Citrus Sinensis ID: 030116

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MEVRPNPTVENLRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEGCIHMFSLSPVYYHFFL
Secondary Structure (PSIPRED)
cccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEcccccEEEEEEEEccccccccccEEEEEEEccccccccccEEEEEcccccccccccccEEEEcccccccHHHcHHHHHHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEcccccEccEccccEEccHHHcccccccccHHHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mevrpnptvenlrataaasskqpvsspntvdtTSVTQRLQKELMSLMMsggdlgvsafpegesiFTWIgtieggkgtmyEGLSYklslrfpldypfkppqvkfetmcfhpnvdqygnICLDILqdkwssaydCRTILLSIQSllgepnpesplNSYAAALLNNKegcihmfslspvyyhffl
Flexible Loop (DISEMBL)
mevrpnptvenlrataaasskqpvsspntvdttsVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEGCIHMFSLSPVYYHFFL
Low Complexity Region (SEG)
MEVRPNPTVENLRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEGCIHMFSLSPVYYHFFL
Disordered region (IsUnstruct)
**************************************************GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLG*******LNSYAAALLNNKEGCIHMFSLSPVYYHFF*
Disordered Region (DISOPRED)
*****************************************ELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEGCIHMFSLSPVYYHFFL
Disordered Region (DISEMBL)
***********************************TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEGCIHMFSLSPVYYHFFL
Disordered Region (DISPRO)
*********************************SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEGCIHMFSLSPVYYHFFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVRPNPTVENLRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEGCIHMFSLSPVYYHFFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
Q9LJZ5	181	Ubiquitin-conjugating enz	yes	no	0.796	0.801	0.691	1e-51
Q54XS6	153	Probable ubiquitin-conjug	yes	no	0.719	0.856	0.674	7e-50
P56616	179	Ubiquitin-conjugating enz	N/A	no	0.824	0.837	0.622	1e-49
Q8L7T3	180	Ubiquitin-conjugating enz	no	no	0.818	0.827	0.693	1e-48
O00762	179	Ubiquitin-conjugating enz	yes	no	0.818	0.832	0.593	9e-47
Q4R9D1	179	Ubiquitin-conjugating enz	N/A	no	0.818	0.832	0.593	1e-46
Q32PA5	179	Ubiquitin-conjugating enz	yes	no	0.818	0.832	0.593	1e-46
Q95044	177	Ubiquitin-conjugating enz	N/A	no	0.824	0.847	0.549	7e-46
Q9D1C1	179	Ubiquitin-conjugating enz	yes	no	0.703	0.715	0.666	3e-45
Q9VTY6	178	Ubiquitin-conjugating enz	yes	no	0.796	0.814	0.595	4e-45

>sp|Q9LJZ5|UBC19_ARATH Ubiquitin-conjugating enzyme E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1

 Score =  202 bits (513), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/146 (69%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 20  SKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMY 79
           SKQ      TVD+ SV +RLQ ELM LMM G D G+SAFPE ++IF W GTI G K T++
Sbjct: 22  SKQSAPPTKTVDSHSVLKRLQSELMGLMM-GADPGISAFPEEDNIFCWKGTITGSKDTVF 80

Query: 80  EGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLS 139
           EG  Y+LSL F  DYPFK P+VKFET CFHPNVD YGNICLDILQDKWSSAYD RTILLS
Sbjct: 81  EGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLS 140

Query: 140 IQSLLGEPNPESPLNSYAAALLNNKE 165
           IQSLLGEPN  SPLN+ AA L +N+E
Sbjct: 141 IQSLLGEPNISSPLNNQAAQLWSNQE 166

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Part of the anaphase-promoting complex (APC). May have a key function during cell cycle and be involved in cyclin B1 degradation.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|Q54XS6|UBE2C_DICDI Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1

 Score =  196 bits (498), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 89/132 (67%), Positives = 112/132 (84%), Gaps = 1/132 (0%)

Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           SV++RLQ ELM+LMM G   G+SAFP+G++IF WIGTI+G K T+YE + +K+SL+FP D
Sbjct: 6   SVSKRLQSELMNLMM-GPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTD 64

Query: 94  YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           YP+KPP VKFET CFHPNVD  GNICLDIL+DKWS  Y+ R++L+SIQSLLGEPN ESPL
Sbjct: 65  YPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPL 124

Query: 154 NSYAAALLNNKE 165
           NSYAA+L +N++
Sbjct: 125 NSYAASLWSNQD 136

Catalyzes the covalent attachment of ubiquitin to other proteins. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by initiating polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P56616|UBE2C_XENLA Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1

 Score =  195 bits (496), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/151 (62%), Positives = 115/151 (76%), Gaps = 1/151 (0%)

Query: 14  ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG 73
           A ++ +S++   S  +    SV +RLQ+ELM+LMMSG D G+SAFPE +++F WIGTI+G
Sbjct: 10  AASSVASRKGQESGTSAARGSVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWIGTIDG 68

Query: 74  GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
             GT+YE L YKLSL FP  YP+  P VKF T CFHPNVD +GNICLDIL+DKWS+ YD 
Sbjct: 69  AVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDV 128

Query: 134 RTILLSIQSLLGEPNPESPLNSYAAALLNNK 164
           RTILLS+QSLLGEPN ESPLN YAA L  N+
Sbjct: 129 RTILLSLQSLLGEPNNESPLNPYAAELWQNQ 159

Catalyzes the covalent attachment of ubiquitin to other proteins. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by initiating 'Lys-11'-linked polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q8L7T3|UBC20_ARATH Ubiquitin-conjugating enzyme E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1

 Score =  192 bits (487), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/150 (69%), Positives = 118/150 (78%), Gaps = 1/150 (0%)

Query: 16  AAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGK 75
           A+  SKQP +   TVD+ SV +RLQ ELM LMM GG  G+SAFPE ++IF W GTI G K
Sbjct: 17  ASNGSKQPAAPTKTVDSQSVLKRLQSELMGLMMGGG-PGISAFPEEDNIFCWKGTITGSK 75

Query: 76  GTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
            T++EG  Y+LSL F  DYPFKPP+VKFET CFHPNVD YGNICLDILQDKWSSAYD RT
Sbjct: 76  DTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRT 135

Query: 136 ILLSIQSLLGEPNPESPLNSYAAALLNNKE 165
           ILLSIQSLLGEPN  SPLN+ AA L +N+E
Sbjct: 136 ILLSIQSLLGEPNISSPLNTQAAQLWSNQE 165

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|O00762|UBE2C_HUMAN Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1

 Score =  186 bits (471), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 111/150 (74%), Gaps = 1/150 (0%)

Query: 14  ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG 73
           AT+ A++++            V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G
Sbjct: 10  ATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHG 68

Query: 74  GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
             GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL++KWS+ YD 
Sbjct: 69  AAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDV 128

Query: 134 RTILLSIQSLLGEPNPESPLNSYAAALLNN 163
           RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct: 129 RTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitination. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by initiating 'Lys-11'-linked polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q4R9D1|UBE2C_MACFA Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1

 Score =  186 bits (471), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 110/150 (73%), Gaps = 1/150 (0%)

Query: 14  ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG 73
           AT+  ++++            V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G
Sbjct: 10  ATSVTAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHG 68

Query: 74  GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
             GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD 
Sbjct: 69  AAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDV 128

Query: 134 RTILLSIQSLLGEPNPESPLNSYAAALLNN 163
           RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct: 129 RTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitination. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by initiating 'Lys-11'-linked polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q32PA5|UBE2C_BOVIN Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1

 Score =  186 bits (471), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 110/150 (73%), Gaps = 1/150 (0%)

Query: 14  ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG 73
           A + A++++            V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G
Sbjct: 10  AASVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHG 68

Query: 74  GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
             GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD 
Sbjct: 69  AAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDV 128

Query: 134 RTILLSIQSLLGEPNPESPLNSYAAALLNN 163
           RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct: 129 RTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitination. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by initiating 'Lys-11'-linked polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q95044|UBE2C_SPISO Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1

 Score =  183 bits (464), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 83/151 (54%), Positives = 115/151 (76%), Gaps = 1/151 (0%)

Query: 14  ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG 73
           A      ++P     + +  SV++RLQ+EL +L+MSG D G++AFP+G+++F W+ T++G
Sbjct: 10  ANQVRQKERPRDMTTSKERHSVSKRLQQELRTLLMSG-DPGITAFPDGDNLFKWVATLDG 68

Query: 74  GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
            K T+YE L YKL+L FP DYP+KPP VKF T C+HPNVDQ GNICLDIL++ W+++YD 
Sbjct: 69  PKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDV 128

Query: 134 RTILLSIQSLLGEPNPESPLNSYAAALLNNK 164
           RTILLS+QSLLGEPN  SPLN+ AA + +N+
Sbjct: 129 RTILLSLQSLLGEPNNASPLNAQAADMWSNQ 159

Catalyzes the covalent attachment of ubiquitin to other proteins. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that is essential for the transition from metaphase to anaphase in mitosis. Involved in both degradation of proteins responsible for maintaining sister chromatid cohesion at the onset of anaphase and of mitotic cyclins A and B at the exit of mitosis. Acts by initiating polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Spisula solidissima (taxid: 6584)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9D1C1|UBE2C_MOUSE Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1

 Score =  181 bits (458), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/129 (66%), Positives = 101/129 (78%), Gaps = 1/129 (0%)

Query: 35  VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           V +RLQ+ELM LM SG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  Y
Sbjct: 31  VGKRLQQELMILMTSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 89

Query: 95  PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
           P+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN
Sbjct: 90  PYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLN 149

Query: 155 SYAAALLNN 163
           ++AA L  N
Sbjct: 150 THAAELWKN 158

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitination. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by initiating 'Lys-11'-linked polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9VTY6|UBE2C_DROME Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1

 Score =  180 bits (457), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/146 (59%), Positives = 109/146 (74%), Gaps = 1/146 (0%)

Query: 20  SKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMY 79
           SK    S    D  +V++RL KELM+LMM+  + G+SAFP+GE+IF W+GTI G + T+Y
Sbjct: 18  SKHSDDSMPVKDNHAVSKRLHKELMNLMMAN-ERGISAFPDGENIFKWVGTIAGPRNTVY 76

Query: 80  EGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLS 139
            G +Y+LSL FP  YP+  P VKF T CFHPNVD  G ICLDIL+DKWS+ YD RTILLS
Sbjct: 77  SGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLS 136

Query: 140 IQSLLGEPNPESPLNSYAAALLNNKE 165
           IQSLLGEPN ESPLN+ AA + N+++
Sbjct: 137 IQSLLGEPNNESPLNAQAAMMWNDQK 162

Catalyzes the covalent attachment of ubiquitin to other proteins. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by initiating polyubiquitin chains on APC/C substrates, leading to the degradation of APC/C substrates by the proteasome and promoting mitotic exit.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
255585082	188	ubiquitin-conjugating enzyme E2 C, putat	0.906	0.877	0.852	9e-80
224109742	187	predicted protein [Populus trichocarpa]	0.906	0.882	0.840	3e-77
224100801	187	predicted protein [Populus trichocarpa]	0.906	0.882	0.840	7e-77
449449354	188	PREDICTED: ubiquitin-conjugating enzyme	0.906	0.877	0.823	3e-76
356535652	186	PREDICTED: ubiquitin-conjugating enzyme	0.928	0.908	0.821	3e-76
356576213	186	PREDICTED: ubiquitin-conjugating enzyme	0.934	0.913	0.809	8e-76
225449088	190	PREDICTED: ubiquitin-conjugating enzyme	0.934	0.894	0.774	2e-72
357443331	192	Ubiquitin carrier protein [Medicago trun	0.934	0.885	0.751	1e-69
346465111	159	hypothetical protein [Amblyomma maculatu	0.736	0.842	0.859	2e-61
294461430	182	unknown [Picea sitchensis]	0.895	0.895	0.696	4e-61

>gi|255585082|ref|XP_002533247.1| ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis] gi|223526927|gb|EEF29132.1| ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]

 Score =  301 bits (770), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 145/170 (85%), Positives = 155/170 (91%), Gaps = 5/170 (2%)

Query: 1   MEVRPNPTVEN-----LRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGV 55
           ME+RPNPTV+N       A +A  SKQP ++PN VDTTSV+QRLQKELMSLMMSGGDLGV
Sbjct: 1   MEMRPNPTVDNSQLHRRHAPSATPSKQPAATPNPVDTTSVSQRLQKELMSLMMSGGDLGV 60

Query: 56  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 115
           SAFPEGESIFTWIGTIEGGKGT YEGLSYKLSLRFPLDYPFKPPQVKFET CFHPNVDQ+
Sbjct: 61  SAFPEGESIFTWIGTIEGGKGTAYEGLSYKLSLRFPLDYPFKPPQVKFETNCFHPNVDQF 120

Query: 116 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 165
           GNICLDILQ+KWSSAYDCRTILLSIQSLLGEPNP+SPL+SYAA LLNNKE
Sbjct: 121 GNICLDILQEKWSSAYDCRTILLSIQSLLGEPNPDSPLDSYAAKLLNNKE 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109742|ref|XP_002315296.1| predicted protein [Populus trichocarpa] gi|222864336|gb|EEF01467.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 142/169 (84%), Positives = 150/169 (88%), Gaps = 4/169 (2%)

Query: 1   MEVRPNPTVEN----LRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVS 56
           MEVRPN TV+N     R   A  SKQPV  PNTV+TTSV+QRLQKELMSLMM GGDLGVS
Sbjct: 1   MEVRPNETVDNSTQYRRHVPATPSKQPVVPPNTVETTSVSQRLQKELMSLMMIGGDLGVS 60

Query: 57  AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 116
           AFPEGESIF WIGTI GG+GT YEGLSYKLSLRFPLDYPFKPPQ+KFETMCFHPNVDQ+G
Sbjct: 61  AFPEGESIFAWIGTIAGGEGTAYEGLSYKLSLRFPLDYPFKPPQIKFETMCFHPNVDQFG 120

Query: 117 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 165
           NICLDILQDKWSSAYDCRTILLSIQSLLGEPNP+SPLNSYAA L +NKE
Sbjct: 121 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPDSPLNSYAAELWSNKE 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100801|ref|XP_002312020.1| predicted protein [Populus trichocarpa] gi|222851840|gb|EEE89387.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 142/169 (84%), Positives = 149/169 (88%), Gaps = 4/169 (2%)

Query: 1   MEVRPNPTVEN----LRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVS 56
           MEVRPN TV+N     R   A  SKQPV+  NTVDT SV+QRLQKELMSLMM GGDLGVS
Sbjct: 1   MEVRPNQTVDNSPQHRRHVPATPSKQPVAPSNTVDTASVSQRLQKELMSLMMIGGDLGVS 60

Query: 57  AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 116
           AFPEGESIF WIGTI GGKGT YEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ+G
Sbjct: 61  AFPEGESIFAWIGTIMGGKGTAYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQFG 120

Query: 117 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 165
           NICLDILQDKWSSAYDCRTILLSIQSLLGEPNP+SPLN+YAA L NN+E
Sbjct: 121 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPDSPLNNYAAKLWNNEE 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449354|ref|XP_004142430.1| PREDICTED: ubiquitin-conjugating enzyme E2 19-like [Cucumis sativus] gi|449487188|ref|XP_004157522.1| PREDICTED: ubiquitin-conjugating enzyme E2 19-like [Cucumis sativus]

 Score =  289 bits (740), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 140/170 (82%), Positives = 150/170 (88%), Gaps = 5/170 (2%)

Query: 1   MEVRPNPTVENLRATA-----AASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGV 55
           MEVRPNPT EN   +      ++S KQP +S N +D+ +V QRLQKELMSLMMSGGDLGV
Sbjct: 1   MEVRPNPTPENSSMSQHHHLISSSLKQPAASSNPIDSNAVAQRLQKELMSLMMSGGDLGV 60

Query: 56  SAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 115
           SAFP+GESIFTWIGTIEGGKGT YEGLSYKLSL FP++YPFKPP VKFETMCFHPNVDQY
Sbjct: 61  SAFPDGESIFTWIGTIEGGKGTSYEGLSYKLSLHFPMEYPFKPPLVKFETMCFHPNVDQY 120

Query: 116 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 165
           GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL NNKE
Sbjct: 121 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALWNNKE 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535652|ref|XP_003536358.1| PREDICTED: ubiquitin-conjugating enzyme E2 19-like [Glycine max]

 Score =  289 bits (740), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 143/174 (82%), Positives = 152/174 (87%), Gaps = 5/174 (2%)

Query: 1   MEVRPNPTVEN----LRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVS 56
           MEVR NP  +N    LR   A SSKQP+ SP  VDT++V+QRLQKELM+LMMSGGDLGVS
Sbjct: 1   MEVRSNPAADNSSDHLRP-PAVSSKQPLPSPTAVDTSAVSQRLQKELMALMMSGGDLGVS 59

Query: 57  AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 116
           AFP+GESIFTWIGTIEGGKGT YEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ+G
Sbjct: 60  AFPDGESIFTWIGTIEGGKGTQYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQFG 119

Query: 117 NICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEGCIHM 170
           NICLDILQDKWSSAYDCRTILLSIQSLL EPN ESPLNSYAAAL N+KE    M
Sbjct: 120 NICLDILQDKWSSAYDCRTILLSIQSLLEEPNLESPLNSYAAALWNDKEDYRRM 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576213|ref|XP_003556228.1| PREDICTED: ubiquitin-conjugating enzyme E2 19-like [Glycine max]

 Score =  288 bits (736), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 140/173 (80%), Positives = 151/173 (87%), Gaps = 3/173 (1%)

Query: 1   MEVRPNPTVEN---LRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSA 57
           MEVR NP  +N    R   A SS QP+ SPN VDT++V+QRLQKELM+LMMSGGDLGVSA
Sbjct: 1   MEVRSNPAADNSSDHRRPPAVSSMQPLPSPNPVDTSAVSQRLQKELMTLMMSGGDLGVSA 60

Query: 58  FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           FP+GESIFTWIGTIEGGKGT+YEGLSYKLSLRFPLDYPFK PQVKFETMCFHPN+DQ+GN
Sbjct: 61  FPDGESIFTWIGTIEGGKGTLYEGLSYKLSLRFPLDYPFKAPQVKFETMCFHPNIDQFGN 120

Query: 118 ICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEGCIHM 170
           ICLDILQDKWSSAYDCRTILLSIQSLL EPN ESPLNSYAAAL N+KE    M
Sbjct: 121 ICLDILQDKWSSAYDCRTILLSIQSLLEEPNLESPLNSYAAALWNDKEDYRRM 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449088|ref|XP_002275915.1| PREDICTED: ubiquitin-conjugating enzyme E2 19 [Vitis vinifera] gi|147800943|emb|CAN75562.1| hypothetical protein VITISV_032578 [Vitis vinifera] gi|296086039|emb|CBI31480.3| unnamed protein product [Vitis vinifera]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 137/177 (77%), Positives = 150/177 (84%), Gaps = 7/177 (3%)

Query: 1   MEVRPNPTVEN-------LRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDL 53
           MEVRPNP  +N            AA SKQ  ++PN VDT+SV+QRLQKELM+LMMSGGDL
Sbjct: 1   MEVRPNPVDDNSSIPQQHQHHAHAAPSKQLKAAPNPVDTSSVSQRLQKELMALMMSGGDL 60

Query: 54  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113
           GVSAFPE ESIFTWIGTI GG GT+YEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN+D
Sbjct: 61  GVSAFPESESIFTWIGTIMGGNGTVYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNID 120

Query: 114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEGCIHM 170
           Q+GNICLDILQDKWSSAYDC+T+LLSIQSLLGEPN ESPLNSYAA+L NN+E    M
Sbjct: 121 QFGNICLDILQDKWSSAYDCKTVLLSIQSLLGEPNIESPLNSYAASLWNNQEDYRKM 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443331|ref|XP_003591943.1| Ubiquitin carrier protein [Medicago truncatula] gi|355480991|gb|AES62194.1| Ubiquitin carrier protein [Medicago truncatula] gi|388521425|gb|AFK48774.1| unknown [Medicago truncatula]

 Score =  267 bits (682), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 133/177 (75%), Positives = 146/177 (82%), Gaps = 7/177 (3%)

Query: 1   MEVRPNPTVENLRATAAA-------SSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDL 53
           MEVR N T E      +A       SSK+P++SP   DTTSV+QRLQKELM+LMMSGGDL
Sbjct: 1   MEVRSNTTAEENSPVESAASRHRRSSSKKPLASPLPADTTSVSQRLQKELMALMMSGGDL 60

Query: 54  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113
           GVSAFP+GE+IFTWIGTIEGGKGT YEGLSYKLSL FP +YPFKPPQVKFET CFHPNVD
Sbjct: 61  GVSAFPDGENIFTWIGTIEGGKGTPYEGLSYKLSLHFPPNYPFKPPQVKFETTCFHPNVD 120

Query: 114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEGCIHM 170
           Q+GNICLDILQDKWSSAYDCRT+LLSIQSLL EPN ESPLN+YAA L N+KE    M
Sbjct: 121 QFGNICLDILQDKWSSAYDCRTMLLSIQSLLEEPNLESPLNNYAAELWNDKEDFKRM 177

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346465111|gb|AEO32400.1| hypothetical protein [Amblyomma maculatum]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 124/135 (91%), Gaps = 1/135 (0%)

Query: 28  NTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLS 87
           N VD+TSV+QRLQKELMSLMMSG D GVSAFPEGE+IF+W+GTI GGKGT YEGL YKLS
Sbjct: 26  NPVDSTSVSQRLQKELMSLMMSGSD-GVSAFPEGENIFSWVGTIVGGKGTPYEGLPYKLS 84

Query: 88  LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEP 147
           LRFPLDYPFKPPQVKFET CFHPNVDQYG+ICLDILQD WSSAYDCRT+LLSIQSLLGEP
Sbjct: 85  LRFPLDYPFKPPQVKFETPCFHPNVDQYGHICLDILQDMWSSAYDCRTVLLSIQSLLGEP 144

Query: 148 NPESPLNSYAAALLN 162
           N +SPLNSYAA L N
Sbjct: 145 NVDSPLNSYAATLWN 159

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|294461430|gb|ADE76276.1| unknown [Picea sitchensis]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 115/165 (69%), Positives = 138/165 (83%), Gaps = 2/165 (1%)

Query: 1   MEVRPNPTVENLRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPE 60
           MEVR  P  +       +++KQ  S   T+D+ +V++RLQ ELM+LMMSG D G+SAFPE
Sbjct: 1   MEVRGAPGNQT-NTPIMSNTKQTQSLSKTMDSRAVSRRLQSELMALMMSG-DPGISAFPE 58

Query: 61  GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICL 120
            +++F+W+GTI GGK T+YEGLSYKLSLRFP+DYPFKPPQVKFET CFHPNVDQYGNICL
Sbjct: 59  SDNMFSWVGTINGGKDTVYEGLSYKLSLRFPVDYPFKPPQVKFETACFHPNVDQYGNICL 118

Query: 121 DILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 165
           DILQDKWSSAY+ RT+LLSIQSLLGEPN ESPLNS+AAA+ NN+E
Sbjct: 119 DILQDKWSSAYEVRTVLLSIQSLLGEPNNESPLNSHAAAIWNNQE 163

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2015819	180	UBC20 "AT1G50490" [Arabidopsis	0.818	0.827	0.693	1.9e-51
TAIR|locus:2087620	181	UBC19 "AT3G20060" [Arabidopsis	0.818	0.823	0.686	9.5e-50
DICTYBASE|DDB_G0278775	153	ube2c "ubiquitin-conjugating e	0.719	0.856	0.674	4.2e-47
UNIPROTKB|P56616	179	ube2c "Ubiquitin-conjugating e	0.846	0.860	0.617	1.1e-46
ZFIN|ZDB-GENE-051030-48	354	ube2c "ubiquitin-conjugating e	0.851	0.437	0.592	1e-45
UNIPROTKB|O00762	179	UBE2C "Ubiquitin-conjugating e	0.818	0.832	0.593	6.4e-44
UNIPROTKB|Q4R9D1	179	UBE2C "Ubiquitin-conjugating e	0.818	0.832	0.593	6.4e-44
RGD|1305382	179	Ube2c "ubiquitin-conjugating e	0.703	0.715	0.682	6.4e-44
UNIPROTKB|Q32PA5	179	UBE2C "Ubiquitin-conjugating e	0.818	0.832	0.593	8.1e-44
UNIPROTKB|E2RN95	179	UBE2C "Uncharacterized protein	0.818	0.832	0.593	8.1e-44

