecccccchHHHHHHHHHhcccCcccceeecCCCcEeeeeeccceecc-cc-cccccccccCCCCCCC
Confidence            3445555  66677766  22233334456667789999999999999999999999998 44 69999988655 5676


Q ss_pred             CCchHHHHHHHHHhhcCCCCCcE---EEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEeeCCC
Q 030096          107 DFPPLKDILDIVLKVLPGSRFNS---LLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPS  176 (183)
Q Consensus       107 ~~P~ll~l~~~~~e~~~g~~fn~---~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~k~~  176 (183)
                         .+..+...+ ....|..++.   ||+|+|++| |+||||+|.+..... ++|||||||++|.|+|+++..
T Consensus        86 ---~l~~~~~~~-~~~~g~~~~~~ea~Lvn~Y~pG-d~ig~HqD~~e~~~~-~~v~slSLg~~~~F~~~~~~r  152 (194)
T COG3145          86 ---PLLALFHDL-FGAAGYPFEGPEAVLVNRYRPG-ASIGWHQDKDEEDDR-PPVASLSLGAPCIFRLRGRRR  152 (194)
T ss_pred             ---ccHHHHHHH-HHHhcCCCCChhheeEEeccCC-CccccccccccccCC-CceEEEecCCCeEEEeccccC
Confidence               444433333 2235655555   999999998 999999999887554 899999999999999998763

>KOG3200 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=1.4e-08  Score=81.00  Aligned_cols=114  Identities=23%  Similarity=0.295  Sum_probs=82.1

Q ss_pred             cEEEeCCCCCHHHHHHHHHHHhhc--CCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCCCCCCCCCchHHHHH
Q 030096           38 EVIYFPRIIKMEDSWKFFDYLNNR--IPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDIL  115 (183)
Q Consensus        38 ~~~~~~~fl~~~~a~~L~~~L~~~--~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~wp~~P~ll~l~  115 (183)
                      .+-|+|+|++.+|...++.++...  -.|++         ....|++.|-|-.+.     .|  +.|...|  |+|..+.
T Consensus        13 t~~YIPnfIt~EEe~~~lshIe~ap~pkW~~---------L~NRRLqNyGGvvh~-----~g--lipeelP--~wLq~~v   74 (224)
T KOG3200|consen   13 TMIYIPNFITEEEENLYLSHIENAPQPKWRV---------LANRRLQNYGGVVHK-----TG--LIPEELP--PWLQYYV   74 (224)
T ss_pred             eEEEcCCccChHHHHHHHHHHhcCCCchhHH---------HHhhhhhhcCCcccc-----CC--cCccccC--HHHHHHH
Confidence            479999999999988888887543  24644         233466666553221     12  2345555  5666666


Q ss_pred             HHHHh-hcCCCCCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEee
Q 030096          116 DIVLK-VLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKI  173 (183)
Q Consensus       116 ~~~~e-~~~g~~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~  173 (183)
                      .+++. .+.+...|++|||.|..| .+|.-|.|...+   .|+|++||||+...+.|-.
T Consensus        75 ~kinnlglF~s~~NHVLVNeY~pg-qGImPHtDGPaf---~piVstiSlGsh~vldf~~  129 (224)
T KOG3200|consen   75 DKINNLGLFKSPANHVLVNEYLPG-QGIMPHTDGPAF---HPIVSTISLGSHTVLDFYD  129 (224)
T ss_pred             HHhhcccccCCCcceeEeecccCC-CCcCcCCCCCcc---cceEEEEecCCceEEeccc
Confidence            77753 123457899999999997 699999999886   7899999999999999854

>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family

Probab=97.83  E-value=3.7e-05  Score=64.29  Aligned_cols=118  Identities=23%  Similarity=0.349  Sum_probs=63.6

Q ss_pred             CCCCHH---HHHHHHHHHhhcCCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCCCCCCCCC--------chHH
Q 030096           44 RIIKME---DSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDF--------PPLK  112 (183)
Q Consensus        44 ~fl~~~---~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~wp~~--------P~ll  112 (183)
                      +-|+.+   +..+-|..|++.=-|.++.+++-||....+=.-...|++|.+ |.|-+...=+.||+.-        |.+.
T Consensus        21 ~~lP~~lH~~vq~Af~tL~~~Gcf~~Dlvr~~~k~~~T~VsR~L~G~pG~T-YkYl~~RLFa~PW~~~~~~~~~~~~~i~   99 (253)
T PF12933_consen   21 ESLPEELHEEVQEAFDTLRKHGCFFRDLVRIGGKDSFTPVSRTLLGEPGCT-YKYLNTRLFAVPWPDEGSEIKYQSPEIR   99 (253)
T ss_dssp             GGS-HHHHHHHHHHHHHHHHTT--B--EE-GGG--EE-SSEEEEEESTTBE-EEETTEEEE-EE-------------HHH
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCchHHHHHhhCCccccceeehhhcCCCCce-eEecceeEEeccCCCCCcccccCChhHH
Confidence            345543   455567888777779999999999988887777899999994 9999988778899741        2332


Q ss_pred             HHHH---HHHh-----------hc----------CCCCCcEEEEceeCC----------------CCCCccccccCCCCc
Q 030096          113 DILD---IVLK-----------VL----------PGSRFNSLLLNRYKG----------------GNDYVGWHADDEKLY  152 (183)
Q Consensus       113 ~l~~---~~~e-----------~~----------~g~~fn~~LvN~Y~~----------------G~d~ig~HsD~e~~l  152 (183)
                      ...+   ++++           +.          ....||.+|||+++.                |+-+||||+|...  
T Consensus       100 ~a~~al~~LN~~L~~~~~~~l~~~~~~~~~~~~~~~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~DenL--  177 (253)
T PF12933_consen  100 SACKALGKLNDYLCSRAVQALEGRRLARVEEDEVGSCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDENL--  177 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH---------------EEEEEEE-S--S-SSS--B-SSS---BEEEEEE---SB--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccceeeehhhhhccCcccccccccccccccCCcceeeeecccccc--
Confidence            2211   1111           00          113699999999987                5668999999864  


Q ss_pred             CCCCcEEEEEcC
Q 030096          153 GSTPEIASVSFG  164 (183)
Q Consensus       153 g~~~~IasvSLG  164 (183)
                      .+.++||..|.-
T Consensus       178 ~~~StVAVY~~s  189 (253)
T PF12933_consen  178 VERSTVAVYSYS  189 (253)
T ss_dssp             -TT--EEEEEEE
T ss_pred             ccccceEEEEec
Confidence            478899988753

This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.