TAIR|locus:2015819 UBC20 "AT1G50490" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 104/150 (69%), Positives = 118/150 (78%)

Query:    16 AAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGK 75
             A+  SKQP +   TVD+ SV +RLQ ELM LMM GG  G+SAFPE ++IF W GTI G K
Sbjct:    17 ASNGSKQPAAPTKTVDSQSVLKRLQSELMGLMMGGGP-GISAFPEEDNIFCWKGTITGSK 75

Query:    76 GTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
              T++EG  Y+LSL F  DYPFKPP+VKFET CFHPNVD YGNICLDILQDKWSSAYD RT
Sbjct:    76 DTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRT 135

Query:   136 ILLSIQSLLGEPNPESPLNSYAAALLNNKE 165
             ILLSIQSLLGEPN  SPLN+ AA L +N+E
Sbjct:   136 ILLSIQSLLGEPNISSPLNTQAAQLWSNQE 165

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEP;RCA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2087620 UBC19 "AT3G20060" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 103/150 (68%), Positives = 115/150 (76%)

Query:    16 AAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGK 75
             AA  SKQ      TVD+ SV +RLQ ELM LMM G D G+SAFPE ++IF W GTI G K
Sbjct:    18 AATGSKQSAPPTKTVDSHSVLKRLQSELMGLMM-GADPGISAFPEEDNIFCWKGTITGSK 76

Query:    76 GTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRT 135
              T++EG  Y+LSL F  DYPFK P+VKFET CFHPNVD YGNICLDILQDKWSSAYD RT
Sbjct:    77 DTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRT 136

Query:   136 ILLSIQSLLGEPNPESPLNSYAAALLNNKE 165
             ILLSIQSLLGEPN  SPLN+ AA L +N+E
Sbjct:   137 ILLSIQSLLGEPNISSPLNNQAAQLWSNQE 166

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008283 "cell proliferation" evidence=IEP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

DICTYBASE|DDB_G0278775 ube2c "ubiquitin-conjugating enzyme E2" [Dictyostelium discoideum (taxid:44689)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 89/132 (67%), Positives = 112/132 (84%)

Query:    34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
             SV++RLQ ELM+LMM G   G+SAFP+G++IF WIGTI+G K T+YE + +K+SL+FP D
Sbjct:     6 SVSKRLQSELMNLMM-GPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTD 64

Query:    94 YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
             YP+KPP VKFET CFHPNVD  GNICLDIL+DKWS  Y+ R++L+SIQSLLGEPN ESPL
Sbjct:    65 YPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPL 124

Query:   154 NSYAAALLNNKE 165
             NSYAA+L +N++
Sbjct:   125 NSYAASLWSNQD 136

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

UNIPROTKB|P56616 ube2c "Ubiquitin-conjugating enzyme E2 C" [Xenopus laevis (taxid:8355)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 97/157 (61%), Positives = 118/157 (75%)

Query:    10 ENLRATAAAS--SKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTW 67
             +N+   AA+S  S++   S  +    SV +RLQ+ELM+LMMSG D G+SAFPE +++F W
Sbjct:     4 QNVDPAAASSVASRKGQESGTSAARGSVGKRLQQELMTLMMSG-DKGISAFPESDNLFKW 62

Query:    68 IGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKW 127
             IGTI+G  GT+YE L YKLSL FP  YP+  P VKF T CFHPNVD +GNICLDIL+DKW
Sbjct:    63 IGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKW 122

Query:   128 SSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK 164
             S+ YD RTILLS+QSLLGEPN ESPLN YAA L  N+
Sbjct:   123 SALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQ 159

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0010994 "free ubiquitin chain polymerization" evidence=ISS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0070979 "protein K11-linked ubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

ZFIN|ZDB-GENE-051030-48 ube2c "ubiquitin-conjugating enzyme E2C" [Danio rerio (taxid:7955)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 93/157 (59%), Positives = 122/157 (77%)

Query:    10 ENLRATAAASSKQPVSSPN-TVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWI 68
             +N+   AA+++    S  + T    SV++RLQ+ELM+LMMSG D G+SAFPE +++F WI
Sbjct:   187 QNMDPAAASTATLKGSETSVTASKGSVSKRLQQELMTLMMSG-DKGISAFPESDNLFKWI 245

Query:    69 GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWS 128
             GTI+G +GT+YEGL YKLSL FP  YP+  P+VKF T CFHPNVD+ G ICLDIL+DKWS
Sbjct:   246 GTIDGAQGTVYEGLRYKLSLEFPSGYPYNAPRVKFITACFHPNVDENGIICLDILKDKWS 305

Query:   129 SAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 165
             + YD R+ILLSIQSLLGEPN +SP+NS AA + +++E
Sbjct:   306 ALYDVRSILLSIQSLLGEPNNDSPMNSTAAEMWDDQE 342

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|O00762 UBE2C "Ubiquitin-conjugating enzyme E2 C" [Homo sapiens (taxid:9606)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 89/150 (59%), Positives = 111/150 (74%)

Query:    14 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG 73
             AT+ A++++            V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G
Sbjct:    10 ATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHG 68

Query:    74 GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
               GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL++KWS+ YD 
Sbjct:    69 AAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDV 128

Query:   134 RTILLSIQSLLGEPNPESPLNSYAAALLNN 163
             RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct:   129 RTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

GO:0005524 "ATP binding" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0008054 "cyclin catabolic process" evidence=IDA

GO:0007049 "cell cycle" evidence=NAS

GO:0007051 "spindle organization" evidence=NAS

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0010458 "exit from mitosis" evidence=IMP

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0010994 "free ubiquitin chain polymerization" evidence=IDA

GO:0031536 "positive regulation of exit from mitosis" evidence=IMP

GO:0070936 "protein K48-linked ubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051488 "activation of anaphase-promoting complex activity" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

UNIPROTKB|Q4R9D1 UBE2C "Ubiquitin-conjugating enzyme E2 C" [Macaca fascicularis (taxid:9541)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 89/150 (59%), Positives = 110/150 (73%)

Query:    14 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG 73
             AT+  ++++            V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G
Sbjct:    10 ATSVTAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHG 68

Query:    74 GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
               GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD 
Sbjct:    69 AAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDV 128

Query:   134 RTILLSIQSLLGEPNPESPLNSYAAALLNN 163
             RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct:   129 RTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0010994 "free ubiquitin chain polymerization" evidence=ISS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

GO:0070979 "protein K11-linked ubiquitination" evidence=ISS

RGD|1305382 Ube2c "ubiquitin-conjugating enzyme E2C" [Rattus norvegicus (taxid:10116)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 88/129 (68%), Positives = 103/129 (79%)

Query:    35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
             V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  Y
Sbjct:    31 VGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 89

Query:    95 PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
             P+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN ESPLN
Sbjct:    90 PYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIESPLN 149

Query:   155 SYAAALLNN 163
             ++AA L  N
Sbjct:   150 THAAELWKN 158

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005680 "anaphase-promoting complex" evidence=IEA;ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0008054 "cyclin catabolic process" evidence=IEA;ISO

GO:0010458 "exit from mitosis" evidence=IEA;ISO

GO:0010994 "free ubiquitin chain polymerization" evidence=IEA;ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0031536 "positive regulation of exit from mitosis" evidence=IEA;ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA;ISO

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA;ISO

UNIPROTKB|Q32PA5 UBE2C "Ubiquitin-conjugating enzyme E2 C" [Bos taurus (taxid:9913)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 89/150 (59%), Positives = 110/150 (73%)

Query:    14 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG 73
             A + A++++            V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G
Sbjct:    10 AASVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHG 68

Query:    74 GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
               GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD 
Sbjct:    69 AAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDV 128

Query:   134 RTILLSIQSLLGEPNPESPLNSYAAALLNN 163
             RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct:   129 RTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

GO:0070979 "protein K11-linked ubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0010994 "free ubiquitin chain polymerization" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0031536 "positive regulation of exit from mitosis" evidence=IEA

GO:0008054 "cyclin catabolic process" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2RN95 UBE2C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 89/150 (59%), Positives = 110/150 (73%)

Query:    14 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG 73
             A + A++++            V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G
Sbjct:    10 AASVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHG 68

Query:    74 GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
               GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YD 
Sbjct:    69 AAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDV 128

Query:   134 RTILLSIQSLLGEPNPESPLNSYAAALLNN 163
             RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct:   129 RTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0031536 "positive regulation of exit from mitosis" evidence=IEA

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0010994 "free ubiquitin chain polymerization" evidence=IEA

GO:0010458 "exit from mitosis" evidence=IEA

GO:0008054 "cyclin catabolic process" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00103	UBC11_SCHPO	6, ., 3, ., 2, ., 1, 9	0.5664	0.7747	0.8011	yes	no
P56616	UBE2C_XENLA	6, ., 3, ., 2, ., 1, 9	0.6225	0.8241	0.8379	N/A	no
P52478	UBC1_CAEEL	6, ., 3, ., 2, ., 1, 9	0.5038	0.7032	0.6666	yes	no
Q9VTY6	UBE2C_DROME	6, ., 3, ., 2, ., 1, 9	0.5958	0.7967	0.8146	yes	no
Q9D1C1	UBE2C_MOUSE	6, ., 3, ., 2, ., 1, 9	0.6666	0.7032	0.7150	yes	no
O00762	UBE2C_HUMAN	6, ., 3, ., 2, ., 1, 9	0.5933	0.8186	0.8324	yes	no
Q95044	UBE2C_SPISO	6, ., 3, ., 2, ., 1, 9	0.5496	0.8241	0.8474	N/A	no
Q4R9D1	UBE2C_MACFA	6, ., 3, ., 2, ., 1, 9	0.5933	0.8186	0.8324	N/A	no
Q32PA5	UBE2C_BOVIN	6, ., 3, ., 2, ., 1, 9	0.5933	0.8186	0.8324	yes	no
Q9LJZ5	UBC19_ARATH	6, ., 3, ., 2, ., 1, 9	0.6917	0.7967	0.8011	yes	no
P52492	UBC11_YEAST	6, ., 3, ., 2, ., 1, 9	0.5581	0.6978	0.8141	yes	no
Q54XS6	UBE2C_DICDI	6, ., 3, ., 2, ., 1, 9	0.6742	0.7197	0.8562	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.946
3rd Layer	6.3.2	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	1e-56
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	3e-54
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	1e-53
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	5e-49
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	2e-35
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	5e-33
pfam05773	113	pfam05773, RWD, RWD domain	0.002

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  174 bits (443), Expect = 1e-56
 Identities = 72/129 (55%), Positives = 86/129 (66%), Gaps = 2/129 (1%)

Query: 38  RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97
           RLQKEL  L+      G+SAFP  +++F W  TI G +GT YEG  +KL + FP DYPFK
Sbjct: 1   RLQKELKELLKDP-PPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFK 59

Query: 98  PPQVKFETMCFHPNVDQYGNICLDILQDK-WSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
           PP+VKF T  +HPNVD  G ICLDIL+D+ WS A     +LLSIQSLL EPNPE PLN+ 
Sbjct: 60  PPKVKFTTKIYHPNVDPSGEICLDILKDENWSPALTIEQVLLSIQSLLSEPNPEDPLNAE 119

Query: 157 AAALLNNKE 165
           AA L     
Sbjct: 120 AAKLYRKNR 128

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  168 bits (427), Expect = 3e-54
 Identities = 71/132 (53%), Positives = 86/132 (65%), Gaps = 3/132 (2%)

Query: 36  TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYP 95
           ++RLQKEL  L       G+SA P  E++  W GTI G   T YEG  +KL + FP DYP
Sbjct: 1   SKRLQKELKDLKKDPPS-GISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYP 59

Query: 96  FKPPQVKFETMCFHPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
           FKPP+V+F T  +HPNVD+ G ICL IL    WS AY  RT+LLS+QSLL EPNP  PLN
Sbjct: 60  FKPPKVRFVTKIYHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLN 119

Query: 155 SYAAAL-LNNKE 165
           + AA L   N+E
Sbjct: 120 AEAAKLYKENRE 131

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  167 bits (424), Expect = 1e-53
 Identities = 73/137 (53%), Positives = 89/137 (64%), Gaps = 3/137 (2%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRF 90
           + S  +RL KEL  L       G+SA P  +  +F W  TI G   T YEG  +KL+L F
Sbjct: 3   SPSALKRLLKELKKLQKDPPP-GISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEF 61

Query: 91  PLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPE 150
           P DYPFKPP+V+F T  FHPNVD  GN+CLDIL+D+WS  Y   TILLS+QSLL  PNP+
Sbjct: 62  PEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPD 121

Query: 151 SPLNSYAAALL-NNKEG 166
           SPLN+ AA L   +KE 
Sbjct: 122 SPLNTEAATLYREDKEE 138

Length = 153

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  155 bits (394), Expect = 5e-49
 Identities = 71/128 (55%), Positives = 86/128 (67%), Gaps = 3/128 (2%)

Query: 38  RLQKELMSLMMSGGDLGVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           RL KEL  L       G +A+P + E++  W GTI G  GT YEG  +KL++ FP DYPF
Sbjct: 1   RLLKELKELRKDPPP-GFTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPF 59

Query: 97  KPPQVKFETMCFHPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNS 155
           KPP+VKF T  +HPNVD  G ICLDIL Q+KWS A    T+LLS+QSLL EPNP+SPLN+
Sbjct: 60  KPPKVKFITKIYHPNVDSSGEICLDILKQEKWSPALTLETVLLSLQSLLSEPNPDSPLNA 119

Query: 156 YAAALLNN 163
            AA L   
Sbjct: 120 DAAELYKK 127

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score =  121 bits (304), Expect = 2e-35
 Identities = 57/125 (45%), Positives = 81/125 (64%), Gaps = 1/125 (0%)

Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           S+++R++KE  +L  +    G+ A P+  +   +   +EG  GT YEG  YKL L  P  
Sbjct: 2   SISKRIEKETQNLA-NDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQ 60

Query: 94  YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           YP +PP+V+F T  +HPN+D+ G ICLDIL+DKWS A   RT+LLSIQ+LL  P P+ PL
Sbjct: 61  YPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPL 120

Query: 154 NSYAA 158
           ++  A
Sbjct: 121 DTSVA 125

Length = 152

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score =  114 bits (287), Expect = 5e-33
 Identities = 56/118 (47%), Positives = 76/118 (64%), Gaps = 1/118 (0%)

Query: 36  TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYP 95
           T+R+QKE   L+        SA P  E++F W  +I G   + Y G  + LS+ FP DYP
Sbjct: 3   TKRIQKEHKDLLKDPPS-NCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYP 61

Query: 96  FKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           FKPP+V+F T  +HPN++  G+ICLDIL+D+WS A     +LLSI SLL +PNP+ PL
Sbjct: 62  FKPPKVQFTTKIYHPNINSNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPL 119

Length = 147

>gnl|CDD|218742 pfam05773, RWD, RWD domain

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 37  QRLQKELMSL-MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYP 95
           +  ++EL +L  +   +            FT    +   +      +S  L+   P DYP
Sbjct: 4   ELQEEELEALESIYPDEFEDEVKESSPPTFTIKLKLLTSEAESSPLVSLVLTFTLPEDYP 63

Query: 96  FKPPQVKFETMCFHPNVDQYGNICLDILQDKWSS 129
            +PP++           DQ     L  L++    
Sbjct: 64  DEPPKISLS--SPWLLRDQDKLQLLKELEELAEE 95

This domain was identified in WD40 repeat proteins and Ring finger domain proteins. The function of this domain is unknown. GCN2 is the alpha-subunit of the only translation initiation factor (eIF2 alpha) kinase that appears in all eukaryotes. Its function requires an interaction with GCN1 via the domain at its N-terminus, which is termed the RWD domain after three major RWD-containing proteins: RING finger-containing proteins, WD-repeat-containing proteins, and yeast DEAD (DEXD)-like helicases. The structure forms an alpha + beta sandwich fold consisting of two layers: a four-stranded antiparallel beta-sheet, and three side-by-side alpha-helices. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	100.0
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.97
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	99.95
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.9
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.84
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.74
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.62
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.46
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	99.0
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.56
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	98.35
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	98.09
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	97.84
KOG3357	167	consensus Uncharacterized conserved protein [Funct	97.46
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	96.54
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	95.9
smart00591	107	RWD domain in RING finger and WD repeat containing	94.85
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	94.23
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	86.38
PF09765	291	WD-3: WD-repeat region; InterPro: IPR019162 This e	80.9

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.6e-52  Score=314.39  Aligned_cols=145  Identities=50%  Similarity=0.793  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV  112 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni  112 (182)
                      .+.+||++|++.|++ ++++++++.+.++ |+++|+++|.||++|||+||+|++.|.||++||++||+|+|.++||||||
T Consensus         5 ~a~~RL~kE~~~l~~-~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV   83 (153)
T COG5078           5 SALKRLLKELKKLQK-DPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNV   83 (153)
T ss_pred             hHHHHHHHHHHHHhc-CCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCc
Confidence            389999999999999 8899999999977 99999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       113 ~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      |.+|+|||++|++.|+|+++|++||.+|++||.+||.++|+|.|||++|++| ++|.++||++++++.
T Consensus        84 ~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~  151 (153)
T COG5078          84 DPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYA  151 (153)
T ss_pred             CCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999 999999999998874

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-52  Score=307.97  Aligned_cols=144  Identities=43%  Similarity=0.735  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeC
Q 030116           35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ  114 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~  114 (182)
                      +.+||.+|+++|++ ++++||++.++++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus         2 a~~RI~kE~~~l~~-dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~   80 (148)
T KOG0417|consen    2 ASKRIIKELQDLLR-DPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS   80 (148)
T ss_pred             cHHHHHHHHHHHhc-CCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence            45699999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          115 YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       115 ~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      +|+||+|+|++.|+|+.+|..||.+|++||.+||+++|++.++|++|+.| ++|.++||+|+++|.
T Consensus        81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA  146 (148)
T KOG0417|consen   81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYA  146 (148)
T ss_pred             cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999 999999999999885

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=1.5e-48  Score=297.55  Aligned_cols=145  Identities=41%  Similarity=0.684  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      +++|||++|+++|++ ++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus         2 ~~~kRl~~E~~~l~~-~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~   80 (152)
T PTZ00390          2 SISKRIEKETQNLAN-DPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNID   80 (152)
T ss_pred             cHHHHHHHHHHHHHh-CCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceEC
Confidence            367999999999999 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      .+|.||+++|+++|+|++||.+||++|+++|.+|++++|+|.+||++|++| ++|.++|++|+++|.
T Consensus        81 ~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a  147 (152)
T PTZ00390         81 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYA  147 (152)
T ss_pred             CCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999 999999999998874

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=4.2e-48  Score=293.73  Aligned_cols=144  Identities=40%  Similarity=0.694  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeC
Q 030116           35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ  114 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~  114 (182)
                      +.+||++|+++|++ ++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus         2 a~~Rl~kE~~~l~~-~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~   80 (147)
T PLN00172          2 ATKRIQKEHKDLLK-DPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS   80 (147)
T ss_pred             hHHHHHHHHHHHHh-CCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence            46899999999999 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          115 YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       115 ~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|.+| ++|.++||+|+++|.
T Consensus        81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a  146 (147)
T PLN00172         81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA  146 (147)
T ss_pred             CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999 999999999998875

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.9e-48  Score=279.34  Aligned_cols=143  Identities=43%  Similarity=0.710  Sum_probs=138.9

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116           32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN  111 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  111 (182)
                      ++.|.|||++|++.|++ +++.|++..|.++|+++|+++|+||.+|||+||+|++.|.|+++||.+||.|+|++++||||
T Consensus         2 stpArrrLmrDfkrlqe-dpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN   80 (152)
T KOG0419|consen    2 STPARRRLMRDFKRLQE-DPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN   80 (152)
T ss_pred             CchHHHHHHHHHHHhhc-CCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence            34688999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcc
Q 030116          112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSP  175 (182)
Q Consensus       112 i~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~  175 (182)
                      |+.+|.+|||+|...|+|.|++..||.+|++||.+|++++|+|.+||++|+++ .+|.+.++...
T Consensus        81 vya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~v  145 (152)
T KOG0419|consen   81 VYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETV  145 (152)
T ss_pred             cCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999 99999998763

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-45  Score=271.01  Aligned_cols=142  Identities=35%  Similarity=0.554  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           35 VTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      +..-|+++|++|++ .+..|+++..+++ |+++|.|.|+||++|+|+||.|+..+.||.+||.+||+++|.++||||||+
T Consensus         6 a~~ll~~qlk~L~~-~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy   84 (171)
T KOG0425|consen    6 ASLLLLKQLKELQE-EPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY   84 (171)
T ss_pred             hHHHHHHHHHHHhc-CCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC
Confidence            67788999999999 9999999998854 999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccc
Q 030116          114 QYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVY  177 (182)
Q Consensus       114 ~~G~icl~~l~-------------~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~  177 (182)
                      ++|++|++||.             +.|.|.+|+++||++|.+||.+||.++|+|.|||+.|+++ ++|.+++++++.+
T Consensus        85 ~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~  162 (171)
T KOG0425|consen   85 EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRR  162 (171)
T ss_pred             CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHH
Confidence            99999999993             5799999999999999999999999999999999999999 9999999988754

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.5e-45  Score=267.15  Aligned_cols=158  Identities=60%  Similarity=0.976  Sum_probs=149.0

Q ss_pred             cCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCC
Q 030116           17 AASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF   96 (182)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~   96 (182)
                      ++.+++.+.+........+.|||+.||..|.. ...+||+++|++||++.|.++|.||.+|+|+|-.|++.+.||.+||+
T Consensus        12 ~~~sk~~a~~m~v~~~~~V~KRLq~ELm~Lmm-s~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy   90 (175)
T KOG0421|consen   12 TNGSKQSAAPMAVVDGHSVTKRLQSELMGLMM-SNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPY   90 (175)
T ss_pred             CCcccCCCCCcccccCchHHHHHHHHHHHHHh-cCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCC
Confidence            36677777777788899999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             CCCcceeccccCCCceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhchHHHHHHHhhcc
Q 030116           97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEGCIHMFSLSP  175 (182)
Q Consensus        97 ~pP~v~f~t~i~HPni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~~~f~~~a~~~~  175 (182)
                      +||+|+|.|++||||||..|.||||||++.|+..|+++.||.+|++||.+||.++|+|..||+++.+-++|++.+...-
T Consensus        91 ~pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~d~~eykk~l~~~Y  169 (175)
T KOG0421|consen   91 KPPTVKFLTPCFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWSDQEEYKKYLEALY  169 (175)
T ss_pred             CCCeeEeeccccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhcCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999993399999887643

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-43  Score=269.13  Aligned_cols=143  Identities=34%  Similarity=0.602  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116           35 VTQRLQKELMSLMMSGG---DLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN  111 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~---~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  111 (182)
                      +.+||++|++++.+ ++   ..|+.+..+++|+.+..+.|.||+|||||||+|.++|++|++|||+||+|+|.|+|||||
T Consensus         4 ~~~ri~~e~k~v~~-~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPn   82 (200)
T KOG0418|consen    4 AFKRINREQKEVLD-DPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPN   82 (200)
T ss_pred             HHHHHHHHHHHhcc-ChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCC
Confidence            78999999999998 66   689999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeC-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccc
Q 030116          112 VDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYY  178 (182)
Q Consensus       112 i~~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~  178 (182)
                      |.+ +|.||||+|++.|++++|++.+|.+|+++|..|++.+|.+.++|++|.++ +.|.+.||.|+..|
T Consensus        83 VSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~f  151 (200)
T KOG0418|consen   83 VSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEF  151 (200)
T ss_pred             CCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            999 99999999999999999999999999999999999999999999999999 99999999998765

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=5.5e-43  Score=263.43  Aligned_cols=137  Identities=50%  Similarity=0.812  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCCC
Q 030116           38 RLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG  116 (182)
Q Consensus        38 RL~~El~~l~~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G  116 (182)
                      ||++|+++|++ +++.|+.+.+.++ |+.+|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+.+|
T Consensus         1 Rl~~E~~~l~~-~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G   79 (140)
T PF00179_consen    1 RLQKELKELQK-NPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENG   79 (140)
T ss_dssp             HHHHHHHHHHH-SHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTS
T ss_pred             CHHHHHHHHhh-CCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccc
Confidence            89999999999 9999999999886 999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCCC-ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcc
Q 030116          117 NICLDILQD-KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSP  175 (182)
Q Consensus       117 ~icl~~l~~-~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~  175 (182)
                      .||+++|.. .|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|+++ ++|.++||+|.
T Consensus        80 ~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~  140 (140)
T PF00179_consen   80 RICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA  140 (140)
T ss_dssp             BBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred             cchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence            999999974 599999999999999999999999999999999999999 99999999873

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-42  Score=255.39  Aligned_cols=146  Identities=35%  Similarity=0.557  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEEEecC-----CCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecccc
Q 030116           33 TSVTQRLQKELMSLMMSGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC  107 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i  107 (182)
                      ..++.||+.|-+.+.+ +.+-|+++.|..     .|++.|+|.|.|+.||+||||.|++++.||++||.+||+++|.++.
T Consensus         3 ~~~~~rl~eErk~wrk-~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl   81 (158)
T KOG0424|consen    3 GIALNRLAEERKKWRK-DHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPL   81 (158)
T ss_pred             chHHHHHHHHHHHHhh-cCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCC
Confidence            4578999999999999 999999999872     3799999999999999999999999999999999999999999999


Q ss_pred             CCCceeCCCcEEeecCCCc--cCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          108 FHPNVDQYGNICLDILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       108 ~HPni~~~G~icl~~l~~~--W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      |||||+++|.|||++|.+.  |+|+.||.+||.+|+.||.+||..+|+|.||..+|.+| .+|.++||.++++|+
T Consensus        82 ~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a  156 (158)
T KOG0424|consen   82 FHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYA  156 (158)
T ss_pred             cCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhc
Confidence            9999999999999999754  99999999999999999999999999999999999999 999999999999875

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=2.4e-42  Score=260.29  Aligned_cols=138  Identities=51%  Similarity=0.824  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCCC
Q 030116           37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG  116 (182)
Q Consensus        37 ~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G  116 (182)
                      |||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|
T Consensus         2 ~Rl~~E~~~l~~-~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G   80 (141)
T cd00195           2 KRLQKELKDLKK-DPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG   80 (141)
T ss_pred             chHHHHHHHHHh-CCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence            799999999999 8889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCCCc-cCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcc
Q 030116          117 NICLDILQDK-WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSP  175 (182)
Q Consensus       117 ~icl~~l~~~-W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~  175 (182)
                      .||++++... |+|++++.+||.+|+++|.+|+.++|+|.+||.+|++| ++|.++|+.++
T Consensus        81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~  141 (141)
T cd00195          81 KICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT  141 (141)
T ss_pred             CCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence            9999999766 99999999999999999999999999999999999999 99999999864

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-42  Score=250.16  Aligned_cols=145  Identities=33%  Similarity=0.579  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEEEec-CCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116           33 TSVTQRLQKELMSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN  111 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  111 (182)
                      ..|+|||++||++|-. ++++|+.+.|. ++|+++|.+.|.||++|+|+||.|..++.||.+||.+||+++|...+||||
T Consensus         3 ~~AlkRLm~EykqLt~-~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPN   81 (165)
T KOG0426|consen    3 GTALKRLMAEYKQLTL-NPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPN   81 (165)
T ss_pred             hhHHHHHHHHHHHHcc-CCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCc
Confidence            4689999999999999 99999999987 789999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEeecCC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccc
Q 030116          112 VDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVY  177 (182)
Q Consensus       112 i~~~G~icl~~l~-------------~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~  177 (182)
                      |+.+|+||+++|.             +.|+|.++++.||.++.+||.+||.++++|.+|+.+++++ ++|.+.|+..+.|
T Consensus        82 iy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrK  161 (165)
T KOG0426|consen   82 IYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRK  161 (165)
T ss_pred             ccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHH
Confidence            9999999999993             5799999999999999999999999999999999999999 9999999988765


Q ss_pred             c
Q 030116          178 Y  178 (182)
Q Consensus       178 ~  178 (182)
                      .
T Consensus       162 t  162 (165)
T KOG0426|consen  162 T  162 (165)
T ss_pred             h
Confidence            3

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=100.00  E-value=2.1e-41  Score=256.32  Aligned_cols=142  Identities=52%  Similarity=0.846  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCC
Q 030116           37 QRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY  115 (182)
Q Consensus        37 ~RL~~El~~l~~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~  115 (182)
                      +||++|++++++ +.+.|+.+.+.++ |+.+|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+++
T Consensus         1 ~Rl~~E~~~~~~-~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~   79 (145)
T smart00212        1 KRLLKELKELLK-DPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSS   79 (145)
T ss_pred             ChHHHHHHHHHh-CCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCC
Confidence            599999999999 8889999998865 99999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeecCC-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          116 GNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       116 G~icl~~l~-~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      |.||++++. ++|+|++++.+||.+|+++|.+|+.++|+|.+|+++|.++ +.|.++|+++++++.
T Consensus        80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~  145 (145)
T smart00212       80 GEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA  145 (145)
T ss_pred             CCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            999999998 8999999999999999999999999999999999999999 999999999998863

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.2e-39  Score=235.34  Aligned_cols=144  Identities=28%  Similarity=0.565  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeE-EEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVS-AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV  112 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~-~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni  112 (182)
                      .+.+||.+||.+|++ ++...+. +...++|++.|++.|. |++-||..|.|+++|.||.+|||+||+|.|.|+||||||
T Consensus         2 ~a~~Rl~kEL~dl~~-~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNV   79 (153)
T KOG0422|consen    2 AAPRRLRKELADLQK-NKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNV   79 (153)
T ss_pred             chhHHHHHHHHHHHh-ccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCC
Confidence            478999999999999 7766554 3444789999999999 999999999999999999999999999999999999999


Q ss_pred             eCCCcEEeecC-CCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          113 DQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       113 ~~~G~icl~~l-~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      |+.|.+|+.++ .++|+|+..+++||+.|..++.+|+++.|++.|+|..|.+| ..|.++|.+++++|.
T Consensus        80 De~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~  148 (153)
T KOG0422|consen   80 DEKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYS  148 (153)
T ss_pred             CCCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhc
Confidence            99999999999 58999999999999999999999999999999999999999 999999999999885

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-37  Score=232.33  Aligned_cols=148  Identities=32%  Similarity=0.576  Sum_probs=129.5

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhhCCCCCeEE-Eec-CCCCc--eEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcce
Q 030116           27 PNTVDTTSVTQRLQKELMSLMMSGGDLGVSA-FPE-GESIF--TWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVK  102 (182)
Q Consensus        27 ~~~~~~~~~~~RL~~El~~l~~~~~~~g~~~-~~~-~~~~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~  102 (182)
                      +.....+.++-||++|+.++.-   +++++. .+. .++++  +++++|. |+++.|.||.|+|.+.+|+.||+.||+|+
T Consensus        21 ~~~~~~s~a~lrl~~di~elnL---p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVk   96 (184)
T KOG0420|consen   21 STRKKVSAALLRLKKDILELNL---PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVK   96 (184)
T ss_pred             cccccccHHHHHHHhhhhhccC---CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeee
Confidence            3444556688899999998853   445542 222 34444  4999999 99999999999999999999999999999


Q ss_pred             eccccCCCceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccc
Q 030116          103 FETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYY  178 (182)
Q Consensus       103 f~t~i~HPni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~  178 (182)
                      |.|+|||||||.+|.|||+||+++|+|+.++.+|+.+|+.||.+|+++||+|.+||.++++| +.|...||..-..+
T Consensus        97 CltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg  173 (184)
T KOG0420|consen   97 CLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGG  173 (184)
T ss_pred             eeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999 99999999875543

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-36  Score=229.37  Aligned_cols=141  Identities=32%  Similarity=0.574  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeC
Q 030116           35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ  114 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~  114 (182)
                      ..|||..|...|..    .+..+..+++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|+++||||||++
T Consensus         4 ~~rRid~Dv~KL~~----s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe   79 (189)
T KOG0416|consen    4 GKRRIDTDVMKLLM----SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE   79 (189)
T ss_pred             cccchhhHHHHHHh----cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence            45899999999887    25568878899999999999999999999999999999999999999999999999999999


Q ss_pred             -CCcEEeecCCCccCCCCCHHHHHHH-HHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          115 -YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       115 -~G~icl~~l~~~W~p~~~i~~vL~~-i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                       +|.|||++++..|+|.+.+..|+.. |-.||..||+.+|+|.+||.+|.++ ++|.+++|++.++|.
T Consensus        80 ~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA  147 (189)
T KOG0416|consen   80 ASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYA  147 (189)
T ss_pred             ccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence             9999999999999999999999886 5789999999999999999999999 999999999988874

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-35  Score=220.85  Aligned_cols=142  Identities=35%  Similarity=0.540  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      -.+|.+.+|+++|.. .++.||.|.+.++|+....+.|.||.||||++|+|++.+.+..+||.+||+-.|+|+||||||-
T Consensus        10 ~vik~~~kEl~~l~~-~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa   88 (223)
T KOG0423|consen   10 NVIKQLAKELKSLDE-SPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA   88 (223)
T ss_pred             HHHHHHHHHHHhccc-CCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc
Confidence            478999999999999 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccc
Q 030116          114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPV  176 (182)
Q Consensus       114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~  176 (182)
                      .||.||++.|+.+|+|...|..||..|+.||.+|++++.+|.+|.+++.++ ++|.+.||.++-
T Consensus        89 aNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~Te  152 (223)
T KOG0423|consen   89 ANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTE  152 (223)
T ss_pred             cCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999 999999998754

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.2e-30  Score=186.93  Aligned_cols=142  Identities=32%  Similarity=0.555  Sum_probs=122.5

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccc
Q 030116           27 PNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM  106 (182)
Q Consensus        27 ~~~~~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~  106 (182)
                      ++..-+..+.+||++||.+|+. +++.|+... +.+|+..|.+-+.|-+||.|+|-+|.+.++||+.||+..|.|.|..+
T Consensus         8 ~rk~ls~~at~RLqKEl~e~q~-~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~   85 (161)
T KOG0427|consen    8 SRKALSKIATNRLQKELSEWQN-NPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP   85 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhc-CCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC
Confidence            3344456799999999999999 999999887 78999999999999999999999999999999999999999999998


Q ss_pred             c-CCCceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcC-CCCCCcccHHHHHHhhchHHHHHHHh--hcccccc
Q 030116          107 C-FHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAALLNNKEGCIHMFS--LSPVYYH  179 (182)
Q Consensus       107 i-~HPni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~-p~~~~p~N~~a~~~~~~~~~f~~~a~--~~~~~~~  179 (182)
                      + .||+|+.||.|||++|.+.|+|++++.+|+.+|.+||.. .....|.+.         ..|.++++  +..++.+
T Consensus        86 ~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~Dn---------~~Yvk~C~~grsPk~Tr  153 (161)
T KOG0427|consen   86 APLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTDN---------DRYVKNCKNGRSPKETR  153 (161)
T ss_pred             CCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCcc---------chhhhhccCCCCcccce
Confidence            4 799999999999999999999999999999999999984 444455322         55666666  5554443

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.2e-27  Score=184.41  Aligned_cols=117  Identities=32%  Similarity=0.549  Sum_probs=106.4

Q ss_pred             CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccc--cC
Q 030116           31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM--CF  108 (182)
Q Consensus        31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~  108 (182)
                      .+..+.|||++||+.|++ ++.++|.+.|..+|+.+||.+|.||++|||+||.|+.+|.||.+||++||-|+++||  .|
T Consensus         2 a~k~a~kRl~keY~~l~k-~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF   80 (244)
T KOG0894|consen    2 ASKAAVKRLQKEYRALCK-DPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF   80 (244)
T ss_pred             cchHHHHHHHHHHHHHHh-CCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce
Confidence            456799999999999999 999999999999999999999999999999999999999999999999999999998  55


Q ss_pred             CCceeCCCcEEeecCC---CccCCCCCHHHHHHHHHHhhcC--CCCCCc
Q 030116          109 HPNVDQYGNICLDILQ---DKWSSAYDCRTILLSIQSLLGE--PNPESP  152 (182)
Q Consensus       109 HPni~~~G~icl~~l~---~~W~p~~~i~~vL~~i~~ll~~--p~~~~p  152 (182)
                      .+    +-++||++..   +.|+|++++.+||.+|.++|.+  |...+.
T Consensus        81 kt----ntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI  125 (244)
T KOG0894|consen   81 KT----NTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSI  125 (244)
T ss_pred             ec----CceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcc
Confidence            44    4799999884   8899999999999999999974  444443

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=4.3e-23  Score=161.79  Aligned_cols=148  Identities=19%  Similarity=0.296  Sum_probs=132.3

Q ss_pred             CCCcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCC--CCCcceeccc
Q 030116           29 TVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF--KPPQVKFETM  106 (182)
Q Consensus        29 ~~~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~  106 (182)
                      ......-...|+.|+..+.+ .+.+|+++.|+-.|-+.|.++|++.. ++|.||+|+|+|.+|++||.  .-|.|.|.+.
T Consensus        14 ~ig~i~qey~llAEf~lV~~-ekL~gIyviPSyan~l~WFGViFvr~-GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~   91 (258)
T KOG0429|consen   14 IIGNILQEYALLAEFVLVCR-EKLDGIYVIPSYANKLLWFGVIFVRK-GIYAGGVFRFTILIPDNFPDDSDLPRVVFEQS   91 (258)
T ss_pred             cchHHHHHHHHHHHHHHHHh-ccCCceEEcccccccceEEEEEEEec-ccccCceEEEEEEcCccCCCcCCCCeEEeecc
Confidence            33444455689999999998 89999999999999999999999655 59999999999999999995  8999999999


Q ss_pred             cCCCceeC-CCcEEeecCCCccCCC-CCHHHHHHHHHHhhcCCCCCCc--ccHHHHHHhhch-HHHHHHHhhccccc
Q 030116          107 CFHPNVDQ-YGNICLDILQDKWSSA-YDCRTILLSIQSLLGEPNPESP--LNSYAAALLNNK-EGCIHMFSLSPVYY  178 (182)
Q Consensus       107 i~HPni~~-~G~icl~~l~~~W~p~-~~i~~vL~~i~~ll~~p~~~~p--~N~~a~~~~~~~-~~f~~~a~~~~~~~  178 (182)
                      ++||+|.+ ++.+|+.-....|+-. .+|.+||+.|+.+|.+|+.+.+  .|+||+.+|+++ ++|.++|+++++.+
T Consensus        92 vfHP~icp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s  168 (258)
T KOG0429|consen   92 VFHPLICPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS  168 (258)
T ss_pred             ccccccCCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            99999999 9999998876679655 5899999999999999998766  699999999999 99999999998754

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=5.2e-21  Score=152.30  Aligned_cols=112  Identities=30%  Similarity=0.515  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116           33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV  112 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni  112 (182)
                      ..+.|||++|.++|+  ++...+...+.++|+++|+++|.||.||-|+||+|+.+|.||.+||++||.+..+|+-.  .+
T Consensus        10 npaVkRlmkEa~El~--~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG--RF   85 (314)
T KOG0428|consen   10 NPAVKRLMKEAAELK--DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG--RF   85 (314)
T ss_pred             CHHHHHHHHHHHHhc--CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC--ce
Confidence            358999999999998  57778889999999999999999999999999999999999999999999999998743  34


Q ss_pred             eCCCcEEeecCC---CccCCCCCHHHHHHHHHHhhc-CCC
Q 030116          113 DQYGNICLDILQ---DKWSSAYDCRTILLSIQSLLG-EPN  148 (182)
Q Consensus       113 ~~~G~icl~~l~---~~W~p~~~i~~vL~~i~~ll~-~p~  148 (182)
                      .-|.+|||++.+   +.|.|+++|...|..|..+|- .|+
T Consensus        86 E~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~  125 (314)
T KOG0428|consen   86 EVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE  125 (314)
T ss_pred             eeCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence            447899999984   789999999999999998885 444

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=9.2e-19  Score=162.06  Aligned_cols=118  Identities=26%  Similarity=0.463  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccc--cCCCc
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM--CFHPN  111 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPn  111 (182)
                      ...+..+.|++-|.. +.+.|+.|...++.+....+.|.|+.||||.+|.|.|.|.||.+||.+||.+...+.  .++||
T Consensus       851 ~~~~~~~~~~~~~~~-~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn  929 (1101)
T KOG0895|consen  851 QWAKKVQTEWKILPL-SLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN  929 (1101)
T ss_pred             HHHHHHHHHHHhhhc-cCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence            466677788888887 889999999999999999999999999999999999999999999999999999986  78999


Q ss_pred             eeCCCcEEeecCC-------CccCCCCCHHHHHHHHHHhhc--CCCCCCc
Q 030116          112 VDQYGNICLDILQ-------DKWSSAYDCRTILLSIQSLLG--EPNPESP  152 (182)
Q Consensus       112 i~~~G~icl~~l~-------~~W~p~~~i~~vL~~i~~ll~--~p~~~~p  152 (182)
                      .++.|+|||++|+       +-|+|+-+|.+||.+|+.|+-  +|.++.+
T Consensus       930 ly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~  979 (1101)
T KOG0895|consen  930 LYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEA  979 (1101)
T ss_pred             cccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCcc
Confidence            9999999999994       569999999999999999985  5655554

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=2e-15  Score=140.12  Aligned_cols=114  Identities=29%  Similarity=0.464  Sum_probs=106.4

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccc---cC
Q 030116           32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM---CF  108 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~  108 (182)
                      +....+|+++|++.+.+ +.++|+.+.+.+.++...++.|.|+.||||++|+|.|+|.||..||..||.+.+.+.   .+
T Consensus       280 s~~~skrv~ke~~llsk-dlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~  358 (1101)
T KOG0895|consen  280 SKNWSKKVAKELKLLSK-DLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRL  358 (1101)
T ss_pred             chhhHHHHHHHhhhhcc-cCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceee
Confidence            34588999999999999 999999999999999999999999999999999999999999999999999999986   78


Q ss_pred             CCceeCCCcEEeecCC-------CccCCC-CCHHHHHHHHHHhhcC
Q 030116          109 HPNVDQYGNICLDILQ-------DKWSSA-YDCRTILLSIQSLLGE  146 (182)
Q Consensus       109 HPni~~~G~icl~~l~-------~~W~p~-~~i~~vL~~i~~ll~~  146 (182)
                      .||.+.+|+||+++|.       +.|++. .++.++|..|+.++.+
T Consensus       359 nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~  404 (1101)
T KOG0895|consen  359 NPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN  404 (1101)
T ss_pred             cCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence            9999999999999993       679998 7999999999999963

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.5e-13  Score=100.52  Aligned_cols=110  Identities=29%  Similarity=0.386  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecC-CC--CceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116           36 TQRLQKELMSLMMSGGDLGVSAFPEG-ES--IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV  112 (182)
Q Consensus        36 ~~RL~~El~~l~~~~~~~g~~~~~~~-~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni  112 (182)
                      .-||.+|+.+=++...+..++....+ +|  +..|..+|.||+.|+||+-+|.++|....+||..||+|+|.+++--.-|
T Consensus         7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gv   86 (138)
T KOG0896|consen    7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGV   86 (138)
T ss_pred             chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeeccc
Confidence            34788888877663344445555443 33  4589999999999999999999999999999999999999999999888


Q ss_pred             eC-CCcEEeecC--CCccCCCCCHHHHHHHHHHhhc
Q 030116          113 DQ-YGNICLDIL--QDKWSSAYDCRTILLSIQSLLG  145 (182)
Q Consensus       113 ~~-~G~icl~~l--~~~W~p~~~i~~vL~~i~~ll~  145 (182)
                      +. +|.|.-..+  -.+|+..++++.||..++.++.
T Consensus        87 n~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~  122 (138)
T KOG0896|consen   87 NSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM  122 (138)
T ss_pred             ccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence            88 778774333  2799999999999999987654

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=5.3e-10  Score=79.82  Aligned_cols=93  Identities=23%  Similarity=0.400  Sum_probs=74.5

Q ss_pred             EEEEEEEeCCCCCCCCCcceeccccC-CCceeCCCcEEeecC-CCccCCCCCHHHHHHHHHHhhcCCCC--CCcccHHHH
Q 030116           83 SYKLSLRFPLDYPFKPPQVKFETMCF-HPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNP--ESPLNSYAA  158 (182)
Q Consensus        83 ~f~~~i~fp~~YP~~pP~v~f~t~i~-HPni~~~G~icl~~l-~~~W~p~~~i~~vL~~i~~ll~~p~~--~~p~N~~a~  158 (182)
                      ...+.+.|++|||+.||.++.+.|.. -.-|-.+|.||+.++ .++|+.+++|+.++++|..++.....  ..|++.+.-
T Consensus        12 ~ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk   91 (122)
T KOG0897|consen   12 NILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK   91 (122)
T ss_pred             eeEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh
Confidence            34577889999999999999888743 444556999999999 58999999999999999999997664  466666554


Q ss_pred             HHhhch---HHHHHHHhhccc
Q 030116          159 ALLNNK---EGCIHMFSLSPV  176 (182)
Q Consensus       159 ~~~~~~---~~f~~~a~~~~~  176 (182)
                       +|...   +.|++.++.+.+
T Consensus        92 -~~s~~qa~~sfksLv~~hek  111 (122)
T KOG0897|consen   92 -LYSHSQAQQSFKSLVQIHEK  111 (122)
T ss_pred             -HhhHHHHHHHHHHHHHHHHh
Confidence             55544   889988887765

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.56  E-value=2e-07  Score=69.55  Aligned_cols=67  Identities=31%  Similarity=0.607  Sum_probs=61.1

Q ss_pred             CCCEEEEEEEeCCCCCCCCCcceecccc---CCCceeCCCcEEe---ecCCCccCCCCCHHHHHHHHHHhhcC
Q 030116           80 EGLSYKLSLRFPLDYPFKPPQVKFETMC---FHPNVDQYGNICL---DILQDKWSSAYDCRTILLSIQSLLGE  146 (182)
Q Consensus        80 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPni~~~G~icl---~~l~~~W~p~~~i~~vL~~i~~ll~~  146 (182)
                      .|+.+.++|.||++||..||.|....+.   +-|+|+.+|.+|+   +..-+.|.|...+.++|.....+|.+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~  106 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED  106 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999988654   6899999999999   77778999999999999999999983

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=98.35  E-value=2.7e-06  Score=62.55  Aligned_cols=67  Identities=24%  Similarity=0.580  Sum_probs=49.1

Q ss_pred             CCCCCEEE--EEEEeCCCCCCCCCcceecccc-----CCCceeCCCcEEeecCCCccCC-CCCHHHHHHHHHHhhc
Q 030116           78 MYEGLSYK--LSLRFPLDYPFKPPQVKFETMC-----FHPNVDQYGNICLDILQDKWSS-AYDCRTILLSIQSLLG  145 (182)
Q Consensus        78 py~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~HPni~~~G~icl~~l~~~W~p-~~~i~~vL~~i~~ll~  145 (182)
                      .|+|..|.  +.|.+|.+||.+||.+......     -+.+||.+|+|.+..| ++|.. ..++.+++..+...|.
T Consensus        42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~lv~~l~~~F~  116 (121)
T PF05743_consen   42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVDLVQELQAVFS  116 (121)
T ss_dssp             CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHHHHHHHHHCCC
T ss_pred             ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHHHHHHHHHHHh
Confidence            57788775  6777999999999999776432     2349999999999999 58987 7899999999998886

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=98.09  E-value=3.3e-06  Score=62.86  Aligned_cols=100  Identities=22%  Similarity=0.393  Sum_probs=48.4

Q ss_pred             CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCC--------E--EEEEEEeCCCCCCCCCc
Q 030116           31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGL--------S--YKLSLRFPLDYPFKPPQ  100 (182)
Q Consensus        31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg--------~--f~~~i~fp~~YP~~pP~  100 (182)
                      +......||+.||..|-+       ++....++-..|.-.=..++||-|.|.        .  |.+++++|..||..||.
T Consensus        21 d~~~W~~RLKEEy~aLI~-------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pE   93 (161)
T PF08694_consen   21 DGDLWVQRLKEEYQALIK-------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPE   93 (161)
T ss_dssp             SCHHHHHHHHHHHHHHHH-------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS---
T ss_pred             CHHHHHHHHHHHHHHHHH-------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcc
Confidence            447899999999999866       222222222233222222444444332        3  44556669999999999