>KOG4176 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.002  Score=56.30  Aligned_cols=126  Identities=17%  Similarity=0.156  Sum_probs=72.3

Q ss_pred             cEEEeCCCCCHHHHHHHHHHHhhcCCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCC----CCCCCCCchHHH
Q 030096           38 EVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPH----PYSWDDFPPLKD  113 (183)
Q Consensus        38 ~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~----~~~wp~~P~ll~  113 (183)
                      .+.++++|++..+...+...+..+. |..   ++-||.    |.+--|+-    .+.|.-....    ..+.|  +.+..
T Consensus       129 e~~~~~d~V~el~e~~l~~~~~~e~-~~~---~~~gk~----R~~iq~G~----~f~y~~~~~d~~~~~~piP--s~~~~  194 (323)
T KOG4176|consen  129 ELSLIVDFVTELEEKGLIGALVDET-FTY---QESGKH----REVIQLGY----PFDYRTNNVDESKPVDPIP--SLFKS  194 (323)
T ss_pred             hceehhhhhhhhHHhhhhccccccc-cee---eccccc----eeeeecCc----eeccCCCcccccCccCCCc--hHHHH
Confidence            5888888888665555544443321 211   222432    22222221    2333221110    12233  24455


Q ss_pred             HHHHHHhh-cCCCCCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEeeCCCCCCCC
Q 030096          114 ILDIVLKV-LPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQG  181 (183)
Q Consensus       114 l~~~~~e~-~~g~~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~k~~~~~~~  181 (183)
                      ++.+++.- .+...+|+|.||.|..| ++|--|-|-... +  .+|++|||=.++++.|++.-.....|
T Consensus       195 ii~rlv~~~~ip~~pd~~~iN~Ye~G-~~i~ph~~~~~F-~--~Pi~slS~lSe~~m~Fg~~~~~~~~~  259 (323)
T KOG4176|consen  195 IIDRLVSWRVIPERPDQCTINFYEPG-DGIPPHIDHSAF-L--DPISSLSFLSECTMEFGHGLLSDNIG  259 (323)
T ss_pred             HHHHhhhhccCCCCCCeeEEEeeCCC-CCCCCCCChHHh-c--CceEEEEeecceeEEecccccccCcc
Confidence            55554331 12335999999999996 799999965544 3  36999999999999999876554443

>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]

Probab=92.74  E-value=0.15  Score=43.06  Aligned_cols=109  Identities=15%  Similarity=0.313  Sum_probs=65.0

Q ss_pred             cEEEeCCCCCHHHHHHHHHHHhhcCCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCCCCCCCCCchHHHHHHH
Q 030096           38 EVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDI  117 (183)
Q Consensus        38 ~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~wp~~P~ll~l~~~  117 (183)
                      ++.++.+||+.+|..+|+..| ..+||.+.+   -|+     |.+ =||..    -.+...+.....|--+|...+....
T Consensus        73 G~~lie~Fls~~Eea~l~~~~-D~~pW~~SQ---SGR-----RKQ-dyGPK----vNFkk~Klkt~~F~G~P~~~~~v~r  138 (306)
T KOG3959|consen   73 GLTLIENFLSESEEAKLLNMI-DTVPWAQSQ---SGR-----RKQ-DYGPK----VNFKKKKLKTDTFVGMPEYADMVLR  138 (306)
T ss_pred             CeeehhhhhccchHhHHHHHh-ccCchhhhc---ccc-----ccc-ccCCc----cchhhhhhccCcccCCchHHHHHHH
Confidence            499999999999988888776 889998753   243     333 34421    1122222223233333555544322


Q ss_pred             HHhhcC---C-CCCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEE
Q 030096          118 VLKVLP---G-SRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVS  162 (183)
Q Consensus       118 ~~e~~~---g-~~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvS  162 (183)
                      ..+...   | .+|..|=+.|=..-+..|..|.||-=..|+.  ++++.
T Consensus       139 rm~~yp~l~gfqp~EqCnLeYep~kgsaIdpH~DD~WiWGeR--lv~~n  185 (306)
T KOG3959|consen  139 RMSEYPVLKGFQPFEQCNLEYEPVKGSAIDPHQDDMWIWGER--LVRSN  185 (306)
T ss_pred             HhhccchhhccCcHHHcCcccccccCCccCccccchhhhhhh--eeehh
Confidence            223222   2 4577787776666678999999997666654  44443

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional

Probab=88.18  E-value=5.1  Score=33.38  Aligned_cols=28  Identities=14%  Similarity=0.387  Sum_probs=22.5

Q ss_pred             EEEeCCCCCHHHHHHHHHHHhhcCCCCCc
Q 030096           39 VIYFPRIIKMEDSWKFFDYLNNRIPWNRP   67 (183)
Q Consensus        39 ~~~~~~fl~~~~a~~L~~~L~~~~~w~~~   67 (183)
                      +..+|++|+++++..+.+.| +...|...
T Consensus         2 i~~I~~vLs~eec~~~~~~l-e~~~~~dg   29 (226)
T PRK05467          2 LLHIPDVLSPEEVAQIRELL-DAAEWVDG   29 (226)
T ss_pred             eeeecccCCHHHHHHHHHHH-HhcCCccC
Confidence            45789999999999998888 44678653

>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]

Probab=84.68  E-value=1.9  Score=38.37  Aligned_cols=63  Identities=27%  Similarity=0.239  Sum_probs=44.8

Q ss_pred             chHHHHHHHHHhhcCC---CC-CcEEEEceeCCCCCCccccccC-CCCcCCCCcEEEEEcCCceeeEEeeC
Q 030096          109 PPLKDILDIVLKVLPG---SR-FNSLLLNRYKGGNDYVGWHADD-EKLYGSTPEIASVSFGCERDFLLKIK  174 (183)
Q Consensus       109 P~ll~l~~~~~e~~~g---~~-fn~~LvN~Y~~G~d~ig~HsD~-e~~lg~~~~IasvSLGa~R~F~~r~k  174 (183)
                      |.++.+.++.+.+.++   +. ....|.|||.-+ +.++.|-|. |.  +...++.+.|||..+.|.+.-.
T Consensus       194 ~~ll~~~~~~~~~a~~~~~~~~~~Gli~nYlsi~-~tl~ih~d~rel--d~~~pf~s~s~g~~ai~lLg~m  261 (378)
T KOG2731|consen  194 PSLLGLLREKVKAAKGFSHIVIRPGLIKNYLSID-DTLGIHLDCREL--DLSKPFYSPSLGQGAILLLGMM  261 (378)
T ss_pred             hHHhhhhhhhhhhhcCccceeccCcceeeecccC-cEEEEEeehhhc--ccCCccccccccccceeeeccc
Confidence            4666665544333333   22 355799999995 899999986 44  4555699999999999999654