Q ss_pred             ceecccc-CCCceeCCCcEEeecC-CCcc---CCCCCHHHHH
Q 030116          101 VKFETMC-FHPNVDQYGNICLDIL-QDKW---SSAYDCRTIL  137 (182)
Q Consensus       101 v~f~t~i-~HPni~~~G~icl~~l-~~~W---~p~~~i~~vL  137 (182)
                      |..-.-- -..-.+..|+|||+.- ..-|   .|.++|...|
T Consensus        94 i~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal  135 (161)
T PF08694_consen   94 IALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL  135 (161)
T ss_dssp             -B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred             eeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence            9876421 1223345899999876 3446   5777776654

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.00013  Score=61.54  Aligned_cols=111  Identities=22%  Similarity=0.367  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEEEecC--CCCceEEEEEEcCCCCCCCCCEEE--EEEEeCCCCCCCCCcceeccc--
Q 030116           33 TSVTQRLQKELMSLMMSGGDLGVSAFPEG--ESIFTWIGTIEGGKGTMYEGLSYK--LSLRFPLDYPFKPPQVKFETM--  106 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~--~~~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~--  106 (182)
                      ..+.+.+...+.......+..-..+..+.  .+++...++|.    .+|.|.+|.  +.|.+.+.||..||.+.....  
T Consensus        19 ~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~   94 (365)
T KOG2391|consen   19 DLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTST   94 (365)
T ss_pred             hhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCch
Confidence            34555666666655542222222333332  24444444444    478888776  566789999999998855532  


Q ss_pred             ---cCCCceeCCCcEEeecCCCccC-CCCCHHHHHHHHHHhhcCCC
Q 030116          107 ---CFHPNVDQYGNICLDILQDKWS-SAYDCRTILLSIQSLLGEPN  148 (182)
Q Consensus       107 ---i~HPni~~~G~icl~~l~~~W~-p~~~i~~vL~~i~~ll~~p~  148 (182)
                         -.|-+||.+|+|.|..|. +|. |+.++..+++.+.+.|.++.
T Consensus        95 M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a~f~~~p  139 (365)
T KOG2391|consen   95 MIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIAAFSEDP  139 (365)
T ss_pred             hhhHHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHHHhcCCC
Confidence               138999999999999994 896 66799999999999998543

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.00037  Score=51.28  Aligned_cols=100  Identities=20%  Similarity=0.388  Sum_probs=64.5

Q ss_pred             CCcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCE----------EEEEEEeCCCCCCCCC
Q 030116           30 VDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLS----------YKLSLRFPLDYPFKPP   99 (182)
Q Consensus        30 ~~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~YP~~pP   99 (182)
                      -+.....+||+.||+.|..       +++-..++-..|.-.-..+.||-|-|.+          |-+++++|..||..+|
T Consensus        23 rd~~~wvqrlkeey~sli~-------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tap   95 (167)
T KOG3357|consen   23 RDGDLWVQRLKEEYQSLIA-------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAP   95 (167)
T ss_pred             ccchHHHHHHHHHHHHHHH-------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCc
Confidence            3556789999999999977       3444444555565444557788777753          4455566999999999


Q ss_pred             cceecccc-CCCceeCCCcEEeec-CCCccC---CCCCHHHH
Q 030116          100 QVKFETMC-FHPNVDQYGNICLDI-LQDKWS---SAYDCRTI  136 (182)
Q Consensus       100 ~v~f~t~i-~HPni~~~G~icl~~-l~~~W~---p~~~i~~v  136 (182)
                      .+....-- -.-..+..|+|||.- .+.-|.   |..+|...
T Consensus        96 eialpeldgktakmyrggkiclt~hfkplwarn~pkfgiaha  137 (167)
T KOG3357|consen   96 EIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA  137 (167)
T ss_pred             cccccccCchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence            98654210 011234589999854 456674   55555443

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=96.54  E-value=0.046  Score=40.15  Aligned_cols=90  Identities=19%  Similarity=0.257  Sum_probs=62.4

Q ss_pred             CCeEEEecCCCCceEEEEEEc--CCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCCCcE--EeecC-----
Q 030116           53 LGVSAFPEGESIFTWIGTIEG--GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI--CLDIL-----  123 (182)
Q Consensus        53 ~g~~~~~~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G~i--cl~~l-----  123 (182)
                      .|+.++.+.+.-..|.+ |.|  -+.+.|.+..-.+-|.+|..||..+|.+.+..|-....  .+|.|  |-+..     
T Consensus        12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G   88 (122)
T PF14462_consen   12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG   88 (122)
T ss_pred             cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence            46777777666667765 666  55667999999999999999999999988877633211  11222  22111     


Q ss_pred             ---------CCccCCCC-CHHHHHHHHHHhhc
Q 030116          124 ---------QDKWSSAY-DCRTILLSIQSLLG  145 (182)
Q Consensus       124 ---------~~~W~p~~-~i~~vL~~i~~ll~  145 (182)
                               ...|.|.. +|.+.|..|...|.
T Consensus        89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~  120 (122)
T PF14462_consen   89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALA  120 (122)
T ss_pred             eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence                     24688877 78888888877664

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=95.90  E-value=0.025  Score=39.83  Aligned_cols=70  Identities=17%  Similarity=0.102  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEc--CCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116           37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG--GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF  108 (182)
Q Consensus        37 ~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  108 (182)
                      .+...|+..|+. .-+..+ ......+...+.+.+.+  ...+.-....+.+.+.||++||..+|.|...++..
T Consensus         4 e~~~~EieaL~s-Iy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~~   75 (113)
T PF05773_consen    4 EQQEEEIEALQS-IYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPKN   75 (113)
T ss_dssp             HHHHHHHHHHHH-HSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEESS
T ss_pred             HHHHHHHHHHHH-HcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCCC
Confidence            466778888876 323222 22223444556666632  23334445689999999999999999998776544

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=94.85  E-value=0.18  Score=35.10  Aligned_cols=27  Identities=22%  Similarity=0.504  Sum_probs=22.4

Q ss_pred             CCCEEEEEEEeCCCCCCCCCcceeccc
Q 030116           80 EGLSYKLSLRFPLDYPFKPPQVKFETM  106 (182)
Q Consensus        80 ~gg~f~~~i~fp~~YP~~pP~v~f~t~  106 (182)
                      ..-.+.+.+.||.+||..+|.|.+.+.
T Consensus        39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~   65 (107)
T smart00591       39 QYVSLTLQVKLPENYPDEAPPISLLNS   65 (107)
T ss_pred             cceEEEEEEECCCCCCCCCCCeEEECC
Confidence            345688999999999999999987653

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=94.23  E-value=0.094  Score=40.43  Aligned_cols=60  Identities=22%  Similarity=0.368  Sum_probs=49.0

Q ss_pred             EEEEeCCCCCCCCCcceeccccC---CCceeCC-----CcEEeecC-CCccCCCCCHHHHHHHHHHhhc
Q 030116           86 LSLRFPLDYPFKPPQVKFETMCF---HPNVDQY-----GNICLDIL-QDKWSSAYDCRTILLSIQSLLG  145 (182)
Q Consensus        86 ~~i~fp~~YP~~pP~v~f~t~i~---HPni~~~-----G~icl~~l-~~~W~p~~~i~~vL~~i~~ll~  145 (182)
                      +.|.|+.+||..+|.+.+.-+.|   +|+++..     ..+|+.-- ...|.+..++..+|..|..-|.
T Consensus        57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~  125 (162)
T PF14457_consen   57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLR  125 (162)
T ss_pred             EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHH
Confidence            66899999999999877776533   5778775     67998655 3679999999999999999885

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=86.38  E-value=2.8  Score=39.75  Aligned_cols=70  Identities=16%  Similarity=0.198  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCC-CCCcceeccc
Q 030116           35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF-KPPQVKFETM  106 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~-~pP~v~f~t~  106 (182)
                      ..+-|..|+.-+..  ...++.++..+-.-..-.+.+.||-.---.....++.|.||.+||. .+|++.|..+
T Consensus       421 ~pQnLgeE~S~Ig~--k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~  491 (1081)
T KOG0309|consen  421 LPQNLGEEFSLIGV--KIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP  491 (1081)
T ss_pred             hhhhHHhHHhHhhc--cccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence            45567777776653  4555655544444456677777755433223456899999999999 6788988854

>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL

Probab=80.90  E-value=3.2  Score=34.95  Aligned_cols=88  Identities=20%  Similarity=0.292  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116           33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV  112 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni  112 (182)
                      ....++|.+|+.++.. +..  +.+ -.++++...++.+..-      .-...++|.++.+||.++|.+...-++ .   
T Consensus        98 ~~~ys~ll~EIe~IGW-~kl--~~i-~~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~-~---  163 (291)
T PF09765_consen   98 PQYYSNLLKEIEAIGW-DKL--VQI-QFDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPI-P---  163 (291)
T ss_dssp             -GGC-CHHHHHHHHHC-GCC--EEE-EE-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS-----
T ss_pred             cHHHHHHHHHHHHhcc-ccc--eEE-ecCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCc-c---
Confidence            4466788889998865 222  122 1367888888888732      247789999999999999975433322 0   


Q ss_pred             eCCCcEEeecCCCccCC-CCCHHHHHHHHHHhh
Q 030116          113 DQYGNICLDILQDKWSS-AYDCRTILLSIQSLL  144 (182)
Q Consensus       113 ~~~G~icl~~l~~~W~p-~~~i~~vL~~i~~ll  144 (182)
                                +...|.+ ..++.+|+...+..|
T Consensus       164 ----------~~~~w~~~~ssL~~v~~qF~~~l  186 (291)
T PF09765_consen  164 ----------FSLSWSPSQSSLKDVVQQFQEAL  186 (291)
T ss_dssp             ----------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred             ----------hhhhhcccccCHHHHHHHHHHHH
Confidence                      1136877 668888777766666

FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		9e-47
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		1e-46
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		6e-28
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		6e-28
1jas_A	152	Hsubc2b Length = 152		2e-27
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		7e-27
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		2e-26
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		4e-26
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		4e-26
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		6e-26
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		9e-26
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		3e-25
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		4e-25
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		4e-25
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		4e-25
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		4e-25
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		5e-25
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		7e-25
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		8e-25
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		1e-24
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		1e-24
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		1e-24
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		1e-24
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		1e-24
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		1e-24
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		1e-24
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		2e-24
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-24
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		2e-24
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		3e-24
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		4e-24
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		5e-24
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		5e-24
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		5e-24
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		5e-24
3jvz_A	146	E2~ubiquitin-Hect Length = 146		9e-24
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-23
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		2e-23
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		2e-23
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		2e-23
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		2e-23
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		2e-23
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		2e-23
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		2e-23
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-23
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		3e-23
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		3e-23
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		5e-23
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		2e-22
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		3e-22
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		4e-22
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		1e-19
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		5e-19
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		1e-18
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		1e-18
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		1e-18
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		2e-18
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		1e-17
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		1e-17
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		2e-17
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		4e-17
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		6e-17
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		8e-17
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		1e-16
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		1e-16
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		1e-16
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		1e-16
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		1e-16
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		1e-16
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		4e-16
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		4e-16
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		6e-16
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		7e-16
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		9e-16
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		1e-15
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-15
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		1e-15
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		2e-15
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		2e-15
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		2e-15
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		2e-15
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		2e-15
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		2e-15
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		2e-15
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		2e-15
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		3e-15
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		3e-15
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		3e-15
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		7e-15
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		7e-15
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		7e-15
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		9e-15
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		1e-14
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		3e-14
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		2e-12
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		3e-12
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		2e-09
2h2y_A	136	Crystal Structure Of Ubiquitin Conjugating Enzyme E		8e-09
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		1e-08
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		1e-08
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		3e-08
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		2e-07
4ds2_A	167	Ubiquitin Conjugating Enzyme (Putative) From Trypan		4e-07
2q0v_A	156	Crystal Structure Of Ubiquitin Conjugating Enzyme E		1e-06
3e95_C	158	Crystal Structure Of The Plasmodium Falciparum Ubiq		1e-06
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		4e-06
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		5e-06
3ceg_A	323	Crystal Structure Of The Ubc Domain Of Baculoviral		4e-05
2c2v_C	142	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		5e-04
2hlw_A	170	Solution Structure Of The Human Ubiquitin-Conjugati		7e-04
2a4d_A	160	Structure Of The Human Ubiquitin-Conjugating Enzyme		7e-04

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score =  182 bits (462), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 88/150 (58%), Positives = 110/150 (73%), Gaps = 1/150 (0%)
Query: 14  ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG 73
           AT+ A++++            V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G
Sbjct: 10  ATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHG 68
Query: 74  GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
             GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNI LDIL++KWS+ YD 
Sbjct: 69  AAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDV 128
Query: 134 RTILLSIQSLLGEPNPESPLNSYAAALLNN 163
           RTILLSIQSLLGEPN +SPLN++AA L  N
Sbjct: 129 RTILLSIQSLLGEPNIDSPLNTHAAELWKN 158

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score =  181 bits (460), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 109/131 (83%), Gaps = 1/131 (0%)
Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           SV++RLQ+EL +L+MSG D G++AFP+G+++F W+ T++G K T+YE L YKL+L FP D
Sbjct: 9   SVSKRLQQELRTLLMSG-DPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67
Query: 94  YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           YP+KPP VKF T C+HPNVDQ GNICLDIL++ W+++YD RTILLS+QSLLGEPN  SPL
Sbjct: 68  YPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPL 127
Query: 154 NSYAAALLNNK 164
           N+ AA + +N+
Sbjct: 128 NAQAADMWSNQ 138

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score =  120 bits (300), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/129 (50%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           TT   +RL ++   L       GVS  P  ++I TW   I G + T +E  ++KLSL F 
Sbjct: 2   TTPSRRRLMRDFKKLQ-EDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
            +YP KPP VKF +  FHPNV   G+ICLDILQ++WS  YD   IL SIQSLL EPNP S
Sbjct: 61  EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNS 120
Query: 152 PLNSYAAAL 160
           P NS AA L
Sbjct: 121 PANSLAAQL 129

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score =  119 bits (299), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/129 (50%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           TT   +RL ++   L       GVS  P  ++I TW   I G + T +E  ++KLSL F 
Sbjct: 5   TTPSRRRLMRDFKKLQ-EDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
            +YP KPP VKF +  FHPNV   G+ICLDILQ++WS  YD   IL SIQSLL EPNP S
Sbjct: 64  EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNS 123
Query: 152 PLNSYAAAL 160
           P NS AA L
Sbjct: 124 PANSLAAQL 132

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           +T   +RL ++   L      +GVS  P   +I  W   I G +GT +E  ++KL + F 
Sbjct: 2   STPARRRLMRDFKRLQ-EDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
            +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP S
Sbjct: 61  EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS 120
Query: 152 PLNSYAAAL 160
           P NS AA L
Sbjct: 121 PANSQAAQL 129

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  116 bits (290), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 59/129 (45%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           +T   +RL ++   L       G+S  P+  +I  W   I G   T ++G ++KLSL+F 
Sbjct: 2   STPARKRLMRDFKRLQQDPP-AGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
            DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP S
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 152 PLNSYAAAL 160
           P NS AA +
Sbjct: 121 PANSEAARM 129

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 77/125 (61%), Gaps = 1/125 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+QKEL  +         SA P G+ IF W  TI G   + Y+G  + L + FP+DYPF
Sbjct: 7   RRIQKELREIQQDPP-CNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPF 65
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
           K P+V F T  +HPN+++ G ICLDIL+D+WS A     +LLSI SLL +PNP  PL+  
Sbjct: 66  KAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPE 125
Query: 157 AAALL 161
            A +L
Sbjct: 126 VANVL 130

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 77/124 (62%), Gaps = 1/124 (0%)
Query: 35  VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           + +R+ KE  +L       G+ A P  E+   +   I G  GT YEG +YKL L  P  Y
Sbjct: 2   IPRRITKETQNLANEPPP-GIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 95  PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
           P +PP+V+F T  +HPN+D+ G ICLDIL+DKWS A   RT+LLSIQ+LL  P P+ PL+
Sbjct: 61  PMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLD 120
Query: 155 SYAA 158
           S  A
Sbjct: 121 SKVA 124

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 77/124 (62%), Gaps = 1/124 (0%)
Query: 35  VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           + +R+ KE  +L       G+ A P  E+   +   I G  GT YEG +YKL L  P  Y
Sbjct: 2   IPRRITKETQNLANEPPP-GIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 95  PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
           P +PP+V+F T  +HPN+D+ G ICLDIL+DKWS A   RT+LLSIQ+LL  P P+ PL+
Sbjct: 61  PMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLD 120
Query: 155 SYAA 158
           S  A
Sbjct: 121 SKVA 124

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score =  113 bits (282), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 75/119 (63%), Gaps = 5/119 (4%)
Query: 37  QRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           +R+ +EL  L   G D     SA P G+ +F W  TI G   + Y G  + LS+ FP DY
Sbjct: 4   KRINRELADL---GKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 95  PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           PFKPP+V F T  +HPN++  G+ICLDIL+D+WS A     +LLSI SLL +PNP+ PL
Sbjct: 61  PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPL 119

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score =  112 bits (281), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           +T   +RL ++    M      GVSA P  +++  W   I G   T YE  +++L L F 
Sbjct: 2   STPARRRLMRDF-KRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
            +YP KPP VKF +  FHPNV   G ICLDILQ++W+  YD  +IL SIQSL  +PNP S
Sbjct: 61  EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPAS 120
Query: 152 PLNSYAAALLNNKEG 166
           P N  AA L  + + 
Sbjct: 121 PANVEAATLFKDHKS 135

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+QKEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 9   KRIQKELQDLQRDPP-AQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPF 67
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 68  KPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPL 124

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+QKEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 6   KRIQKELSDLQRDPP-AHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 64
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP++ F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 65  KPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPL 121

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+QKEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 22  KRIQKELSDLQRDPP-AHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 80
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP++ F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 81  KPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPL 137

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+QKEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 10  KRIQKELSDLQRDPP-AHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP++ F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 69  KPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPL 125

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G + + Y G  + L++ FP DYPF
Sbjct: 24  KRINKELNDLSKDPP-TNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPF 82
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G ICLDIL+D+WS A     +LLSI SLL +PNP+ PL
Sbjct: 83  KPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPL 139

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 76/119 (63%), Gaps = 5/119 (4%)
Query: 37  QRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           +R+QKEL  L   G D     SA P G+ +F W  TI G   + Y+G  + L++ FP DY
Sbjct: 7   KRIQKELQDL---GRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 63
Query: 95  PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           PFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 64  PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 122

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score =  109 bits (273), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 78/124 (62%), Gaps = 2/124 (1%)
Query: 38  RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97
           RLQKEL  +        + A  +  + F W+G I+G +GT YEG  + L++  P DYP+ 
Sbjct: 27  RLQKELKDIENENVQ-EIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYN 85
Query: 98  PPQVKFETMCFHPNV-DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
           PP++KF T  +HPN+  Q G ICLD+L+++WS A   RT LLSIQ+LL +P P+ P ++ 
Sbjct: 86  PPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAE 145
Query: 157 AAAL 160
            A +
Sbjct: 146 VAKM 149

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score =  109 bits (273), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           S  +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP D
Sbjct: 3   SALKRINKELSDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 61
Query: 94  YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           YPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 62  YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 121

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 14  KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 73  KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 129

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           S ++R+ KEL  L         SA P G+ ++ W  +I G   + Y G  + LS+ FP D
Sbjct: 2   SSSKRIAKELSDLERDPP-TSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTD 60
Query: 94  YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           YPFKPP++ F T  +HPN++  GNICLDIL+D+WS A     +LLSI SLL + NP+ PL
Sbjct: 61  YPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPL 120

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 4   KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 63  KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 119

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 14  KRINKELSDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 73  KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 129

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 6   KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 65  KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 121

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 3   KRINKELSDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 62  KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 118

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 6   KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 65  KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 121

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 9   KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 67
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 68  KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 124

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 22  KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 81  KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 137

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 12  KRINKELSDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 70
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 71  KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 127

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 83/136 (61%), Gaps = 2/136 (1%)
Query: 33  TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
            S+ +R+ KE   L+ S    G++A P  +++  +  TIEG + + YE   ++L L  P 
Sbjct: 2   ASLPKRIIKETEKLV-SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 93  DYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152
           DYP + P+V+F T  +HPN+D+ G ICLD+L+  WS A   RT+LLSIQ+LL  PNP  P
Sbjct: 61  DYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 153 L-NSYAAALLNNKEGC 167
           L N  A   + N++G 
Sbjct: 121 LANDVAEDWIKNEQGA 136

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 83/137 (60%), Gaps = 2/137 (1%)
Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
             S+ +R+ KE   L+ S    G++A P  +++  +  TIEG + + YE   ++L L  P
Sbjct: 3   AASLPKRIIKETEKLV-SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLP 61
Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
            DYP + P+V+F T  +HPN+D+ G ICLD+L+  WS A   RT+LLSIQ+LL  PNP  
Sbjct: 62  DDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPND 121
Query: 152 PL-NSYAAALLNNKEGC 167
           PL N  A   + N++G 
Sbjct: 122 PLANDVAEDWIKNEQGA 138

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 6   KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+ICLDIL+ +W  A     +LLSI SLL +PNP+ PL
Sbjct: 65  KPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPL 121

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Query: 33  TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
           ++  +R+QKEL  + +       SA P+G++I+ W  TI G  G++YEG  + L + F  
Sbjct: 2   STSAKRIQKELAEITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSP 60
Query: 93  DYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152
           DYPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  P
Sbjct: 61  DYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 120
Query: 153 L-NSYAAALLNNK 164
           L  S A   + N+
Sbjct: 121 LVGSIATQYMTNR 133

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 6   KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+ICLD L+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 65  KPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPL 121

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  T  G   + Y+G  + L++ FP DYPF
Sbjct: 6   KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 65  KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 121

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 35  VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
            ++R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DY
Sbjct: 1   ASKRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 59
Query: 95  PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           PFKPP+V F T  +HPN++  G+I LDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 60  PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPL 118

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 2/140 (1%)
Query: 26  SPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYK 85
           S N+   ++  +R+QKEL  + +       SA P+G++I+ W  TI G  G++YEG  + 
Sbjct: 40  SKNSKLLSTSAKRIQKELADITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFF 98
Query: 86  LSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLG 145
           L + F  +YPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL 
Sbjct: 99  LDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLT 158
Query: 146 EPNPESPL-NSYAAALLNNK 164
           + NP  PL  S A   + N+
Sbjct: 159 DCNPADPLVGSIATQYMTNR 178

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 7   KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 65
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+I LDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 66  KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 122

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 78/134 (58%), Gaps = 2/134 (1%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KE   L+      G+ A P+  +   +   I G + + +EG ++KL L  P +YP 
Sbjct: 4   RRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 62
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NS 155
             P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL N 
Sbjct: 63  AAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 122
Query: 156 YAAALLNNKEGCIH 169
            A     N+   I 
Sbjct: 123 VAEQWKTNEAQAIE 136

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           +  + +R+ KE   L+      G+ A P+  +   +   I G + + +EG ++KL L  P
Sbjct: 3   SAGLPRRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLP 61
Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
            +YP   P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ 
Sbjct: 62  EEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 121
Query: 152 PL-NSYAAALLNNKEGCIH 169
           PL N  A     N+   I 
Sbjct: 122 PLANDVAEQWKTNEAQAIE 140

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 78/134 (58%), Gaps = 2/134 (1%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KE   L+      G+ A P+  +   +   I G + + +EG ++KL L  P +YP 
Sbjct: 6   RRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 64
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NS 155
             P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL N 
Sbjct: 65  AAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 124
Query: 156 YAAALLNNKEGCIH 169
            A     N+   I 
Sbjct: 125 VAEQWKTNEAQAIE 138

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 4   KRINKELSDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+I LDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 63  KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 119

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 78/134 (58%), Gaps = 2/134 (1%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KE   L+      G+ A P+  +   +   I G + + +EG ++KL L  P +YP 
Sbjct: 9   RRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 67
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NS 155
             P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL N 
Sbjct: 68  AAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 127
Query: 156 YAAALLNNKEGCIH 169
            A     N+   I 
Sbjct: 128 VAEQWKTNEAQAIE 141

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 78/134 (58%), Gaps = 2/134 (1%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KE   L+      G+ A P+  +   +   I G + + +EG ++KL L  P +YP 
Sbjct: 11  RRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 69
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NS 155
             P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL N 
Sbjct: 70  AAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 129
Query: 156 YAAALLNNKEGCIH 169
            A     N+   I 
Sbjct: 130 VAEQWKTNEAQAIE 143

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 22  KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+I LDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 81  KPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 137