>PLN00052 prolyl 4-hydroxylase; Provisional

Probab=80.11  E-value=40  Score=29.42  Aligned_cols=102  Identities=12%  Similarity=0.124  Sum_probs=55.3

Q ss_pred             cccceEEeCCCCccEEEeCCCCCHHHHHHHHHHHhhcCCCCCceeee--cCCcccccceee---EecCCCCcceeccCCC
Q 030096           25 KKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRV--FGRSCLQPRDTC---YVASEGVTQLIYSGYR   99 (183)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~~~~~--~Gk~~~~pR~~~---wy~~~~~~~Y~Ysg~~   99 (183)
                      ....++..|.-...|.++++||+.+|++.|.+.-..  .+++.++.-  -|+......+++   |+.+            
T Consensus        42 ~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~--~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~------------  107 (310)
T PLN00052         42 FNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKK--KIQRSMVADNKSGKSVMSEVRTSSGMFLDK------------  107 (310)
T ss_pred             cCCceEEEecCCCCEEEECCcCCHHHHHHHHHhccc--ccccceeecCCCCccccCCCEEecceeecC------------
Confidence            344455555555579999999999999988765533  233322211  133222222221   2211            


Q ss_pred             CCCCCCCCCchHHHHHHHHHhhcCCCCC---cEEEEceeCCCCCCccccccC
Q 030096          100 PHPYSWDDFPPLKDILDIVLKVLPGSRF---NSLLLNRYKGGNDYVGWHADD  148 (183)
Q Consensus       100 ~~~~~wp~~P~ll~l~~~~~e~~~g~~f---n~~LvN~Y~~G~d~ig~HsD~  148 (183)
                           .. .|.+..+..++ ...++...   ...-|-.|..| ..-..|-|-
T Consensus       108 -----~~-dpvv~~I~~Ri-a~~t~lp~~~~E~lQVlrY~~G-q~Y~~H~D~  151 (310)
T PLN00052        108 -----RQ-DPVVSRIEERI-AAWTFLPEENAENIQILRYEHG-QKYEPHFDY  151 (310)
T ss_pred             -----CC-CHHHHHHHHHH-HHHhCCCcccCcceEEEecCCC-CCCCCCCCc
Confidence                 00 14666654444 44555442   23456678887 477888884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
3rzl_A	208	Duplex Interrogation By A Direct Dna Repair Protein		6e-12
3rzm_A	206	Duplex Interrogation By A Direct Dna Repair Protein		6e-12
3rzh_A	209	Duplex Interrogation By A Direct Dna Repair Protein		6e-12
3s57_A	204	Abh2 Cross-Linked With Undamaged Dsdna-1 Containing		7e-12
3bty_A	203	Crystal Structure Of Human Abh2 Bound To Dsdna Cont		7e-12
3h8o_A	209	Structure Determination Of Dna Methylation Lesions		7e-12
3btz_A	202	Crystal Structure Of Human Abh2 Cross-Linked To Dsd		8e-12
3btx_A	204	X-Ray Structure Of Human Abh2 Bound To Dsdna Throug		8e-12
3bu0_A	203	Crystal Structure Of Human Abh2 Cross-Linked To Dsd		8e-12
3rzg_A	209	Duplex Interrogation By A Direct Dna Repair Protein		9e-12
2iuw_A	238	Crystal Structure Of Human Abh3 In Complex With Iro		5e-10

>pdb|3RZL|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 208

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 69  IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
           ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN
Sbjct: 46  VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGV-TGQTFN 101
Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
            +L+NRYK G+D++  H DDE+       IASVSFG  RDF+ + K S+
Sbjct: 102 FVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR 150

>pdb|3RZM|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 206

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 69  IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
           ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN
Sbjct: 45  VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGV-TGQTFN 100
Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
            +L+NRYK G+D++  H DDE+       IASVSFG  RDF+ + K S+
Sbjct: 101 FVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR 149

>pdb|3RZH|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 209

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 69  IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
           ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN
Sbjct: 47  VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGV-TGQTFN 102
Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
            +L+NRYK G+D++  H DDE+       IASVSFG  RDF+ + K S+
Sbjct: 103 FVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR 151

>pdb|3S57|A Chain A, Abh2 Cross-Linked With Undamaged Dsdna-1 Containing Cofactors Length = 204

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 69  IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
           ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN
Sbjct: 45  VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGV-TGQTFN 100
Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
            +L+NRYK G+D++  H DDE+       IASVSFG  RDF+ + K S+
Sbjct: 101 FVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR 149

>pdb|3BTY|A Chain A, Crystal Structure Of Human Abh2 Bound To Dsdna Containing 1mea Through Cross-Linking Away From Active Site Length = 203

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 69  IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
           ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN
Sbjct: 44  VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGV-TGQTFN 99
Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
            +L+NRYK G+D++  H DDE+       IASVSFG  RDF+ + K S+
Sbjct: 100 FVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR 148

>pdb|3H8O|A Chain A, Structure Determination Of Dna Methylation Lesions N1-mea And N3-mec In Duplex Dna Using A Cross-linked Host-guest System Length = 209

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 69  IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
           ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN
Sbjct: 47  VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGV-TGQTFN 102
Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
            +L+NRYK G+D++G H DD +       IASVSFG  RDF+ + K S+
Sbjct: 103 FVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSR 151

>pdb|3BTZ|A Chain A, Crystal Structure Of Human Abh2 Cross-Linked To Dsdna Length = 202

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 69  IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
           ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN
Sbjct: 43  VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGV-TGQTFN 98
Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
            +L+NRYK G+D++G H DD +       IASVSFG  RDF+ + K S+
Sbjct: 99  FVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSR 147

>pdb|3BTX|A Chain A, X-Ray Structure Of Human Abh2 Bound To Dsdna Through Active Site Cross-Linking Length = 204