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+QKEL  L          A P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 10  KRIQKELSDLQRDPP-AHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP++ F T  +HPN++  G+I LDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 69  KPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPL 125

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/136 (40%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
Query: 33  TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
            S+ +R+ KE   L+ S    G++A P  +++  +  TIEG + + YE   ++L L  P 
Sbjct: 2   ASLPKRIIKETEKLV-SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 93  DYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152
           DYP + P+V+F T  +HPN+D+ G I LD+L+  WS A   RT+LLSIQ+LL  PNP  P
Sbjct: 61  DYPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 153 L-NSYAAALLNNKEGC 167
           L N  A   + N++G 
Sbjct: 121 LANDVAEDWIKNEQGA 136

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 6   KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HPN++  G+I LDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 65  KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 121

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 54  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV- 112
           GVSA   G  I  W G I G  GT YEG  + L +  P DYP+ PP++KF T  +HPN+ 
Sbjct: 64  GVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNIS 123
Query: 113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 161
            Q G ICLDIL+ +WS A   RT LLSIQ++L +P P  P ++  A ++
Sbjct: 124 SQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM 172

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 81/136 (59%), Gaps = 2/136 (1%)
Query: 33  TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
            S+ +R+ KE   L+ S    G++A P  +++  +  TIEG + + YE   ++L L  P 
Sbjct: 2   ASLPKRIIKETEKLV-SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 93  DYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152
           DYP + P+V+F T  +HP +D+ G I LD+L+  WS A   RT+LLSIQ+LL  PNP  P
Sbjct: 61  DYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 153 L-NSYAAALLNNKEGC 167
           L N  A   + N++G 
Sbjct: 121 LANDVAEDWIKNEQGA 136

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+ KEL  L          A P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 4   KRIHKELNDLARDPP-AQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           KPP+V F T  +HP ++  G+I LDIL+ +WS A     +LLSI SLL +PNP+ PL
Sbjct: 63  KPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 119

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 35  VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           + + + KE+ +L     D G+  FP  E +     TIEG +GT Y G  +++ L    D+
Sbjct: 14  IIRLVYKEVTTLTADPPD-GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDF 72
Query: 95  PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
           P  PP+  F T  FHPNV   G IC+++L+  W++    R +LL+I+ LL  PNPES LN
Sbjct: 73  PASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALN 132
Query: 155 SYAAALL 161
             A  LL
Sbjct: 133 EEAGRLL 139

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 13/135 (9%)
Query: 39  LQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKP 98
           L+K+L  +     D   +   +   I+ W   + G   T+YEG  +K  L FP DYP KP
Sbjct: 8   LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 99  PQVKFETMCFHPNVDQYGNICLDILQD-------------KWSSAYDCRTILLSIQSLLG 145
           P++KF +  +HPN+D+ GN+C+ IL D             +W   +   TILLS+ S+L 
Sbjct: 68  PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 127
Query: 146 EPNPESPLNSYAAAL 160
           +PN ESP N  AA +
Sbjct: 128 DPNFESPANVDAAKM 142

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           S  +R+ KE+ ++           F     I    GT  G  GT YEG  + + +  P++
Sbjct: 1   SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60
Query: 94  YPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152
           YPFKPP+++F+T  +HPN+    G ICLDIL++ WS     ++ L+S+Q+LL  P P  P
Sbjct: 61  YPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDP 120
Query: 153 LNSYAA 158
            ++  A
Sbjct: 121 QDAEVA 126

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 5/120 (4%)
Query: 38  RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97
           RL++EL  ++ +    G++ + + + +      I GG  T YE   +KL +  P  YPF+
Sbjct: 8   RLKREL-HMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFE 66
Query: 98  PPQVKFETMCFHPNVDQYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           PPQ++F T  +HPN+D  G ICLD+L    +  W  + +  T+L SIQ L+ EPNP+ PL
Sbjct: 67  PPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPL 126

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Query: 33  TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
           +S  +R+ KE+ ++           F     I    GT  G  GT YEG  + + +  P+
Sbjct: 1   SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 93  DYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
           +YPFKPP+++F+T  +HPN+    G ICLDIL++ WS     ++ L+S+Q+LL  P P  
Sbjct: 61  EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPND 120
Query: 152 PLNSYAA 158
           P ++  A
Sbjct: 121 PQDAEVA 127

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 72/115 (62%), Gaps = 3/115 (2%)
Query: 54  GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113
           G++A P  E +  W   IEG + ++++GL ++L++ F  +Y + PP VKF T+ FHPNVD
Sbjct: 42  GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101
Query: 114 QY-GNICLDILQ--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 165
            + G  C+D L   +KW++ Y   +ILL++Q +L  P  E+P+N  AA +L   E
Sbjct: 102 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDE 156

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 14/119 (11%)
Query: 55  VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114
           V+   EG+ ++ W   I G   T YEG  +K  L+FP+DYP+ PP  +F T  +HPN+ +
Sbjct: 29  VTLVDEGD-LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 87
Query: 115 YGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL 160
            G++C+ IL              ++W+   + RTILLS+ SLL EPN  SP N  A+ +
Sbjct: 88  TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVM 146

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 14/119 (11%)
Query: 55  VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114
           V+   EG+ ++ W   I G   T YEG  +K  L+FP+DYP+ PP  +F T  +HPN+ +
Sbjct: 26  VTLVDEGD-LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 84
Query: 115 YGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL 160
            G++C+ IL              ++W+   + RTILLS+ SLL EPN  SP N  A+ +
Sbjct: 85  TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVM 143

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 13/133 (9%)
Query: 39  LQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKP 98
           L+++L  L  +  +   +   +   ++ W   I G   T+YEG  +K  L FP DYP +P
Sbjct: 22  LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 99  PQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLG 145
           P++KF T  +HPNVD+ G++C+ IL             +++W   +   TI++S+ S+L 
Sbjct: 82  PKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLA 141
Query: 146 EPNPESPLNSYAA 158
           +PN +SP N  AA
Sbjct: 142 DPNGDSPANVDAA 154

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 59  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA 157
           +CL IL++   W  A   + ILL IQ LL EPN +SP  + A
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEA 136

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 59  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGT 94
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA 157
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 136

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 59  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA 157
           +CL IL++   W  A   + ILL IQ LL EPN ++P  + A
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEA 136

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 59  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 33  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 92
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA 157
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A
Sbjct: 93  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 134

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 59  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 34  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA 157
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A
Sbjct: 94  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 135

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 59  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 34  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA 157
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A
Sbjct: 94  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 135

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 59  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA 157
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 136

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 59  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA 157
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A
Sbjct: 92  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 59  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 37  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 96
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA 157
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A
Sbjct: 97  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 138

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           + ++RL KEL  +   G     +   +  ++ TW G I       Y+  ++++ + FP +
Sbjct: 2   AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPD-NPPYDKGAFRIEINFPAE 60
Query: 94  YPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESP 152
           YPFKPP++ F+T  +HPN+D+ G +CL ++  + W  A     ++ S+ +L+ +P PE P
Sbjct: 61  YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 153 LNS 155
           L +
Sbjct: 121 LRA 123

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           + + ++RL KEL  +   G     +   +  ++ TW G I       Y+  ++++ + FP
Sbjct: 2   SMAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPD-NPPYDKGAFRIEINFP 60
Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPE 150
            +YPFKPP++ F+T  +HPN+D+ G +CL ++  + W  A     ++ S+ +L+ +P PE
Sbjct: 61  AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPE 120
Query: 151 SPLNSYAA 158
            PL +  A
Sbjct: 121 HPLRADLA 128

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 59  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHP V   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGT 94
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA 157
           +CL IL++   W  A   + ILL IQ LL EPN + P  + A
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 136

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 32  TTSVTQRLQKELMSLMM-SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 90
            ++   R+QK++  L +    D+   +F + + +  +   I   +G  Y+   +  S + 
Sbjct: 4   ASAAQLRIQKDINELNLPKTCDI---SFSDPDDLLNFKLVICPDEG-FYKSGKFVFSFKV 59
Query: 91  PLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPE 150
              YP  PP+VK ET  +HPN+D  GN+CL+IL++ W       +I+  +Q L  EPNPE
Sbjct: 60  GQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPE 119
Query: 151 SPLNSYAAALLNN 163
            PLN  AA +L N
Sbjct: 120 DPLNKEAAEVLQN 132

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 33  TSVTQRLQKELMSLM------MSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKL 86
            S+ +RLQKEL++L       M+  +  V       SI  WI  +EG  GT+YEG  ++L
Sbjct: 21  ASMQKRLQKELLALQNDPPPGMTLNEKSVQ-----NSITQWIVDMEGAPGTLYEGEKFQL 75
Query: 87  SLRFPLDYPFKPPQVKF--ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL 144
             +F   YPF  PQV F  E +  HP+V   G+ICL IL + WS A   +++ LSI S+L
Sbjct: 76  LFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISML 135

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 73  GGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAY 131
           G +GT YEG  +K+ +  P  YPFK P + F    FHPN+D+  G +CLD++   W++ Y
Sbjct: 59  GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 132 DCRTILLS-IQSLLGEPNPESPLNSYAAAL 160
           D   I  S +  LL  PNP  PLN  AAA+
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAM 148

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 50/86 (58%)
Query: 78  MYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTIL 137
            Y+   +  S +    YP  PP+VK ETM +HPN+D  GN+ L+IL++ W       +I+
Sbjct: 67  FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSII 126
Query: 138 LSIQSLLGEPNPESPLNSYAAALLNN 163
             +Q L  EPNPE PLN  AA +L N
Sbjct: 127 YGLQYLFLEPNPEDPLNKEAAEVLQN 152

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRF 90
           + +  +RL KEL  L+      G+ A P+ E+ IF W   I+G   T Y    +   L F
Sbjct: 2   SKTAQKRLLKELQQLIKDSPP-GIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 60
Query: 91  PLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTIL 137
           P DYP  PP++ F     HPN+   G +C+ IL             +++WS       IL
Sbjct: 61  PKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKIL 120
Query: 138 LSIQSLLGEPNPESPLNSYAAALLNN 163
           LS+ S+L EPN ES  N  A  L  +
Sbjct: 121 LSVMSMLSEPNIESGANIDACILWRD 146

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 59  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA 157
           + L IL++   W  A   + ILL IQ LL EPN + P  + A
Sbjct: 92  VSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Query: 33  TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
           TS+T++ Q +   L+M+G DL ++      S   +     G  GT YEG  +K+ +  P 
Sbjct: 2   TSLTRK-QCDFTKLIMAGYDLELN----NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPD 56
Query: 93  DYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTIL-LSIQSLLGEPNPE 150
           DYPF  P + F     HPNVD+  G++CLD++   W+  Y    +  + +  LL  PNP 
Sbjct: 57  DYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPS 116
Query: 151 SPLNSYAAALL 161
            PLNS AA+LL
Sbjct: 117 DPLNSDAASLL 127

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 61  GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICL 120
           G  +  W   I G   T +EG  YKL++ FP +YP +PP+ +F    FHPNV   G +CL
Sbjct: 41  GLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCL 100
Query: 121 DILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 163
            IL ++  W  A   + ILL IQ LL +PN  SP  + A  +   
Sbjct: 101 SILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKK 145

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 59  PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           P+G  ++  W   I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G 
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA 157
           + L IL++   W  A   + ILL IQ LL EPN + P  + A
Sbjct: 92  VXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 37  QRLQKELMSLM----MSGGDLGVSAFPEGESIFTWI-GTIEGGKGTMYEGLSYKLSLRFP 91
           QR+++E   ++     S   + V    E    FT + G I G   T YEG  Y+L ++ P
Sbjct: 9   QRIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKIP 65
Query: 92  LDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPE 150
             YPF PP+V+F T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    P+
Sbjct: 66  ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 125
Query: 151 SPLNSYAA 158
            P ++  A
Sbjct: 126 DPQDAVVA 133

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 37  QRLQKELMSLM----MSGGDLGVSAFPEGESIFTWI-GTIEGGKGTMYEGLSYKLSLRFP 91
           QR+++E   ++     S   + V    E    FT + G I G   T YEG  Y+L ++ P
Sbjct: 8   QRIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKIP 64
Query: 92  LDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPE 150
             YPF PP+V+F T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    P+
Sbjct: 65  ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 124
Query: 151 SPLNSYAA 158
            P ++  A
Sbjct: 125 DPQDAVVA 132

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
Query: 36  TQRLQKELMSLM----MSGGDLGVSAFPEGESIFTWI-GTIEGGKGTMYEGLSYKLSLRF 90
            QR+++E   ++     S   + V    E    FT + G I G   T YEG  Y+L ++ 
Sbjct: 10  VQRIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKI 66
Query: 91  PLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNP 149
           P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    P
Sbjct: 67  PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEP 126
Query: 150 ESPLNSYAA 158
           + P ++  A
Sbjct: 127 DDPQDAVVA 135

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 74/130 (56%), Gaps = 9/130 (6%)
Query: 35  VTQRLQKE----LMSLMMSGGDLGVSAFPEGESIFTWI-GTIEGGKGTMYEGLSYKLSLR 89
             QR+++E    L S   S   + V    E    FT + G I G   T YEG  Y+L ++
Sbjct: 58  AVQRIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIK 114
Query: 90  FPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPN 148
            P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    
Sbjct: 115 IPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAE 174
Query: 149 PESPLNSYAA 158
           P+ P ++  A
Sbjct: 175 PDDPQDAVVA 184

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 74/130 (56%), Gaps = 9/130 (6%)
Query: 35  VTQRLQKELMSLM----MSGGDLGVSAFPEGESIFTWI-GTIEGGKGTMYEGLSYKLSLR 89
             QR+++E   ++     S   + V    E    FT + G I G   T YEG  Y+L ++
Sbjct: 22  AVQRIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIK 78
Query: 90  FPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPN 148
            P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    
Sbjct: 79  IPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAE 138
Query: 149 PESPLNSYAA 158
           P+ P ++  A
Sbjct: 139 PDDPQDAVVA 148

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGES-----IFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           QRLQ+E           G  A P  ++     +  W   I G +GT + G  Y +++ +P
Sbjct: 9   QRLQEERKKWRKDH-PFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 67
Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNP 149
            +YP KPP+VKF    +HPNV   G ICL IL +   W  A   + I+L +Q LL  PNP
Sbjct: 68  NEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNP 127
Query: 150 ESP 152
            SP
Sbjct: 128 NSP 130

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGES-----IFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           QRLQ+E           G  A P  ++     +  W   I G +GT + G  Y +++ +P
Sbjct: 7   QRLQEERKKWRKDH-PFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 65
Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNP 149
            +YP KPP+VKF    +HPNV   G ICL IL +   W  A   + I+L +Q LL  PNP
Sbjct: 66  NEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNP 125
Query: 150 ESP 152
            SP
Sbjct: 126 NSP 128

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           +  +RL  E   L ++  +  V+     E+ F W   I G + T +E   +   L FPLD
Sbjct: 7   TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 66
Query: 94  YPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSI 140
           YP  PP+++F    FHPN+   G +C+ IL              ++WS       ILLS+
Sbjct: 67  YPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 126
Query: 141 QSLLGEPNPESPLNSYAAALLNN 163
            S+L EPN ES  N  A+ +  +
Sbjct: 127 VSMLAEPNDESGANVDASKMWRD 149

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           +  +RL  E   L ++  +  V+     E+ F W   I G + T +E   +   L FPLD
Sbjct: 3   TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 62
Query: 94  YPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSI 140
           YP  PP+++F    FHPN+   G +C+ IL              ++WS       ILLS+
Sbjct: 63  YPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 122
Query: 141 QSLLGEPNPESPLNSYAAALLNN 163
            S+L EPN ES  N  A+ +  +
Sbjct: 123 VSMLAEPNDESGANVDASKMWRD 145

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           +  +RL  E   L ++  +  V+     E+ F W   I G + T +E   +   L FPLD
Sbjct: 6   TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 65
Query: 94  YPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSI 140
           YP  PP+++F    FHPN+   G +C+ IL              ++WS       ILLS+
Sbjct: 66  YPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 125
Query: 141 QSLLGEPNPESPLNSYAAALLNN 163
            S+L EPN ES  N  A+ +  +
Sbjct: 126 VSMLAEPNDESGANVDASKMWRD 148

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           +  +RL  E   L ++  +  V+     E+ F W   I G + T +E   +   L FPLD
Sbjct: 9   TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 68
Query: 94  YPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSI 140
           YP  PP+++F    FHPN+   G +C+ IL              ++WS       ILLS+
Sbjct: 69  YPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 128
Query: 141 QSLLGEPNPESPLNSYAAALLNN 163
            S+L EPN ES  N  A+ +  +
Sbjct: 129 VSMLAEPNDESGANVDASKMWRD 151

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 67  WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQD 125
           W+   +G +GT YE  ++ L ++ P DYPFK P + F     HPNVD+  G++CLD++  
Sbjct: 41  WV-EFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQ 99
Query: 126 KWSSAYDCRTIL-LSIQSLLGEPNPESPLNSYAAALLN 162
            W+  Y    I  + +  LL  PNP  PLN  AA LL+
Sbjct: 100 TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLH 137

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 87  SLRFPLD----YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQS 142
           S+ F LD    YP +PP+V      FHPN+D  GN+CL+IL++ WS A D ++I+  +  
Sbjct: 81  SINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLF 140
Query: 143 LLGEPNPESPLNSYAAALL 161
           L  EPNP  PLN  AA LL
Sbjct: 141 LFLEPNPNDPLNKDAAKLL 159

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 36  TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYP 95
           + R+ KEL  L         +   +  ++  W   +   +   Y   ++ L + FP +YP
Sbjct: 3   SMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPP-YHLKAFNLRISFPPEYP 61
Query: 96  FKPPQVKFETMCFHPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
           FKPP +KF T  +HPNVD+ G ICL I+  + W        +L ++  L+  PN   PL 
Sbjct: 62  FKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLR 121
Query: 155 SYAAALL 161
              A LL
Sbjct: 122 MDLADLL 128

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 36  TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYP 95
           + R+ KEL  L         +   +  ++  W   +   +   Y   ++ L + FP +YP
Sbjct: 6   SMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPP-YHLKAFNLRISFPPEYP 64
Query: 96  FKPPQVKFETMCFHPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
           FKPP +KF T  +HPNVD+ G ICL I+  + W        +L ++  L+  PN   PL 
Sbjct: 65  FKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLR 124
Query: 155 SYAAALL 161
              A LL
Sbjct: 125 MDLADLL 131

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 38  RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97
           R+QKEL + + +   +  +      +I  WI    G + T+Y    YKL + FP DYP K
Sbjct: 10  RIQKELHNFL-NNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLK 68
Query: 98  PPQVKF-ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLG 145
           PP V F +    H +V   G+ICL +L D ++ +     ++LSI S+L 
Sbjct: 69  PPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 117

>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 38  RLQKELMSLMMSGG-DLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           R+QKEL + + +   +  +   P   +I  WI    G + T+Y    YK+ + FP +YP 
Sbjct: 24  RIQKELNNFLKNPPINCTIDVHPS--NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPL 81
Query: 97  KPPQVKF-ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLG 145
           KPP V F +    H +V   G+ICL +L D ++ +     ++LSI S+L 
Sbjct: 82  KPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLS 131

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 67  WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQY-GNICLDILQ 124
           W   I G   T YE   +++ +  P  YP  PP++ F +    H NV    G ICL+IL+
Sbjct: 50  WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 125 -DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 161
            ++W+  +D    + ++  LL EP  +SPL+    A++
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAII 147

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 67  WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQY-GNICLDILQ 124
           W   I G   T YE   +++ +  P  YP  PP++ F +    H NV    G ICL+IL+
Sbjct: 50  WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILK 109
Query: 125 -DKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
            ++W+  +D    + ++  LL EP  +SPL+
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVSDSPLD 140

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 67  WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQY-GNICLDILQ 124
           W   I G   T YE   +++ +  P  YP  PP++ F +    H NV    G ICL+IL+
Sbjct: 50  WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 125 -DKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
            ++W+  +D    + ++  LL EP  +SPL+
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVCDSPLD 140

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 33  TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
           T+ TQRL+++ + +        + A P   +I  W   + G + T YEG  Y   L FP 
Sbjct: 13  TTATQRLKQDYLRIKKDPVPY-ICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPR 71
Query: 93  DYPFKPPQVKFETMCFHPNVDQYGN--ICLDILQ---DKWSSAYDCRTILLSIQSLLGEP 147
           ++PFKPP +   T    PN     N  +CL I     D W+ A+   TIL  + S + E 
Sbjct: 72  EFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEK 127
Query: 148 NP 149
            P
Sbjct: 128 GP 129

>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma Cruzi Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 60  EGESIFTWIGTIEGGKGTMYEGL--SYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           + ++I+ WI  ++    ++Y G   +Y+LS+ F  DYP +PP V+F T  + P V   G 
Sbjct: 45  DTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGG 104
Query: 118 ICLDILQDKWS 128
           IC  ++ D W+
Sbjct: 105 ICDRMVNDFWT 115

>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 63  SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC--- 119
           ++  W  TI G  GT++E   Y L++    +YP  PP VKF+T      VD  G +    
Sbjct: 53  TLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNN 112
Query: 120 LDILQDKWSSAYDCRTILLSI-QSLLGEPNPESPLNSYAAALLNN 163
           L IL++ W+  Y   TIL+S+ Q +L   N   P  +      NN
Sbjct: 113 LHILKN-WNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156

>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 63  SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC--- 119
           ++  W  TI G  GT++E   Y L++    +YP  PP VKF+T      VD  G +    
Sbjct: 57  TLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNN 116
Query: 120 LDILQDKWSSAYDCRTILLSI-QSLLGEPNPESP 152
           L IL++ W+  Y   TIL+S+ Q +L   N   P
Sbjct: 117 LHILKN-WNRNYTIETILISLRQEMLSSANKRLP 149

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 58  FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           FP+   +  +  T+   +G  Y+G  ++     P  Y   PP+VK  T  +HPN+ + G 
Sbjct: 38  FPDPNKLHCFQLTVTPDEG-YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGE 96
Query: 118 ICLDILQDK------WSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAA-LLNNKE 165
           ICL +L++       W+     + ++  + SL  +  N + PLN  AA   L +KE
Sbjct: 97  ICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKE 152

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 58  FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
           FP+   +  +  T+   +G  Y+G  ++     P  Y   PP+VK  T  +HPN+ + G 
Sbjct: 38  FPDPNKLHCFQLTVTPDEG-YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGE 96
Query: 118 ICLDILQDK------WSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAA-LLNNKE 165
           ICL +L++       W+     + ++  + SL  +  N + PLN  AA   L +KE
Sbjct: 97  ICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKE 152

>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap Repeat- Containing Protein 6 Length = 323

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 71  IEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET-----MCFHPNVDQYGNICLDIL-- 123
           I G   T Y    ++  + FP DYP  PP V  ET     + F+PN+   G +CL IL  
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 124 -----QDKWS-SAYDCRTILLSIQSLL 144
                ++KW+        +L+S+QSL+
Sbjct: 176 WHGRPEEKWNPQTSSFLQVLVSVQSLI 202

>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 142

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 38  RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           RL +EL       GD  VS   E +   T   W G I G   T+YE   Y L +     Y
Sbjct: 11  RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKY 70
Query: 95  PFKPPQVKFETMCFHPNVDQYGNI----CLDILQDKWSSAYDCRTILLSIQSLL 144
           P  PP V+F T      V+    +     + +L  KW ++Y  + +L  ++ L+
Sbjct: 71  PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 123

>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating Enzyme Variant Uev1a Length = 170

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 38  RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           RL +EL       GD  VS   E +   T   W G I G   T+YE   Y L +     Y
Sbjct: 39  RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 98
Query: 95  PFKPPQVKFETMCFHPNVDQYGNI----CLDILQDKWSSAYDCRTILLSIQSLL 144
           P  PP V+F T      V+    +     + +L  KW ++Y  + +L  ++ L+
Sbjct: 99  PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 151

>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2 Variant 1 (Uev- 1) Length = 160

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 38  RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           RL +EL       GD  VS   E +   T   W G I G   T+YE   Y L +     Y
Sbjct: 29  RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 88
Query: 95  PFKPPQVKFETMCFHPNVDQYGNI----CLDILQDKWSSAYDCRTILLSIQSLL 144
           P  PP V+F T      V+    +     + +L  KW ++Y  + +L  ++ L+
Sbjct: 89  PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 141

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	6e-74
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	2e-71
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	5e-68
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	1e-67
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	1e-67
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	3e-67
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	3e-67
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	4e-67
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	5e-67
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	6e-67
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	1e-66
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	4e-66
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	4e-66
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	3e-65
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	5e-65
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	1e-64
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	4e-63
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	5e-63
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	6e-63
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	1e-62
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	2e-62
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	4e-62
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	9e-62
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	3e-61
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	8e-60
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	4e-59
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	6e-59
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	7e-59
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	2e-58
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	2e-58
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	4e-58
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	5e-58
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	2e-57
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	3e-57
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	5e-57
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	7e-57
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	1e-56
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	1e-56
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	2e-56
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	1e-55
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	1e-55
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	3e-55
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	2e-54
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	4e-54
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	1e-51
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	9e-51
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	3e-49
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	7e-48
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	1e-46
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	1e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	2e-07

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  219 bits (559), Expect = 6e-74
 Identities = 88/153 (57%), Positives = 110/153 (71%), Gaps = 1/153 (0%)

Query: 13  RATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIE 72
            AT+ A++++            V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI 
Sbjct: 9   AATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIH 67

Query: 73  GGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYD 132
           G  GT+YE L YKLSL FP  YP+  P VKF T C+HPNVD  GNI LDIL++KWS+ YD
Sbjct: 68  GAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYD 127

Query: 133 CRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 165
            RTILLSIQSLLGEPN +SPLN++AA L  N  
Sbjct: 128 VRTILLSIQSLLGEPNIDSPLNTHAAELWKNPT 160

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  211 bits (540), Expect = 2e-71
 Identities = 81/137 (59%), Positives = 111/137 (81%), Gaps = 1/137 (0%)

Query: 29  TVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSL 88
           + +  SV++RLQ+EL +L+MSG D G++AFP+G+++F W+ T++G K T+YE L YKL+L
Sbjct: 4   SKERHSVSKRLQQELRTLLMSG-DPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTL 62

Query: 89  RFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPN 148
            FP DYP+KPP VKF T C+HPNVDQ GNICLDIL++ W+++YD RTILLS+QSLLGEPN
Sbjct: 63  EFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPN 122

Query: 149 PESPLNSYAAALLNNKE 165
             SPLN+ AA + +N+ 
Sbjct: 123 NASPLNAQAADMWSNQT 139

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  203 bits (519), Expect = 5e-68
 Identities = 58/153 (37%), Positives = 82/153 (53%), Gaps = 3/153 (1%)

Query: 14  ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG 73
            ++        S    +      +R+ KEL  L         SA P G+ +F W  TI G
Sbjct: 2   GSSHHHHHHS-SGRENLYFQGALKRINKELNDLSKDPPT-NCSAGPVGDDMFHWQATIMG 59

Query: 74  GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
            + + Y G  + L++ FP DYPFKPP+V F T  +HPN++  G ICLDIL+D+WS A   
Sbjct: 60  PEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTI 119

Query: 134 RTILLSIQSLLGEPNPESPLNSYAAAL-LNNKE 165
             +LLSI SLL +PNP+ PL    A L  +++ 
Sbjct: 120 SKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRM 152

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  202 bits (517), Expect = 1e-67
 Identities = 58/135 (42%), Positives = 78/135 (57%), Gaps = 2/135 (1%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           +T   +RL ++   +       GVSA P  +++  W   I G   T YE  +++L L F 
Sbjct: 2   STPARRRLMRDFKRMKEDA-PPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60

Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
            +YP KPP VKF +  FHPNV   G ICLDILQ++W+  YD  +IL SIQSL  +PNP S
Sbjct: 61  EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPAS 120

Query: 152 PLNSYAAAL-LNNKE 165
           P N  AA L  ++K 
Sbjct: 121 PANVEAATLFKDHKS 135

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  202 bits (516), Expect = 1e-67
 Identities = 54/136 (39%), Positives = 79/136 (58%), Gaps = 2/136 (1%)

Query: 31  DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 90
            +  + +R+ KE   L+      G+ A P+  +   +   I G + + +EG ++KL L  
Sbjct: 2   GSAGLPRRIIKETQRLLAEP-VPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFL 60

Query: 91  PLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPE 150
           P +YP   P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+
Sbjct: 61  PEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPD 120

Query: 151 SPLNSYAAAL-LNNKE 165
            PL +  A     N+ 
Sbjct: 121 DPLANDVAEQWKTNEA 136

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  201 bits (513), Expect = 3e-67
 Identities = 60/135 (44%), Positives = 81/135 (60%), Gaps = 2/135 (1%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           +T   +RL ++   L       G+S  P+  +I  W   I G   T ++G ++KLSL+F 
Sbjct: 2   STPARKRLMRDFKRLQQDP-PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60

Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
            DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP S
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120

Query: 152 PLNSYAAAL-LNNKE 165
           P NS AA +   +K 
Sbjct: 121 PANSEAARMYSESKR 135

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  200 bits (512), Expect = 3e-67
 Identities = 59/132 (44%), Positives = 79/132 (59%), Gaps = 2/132 (1%)

Query: 35  VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           + +R+ KE  +L       G+ A P  E+   +   I G  GT YEG +YKL L  P  Y
Sbjct: 2   IPRRITKETQNLANEPPP-GIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60

Query: 95  PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
           P +PP+V+F T  +HPN+D+ G ICLDIL+DKWS A   RT+LLSIQ+LL  P P+ PL+
Sbjct: 61  PMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLD 120

Query: 155 SYAAAL-LNNKE 165
           S  A     +K 
Sbjct: 121 SKVAEHFKQDKN 132

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  201 bits (513), Expect = 4e-67
 Identities = 58/149 (38%), Positives = 82/149 (55%), Gaps = 3/149 (2%)

Query: 18  ASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGT 77
                P+S       +   +R+ KEL  L         SA P G+ +F W  TI G   +
Sbjct: 4   HHHHHPMSGLVP-RGSMALKRIHKELNDLARDP-PAQCSAGPVGDDMFHWQATIMGPNDS 61

Query: 78  MYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTIL 137
            Y+G  + L++ FP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +L
Sbjct: 62  PYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVL 121

Query: 138 LSIQSLLGEPNPESPLNSYAAAL-LNNKE 165
           LSI SLL +PNP+ PL    A +   ++E
Sbjct: 122 LSICSLLCDPNPDDPLVPEIARIYKTDRE 150

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  200 bits (512), Expect = 5e-67
 Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 2/135 (1%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
              + + + KE+ +L     D G+  FP  E +     TIEG +GT Y G  +++ L   
Sbjct: 11  PPHIIRLVYKEVTTLTADPPD-GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLG 69

Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
            D+P  PP+  F T  FHPNV   G IC+++L+  W++    R +LL+I+ LL  PNPES
Sbjct: 70  KDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPES 129

Query: 152 PLNSYAAAL-LNNKE 165
            LN  A  L L N E
Sbjct: 130 ALNEEAGRLLLENYE 144

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  201 bits (514), Expect = 6e-67
 Identities = 60/162 (37%), Positives = 86/162 (53%), Gaps = 2/162 (1%)

Query: 5   PNPTVENLRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESI 64
            N   E    T      +   S N+   ++  +R+QKEL  + +       SA P+G++I
Sbjct: 19  SNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDP-PPNCSAGPKGDNI 77

Query: 65  FTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ 124
           + W  TI G  G++YEG  + L + F  +YPFKPP+V F T  +H N++  G ICLDIL+
Sbjct: 78  YEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK 137

Query: 125 DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKE 165
           D WS A     +LLSI SLL + NP  PL    A   + N+ 
Sbjct: 138 DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRA 179

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  199 bits (509), Expect = 1e-66
 Identities = 53/134 (39%), Positives = 81/134 (60%), Gaps = 2/134 (1%)

Query: 33  TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
            S+ +R+ KE   L+      G++A P  +++  +  TIEG + + YE   ++L L  P 
Sbjct: 4   ASLPKRIIKETEKLVSDPVP-GITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 62

Query: 93  DYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152
           DYP + P+V+F T  +HPN+D+ G ICLD+L+  WS A   RT+LLSIQ+LL  PNP  P
Sbjct: 63  DYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 122

Query: 153 LNSYAAAL-LNNKE 165
           L +  A   + N++
Sbjct: 123 LANDVAEDWIKNEQ 136

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  198 bits (505), Expect = 4e-66
 Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           +    +R+QKEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP
Sbjct: 2   SHMALKRIQKELQDLGRDP-PAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFP 60

Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
            DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ 
Sbjct: 61  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 120

Query: 152 PLNSYAAAL-LNNKE 165
           PL    A +   ++E
Sbjct: 121 PLVPEIARIYKTDRE 135

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  200 bits (511), Expect = 4e-66
 Identities = 55/155 (35%), Positives = 83/155 (53%), Gaps = 4/155 (2%)

Query: 14  ATAAASSKQPVSSPN-TVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIE 72
            ++           N     +    RLQKEL  +        + A  +  + F W+G I+
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSKELLRLQKELKDIENEN-VQEIDAHIKDSNFFEWVGFIK 60

Query: 73  GGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAY 131
           G +GT YEG  + L++  P DYP+ PP++KF T  +HPN+  Q G ICLD+L+++WS A 
Sbjct: 61  GPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPAL 120

Query: 132 DCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKE 165
             RT LLSIQ+LL +P P+ P ++  A +   N  
Sbjct: 121 TIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHA 155

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score =  196 bits (500), Expect = 3e-65
 Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 4/139 (2%)

Query: 32  TTSVTQRLQKELMSLMMS--GGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLR 89
                QR+++E   ++ S       +      E+     G I G   T YEG  Y+L ++
Sbjct: 6   ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIK 65

Query: 90  FPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPN 148
            P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    
Sbjct: 66  IPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAE 125

Query: 149 PESPLNSYAAAL-LNNKEG 166
           P+ P ++  A     N E 
Sbjct: 126 PDDPQDAVVANQYKQNPEM 144

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  196 bits (500), Expect = 5e-65
 Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 4/153 (2%)

Query: 14  ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG 73
           ++           P           L ++   L  +    G++A P  E +  W   IEG
Sbjct: 3   SSHHHHHHSSGLVPRGSMHGRAYLLLHRDFCDLKENN-YKGITAKPVSEDMMEWEVEIEG 61

Query: 74  GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQ--DKWSSA 130
            + ++++GL ++L++ F  +Y + PP VKF T+ FHPNVD   G  C+D L   +KW++ 
Sbjct: 62  LQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTN 121

Query: 131 YDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 163
           Y   +ILL++Q +L  P  E+P+N  AA +L  
Sbjct: 122 YTLSSILLALQVMLSNPVLENPVNLEAARILVK 154

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score =  196 bits (499), Expect = 1e-64
 Identities = 59/167 (35%), Positives = 80/167 (47%), Gaps = 14/167 (8%)

Query: 14  ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLM------------MSGGDLGVSAFPEG 61
           +       Q +++     T     RL KEL  +                   GVSA   G
Sbjct: 12  SGRENLYFQGMATAQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVG 71

Query: 62  ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICL 120
             I  W G I G  GT YEG  + L +  P DYP+ PP++KF T  +HPN+  Q G ICL
Sbjct: 72  GDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICL 131

Query: 121 DILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEG 166
           DIL+ +WS A   RT LLSIQ++L +P P  P ++  A + + N   
Sbjct: 132 DILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPL 178

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  191 bits (487), Expect = 4e-63
 Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 6/139 (4%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           +     RL++EL  L       G++ + + + +      I GG  T YE   +KL +  P
Sbjct: 2   SMQRASRLKRELHMLATEPPP-GITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIP 60

Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEP 147
             YPF+PPQ++F T  +HPN+D  G ICLD+L    +  W  + +  T+L SIQ L+ EP
Sbjct: 61  ERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEP 120

Query: 148 NPESPLNSYAAAL-LNNKE 165
           NP+ PL +  ++    NK 
Sbjct: 121 NPDDPLMADISSEFKYNKP 139

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  191 bits (488), Expect = 5e-63
 Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 6/147 (4%)

Query: 25  SSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTW----IGTIEGGKGTMYE 80
           SS    + ++   RL+++L SL +      ++     +S        +  I       Y 
Sbjct: 20  SSSIQPNLSAARIRLKRDLDSLDLPPTV-TLNVITSPDSADRSQSPKLEVIVRPDEGYYN 78

Query: 81  GLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSI 140
             S   +L F   YP +PP+V      FHPN+D  GN+CL+IL++ WS A D ++I+  +
Sbjct: 79  YGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGL 138

Query: 141 QSLLGEPNPESPLNSYAAALL-NNKEG 166
             L  EPNP  PLN  AA LL   ++ 
Sbjct: 139 LFLFLEPNPNDPLNKDAAKLLCEGEKE 165

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  191 bits (488), Expect = 6e-63
 Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 4/139 (2%)

Query: 32  TTSVTQRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLR 89
                QR+++E   ++ S       +      E+     G I G   T YEG  Y+L ++
Sbjct: 3   ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIK 62

Query: 90  FPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPN 148
            P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    
Sbjct: 63  IPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAE 122

Query: 149 PESPLNSYAAALL-NNKEG 166
           P+ P ++  A     N E 
Sbjct: 123 PDDPQDAVVANQYKQNPEM 141

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  190 bits (485), Expect = 1e-62
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 4/148 (2%)

Query: 20  SKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMY 79
            K+     ++   ++   R+QK++  L +      +S F + + +  +   I       Y
Sbjct: 12  QKKEEEKGSSKKASAAQLRIQKDINELNLPKT-CDIS-FSDPDDLLNFKLVI-CPDEGFY 68

Query: 80  EGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLS 139
           +   +  S +    YP  PP+VK ETM +HPN+D  GN+ L+IL++ W       +I+  
Sbjct: 69  KSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYG 128

Query: 140 IQSLLGEPNPESPLNSYAAALL-NNKEG 166
           +Q L  EPNPE PLN  AA +L NN+  
Sbjct: 129 LQYLFLEPNPEDPLNKEAAEVLQNNRRL 156

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  188 bits (480), Expect = 2e-62
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 19  SSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTM 78
           S           +  +   R+QKEL + + +   +  +      +I  WI    G + T+
Sbjct: 5   SRTVEKHIKTKYNLGNANYRIQKELNNFLKNP-PINCTIDVHPSNIRIWIVQYVGLENTI 63

Query: 79  YEGLSYKLSLRFPLDYPFKPPQVKFET-MCFHPNVDQYGNICLDILQDKWSSAYDCRTIL 137
           Y    YK+ + FP +YP KPP V F      H +V   G+ICL +L D ++ +     ++
Sbjct: 64  YANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLI 123

Query: 138 LSIQSLLGEPNPE 150
           LSI S+L     +
Sbjct: 124 LSIISMLSSAKEK 136

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score =  191 bits (487), Expect = 4e-62
 Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 4/158 (2%)

Query: 13  RATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMS--GGDLGVSAFPEGESIFTWIGT 70
             T                     QR+++E   ++ S       +      E+     G 
Sbjct: 36  LGTDDDDKAMADIGSEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGE 95

Query: 71  IEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSS 129
           I G   T YEG  Y+L ++ P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W++
Sbjct: 96  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 155

Query: 130 AYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEG 166
           A   RT+LLS+Q+LL    P+ P ++  A     N E 
Sbjct: 156 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEM 193

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  187 bits (478), Expect = 9e-62
 Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 4/136 (2%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
            ++   R+QK++  L +      +S F + + +  +   I       Y+   +  S +  
Sbjct: 4   ASAAQLRIQKDINELNLPKTC-DIS-FSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVG 60

Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
             YP  PP+VK ETM +HPN+D  GN+CL+IL++ W       +I+  +Q L  EPNPE 
Sbjct: 61  QGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPED 120

Query: 152 PLNSYAAALL-NNKEG 166
           PLN  AA +L NN+  
Sbjct: 121 PLNKEAAEVLQNNRRL 136

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  185 bits (471), Expect = 3e-61
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           +   R+QKEL + + +      +      +I  WI    G + T+Y    YKL + FP D
Sbjct: 6   NANYRIQKELHNFLNNPPI-NCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDD 64

Query: 94  YPFKPPQVKFET-MCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
           YP KPP V F      H +V   G+ICL +L D ++ +     ++LSI S+L     + 
Sbjct: 65  YPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  182 bits (465), Expect = 8e-60
 Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 9/148 (6%)

Query: 26  SPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGES-----IFTWIGTIEGGKGTMYE 80
             +   ++    RLQ+E           G  A P   S     +  W   I G   T +E
Sbjct: 2   HHHHHHSSLCKTRLQEERKQWRRDH-PFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWE 60

Query: 81  GLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDK--WSSAYDCRTILL 138
           G  YKL++ FP +YP +PP+ +F    FHPNV   G +CL IL ++  W  A   + ILL
Sbjct: 61  GGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILL 120

Query: 139 SIQSLLGEPNPESPLNSYAAAL-LNNKE 165
            IQ LL +PN  SP  + A  +   +K 
Sbjct: 121 GIQDLLDDPNIASPAQTEAYTMFKKDKV 148

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  180 bits (460), Expect = 4e-59
 Identities = 51/142 (35%), Positives = 67/142 (47%), Gaps = 9/142 (6%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGES-----IFTWIGTIEGGKGTMYEGLSYKL 86
           +     RL +E  +        G  A P         +  W   I G KGT +EG  +KL
Sbjct: 5   SGIALSRLAQERKAWRKDH-PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63

Query: 87  SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLL 144
            + F  DYP  PP+ KFE   FHPNV   G +CL IL++   W  A   + ILL IQ LL
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123

Query: 145 GEPNPESPLNSYAAAL-LNNKE 165
            EPN +SP  + A  +   N+ 
Sbjct: 124 NEPNIQSPAQAEAYTIYCQNRV 145

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  179 bits (457), Expect = 6e-59
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 5/128 (3%)

Query: 38  RLQKELMSLMMSGGDLGVSAFPEGE---SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           RL +EL       G    S         ++  W GTI G   + +E   Y LS+    +Y
Sbjct: 10  RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 69

Query: 95  PFKPPQVKFETMCFHPNVD-QYGNICLDILQDK-WSSAYDCRTILLSIQSLLGEPNPESP 152
           P  PP+V F +    P V+   G +  D    + W  AY   T+LL ++  +  P  +  
Sbjct: 70  PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKL 129

Query: 153 LNSYAAAL 160
                   
Sbjct: 130 RQPKEGET 137

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  181 bits (460), Expect = 7e-59
 Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 16/150 (10%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRF 90
           + S  + L  EL  L     + G       E  ++ W   I G   T YEG  +K  L+F
Sbjct: 5   SPSSQKALLLELKGLQEEPVE-GFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKF 63

Query: 91  PLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTIL 137
           P+DYP+ PP  +F T  +HPN+ + G++C+ IL              ++W+   + RTIL
Sbjct: 64  PIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTIL 123

Query: 138 LSIQSLLGEPNPESPLNSYAAALL-NNKEG 166
           LS+ SLL EPN  SP N  A+ +    KE 
Sbjct: 124 LSVISLLNEPNTFSPANVDASVMYRKWKES 153

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  179 bits (457), Expect = 2e-58
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 19/166 (11%)

Query: 16  AAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGG 74
            ++      SS         +  L+++L  L  +  + G SA    ++ ++ W   I G 
Sbjct: 2   GSSHHHHHHSSGLV---PRGSLLLRRQLAELNKNPVE-GFSAGLIDDNDLYRWEVLIIGP 57

Query: 75  KGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL----------- 123
             T+YEG  +K  L FP DYP +PP++KF T  +HPNVD+ G++C+ IL           
Sbjct: 58  PDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYE 117

Query: 124 --QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEG 166
             +++W   +   TI++S+ S+L +PN +SP N  AA     ++ G
Sbjct: 118 KPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNG 163

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  178 bits (454), Expect = 2e-58
 Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 4/135 (2%)

Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
           S  +R+ KE+ ++        ++     ES I    GT  G  GT YEG  + + +  P+
Sbjct: 1   SRAKRIMKEIQAVKDDPAA-HITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 59

Query: 93  DYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
           +YPFKPP+++F+T  +HPN+    G ICLDIL++ WS     ++ L+S+Q+LL  P P  
Sbjct: 60  EYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPND 119

Query: 152 PLNSYAAAL-LNNKE 165
           P ++  A   L ++E
Sbjct: 120 PQDAEVAQHYLRDRE 134

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score =  178 bits (454), Expect = 4e-58
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 7/141 (4%)

Query: 25  SSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSY 84
            S +        +R + + M L  S        +P  +++  +    +G +GT YE  ++
Sbjct: 3   GSMSGAGNLRSNRRREMDYMRLCNST----RKVYPS-DTVAEFWVEFKGPEGTPYEDGTW 57

Query: 85  KLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTIL-LSIQS 142
            L ++ P DYPFK P + F     HPNVD + G++CLD++   W+  Y    I  + +  
Sbjct: 58  MLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQ 117

Query: 143 LLGEPNPESPLNSYAAALLNN 163
           LL  PNP  PLN  AA LL+ 
Sbjct: 118 LLRYPNPSDPLNVQAAHLLHA 138

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  178 bits (454), Expect = 5e-58
 Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 13/156 (8%)

Query: 13  RATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIE 72
             ++    +  +SSP     +   +R+  +++ L+ S  +           +  ++    
Sbjct: 9   HHSSGLVPRGSMSSP-----SPGKRRMDTDVIKLIESKHE-VTIL----GGLNEFVVKFY 58

Query: 73  GGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAY 131
           G +GT YEG  +K+ +  P  YPFK P + F    FHPN+D   G +CLD++   W++ Y
Sbjct: 59  GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118

Query: 132 DCRTILLS-IQSLLGEPNPESPLNSYAAAL-LNNKE 165
           D   I  S +  LL  PNP  PLN  AAA+ L+  E
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPE 154

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  176 bits (449), Expect = 2e-57
 Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 10/154 (6%)

Query: 18  ASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGE----SIFTWIGTIEG 73
             S   V   +T        RL +EL       GD G  ++   +    ++  W G I G
Sbjct: 9   HHSSGLVPRGSTGVKVPRNFRLLEELEEGQKGVGD-GTVSWGLEDDEDMTLTRWTGMIIG 67

Query: 74  GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI----CLDILQDKWSS 129
              T+YE   Y L +     YP  PP V+F T      V+    +     + +L  KW +
Sbjct: 68  PPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQN 126

Query: 130 AYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 163
           +Y  + +L  ++ L+                 +N
Sbjct: 127 SYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN 160

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score =  176 bits (448), Expect = 3e-57
 Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 17/151 (11%)

Query: 32  TTSVTQRLQKELMSLMMS---GGDLGVSAFPEG--------ESIFTWIGTIEGGKGTMY- 79
                +R+ K+L  L+       +   S  P          ++I+ WI  ++    ++Y 
Sbjct: 6   KNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYG 65

Query: 80  -EGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILL 138
             G +Y+LS+ F  DYP +PP V+F T  + P V   G IC  ++ D W+       ++ 
Sbjct: 66  GAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIK 125

Query: 139 SIQSLL---GEPNPESPLNSYAAALL-NNKE 165
            +   +    +   +  +N  A   L    +
Sbjct: 126 LVLDRVFSQYKSRRDDDVNPEARHYLEKFPQ 156

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  175 bits (446), Expect = 5e-57
 Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 9/142 (6%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGES-----IFTWIGTIEGGKGTMYEGLSYKL 86
           ++   QRLQ+E           G  A P  ++     +  W   I G +GT + G  Y +
Sbjct: 2   SSLCLQRLQEERKKWRKDH-PFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60

Query: 87  SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLL 144
           ++ +P +YP KPP+VKF    +HPNV   G ICL IL +   W  A   + I+L +Q LL
Sbjct: 61  TVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 120

Query: 145 GEPNPESPLNSYAAAL-LNNKE 165
             PNP SP    A      NK 
Sbjct: 121 DSPNPNSPAQEPAWRSFSRNKA 142

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  175 bits (445), Expect = 7e-57
 Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 8/134 (5%)

Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGES---IFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
            RL  EL          GVS   E      +  W  TI G  GT++E   Y L++    +
Sbjct: 24  FRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDN 83

Query: 94  YPFKPPQVKFETMCFHPNVDQYGNIC---LDILQDKWSSAYDCRTILLSI-QSLLGEPNP 149
           YP  PP VKF+T      VD  G +    L IL++ W+  Y   TIL+S+ Q +L   N 
Sbjct: 84  YPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEMLSSANK 142

Query: 150 ESPLNSYAAALLNN 163
             P  +      NN
Sbjct: 143 RLPQPNEGEVYSNN 156

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  174 bits (444), Expect = 1e-56
 Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 16/148 (10%)