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 69  IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
           ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN
Sbjct: 45  VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGV-TGQTFN 100
Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
            +L+NRYK G+D++G H DD +       IASVSFG  RDF+ + K S+
Sbjct: 101 FVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSR 149

>pdb|3BU0|A Chain A, Crystal Structure Of Human Abh2 Cross-Linked To Dsdna With Cofactors Length = 203

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 69  IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
           ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN
Sbjct: 44  VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGV-TGQTFN 99
Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
            +L+NRYK G+D++G H DD +       IASVSFG  RDF+ + K S+
Sbjct: 100 FVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSR 148

>pdb|3RZG|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 209

Iteration: 1
 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 69  IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
           ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN
Sbjct: 47  VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGV-TGQTFN 102
Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177
            +L+NRYK G+D++  H DDE+       IASVSFG  RDF+ + K S+
Sbjct: 103 FVLINRYKDGSDHICEHRDDERDLAPGSPIASVSFGASRDFVFRHKDSR 151

>pdb|2IUW|A Chain A, Crystal Structure Of Human Abh3 In Complex With Iron Ion And 2-Oxoglutarate Length = 238

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 13/149 (8%)
Query: 37  SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYS 96
           S V  +P  + ++++    + L   +PW + T      +  QPR T +       +L Y+
Sbjct: 40  SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYG-----ELPYT 94
Query: 97  GYR----PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLY 152
             R    P+P+    + P+   L   ++   G  FNSL  N Y+   D V WH+DDE   
Sbjct: 95  YSRITMEPNPH----WHPVLRTLKNRIEENTGHTFNSLXCNLYRNEKDSVDWHSDDEPSL 150
Query: 153 GSTPEIASVSFGCERDFLLKIKPSKSYQG 181
           G  P IAS+SFG  R F ++ KP     G
Sbjct: 151 GRCPIIASLSFGATRTFEMRKKPPPEENG 179
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
2iuw_A	238	Alkylated repair protein ALKB homolog 3; oxidoredu	3e-25
3s57_A	204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	2e-24
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	3e-13
3i3q_A	211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	3e-08

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238

 Score = 96.5 bits (239), Expect = 3e-25
 Identities = 43/181 (23%), Positives = 67/181 (37%), Gaps = 5/181 (2%)

Query: 2   SLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNR 61
                                 +    + +     S V  +P  + ++++    + L   
Sbjct: 5   HHHHHHSSGLVPRGSHMRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQD 64

Query: 62  IPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKV 121
           +PW + T      +  QPR T +          Y+  R        + P+   L   ++ 
Sbjct: 65  VPWKQRTGIREDITYQQPRLTAWYGELP-----YTYSRITMEPNPHWHPVLRTLKNRIEE 119

Query: 122 LPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQG 181
             G  FNSLL N Y+   D V WH+DDE   G  P IAS+SFG  R F ++ KP     G
Sbjct: 120 NTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENG 179

Query: 182 P 182
            
Sbjct: 180 D 180

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Length = 204

 Score = 93.7 bits (232), Expect = 2e-24
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 7/148 (4%)

Query: 38  EVIYFPRIIKMEDSWKFFDYLNNRIPW---NRPTIRVFGRSCLQPRDTCYVASEGVTQLI 94
               +  +    ++ + F  L   + +       ++VFG+    PR        G+T   
Sbjct: 11  LDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTY-T 69

Query: 95  YSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGS 154
           +SG    P  W    P+ + +   +  + G  FN +L+NRYK G+D++  H DDE+    
Sbjct: 70  FSGLTLSPKPW---IPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAP 126

Query: 155 TPEIASVSFGCERDFLLKIKPSKSYQGP 182
              IASVSFG  RDF+ + K S+     
Sbjct: 127 GSPIASVSFGASRDFVFRHKDSRGKSPS 154

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345

 Score = 65.6 bits (159), Expect = 3e-13
 Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 11/143 (7%)

Query: 39  VIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGY 98
           ++    II  E+       L   + W   T     +  L+ R   +           +  
Sbjct: 113 LMVVEEIISSEEE----KMLLESVDWTEDTDNQNSQKSLKHRRVKHFG--YEFHYENNNV 166

Query: 99  RP-HPYSWDDFPPLKDILDIVLKV-LPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTP 156
               P S       +  L+  L+      + + + +N+Y+ G   +  H D    +    
Sbjct: 167 DKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPG-QGIPAHIDTHSAFE--D 223

Query: 157 EIASVSFGCERDFLLKIKPSKSY 179
           EI S+S G E     K     + 
Sbjct: 224 EIVSLSLGSEIVMDFKHPDGIAV 246

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211

 Score = 50.4 bits (120), Expect = 3e-08
 Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 6/82 (7%)

Query: 95  YSGYRPHPYS-WDDFPP-LKDILDIVLKVL--PGSRFNSLLLNRYKGGNDYVGWHADDEK 150
           YS   P     W   P    ++          P  + ++ L+NRY  G         DE 
Sbjct: 68  YSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEP 127

Query: 151 LYGSTPEIASVSFGCERDFLLK 172
              +   I SVS G    F   
Sbjct: 128 DLRAP--IVSVSLGLPAIFQFG 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
3s57_A	204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	100.0
2iuw_A	238	Alkylated repair protein ALKB homolog 3; oxidoredu	99.98
3i3q_A	211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	99.93
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.92
3lfm_A	495	Protein FTO; FAT MASS and obesity associated (FTO)	99.6
2jig_A	224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	88.2
3dkq_A	243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	87.77
3itq_A	216	Prolyl 4-hydroxylase, alpha subunit domain protei;	83.76

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*

Probab=100.00  E-value=5.1e-36  Score=243.39  Aligned_cols=136  Identities=30%  Similarity=0.505  Sum_probs=123.9

Q ss_pred             cEEEeCCCCCHHHHHHHHHHHhhcCCC---CCceeeecCCcccccceeeEecCCCCcceeccCCCCCCCCCCCCchHHHH
Q 030096           38 EVIYFPRIIKMEDSWKFFDYLNNRIPW---NRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDI  114 (183)
Q Consensus        38 ~~~~~~~fl~~~~a~~L~~~L~~~~~w---~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~wp~~P~ll~l  114 (183)
                      -..++++||++++|+.||+.|.++++|   +|.++.||||.+.+||+++||++.+. .|+|+|..+.+.+||  |.|..+
T Consensus        11 ~~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~~gk~~~~pR~~~wyg~~~~-~Y~Ysg~~~~~~pwp--~~L~~l   87 (204)
T 3s57_A           11 LDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGL-TYTFSGLTLSPKPWI--PVLERI   87 (204)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEETTEEEECSSEEEEEECTTC-CEEETTEEECCEECC--HHHHHH
T ss_pred             ceEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEECCeEeccCcEEEEECCCCC-CcccCCCcccCCCCC--HHHHHH
Confidence            467799999999999999999999999   78899999999999999999999888 699999999899998  677776


Q ss_pred             HHHHHhhcCCCCCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEeeCCCC
Q 030096          115 LDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK  177 (183)
Q Consensus       115 ~~~~~e~~~g~~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~k~~~  177 (183)
                      . +.+++.++..||+||||+|++|.|+||||+|++..++.+++|||||||++|.|.|+++.++
T Consensus        88 ~-~~~~~~~g~~~n~~LvN~Y~~G~d~i~~H~D~~~~~~~~~~IasvSLG~~~~f~~~~~~~~  149 (204)
T 3s57_A           88 R-DHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR  149 (204)
T ss_dssp             H-HHHHHHHCCCCSEEEEEEESSTTCCEEEECCCCTTBCTTCCEEEEEEESCEEEEEEEGGGC
T ss_pred             H-HHHHHHhCCCCceeEEEEECCCCCcccceecChhhccCCCcEEEEECCCceEEEEEEcCCC
Confidence            4 4446678999999999999999889999999999999999999999999999999997644

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10

Probab=99.98  E-value=1.5e-32  Score=227.63  Aligned_cols=145  Identities=31%  Similarity=0.527  Sum_probs=125.2

Q ss_pred             ccceEEeCCCC-ccEEEeCCCCCHHHHHHHHHHHhhcCCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCCCC-
Q 030096           26 KQRMVVDLGNG-SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPY-  103 (183)
Q Consensus        26 ~~~~~~~l~~~-~~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~-  103 (183)
                      +..++..++.+ .++.|+++||++++++.||+.|.++++|++....+||+.+.++|+++||++  . .|.|+|....+. 
T Consensus        28 g~~~~~~~p~~i~gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~~g~~~~~~R~~~~~g~--~-~Y~Ys~~~~~~~p  104 (238)
T 2iuw_A           28 GVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGE--L-PYTYSRITMEPNP  104 (238)
T ss_dssp             EEEEEECCSSSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEECSSEEEEEEC--C-CTTSCHHHHCCBS
T ss_pred             cceeeecCCCCCCcEEEECCCCCHHHHHHHHHHHHHhCCCccCceecCCcccccCCeeEEcCC--C-ccccCCcccCCCC
Confidence            44555556653 369999999999999999999999999999998999999999999999995  3 599998877676 


Q ss_pred             CCCCCchHHHHHHHHHhhcCCCCCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEeeCCC
Q 030096          104 SWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPS  176 (183)
Q Consensus       104 ~wp~~P~ll~l~~~~~e~~~g~~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~k~~  176 (183)
                      +||  |.|..+...+ ++.++..||+||||+|++|+|+|+||+|++..++++++|||||||++|.|.|+++..
T Consensus       105 ~wp--~~l~~l~~~~-~~~~g~~~n~~LvN~Y~~G~d~i~~H~D~~~~~~~~~~IaslSLG~~~~f~f~~~~~  174 (238)
T 2iuw_A          105 HWH--PVLRTLKNRI-EENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPP  174 (238)
T ss_dssp             SCC--HHHHHHHHHH-HHHHSCCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC
T ss_pred             CCC--HHHHHHHHHH-HHHhCCCCCEEEEEEECCCCCceeCCcCChhhcCCCCcEEEEECCCCEEEEEeccCC
Confidence            798  5666654444 556688999999999999988999999999999999999999999999999999765

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...

Probab=99.93  E-value=1.2e-25  Score=183.28  Aligned_cols=134  Identities=19%  Similarity=0.276  Sum_probs=104.4

Q ss_pred             eCCCCccEEEeCCCCCHHHHHHHHHHHhhcCCCCCc--eeeecCCccccccee-----eEecCCCCcceeccCCC-CCCC
Q 030096           32 DLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRP--TIRVFGRSCLQPRDT-----CYVASEGVTQLIYSGYR-PHPY  103 (183)
Q Consensus        32 ~l~~~~~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~--~~~~~Gk~~~~pR~~-----~wy~~~~~~~Y~Ysg~~-~~~~  103 (183)
                      .|++  ++.++|+|+. +++++|++.|+ ++.|.++  ...+.|...+++|++     +||++..  .|+|+|.. +.+.
T Consensus         4 ~~~~--g~~~~~~~~~-~~~~~l~~~~~-~~~~~~p~~~~~~pgg~~~s~~~~~~g~~~W~~d~~--~Y~Ys~~~~~~~~   77 (211)
T 3i3q_A            4 PLAA--GAVILRRFAF-NAAEQLIRDIN-DVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQ--GYLYSPIDPQTNK   77 (211)
T ss_dssp             CCBT--TBEEETTTTT-TTHHHHHHHHH-HHHHHSCCBCCBCTTSCBCSSEEEEESSBEEEEETT--EEEEESBCTTTSS
T ss_pred             ecCC--CCEEECCcCh-HHHHHHHHHHH-HHHhcCCCceeEcCCCCcCchhhcccccceeecCCC--CcCcCCCccCCCC
Confidence            4555  4899999998 57889999985 4445443  334567788888998     8999874  69999988 6778


Q ss_pred             CCCCCch-HHHHHHHHHhhcCC---CCCcEEEEceeCCCCCCcccccc-CCCCcCCCCcEEEEEcCCceeeEEeeCC
Q 030096          104 SWDDFPP-LKDILDIVLKVLPG---SRFNSLLLNRYKGGNDYVGWHAD-DEKLYGSTPEIASVSFGCERDFLLKIKP  175 (183)
Q Consensus       104 ~wp~~P~-ll~l~~~~~e~~~g---~~fn~~LvN~Y~~G~d~ig~HsD-~e~~lg~~~~IasvSLGa~R~F~~r~k~  175 (183)
                      +|+++|. |.+++.++. +..+   ..+|+||||+|++|+ +|+||+| +|..++  ++|||||||++|.|.|+++.
T Consensus        78 pw~~~P~~L~~l~~~~~-~~~g~~~~~pn~~LvN~Y~~G~-~i~~H~D~~e~~~~--~pI~svSLG~~~~f~f~~~~  150 (211)
T 3i3q_A           78 PWPAMPQSFHNLCQRAA-TAAGYPDFQPDACLINRYAPGA-KLSLHQDKDEPDLR--APIVSVSLGLPAIFQFGGLK  150 (211)
T ss_dssp             BCCCCCHHHHHHHHHHH-HHTTCTTCCCCEEEEEEECTTC-CEEEECCCCCSCTT--SCEEEEEEESCEEEEECCSS
T ss_pred             CCCchHHHHHHHHHHHH-HhcCCCCcCCCEEEEEEEcCCC-CcccccCCCccccC--CCEEEEECCCCeEEEEeccc
Confidence            9997776 555544453 3344   356999999999985 9999999 787776  56999999999999999863

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.92  E-value=7.3e-25  Score=190.22  Aligned_cols=134  Identities=19%  Similarity=0.221  Sum_probs=86.1

Q ss_pred             cceEEeCCCCccEEEeCCCCCHHHHHHHHHHHhhcCCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCC-----
Q 030096           27 QRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPH-----  101 (183)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~-----  101 (183)
                      ...+..|++|  +.|+|+||++++++    .|.++++|.+..+.++|+.+..+|+++|||-    .|+|++..+.     
T Consensus       103 ~~~~~~lp~G--l~~~p~fis~~Ee~----~Ll~~i~w~~~~~~~~~~~~l~~Rr~~~yG~----~Y~Ys~~~~~~~~p~  172 (345)
T 3tht_A          103 ELRPQALPPG--LMVVEEIISSEEEK----MLLESVDWTEDTDNQNSQKSLKHRRVKHFGY----EFHYENNNVDKDKPL  172 (345)
T ss_dssp             EEECCSCCTT--EEEETTCSCHHHHH----HHHTTCC----------------CEEECCC--------------------
T ss_pred             ccccccCCCc--eEEEcCcCCHHHHH----HHHHhcccCCccccccCcccccCceEEEECC----cccccccccccCCCC
Confidence            3445677775  99999999999987    4567788999999999999999999999993    6999987765     


Q ss_pred             CCCCCCCchHHHHHHHHH-hhcCCCCCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEeeCC
Q 030096          102 PYSWDDFPPLKDILDIVL-KVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP  175 (183)
Q Consensus       102 ~~~wp~~P~ll~l~~~~~-e~~~g~~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~k~  175 (183)
                      +.+||  +.|..++.++. +...+..||+||||+|++| ++|+||+|++..++  ++|||||||++|.|.|+++.
T Consensus       173 p~~~P--~~L~~l~~r~~~~~~~~~~~n~~lvN~Y~~G-~~I~~H~D~~~~~~--~~I~slSLG~~~~f~f~~~~  242 (345)
T 3tht_A          173 SGGLP--DICESFLEKWLRKGYIKHKPDQMTINQYEPG-QGIPAHIDTHSAFE--DEIVSLSLGSEIVMDFKHPD  242 (345)
T ss_dssp             --CCC--HHHHHHHHHHHHHTSCSSCCSEEEEEEECTT-CCEEEECCCTTTBC--SCEEEEEESSCEEEEEECTT
T ss_pred             CcCcC--HHHHHHHHHHHhcccCCCCCCEEEEEEecCC-CCEeeccCCchhcC--CeEEEEECCCceeEEEccCC
Confidence            45676  45666655553 2356788999999999997 59999999988776  78999999999999999864

>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens}

Probab=99.60  E-value=8e-16  Score=135.71  Aligned_cols=118  Identities=22%  Similarity=0.325  Sum_probs=90.2

Q ss_pred             CCCCCHH---HHHHHHHHHhhcCCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCCCCCCCCC--------chH
Q 030096           43 PRIIKME---DSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDF--------PPL  111 (183)
Q Consensus        43 ~~fl~~~---~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~wp~~--------P~l  111 (183)
                      ++-|+.+   +.+++|+.|.++++|+|+.++||||.+.+||++||||+.+. .|+|||..+.+.||++-        |.+
T Consensus        44 a~slp~~LH~~vd~lF~~Ll~ei~WqQD~IrIfGK~v~tPRLtAWyGD~g~-tY~YSGi~l~p~PWTp~~~~~~~~~~~~  122 (495)
T 3lfm_A           44 ASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNPGC-TYKYLNTRLFTVPWPVKGSNIKHTEAEI  122 (495)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTTCCBCCEECGGGCCEECSSEEEEEESTTB-EEEETTEEEECEECCCC--------CHH
T ss_pred             cccCCHHHHHHHHHHHHHHHhcCCCCCCchhcCCceeccceeEEEecCCCC-ceecCCCcccCCCCCcccCcccccChhH
Confidence            3456654   68889999999999999999999999999999999999999 69999999999999841        222


Q ss_pred             HHHHHH--------------HHhhc-----------------------CC--------------CCCcEEEEceeCC---
Q 030096          112 KDILDI--------------VLKVL-----------------------PG--------------SRFNSLLLNRYKG---  137 (183)
Q Consensus       112 l~l~~~--------------~~e~~-----------------------~g--------------~~fn~~LvN~Y~~---  137 (183)
                      ...++.              +++++                       .|              ..||+.|||+.+.   
T Consensus       123 ~~a~~a~~~LNd~l~~~t~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~fNvTLlN~Mdp~~m  202 (495)
T 3lfm_A          123 AAACETFLKLNDYLQIETIQALEELAAKEKANEDAVPLCMSADFPRVGMGSSYNGQDEVDIKSRAAYNVTLLNFMDPQKM  202 (495)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------CHHHHHHHTCCCEEEEEEECSSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccCCCcccCCcccccccCcceeehhhhhccCcccc
Confidence            211110              11110                       01              2799999998654   


Q ss_pred             -----------CCCCccccccCCCCcCCCCcEEEEEc
Q 030096          138 -----------GNDYVGWHADDEKLYGSTPEIASVSF  163 (183)
Q Consensus       138 -----------G~d~ig~HsD~e~~lg~~~~IasvSL  163 (183)
                                 |+-+|+||+|...  ...++||+.|.
T Consensus       203 ~~LKeEpyfgMGKmaVsWHhDenL--~~~StVAVY~~  237 (495)
T 3lfm_A          203 PYLKEEPYFGMGKMAVSWHHDENL--VDRSAVAVYSY  237 (495)
T ss_dssp             SSCCBCSSSCCCBEEEEEECCCSB--CTTCCEEEEEE
T ss_pred             cccccccccCCcceeeeecccccc--ccCcceEEEEe
Confidence                       5667899999864  57889999885