Query: 33  TSVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
            +  +RL  E   L ++  + G+ A P  E   F W   I G + T +E   +   L FP
Sbjct: 2   GTALKRLMAEYKQLTLNPPE-GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFP 60

Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTILL 138
           LDYP  PP+++F    FHPN+   G +C+ IL              ++WS       ILL
Sbjct: 61  LDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILL 120

Query: 139 SIQSLLGEPNPESPLNSYAAALL-NNKE 165
           S+ S+L EPN ES  N  A+ +  +++E
Sbjct: 121 SVVSMLAEPNDESGANVDASKMWRDDRE 148

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  174 bits (443), Expect = 1e-56
 Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 16/149 (10%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRF 90
           + +  +RL KEL  L+      G+ A P+ E+ IF W   I+G   T Y    +   L F
Sbjct: 2   SKTAQKRLLKELQQLIKDS-PPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 60

Query: 91  PLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTIL 137
           P DYP  PP++ F     HPN+   G +C+ IL             +++WS       IL
Sbjct: 61  PKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKIL 120

Query: 138 LSIQSLLGEPNPESPLNSYAAALL-NNKE 165
           LS+ S+L EPN ES  N  A  L  +N+ 
Sbjct: 121 LSVMSMLSEPNIESGANIDACILWRDNRP 149

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  176 bits (447), Expect = 2e-56
 Identities = 47/137 (34%), Positives = 77/137 (56%), Gaps = 4/137 (2%)

Query: 33  TSVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           +S  +R+ KE+ ++        ++     ES I    GT  G  GT YEG  + + +  P
Sbjct: 1   SSRAKRIMKEIQAVKDDPAA-HITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVP 59

Query: 92  LDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPE 150
           ++YPFKPP+++F+T  +HPN+    G ICLDIL++ WS     ++ L+S+Q+LL  P P 
Sbjct: 60  MEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPN 119

Query: 151 SPLNSYAAAL-LNNKEG 166
            P ++  A   L ++E 
Sbjct: 120 DPQDAEVAQHYLRDRES 136

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score =  172 bits (437), Expect = 1e-55
 Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
            R Q +   L+M+G            S   +     G  GT YEG  +K+ +  P DYPF
Sbjct: 5   TRKQCDFTKLIMAG----YDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPF 60

Query: 97  KPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTIL-LSIQSLLGEPNPESPLN 154
             P + F     HPNVD   G++CLD++   W+  Y    +  + +  LL  PNP  PLN
Sbjct: 61  ASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLN 120

Query: 155 SYAAALL-NNKEG 166
           S AA+LL  +K  
Sbjct: 121 SDAASLLMKDKNI 133

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  172 bits (437), Expect = 1e-55
 Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 12/161 (7%)

Query: 13  RATAAASSKQPVSSPNTVDTTSVTQ--RLQKELMSLMMSGGDLGVSAFP----EGESIFT 66
             +  +   +            V +  RL +EL       GD G  ++     E  ++  
Sbjct: 12  SQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGD-GTVSWGLEDDEDMTLTR 70

Query: 67  WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI----CLDI 122
           W G I G   T+YE   Y L +     YP  PP V+F T      V+    +     + +
Sbjct: 71  WTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISV 130

Query: 123 LQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 163
           L  KW ++Y  + +L  ++ L+                 +N
Sbjct: 131 LA-KWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN 170

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  170 bits (432), Expect = 3e-55
 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 14  ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPE--GESIFTWIGTI 71
            ++                 S+ +RLQKEL++L       G++   +    SI  WI  +
Sbjct: 2   GSSHHHHHHSSGLVPRGSMASMQKRLQKELLALQNDPPP-GMTLNEKSVQNSITQWIVDM 60

Query: 72  EGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET--MCFHPNVDQYGNICLDILQDKWSS 129
           EG  GT+YEG  ++L  +F   YPF  PQV F    +  HP+V   G+ICL IL + WS 
Sbjct: 61  EGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSP 120

Query: 130 AYDCRTILLSIQSLL 144
           A   +++ LSI S+L
Sbjct: 121 ALSVQSVCLSIISML 135

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  176 bits (448), Expect = 2e-54
 Identities = 54/128 (42%), Positives = 74/128 (57%), Gaps = 1/128 (0%)

Query: 36  TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYP 95
            +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYP
Sbjct: 5   LKRIHKELNDLARDPPA-QCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63

Query: 96  FKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNS 155
           FKPP+V F T  +HPN++  G+I LDIL+ +WS A     +LLSI SLL +PNP+ PL  
Sbjct: 64  FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123

Query: 156 YAAALLNN 163
             A +   
Sbjct: 124 EIARIYKT 131

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  167 bits (426), Expect = 4e-54
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRF 90
           +   + R+ KEL  L        +      ++ +  W   +       Y   ++ L + F
Sbjct: 2   SHMASMRVVKELEDLQKKPPP-YLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISF 59

Query: 91  PLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNP 149
           P +YPFKPP +KF T  +HPNVD+ G ICL I+  + W        +L ++  L+  PN 
Sbjct: 60  PPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNI 119

Query: 150 ESPLNSYAAALL-NNKE 165
             PL    A LL  N E
Sbjct: 120 REPLRMDLADLLTQNPE 136

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  162 bits (411), Expect = 1e-51
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 16/151 (10%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLG----------VSAFPEGES-IFTWIGTIEGGKGTMYE 80
             +   R+ KE   ++ +                S  P  E+ +  W   I G   T YE
Sbjct: 4   ADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYE 63

Query: 81  GLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVD-QYGNICLDILQ-DKWSSAYDCRTIL 137
              +++ +  P  YP  PP++ F +    H NV    G ICL+IL+ ++W+  +D    +
Sbjct: 64  NHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCV 123

Query: 138 LSIQSLLGEPNPESPLNSYAAALL--NNKEG 166
            ++  LL EP  +SPL+     ++   +   
Sbjct: 124 HAVWRLLREPVCDSPLDVDIGNIIRCGDMSA 154

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  159 bits (404), Expect = 9e-51
 Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 5/135 (3%)

Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
           + ++RL KEL  +   G           E+ + TW G I       Y+  ++++ + FP 
Sbjct: 2   AASRRLMKELEEIRKCGMK-NFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPA 59

Query: 93  DYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPES 151
           +YPFKPP++ F+T  +HPN+D+ G +CL ++  + W  A     ++ S+ +L+ +P PE 
Sbjct: 60  EYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEH 119

Query: 152 PLNSYAAAL-LNNKE 165
           PL +  A     +++
Sbjct: 120 PLRADLAEEYSKDRK 134

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  155 bits (395), Expect = 3e-49
 Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 9/151 (5%)

Query: 23  PVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGL 82
             +S +T   +   + L KE+  L  +             +               Y+G 
Sbjct: 3   ATASDSTRRVSVRDKLLVKEVAELEANLPC-TCKVHFPDPNKLHCFQLTVTPDEGYYQGG 61

Query: 83  SYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDK------WSSAYDCRTI 136
            ++     P  Y   PP+VK  T  +HPN+ + G ICL +L++       W+     + +
Sbjct: 62  KFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDV 121

Query: 137 LLSIQSLLGE-PNPESPLNSYAAALL-NNKE 165
           +  + SL  +  N + PLN  AA     +KE
Sbjct: 122 VWGLNSLFTDLLNFDDPLNIEAAEHHLRDKE 152

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score =  153 bits (388), Expect = 7e-48
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 25  SSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSY 84
           S+ +    T+ TQRL+++ + +        + A P   +I  W   + G + T YEG  Y
Sbjct: 5   STSSKRAPTTATQRLKQDYLRIKKDPVP-YICAEPLPSNILEWHYVVRGPEMTPYEGGYY 63

Query: 85  KLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTILLSIQSL 143
              L FP ++PFKPP +   T       + +      D   D W+ A+   TIL  + S 
Sbjct: 64  HGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSF 123

Query: 144 LGEPNPE--SPLNSYAAA 159
           + E  P   S   S    
Sbjct: 124 MVEKGPTLGSIETSDFTK 141

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score =  150 bits (379), Expect = 1e-46
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 16/163 (9%)

Query: 13  RATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSG--GDLGVSAFPEGESIFTWIGT 70
                +S   P  S     +   + RL KEL  +  S        S     +S++ W   
Sbjct: 6   HHHHHSSGLVPRGSGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVK 65

Query: 71  IEGG-KGTMYEG-----------LSYKLSLRFPLDYPFKPPQVKFETMCFHPN-VDQYGN 117
           ++     +                   L+  F  ++PF PP V+          V   G 
Sbjct: 66  LQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGA 125

Query: 118 ICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA 159
           +C+++L    WSSAY   ++++ I + L +        +    
Sbjct: 126 LCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQ 168

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score =  110 bits (275), Expect = 1e-29
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 18/160 (11%)

Query: 24  VSSPNTVDTTSVTQRLQKELMSLMMS---GGDLGVSAFPEGESIFTWIGTIEGGKGTMYE 80
           V + N  ++ +  +RL +E ++L  S        V    + E +      I G   T Y 
Sbjct: 66  VKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYA 125

Query: 81  GLSYKLSLRFPLDYPFKPPQVKFETMC-----FHPNVDQYGNICLDIL-------QDKWS 128
              ++  + FP DYP  PP V  ET       F+PN+   G +CL IL       ++KW+
Sbjct: 126 NGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWN 185

Query: 129 SAYDC-RTILLSIQSLLGEPNP--ESPLNSYAAALLNNKE 165
                   +L+S+QSL+    P    P    +    +  +
Sbjct: 186 PQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQ 225

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 7e-08
 Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 56/173 (32%)

Query: 8   TVENLRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLM---------MSG-G------ 51
             + L       +K  VS            +L++ L+ L          + G G      
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPY------LKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 52  ----DLGV-SAFPEGESIFTWIGTIEGGKGT------MYEGLSYKLSLRF--PLDYPFKP 98
                  V         IF W+  +     +      M + L Y++   +    D+    
Sbjct: 169 DVCLSYKVQCKMDFK--IF-WL-NL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 99  P------QVKFETMCFHPNVDQYGNICLDILQDKWSS----AYD--CRTILLS 139
                  Q +   +        Y N CL +L +  ++    A++  C+ +L +
Sbjct: 224 KLRIHSIQAELRRLLKSK---PYEN-CLLVLLNVQNAKAWNAFNLSCKILLTT 272

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 17/129 (13%)

Query: 37  QRLQKELMSLMMSGGDL--GVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRF--P 91
               +E ++++    DL   + ++  G   +    GTI       Y G +Y + +     
Sbjct: 23  DLTVRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTI----PVPYRGNTYNIPICLWLL 78

Query: 92  LDYPFKPPQVKF---ETM--CFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGE 146
             YP+ PP        +M      +VD  G I L  L +      D   ++  +  + G+
Sbjct: 79  DTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGD 138

Query: 147 PNPESPLNS 155
              E P+ S
Sbjct: 139 ---EPPVFS 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	100.0
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.94
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.8
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.77
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.55
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	96.38
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	95.3
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	95.07
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	94.62
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	94.16
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	93.89
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	93.01
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	88.13

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=6.1e-50  Score=304.09  Aligned_cols=147  Identities=39%  Similarity=0.690  Sum_probs=143.4

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116           32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN  111 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  111 (182)
                      +..+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         2 a~~a~~RL~kEl~~l~~-~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   80 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQ-DPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPN   80 (151)
T ss_dssp             CHHHHHHHHHHHHHHHH-SCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             chHHHHHHHHHHHHHHh-CCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccce
Confidence            45789999999999999 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       112 i~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      |+.+|+||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus        81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya  149 (151)
T 4gpr_A           81 INKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYA  149 (151)
T ss_dssp             BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999 999999999999874

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.5e-49  Score=304.05  Aligned_cols=148  Identities=34%  Similarity=0.532  Sum_probs=143.3

Q ss_pred             CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCC
Q 030116           31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP  110 (182)
Q Consensus        31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP  110 (182)
                      .+..+.+||++|+++|++ +++.||++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+||||
T Consensus        10 ~s~~~~~RL~kEl~~l~~-~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   88 (158)
T 1zdn_A           10 LPPHIIRLVYKEVTTLTA-DPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHP   88 (158)
T ss_dssp             SCHHHHHHHHHHHHHHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             cCHHHHHHHHHHHHHHHh-CCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccC
Confidence            445689999999999999 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          111 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       111 ni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      ||+.+|+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus        89 nv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A  158 (158)
T 1zdn_A           89 NVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  158 (158)
T ss_dssp             TBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999 999999999998873

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=3.5e-49  Score=304.09  Aligned_cols=145  Identities=40%  Similarity=0.684  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      .+.+||++|+++|++ +++.||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus        21 ~~~~RL~kEl~~l~~-~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~   99 (166)
T 2ayv_A           21 GALKRINKELNDLSK-DPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN   99 (166)
T ss_dssp             THHHHHHHHHHHHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHHh-CCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC
Confidence            488999999999999 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      .+|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus       100 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A  166 (166)
T 2ayv_A          100 SQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA  166 (166)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999 999999999998873

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=9.6e-50  Score=303.92  Aligned_cols=145  Identities=38%  Similarity=0.637  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      .+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus         5 ~~~~RL~kEl~~l~~-~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   83 (154)
T 2c2v_B            5 GLPRRIIKETQRLLA-EPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD   83 (154)
T ss_dssp             SCCHHHHHHHHHHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHh-CCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCc
Confidence            356999999999999 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      .+|+|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus        84 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a  150 (154)
T 2c2v_B           84 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA  150 (154)
T ss_dssp             TTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999 999999999998875

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=3.3e-49  Score=299.74  Aligned_cols=147  Identities=39%  Similarity=0.675  Sum_probs=142.4

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116           32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN  111 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  111 (182)
                      +..+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         2 s~~~~~RL~kEl~~l~~-~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   80 (150)
T 1z2u_A            2 SHMALKRIQKELQDLGR-DPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   80 (150)
T ss_dssp             CCHHHHHHHHHHHHHHH-SCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             chHHHHHHHHHHHHHHh-CCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCc
Confidence            34588999999999999 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       112 i~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      |+.+|+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus        81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a  149 (150)
T 1z2u_A           81 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA  149 (150)
T ss_dssp             BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999 999999999998874

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=3.8e-49  Score=301.19  Aligned_cols=145  Identities=54%  Similarity=1.001  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116           33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV  112 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni  112 (182)
                      ..+.+||++|+++|++ +++.||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         8 ~~~~~RL~kEl~~l~~-~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   86 (156)
T 2e2c_A            8 HSVSKRLQQELRTLLM-SGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV   86 (156)
T ss_dssp             CCHHHHHHHHHHHHHH-HCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             hHHHHHHHHHHHHHHh-CCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCC
Confidence            3588999999999999 789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       113 ~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      +.+|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +| ++|.++||+++++|.
T Consensus        87 ~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~  153 (156)
T 2e2c_A           87 DQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQ  153 (156)
T ss_dssp             CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             ccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999 78 999999999998875

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.1e-49  Score=307.57  Aligned_cols=146  Identities=57%  Similarity=0.959  Sum_probs=139.5

Q ss_pred             CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCC
Q 030116           31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP  110 (182)
Q Consensus        31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP  110 (182)
                      .+..+.+||++||++|++ +++.||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus        27 ~~~~~~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP  105 (179)
T 1i7k_A           27 ARGPVGKRLQQELMTLMM-SGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHP  105 (179)
T ss_dssp             ---CHHHHHHHHHHHHHH-HCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred             cChHHHHHHHHHHHHHHh-CCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccC
Confidence            456689999999999999 8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccc
Q 030116          111 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYY  178 (182)
Q Consensus       111 ni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~  178 (182)
                      ||+.+|+|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +| ++|.++|+++.+++
T Consensus       106 NV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~  173 (179)
T 1i7k_A          106 NVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQ  173 (179)
T ss_dssp             TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTT
T ss_pred             ccccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999 88 99999999998775

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=9e-49  Score=301.58  Aligned_cols=147  Identities=39%  Similarity=0.675  Sum_probs=142.7

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116           32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN  111 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  111 (182)
                      .+.+.+||++|+++|++ +++.||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus        17 ~~~~~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPn   95 (165)
T 2c4o_A           17 GSMALKRIHKELNDLAR-DPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   95 (165)
T ss_dssp             CHHHHHHHHHHHHHHHS-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTT
T ss_pred             CcHHHHHHHHHHHHHHh-CCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCc
Confidence            34689999999999999 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       112 i~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      |+.+|+||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus        96 V~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a  164 (165)
T 2c4o_A           96 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA  164 (165)
T ss_dssp             BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred             CCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999 999999999998874

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=6.1e-49  Score=303.55  Aligned_cols=145  Identities=39%  Similarity=0.655  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      .+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus         4 ~a~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~   82 (169)
T 1ayz_A            4 PARRRLMRDFKRMKE-DAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY   82 (169)
T ss_dssp             HHHHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHh-CCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCC
Confidence            588999999999999 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      .+|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|+++ ++|.++||+|+++|.
T Consensus        83 ~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a  149 (169)
T 1ayz_A           83 ANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW  149 (169)
T ss_dssp             TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999999999 999999999998874

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=1.2e-48  Score=300.60  Aligned_cols=144  Identities=33%  Similarity=0.570  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV  112 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni  112 (182)
                      .+.+||++|+++|++ +++.||++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus         3 ~a~~RL~kEl~~l~~-~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV   81 (164)
T 3h8k_A            3 TALKRLMAEYKQLTL-NPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI   81 (164)
T ss_dssp             HHHHHHHHHHHHHHH-SCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred             HHHHHHHHHHHHHHh-CCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence            689999999999999 8999999998865 99999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEeecCC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccc
Q 030116          113 DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYY  178 (182)
Q Consensus       113 ~~~G~icl~~l~-------------~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~  178 (182)
                      +.+|+||+++|.             ++|+|+++|++||.+|++||.+|++++|+|.+||++|++| ++|.++||++++++
T Consensus        82 ~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s  161 (164)
T 3h8k_A           82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS  161 (164)
T ss_dssp             CTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            999999999996             7899999999999999999999999999999999999999 99999999998876

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=1e-48  Score=297.62  Aligned_cols=145  Identities=40%  Similarity=0.652  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      .+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus         4 ~a~~RL~~E~~~l~~-~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   82 (152)
T 2aak_A            4 PARKRLMRDFKRLQQ-DPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIY   82 (152)
T ss_dssp             HHHHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHh-CCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCC
Confidence            588999999999999 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      .+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus        83 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a  149 (152)
T 2aak_A           83 ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSW  149 (152)
T ss_dssp             TTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999999999 999999999998874

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=3.9e-49  Score=299.03  Aligned_cols=143  Identities=42%  Similarity=0.695  Sum_probs=139.8

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCC
Q 030116           36 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY  115 (182)
Q Consensus        36 ~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~  115 (182)
                      .+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.+
T Consensus         3 ~~RL~kEl~~l~~-~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~   81 (149)
T 2r0j_A            3 PRRITKETQNLAN-EPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL   81 (149)
T ss_dssp             CHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred             HHHHHHHHHHHHh-CCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence            5899999999999 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          116 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       116 G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      |+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus        82 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a  146 (149)
T 2r0j_A           82 GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYA  146 (149)
T ss_dssp             CBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999 999999999998875

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.8e-48  Score=300.98  Aligned_cols=147  Identities=31%  Similarity=0.553  Sum_probs=142.8

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116           32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN  111 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  111 (182)
                      +..+.+||++|+++|++ +++.||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus         2 s~~~~~RL~kEl~~l~~-~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN   80 (169)
T 1yh2_A            2 SMQRASRLKRELHMLAT-EPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPN   80 (169)
T ss_dssp             CHHHHHHHHHHHHHHHH-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             chHHHHHHHHHHHHHHh-CCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCcccc
Confidence            45789999999999999 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEeecCC----CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          112 VDQYGNICLDILQ----DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       112 i~~~G~icl~~l~----~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      |+.+|.|||++|+    ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus        81 v~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a  153 (169)
T 1yh2_A           81 IDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA  153 (169)
T ss_dssp             BCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence            9999999999998    8999999999999999999999999999999999999999 999999999998875

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1.7e-48  Score=300.04  Aligned_cols=146  Identities=34%  Similarity=0.584  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEEEecC-CCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116           33 TSVTQRLQKELMSLMMSGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN  111 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  111 (182)
                      +.+.+||++|+++|++ +++.||++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         3 ~~a~~RL~kEl~~l~~-~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN   81 (165)
T 2ucz_A            3 KTAQKRLLKELQQLIK-DSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPN   81 (165)
T ss_dssp             HHHHHHHHHHHHHHHH-SCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTT
T ss_pred             hHHHHHHHHHHHHHHh-CCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCC
Confidence            4689999999999999 899999999875 79999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEeecC-------------CCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccc
Q 030116          112 VDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVY  177 (182)
Q Consensus       112 i~~~G~icl~~l-------------~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~  177 (182)
                      |+.+|+|||++|             .++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++
T Consensus        82 v~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~  161 (165)
T 2ucz_A           82 IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILK  161 (165)
T ss_dssp             BCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             CCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            999999999999             68999999999999999999999999999999999999999 9999999999987


Q ss_pred             cc
Q 030116          178 YH  179 (182)
Q Consensus       178 ~~  179 (182)
                      +.
T Consensus       162 ~~  163 (165)
T 2ucz_A          162 SL  163 (165)
T ss_dssp             HT
T ss_pred             Hh
Confidence            64

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1.4e-48  Score=307.39  Aligned_cols=146  Identities=38%  Similarity=0.641  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116           33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV  112 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni  112 (182)
                      ..+.+||++||++|++ +++.||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||
T Consensus        47 s~a~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV  125 (194)
T 3bzh_A           47 STSAKRIQKELADITL-DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNI  125 (194)
T ss_dssp             HHHHHHHHHHHHHHHH-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred             cHHHHHHHHHHHHHHh-CCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceE
Confidence            5588999999999999 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       113 ~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      +.+|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus       126 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya  193 (194)
T 3bzh_A          126 NSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA  193 (194)
T ss_dssp             CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999 999999999998874

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=6.1e-49  Score=297.97  Aligned_cols=144  Identities=32%  Similarity=0.587  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           35 VTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      +.+||++|+++|++ +++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus         2 ~~~RL~~El~~l~~-~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~   80 (149)
T 1fxt_A            2 RAKRIMKEIQAVKD-DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   80 (149)
T ss_dssp             CHHHHHHHHHHHHH-CGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHh-CCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCc
Confidence            56999999999999 8999999999877 999999999999999999999999999999999999999999999999999


Q ss_pred             C-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          114 Q-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       114 ~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      . +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus        81 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a  148 (149)
T 1fxt_A           81 SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA  148 (149)
T ss_dssp             SSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHC
T ss_pred             CCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            9 99999999999999999999999999999999999999999999999999 999999999998874

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=4.5e-49  Score=300.49  Aligned_cols=144  Identities=37%  Similarity=0.612  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeC
Q 030116           35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ  114 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~  114 (182)
                      +.+||++|+++|++ +++.||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus         6 ~~~RL~kE~~~l~~-~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   84 (155)
T 1jat_A            6 LPKRIIKETEKLVS-DPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR   84 (155)
T ss_dssp             CCHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHh-CCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC
Confidence            56999999999999 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          115 YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       115 ~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus        85 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a  150 (155)
T 1jat_A           85 LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA  150 (155)
T ss_dssp             TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999 999999999998874

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=2.6e-48  Score=298.47  Aligned_cols=148  Identities=32%  Similarity=0.533  Sum_probs=140.7

Q ss_pred             CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCC-----CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecc
Q 030116           31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGE-----SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET  105 (182)
Q Consensus        31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~-----~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t  105 (182)
                      .+..+.+||++|+++|++ ++++|+++.+.++     |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|
T Consensus         7 ~~~~~~~RL~kEl~~l~~-~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t   85 (163)
T 3rcz_B            7 HSSLCKTRLQEERKQWRR-DHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP   85 (163)
T ss_dssp             --CHHHHHHHHHHHHHHH-SCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CcHHHHHHHHHHHHHHHh-CCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence            455799999999999999 9999999999865     9999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeCCCcEEeecCCC--ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          106 MCFHPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       106 ~i~HPni~~~G~icl~~l~~--~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      +||||||+.+|+||+++|..  +|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus        86 ~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya  162 (163)
T 3rcz_B           86 PLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA  162 (163)
T ss_dssp             CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            99999999999999999975  599999999999999999999999999999999999999 999999999999874