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A

Probab=88.20  E-value=4.2  Score=31.87  Aligned_cols=98  Identities=12%  Similarity=0.088  Sum_probs=53.9

Q ss_pred             ceEEeCCCCccEEEeCCCCCHHHHHHHHHHHhhcCCCCCceeeec--CCccc-ccce--eeEecCCCCcceeccCCCCCC
Q 030096           28 RMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVF--GRSCL-QPRD--TCYVASEGVTQLIYSGYRPHP  102 (183)
Q Consensus        28 ~~~~~l~~~~~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~~~~~~--Gk~~~-~pR~--~~wy~~~~~~~Y~Ysg~~~~~  102 (183)
                      .+++.+.+  .+.++++||+++|++.|.+.+...  +.+..+.-.  |+... .-|.  .+|....              
T Consensus        13 ~e~ls~~P--~i~~~~~fLs~~Ec~~li~~~~~~--~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~--------------   74 (224)
T 2jig_A           13 VVHLSWSP--RAFLLKNFLSDEECDYIVEKARPK--MVKSSVVDNESGKSVDSEIRTSTGTWFAKG--------------   74 (224)
T ss_dssp             EEEEETTT--TEEEETTCSCHHHHHHHHHHHGGG--CEECEEEETTTTEEEECSSBCSEEEECCTT--------------
T ss_pred             eEEEeCCC--CEEEEcccCCHHHHHHHHHHhhcc--CeeeeeecCCCCcccccCCEEEeeeEecCC--------------
Confidence            34455544  699999999999999998887652  333332110  11110 0111  1122110              


Q ss_pred             CCCCCCchHHHHHHHHHhhcCCCC---CcEEEEceeCCCCCCccccccCC
Q 030096          103 YSWDDFPPLKDILDIVLKVLPGSR---FNSLLLNRYKGGNDYVGWHADDE  149 (183)
Q Consensus       103 ~~wp~~P~ll~l~~~~~e~~~g~~---fn~~LvN~Y~~G~d~ig~HsD~e  149 (183)
                          ..|.+..+..++ +..++..   .....+..|..| ..-.+|.|..
T Consensus        75 ----~~~~~~~i~~ri-~~~~gl~~~~~e~~qv~rY~~G-~~y~~H~D~~  118 (224)
T 2jig_A           75 ----EDSVISKIEKRV-AQVTMIPLENHEGLQVLHYHDG-QKYEPHYDYF  118 (224)
T ss_dssp             ----CSHHHHHHHHHH-HHHHTCCGGGBCCCEEEEEETT-CCEEEECCSS
T ss_pred             ----CCHHHHHHHHHH-HHHhCCCcccccceEEEecCCC-ccccCcccCC
Confidence                013444443333 4445543   334778899997 5789999964

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}

Probab=87.77  E-value=0.82  Score=37.19  Aligned_cols=36  Identities=14%  Similarity=0.225  Sum_probs=27.5

Q ss_pred             eCCCCccEEEeCCCCCHHHHHHHHHHHhhcCCCCCce
Q 030096           32 DLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPT   68 (183)
Q Consensus        32 ~l~~~~~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~~   68 (183)
                      .|--+..+..+++||+++|+++|.+.+ +..+|....
T Consensus        14 ~~~~~~~i~~i~dvLs~~Ec~~li~~~-e~~~~~dg~   49 (243)
T 3dkq_A           14 NLYFQGMLIEIPNVFSKQEVSHLREQL-DARRWIDGN   49 (243)
T ss_dssp             CCCCBTTBEEECCSSCHHHHHHHHHHH-HTSCCEEEC
T ss_pred             ccccCCCEEEECCCCCHHHHHHHHHHH-hhCCCccCc
Confidence            344455789999999999999998877 556786543

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}

Probab=83.76  E-value=5.6  Score=31.51  Aligned_cols=101  Identities=10%  Similarity=0.059  Sum_probs=56.3

Q ss_pred             ccceEEeCCCCccEEEeCCCCCHHHHHHHHHHHhhcCCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCCCCCC
Q 030096           26 KQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSW  105 (183)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~w  105 (183)
                      +.+.+..+.....+.++.+||+++|++.|.+.....  +++..+. .+....              .++-|...     |
T Consensus        28 r~v~v~~l~~~P~i~~~~~fLs~~Ec~~Li~~a~~~--l~~s~v~-~~~~~~--------------~~RtS~~~-----w   85 (216)
T 3itq_A           28 REIQIISKFEEPLIVVLGNVLSDEECDELIELSKSK--LARSKVG-SSRDVN--------------DIRTSSGA-----F   85 (216)
T ss_dssp             CEEEEEEEETTTTEEEEESCSCHHHHHHHHHHHHHH--HC---------CCC--------------CGGGTTCE-----E
T ss_pred             ceEEEEEeeCCCCEEEECCcCCHHHHHHHHHHhhcc--cccceec-cCCccC--------------CcEeeeeE-----E
Confidence            344555565555799999999999999998876543  3332221 010000              12222111     1


Q ss_pred             CC-CchHHHHHHHHHhhcCCCC---CcEEEEceeCCCCCCccccccCCC
Q 030096          106 DD-FPPLKDILDIVLKVLPGSR---FNSLLLNRYKGGNDYVGWHADDEK  150 (183)
Q Consensus       106 p~-~P~ll~l~~~~~e~~~g~~---fn~~LvN~Y~~G~d~ig~HsD~e~  150 (183)
                      -. .|.+..+.+++ ...+|..   ....-+..|..| ..-.+|.|...
T Consensus        86 l~~~~~v~~i~~Ri-~~~~gl~~~~~E~lqv~~Y~~G-~~y~~H~D~~~  132 (216)
T 3itq_A           86 LDDNELTAKIEKRI-SSIMNVPASHGEGLHILNYEVD-QQYKAHYDYFA  132 (216)
T ss_dssp             CCCCHHHHHHHHHH-HHHHTSCGGGBCCCEEEEECBT-CCEEEECSSCC
T ss_pred             eCCcHHHHHHHHHH-HHhcCceeccccceeEEEeCCC-CccccccCCCc
Confidence            11 13454444444 4466654   234678889997 57799999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d2iuwa1	210	b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s	4e-20
d2fdia1	200	b.82.2.10 (A:15-214) Alkylated DNA repair protein	5e-06

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (200), Expect = 4e-20
 Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 5/146 (3%)

Query: 37  SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYS 96
           S V  +P  + ++++    + L   +PW + T      +  QPR T +          Y+
Sbjct: 19  SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELP-----YT 73

Query: 97  GYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTP 156
             R        + P+   L   ++   G  FNSLL N Y+   D V WH+DDE   G  P
Sbjct: 74  YSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCP 133

Query: 157 EIASVSFGCERDFLLKIKPSKSYQGP 182
            IAS+SFG  R F ++ KP     G 
Sbjct: 134 IIASLSFGATRTFEMRKKPPPEENGD 159

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score = 42.8 bits (100), Expect = 5e-06
 Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 9/84 (10%)

Query: 95  YSGYRPHPYSWDDFPPLKDILDIVLKVL---------PGSRFNSLLLNRYKGGNDYVGWH 145
             GY   P       P   +      +          P  + ++ L+NRY  G       
Sbjct: 59  RQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQ 118

Query: 146 ADDEKLYGSTPEIASVSFGCERDF 169
             DE    +     S+       F
Sbjct: 119 DKDEPDLRAPIVSVSLGLPAIFQF 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d2iuwa1	210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	99.96
d2fdia1	200	Alkylated DNA repair protein AlkB {Escherichia col	99.85

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-30  Score=207.02  Aligned_cols=146  Identities=30%  Similarity=0.491  Sum_probs=122.8

Q ss_pred             cceEEeCCCC-ccEEEeCCCCCHHHHHHHHHHHhhcCCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCC-CCC
Q 030096           27 QRMVVDLGNG-SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPH-PYS  104 (183)
Q Consensus        27 ~~~~~~l~~~-~~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~-~~~  104 (183)
                      ...+-..+.| +++.|+|+||++++++.||+.|.++++|++..++++|+.+..||+++|+++.   .|.|++.... ..+
T Consensus         8 ~~~~~~~p~g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~~g~~~~~pR~~~~~~d~---~y~y~~~~~~~~~~   84 (210)
T d2iuwa1           8 VYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGEL---PYTYSRITMEPNPH   84 (210)
T ss_dssp             EEEEECCSSSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEECSSEEEEEECC---CTTSCHHHHCCBSS
T ss_pred             ceEeccCCCCcceEEEECCcCCHHHHHHHHHHHHhhCCccccceeccCcccceeeeeEEecCc---CccccccccccCCC
Confidence            3344444444 4799999999999999999999999999999999999999999999999874   4788876544 356


Q ss_pred             CCCCchHHHHHHHHHhhcCCCCCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEeeCCCCC
Q 030096          105 WDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKS  178 (183)
Q Consensus       105 wp~~P~ll~l~~~~~e~~~g~~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~k~~~~  178 (183)
                      |+  |.|..+...+ ++.++..+|.|+||+|.+|+++||||+|++..++++++|||||||++|.|.||++..+.
T Consensus        85 ~~--~~l~~l~~~~-~~~~~~~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~~  155 (210)
T d2iuwa1          85 WH--PVLRTLKNRI-EENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPE  155 (210)
T ss_dssp             CC--HHHHHHHHHH-HHHHSCCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC--
T ss_pred             Cc--HHHHHHHHhh-hhhcCccchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEccccccc
Confidence            87  5666665444 55678899999999999999999999999999999999999999999999999876554

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5.1e-21  Score=152.74  Aligned_cols=136  Identities=18%  Similarity=0.271  Sum_probs=98.8

Q ss_pred             CCCCccEEEeCCCCCHHHHHHHHHHHhh---cCCCCCceeeecCCccccccee----eEecCCCCcceeccCCCC-CCCC
Q 030096           33 LGNGSEVIYFPRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQPRDT----CYVASEGVTQLIYSGYRP-HPYS  104 (183)
Q Consensus        33 l~~~~~~~~~~~fl~~~~a~~L~~~L~~---~~~w~~~~~~~~Gk~~~~pR~~----~wy~~~~~~~Y~Ysg~~~-~~~~  104 (183)
                      |++|  +.++++|+.++ +.+|++.+.+   ..+|++.+.. .|+.+......    +|+++..  .|+|++... ...+
T Consensus         1 lapG--~v~l~~f~~~~-~~~ll~~~~~~~~~~p~r~~~~p-~g~~msv~~~~~g~~gW~~d~~--~Yry~~~~~~~~~~   74 (200)
T d2fdia1           1 LAAG--AVILRRFAFNA-AEQLIRDINDVASQSPFRQMVTP-GGYTMSVAMTNCGHLGWTTHRQ--GYLYSPIDPQTNKP   74 (200)
T ss_dssp             CCTT--EEEETTTTTTT-HHHHHHHHHHHHHHSCCBCCBCT-TSCBCSSEEEEESSBEEEEETT--EEEEESBCTTTSSB
T ss_pred             CCCC--EEEECCcCCHH-HHHHHHHHHHHHhhCCceeeecC-CCCcceEEEEeccccccccCCc--CcccccccCCCCCC
Confidence            4454  88899998754 5567777654   5799886554 47777664433    4999865  699998764 4578


Q ss_pred             CCCCch-HHHHHHHHHhh--cCCCCCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEeeCCC
Q 030096          105 WDDFPP-LKDILDIVLKV--LPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPS  176 (183)
Q Consensus       105 wp~~P~-ll~l~~~~~e~--~~g~~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~k~~  176 (183)
                      ||++|. |.+++.++.+.  ..+..||+||||+|++|++.++||.|+|..++  .+|+|||||++|.|+|+++..
T Consensus        75 wp~iP~~l~~L~~~~~~~~~~~~~~pn~~LvN~Y~~G~~~~~h~dddE~~~~--~pIvslSLG~~~~f~f~~~~~  147 (200)
T d2fdia1          75 WPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLR--APIVSVSLGLPAIFQFGGLKR  147 (200)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCTTCCCSEEEEEEECTTCCEEEECCCCSSCTT--SCEEEEEEESCEEEEECCSST
T ss_pred             CCCccHHHHHHHHHHHHHcCCCccCCCeeEEEEecCCCCccccccCCccccC--CCceEEEEeCCeeEEeccccc
Confidence            998775 55565555432  23467999999999998654556777888764  579999999999999987643