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=9.2e-48  Score=294.38  Aligned_cols=147  Identities=33%  Similarity=0.595  Sum_probs=141.0

Q ss_pred             cHHHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116           32 TTSVTQRLQKELMSLMMSG---GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF  108 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~---~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  108 (182)
                      +..+.+||++|+++|++ +   ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus         6 s~~a~~RL~kEl~~l~~-~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   84 (159)
T 2bep_A            6 ANIAVQRIKREFKEVLK-SEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   84 (159)
T ss_dssp             CHHHHHHHHHHHHHHHH-CHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             hHHHHHHHHHHHHHHHh-cCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence            34689999999999998 4   5789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeC-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          109 HPNVDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       109 HPni~~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      ||||+. +|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus        85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a  157 (159)
T 2bep_A           85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA  157 (159)
T ss_dssp             BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             ccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            999996 99999999999999999999999999999999999999999999999999 999999999998874

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=7.6e-48  Score=302.86  Aligned_cols=147  Identities=39%  Similarity=0.640  Sum_probs=138.0

Q ss_pred             cHHHHHHHHHHHHHHHhhCCC-------------CCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCC
Q 030116           32 TTSVTQRLQKELMSLMMSGGD-------------LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKP   98 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~~~-------------~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~p   98 (182)
                      ...+.+||++|+++|++ +++             .||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++|
T Consensus        30 ~~~a~~RL~kEl~~l~k-~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~P  108 (193)
T 2f4z_A           30 TPREQARLLKELADIQQ-LQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP  108 (193)
T ss_dssp             --CHHHHHHHHHHHHHH-C----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred             CCHHHHHHHHHHHHHHh-CCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCC
Confidence            34588999999999999 665             7999999999999999999999999999999999999999999999


Q ss_pred             CcceeccccCCCceeC-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccc
Q 030116           99 PQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPV  176 (182)
Q Consensus        99 P~v~f~t~i~HPni~~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~  176 (182)
                      |+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|++
T Consensus       109 P~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~  188 (193)
T 2f4z_A          109 PKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTE  188 (193)
T ss_dssp             CEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999999995 99999999999999999999999999999999999999999999999999 999999999998


Q ss_pred             ccc
Q 030116          177 YYH  179 (182)
Q Consensus       177 ~~~  179 (182)
                      +|.
T Consensus       189 ~ya  191 (193)
T 2f4z_A          189 TFA  191 (193)
T ss_dssp             HHC
T ss_pred             HHc
Confidence            874

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=8.5e-48  Score=307.21  Aligned_cols=147  Identities=36%  Similarity=0.677  Sum_probs=142.2

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116           32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN  111 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  111 (182)
                      .+.+.+||++|+++|++ +++.||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus        21 ~s~a~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPN   99 (216)
T 2pwq_A           21 GSKELLRLQKELKDIEN-ENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPN   99 (216)
T ss_dssp             SCHHHHHHHHHHHHHHH-SCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             cCHHHHHHHHHHHHHHh-CCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCC
Confidence            44689999999999999 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeC-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          112 VDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       112 i~~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      |+. +|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus       100 I~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya  169 (216)
T 2pwq_A          100 ISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFA  169 (216)
T ss_dssp             BCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            995 99999999999999999999999999999999999999999999999999 999999999998875

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=1.7e-47  Score=292.38  Aligned_cols=145  Identities=34%  Similarity=0.566  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecC-----CCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF  108 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  108 (182)
                      .+.+||++|+++|++ +++.|+++.+.+     +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus         4 ~a~~RL~kE~~~l~~-~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   82 (157)
T 2gjd_A            4 LCLQRLQEERKKWRK-DHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY   82 (157)
T ss_dssp             HHHHHHHHHHHHHHH-CCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCC
T ss_pred             HHHHHHHHHHHHHHh-CCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCc
Confidence            588999999999999 899999998874     48999999999999999999999999999999999999999999999


Q ss_pred             CCceeCCCcEEeecCCC--ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          109 HPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       109 HPni~~~G~icl~~l~~--~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      ||||+.+|.||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus        83 HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a  156 (157)
T 2gjd_A           83 HPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS  156 (157)
T ss_dssp             CTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTB
T ss_pred             cCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            99999999999999976  799999999999999999999999999999999999999 999999999998874

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=3.9e-47  Score=291.46  Aligned_cols=147  Identities=34%  Similarity=0.555  Sum_probs=140.1

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCCeEEEecC-----CCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccc
Q 030116           32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM  106 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~  106 (182)
                      +..+.+||++|+++|++ +++.|+.+.+..     +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus         5 ~~~a~~RL~kE~~~l~~-~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   83 (161)
T 2grr_A            5 SGIALSRLAQERKAWRK-DHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP   83 (161)
T ss_dssp             CHHHHHHHHHHHHHHHH-SCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             cHHHHHHHHHHHHHHHh-CCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence            34689999999999999 899999998763     689999999999999999999999999999999999999999999


Q ss_pred             cCCCceeCCCcEEeecCCC--ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          107 CFHPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       107 i~HPni~~~G~icl~~l~~--~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      ||||||+.+|.||+++|..  +|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus        84 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a  159 (161)
T 2grr_A           84 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA  159 (161)
T ss_dssp             CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred             cccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            9999999999999999975  899999999999999999999999999999999999999 999999999998874

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=4.2e-47  Score=296.74  Aligned_cols=148  Identities=33%  Similarity=0.589  Sum_probs=138.9

Q ss_pred             CCcHHHHHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116           30 VDTTSVTQRLQKELMSLMMSGGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF  108 (182)
Q Consensus        30 ~~~~~~~~RL~~El~~l~~~~~~~g~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  108 (182)
                      +.+..+.|||++||++|++ +++.||++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus         3 m~~~~a~kRL~kEl~~l~~-~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   81 (183)
T 3rz3_A            3 MGSPSSQKALLLELKGLQE-EPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMW   81 (183)
T ss_dssp             --CCHHHHHHHHHHHHHHH-SCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             CcchHHHHHHHHHHHHHHh-CCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCc
Confidence            3445789999999999999 899999998 56789999999999999999999999999999999999999999999999


Q ss_pred             CCceeCCCcEEeecCC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhc------h-HHHH
Q 030116          109 HPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN------K-EGCI  168 (182)
Q Consensus       109 HPni~~~G~icl~~l~-------------~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~------~-~~f~  168 (182)
                      ||||+.+|+||+++|.             ++|+|+++|++||.+|++||.+||+++|+|.||+++|++      + ++|.
T Consensus        82 HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~  161 (183)
T 3rz3_A           82 HPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYT  161 (183)
T ss_dssp             CTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHH
T ss_pred             cCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHH
Confidence            9999999999999996             789999999999999999999999999999999999998      7 8999


Q ss_pred             HHHhhccccc
Q 030116          169 HMFSLSPVYY  178 (182)
Q Consensus       169 ~~a~~~~~~~  178 (182)
                      ++||+++.++
T Consensus       162 ~~v~~~v~~s  171 (183)
T 3rz3_A          162 DIIRKQVLGT  171 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988765

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=3.1e-47  Score=290.29  Aligned_cols=144  Identities=28%  Similarity=0.498  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEE-EecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSA-FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV  112 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~-~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni  112 (182)
                      .+.+||++|+++|++ +++.|+.+ .+.++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         4 ~~~~RL~kEl~~l~~-~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV   81 (155)
T 1wzv_A            4 MASMRVVKELEDLQK-KPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV   81 (155)
T ss_dssp             -CHHHHHHHHHHHHH-SCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             hHHHHHHHHHHHHHh-CCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcC
Confidence            478999999999999 88999999 778899999999999 999999999999999999999999999999999999999


Q ss_pred             eCCCcEEeecC-CCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          113 DQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       113 ~~~G~icl~~l-~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      +.+|.||+++| .++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus        82 ~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a  150 (155)
T 1wzv_A           82 DENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFG  150 (155)
T ss_dssp             CTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999 89999999999999999999999999999999999999999 999999999998874

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=3.4e-47  Score=301.28  Aligned_cols=145  Identities=34%  Similarity=0.601  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCC
Q 030116           34 SVTQRLQKELMSLMMSG---GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP  110 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~---~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP  110 (182)
                      .+.+||++|+++|++ +   ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus         5 ~a~~Rl~kEl~~l~~-~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   83 (201)
T 3k9o_A            5 IAVQRIKREFKEVLK-SEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHP   83 (201)
T ss_dssp             TTHHHHHHHHHHHHT-CHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBT
T ss_pred             HHHHHHHHHHHHHHh-CCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccC
Confidence            478999999999998 5   368999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeC-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          111 NVDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       111 ni~~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      ||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus        84 nv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a  154 (201)
T 3k9o_A           84 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA  154 (201)
T ss_dssp             TBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             CCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            9996 99999999999999999999999999999999999999999999999999 999999999998874

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=3.7e-47  Score=294.37  Aligned_cols=143  Identities=33%  Similarity=0.557  Sum_probs=111.0

Q ss_pred             CcHHHHHHHHHHHHHHHhhCCCCCeEEEecC-CCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCC
Q 030116           31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH  109 (182)
Q Consensus        31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H  109 (182)
                      +++.+.+||++|+++|++ +++.||++.+.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus        14 ~~~~~~~rL~kEl~~l~~-~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~H   92 (172)
T 2awf_A           14 LVPRGSLLLRRQLAELNK-NPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWH   92 (172)
T ss_dssp             CCCTTHHHHHHHHHHHHH-SCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCC
T ss_pred             ChHHHHHHHHHHHHHHHh-CCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCcc
Confidence            445689999999999999 899999999875 799999999999999999999999999999999999999999999999


Q ss_pred             CceeCCCcEEeecCC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-H-HHHHHHhhc
Q 030116          110 PNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-E-GCIHMFSLS  174 (182)
Q Consensus       110 Pni~~~G~icl~~l~-------------~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~-~f~~~a~~~  174 (182)
                      |||+.+|+||+++|.             ++|+|+++|++||.+|++||.+|++++|+|.+||++|++| + +|.++||++
T Consensus        93 PNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~  172 (172)
T 2awf_A           93 PNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC  172 (172)
T ss_dssp             TTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred             CCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence            999999999999996             6899999999999999999999999999999999999999 9 999999874

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=6.1e-47  Score=291.95  Aligned_cols=148  Identities=22%  Similarity=0.333  Sum_probs=139.6

Q ss_pred             CCcHHHHHHHHHHHHHHHhhCCCCCeEEEec-CCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116           30 VDTTSVTQRLQKELMSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF  108 (182)
Q Consensus        30 ~~~~~~~~RL~~El~~l~~~~~~~g~~~~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  108 (182)
                      ...+.+.+||++|+++|++ +++.||++.+. ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus        10 ~~~s~~~~RL~kEl~~l~~-~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~   87 (167)
T 3fn1_B           10 RRVSVRDKLLVKEVAELEA-NLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIW   87 (167)
T ss_dssp             CCCCHHHHHHHHHHHHHGG-GSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCC
T ss_pred             cchhHHHHHHHHHHHHHHh-CCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcc
Confidence            3455799999999999999 89999999865 67899999998 899999999999999999999999999999999999


Q ss_pred             CCceeCCCcEEeecCCC------ccCCCCCHHHHHHHHHHhhcC-CCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          109 HPNVDQYGNICLDILQD------KWSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       109 HPni~~~G~icl~~l~~------~W~p~~~i~~vL~~i~~ll~~-p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      ||||+.+|+||+++|..      +|+|+++|.+||.+|++||.+ |++++|+|.|||++|++| ++|.++||+++++|.
T Consensus        88 HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A  166 (167)
T 3fn1_B           88 HPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA  166 (167)
T ss_dssp             CSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            99999999999999975      799999999999999999999 799999999999999999 999999999998874

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=9.5e-47  Score=291.22  Aligned_cols=141  Identities=32%  Similarity=0.585  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce-
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV-  112 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni-  112 (182)
                      .+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||| 
T Consensus        23 ~a~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~  101 (169)
T 1yrv_A           23 RAYLLLHRDFCDLKE-NNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD  101 (169)
T ss_dssp             HHHHHHHHHHHHHHH-HCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHh-CCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCccc
Confidence            589999999999999 899999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             eCCCcEEeecCC--CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccc
Q 030116          113 DQYGNICLDILQ--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPV  176 (182)
Q Consensus       113 ~~~G~icl~~l~--~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~  176 (182)
                      +.+|+||+++|.  ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++ +++..
T Consensus       102 ~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~  167 (169)
T 1yrv_A          102 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFN  167 (169)
T ss_dssp             TTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC
T ss_pred             CCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhh
Confidence            679999999998  8999999999999999999999999999999999999999 999988 76644

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=2.2e-46  Score=305.16  Aligned_cols=147  Identities=33%  Similarity=0.595  Sum_probs=141.5

Q ss_pred             cHHHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116           32 TTSVTQRLQKELMSLMMSG---GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF  108 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~---~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  108 (182)
                      +..+.+||++||++|++ +   ++.||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus        55 s~~a~~RL~kEl~~l~~-~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~  133 (253)
T 3e46_A           55 ANIAVQRIKREFKEVLK-SEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW  133 (253)
T ss_dssp             CHHHHHHHHHHHHHHHH-CHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             cHHHHHHHHHHHHHHHh-CCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence            46799999999999998 5   4789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeC-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          109 HPNVDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       109 HPni~~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      ||||+. +|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus       134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA  206 (253)
T 3e46_A          134 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA  206 (253)
T ss_dssp             BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             cCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            999996 99999999999999999999999999999999999999999999999999 999999999998874

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6.7e-46  Score=284.30  Aligned_cols=143  Identities=30%  Similarity=0.495  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116           33 TSVTQRLQKELMSLMMSGGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN  111 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  111 (182)
                      +.+.+||++|+++|   ++++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         5 ~~~~~RL~kEl~~l---~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   80 (160)
T 1y8x_A            5 SAAQLRIQKDINEL---NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN   80 (160)
T ss_dssp             CHHHHHHHHHHHTC---CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             cHHHHHHHHHHHhc---CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCc
Confidence            46899999999999   367899998 7789999999998 999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       112 i~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      |+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||++.+...
T Consensus        81 v~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~~  149 (160)
T 1y8x_A           81 IDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY  149 (160)
T ss_dssp             BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEE
T ss_pred             CCCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCc
Confidence            99999999999999999999999999999999999999999999999999999 999999999876543

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.8e-46  Score=288.74  Aligned_cols=147  Identities=29%  Similarity=0.459  Sum_probs=138.2

Q ss_pred             CCCcHHHHHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecccc
Q 030116           29 TVDTTSVTQRLQKELMSLMMSGGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC  107 (182)
Q Consensus        29 ~~~~~~~~~RL~~El~~l~~~~~~~g~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i  107 (182)
                      ...++.+.+||++|+++|   ++++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus        21 ~~~~~~~~~RL~kEl~~l---~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i   96 (180)
T 2nvu_C           21 SKKASAAQLRIQKDINEL---NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV   96 (180)
T ss_dssp             CCSCCHHHHHHHHHHHTC---CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCC
T ss_pred             cCCccHHHHHHHHHHHhc---CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccC
Confidence            344567899999999999   367899998 7789999999998 99999999999999999999999999999999999


Q ss_pred             CCCceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          108 FHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       108 ~HPni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      |||||+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||++.+...
T Consensus        97 ~HPNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~~  169 (180)
T 2nvu_C           97 YHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY  169 (180)
T ss_dssp             CBTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSEE
T ss_pred             ccCCCCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999999999999999999999 999999999977654

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=1.6e-45  Score=285.21  Aligned_cols=148  Identities=24%  Similarity=0.450  Sum_probs=137.0

Q ss_pred             cHHHHHHHHHHHHHHHhhC-C------CC---CeEEEe-cCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCc
Q 030116           32 TTSVTQRLQKELMSLMMSG-G------DL---GVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQ  100 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~-~------~~---g~~~~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~  100 (182)
                      +..+.+||++|+++|+++. +      +.   ++.+.+ .++|+++|+++|.||++|||+||.|+|+|.||++||++||+
T Consensus         4 s~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~   83 (172)
T 2y9m_A            4 ADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPK   83 (172)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred             cHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCE
Confidence            3568999999999999832 2      33   466778 68899999999999999999999999999999999999999


Q ss_pred             ceecc-ccCCCcee-CCCcEEeecCC-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhc-h-HHHHHHHhhcc
Q 030116          101 VKFET-MCFHPNVD-QYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN-K-EGCIHMFSLSP  175 (182)
Q Consensus       101 v~f~t-~i~HPni~-~~G~icl~~l~-~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~-~-~~f~~~a~~~~  175 (182)
                      |+|.| +||||||+ .+|+|||++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++ | ++|.++||+++
T Consensus        84 v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~  163 (172)
T 2y9m_A           84 ISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFL  163 (172)
T ss_dssp             EEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             EEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999 99999997 69999999998 899999999999999999999999999999999999999 8 99999999998


Q ss_pred             cccc
Q 030116          176 VYYH  179 (182)
Q Consensus       176 ~~~~  179 (182)
                      +++.
T Consensus       164 ~~~~  167 (172)
T 2y9m_A          164 AERE  167 (172)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=6.5e-47  Score=301.92  Aligned_cols=144  Identities=32%  Similarity=0.587  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           35 VTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      +.+||++|+++|++ ++++||++.+.++ ++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus         3 a~~RL~kEl~~l~~-~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~   81 (215)
T 1tte_A            3 RAKRIMKEIQAVKD-DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   81 (215)
T ss_dssp             THHHHHHHHHHHHT-TTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred             HHHHHHHHHHHHHh-CCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence            67999999999999 8999999999876 567999999999999999999999999999999999999999999999999


Q ss_pred             C-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          114 Q-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       114 ~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      . +|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||.|+++|.
T Consensus        82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA  149 (215)
T 1tte_A           82 SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA  149 (215)
T ss_dssp             SSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            9 99999999999999999999999999999999999999999999999999 999999999998875

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=1.2e-46  Score=286.28  Aligned_cols=141  Identities=32%  Similarity=0.534  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeC
Q 030116           35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ  114 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~  114 (182)
                      +.+||++|+++|++ .   |+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus         3 a~~Rl~kEl~~l~~-~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~   78 (152)
T 2onu_A            3 SLTRKQCDFTKLIM-A---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE   78 (152)
T ss_dssp             CCCHHHHTHHHHHH-H---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred             HHHHHHHHHHhcCc-C---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence            56899999999988 3   7888888999999999999999999999999999999999999999999999999999996


Q ss_pred             -CCcEEeecCCCccCCCCCHHHHHHH-HHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          115 -YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       115 -~G~icl~~l~~~W~p~~~i~~vL~~-i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                       +|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus        79 ~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a  146 (152)
T 2onu_A           79 ASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYA  146 (152)
T ss_dssp             TTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             cCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence             9999999999999999999999999 6899999999999999999999999 999999999998874

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=5.5e-46  Score=283.14  Aligned_cols=144  Identities=27%  Similarity=0.594  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEe-cCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV  112 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni  112 (182)
                      .+.+||++|+++|++ +++.|+.+.+ .++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus         2 ~a~~RL~kEl~~l~~-~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   79 (154)
T 1c4z_D            2 AASRRLMKELEEIRK-CGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNI   79 (154)
T ss_dssp             --CTTHHHHHTTCSS-SCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             cHHHHHHHHHHHHHh-CCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccC
Confidence            356899999999999 8889998655 5789999999998 999999999999999999999999999999999999999


Q ss_pred             eCCCcEEeecCC-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          113 DQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       113 ~~~G~icl~~l~-~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      +.+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus        80 ~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a  148 (154)
T 1c4z_D           80 DEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG  148 (154)
T ss_dssp             CTTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC-
T ss_pred             CCCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence            999999999996 8999999999999999999999999999999999999999 999999999998874

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.7e-46  Score=288.54  Aligned_cols=141  Identities=30%  Similarity=0.561  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      .+.+||++|+++|++    .|+++.+. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus        25 ~a~~RL~kEl~~l~~----~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~   99 (179)
T 2z5d_A           25 PGKRRMDTDVIKLIE----SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID   99 (179)
T ss_dssp             HHHHHHHHHHHHHHH----SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHhcCc----CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCC
Confidence            589999999999986    37888876 6789999999999999999999999999999999999999999999999999


Q ss_pred             C-CCcEEeecCCCccCCCCCHHHHHHH-HHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          114 Q-YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       114 ~-~G~icl~~l~~~W~p~~~i~~vL~~-i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      . +|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus       100 ~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a  168 (179)
T 2z5d_A          100 EASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA  168 (179)
T ss_dssp             TTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence            9 9999999999999999999999999 9999999999999999999999999 999999999998874

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=1.4e-44  Score=283.81  Aligned_cols=147  Identities=31%  Similarity=0.442  Sum_probs=138.4

Q ss_pred             CCcHHHHHHHHHHHHHHHhhCCCCCeEEE----ecCCCCc---eEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcce
Q 030116           30 VDTTSVTQRLQKELMSLMMSGGDLGVSAF----PEGESIF---TWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVK  102 (182)
Q Consensus        30 ~~~~~~~~RL~~El~~l~~~~~~~g~~~~----~~~~~~~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~  102 (182)
                      ...+.+.+||++||++|+   .++|+++.    +.++|++   +|+++|. |++|||+||.|+++|.||++||++||+|+
T Consensus        25 ~~~s~a~~RL~kEl~~l~---~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~  100 (190)
T 3o2u_A           25 PNLSAARIRLKRDLDSLD---LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVV  100 (190)
T ss_dssp             CCCCHHHHHHHHHHHTCC---CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEE
T ss_pred             CCccHHHHHHHHHHHhcc---CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeE
Confidence            344578999999999996   56899987    7889999   9999997 88899999999999999999999999999


Q ss_pred             eccccCCCceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccccc
Q 030116          103 FETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYHF  180 (182)
Q Consensus       103 f~t~i~HPni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~~  180 (182)
                      |.|+||||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|++.+..
T Consensus       101 f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~~~  179 (190)
T 3o2u_A          101 CLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSI  179 (190)
T ss_dssp             ECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTCEE
T ss_pred             EecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999 9999999999887653

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=4e-44  Score=309.35  Aligned_cols=146  Identities=38%  Similarity=0.654  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116           33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV  112 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni  112 (182)
                      +.+.|||++|+++|++ ++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus         2 s~a~~RL~kEl~~l~~-~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   80 (399)
T 4ddg_A            2 AMALKRIHKELNDLAR-DPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI   80 (399)
T ss_dssp             HHHHHHHHHHHHHHHH-SCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTB
T ss_pred             cHHHHHHHHHHHHHHh-CCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecccccccc
Confidence            4689999999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       113 ~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      +.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus        81 ~~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a  148 (399)
T 4ddg_A           81 NSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA  148 (399)
T ss_dssp             CTTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred             CCCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999 999999999998874

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-44  Score=280.20  Aligned_cols=141  Identities=30%  Similarity=0.545  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      .+.+||++|+++|++ ++. ++   +.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus        12 ~~~~RL~~El~~l~~-~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~   86 (171)
T 1yf9_A           12 RSNRRREMDYMRLCN-STR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVD   86 (171)
T ss_dssp             -CCHHHHHHHHHHHS-SSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHh-CCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCc
Confidence            467999999999998 553 43   3578999999999999999999999999999999999999999999999999999


Q ss_pred             C-CCcEEeecCCCccCCCCCHHHHHHHH-HHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          114 Q-YGNICLDILQDKWSSAYDCRTILLSI-QSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       114 ~-~G~icl~~l~~~W~p~~~i~~vL~~i-~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      . +|.||+++|.++|+|+++|.+||.+| ++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus        87 ~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a  155 (171)
T 1yf9_A           87 ERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHA  155 (171)
T ss_dssp             TTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence            6 99999999999999999999999997 799999999999999999999999 999999999998874

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=1.5e-43  Score=273.04  Aligned_cols=139  Identities=22%  Similarity=0.431  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHhhCC------------CCCeEEEecCCCCceEEEEEEcCCCCCCC--CCEEEEEEEeCCCCCCCCC
Q 030116           34 SVTQRLQKELMSLMMSGG------------DLGVSAFPEGESIFTWIGTIEGGKGTMYE--GLSYKLSLRFPLDYPFKPP   99 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~------------~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp~~YP~~pP   99 (182)
                      .+.|||++|+++|++ ++            ..|+.+.+.++|+++|+++|.||++|||+  ||.|+++|.||++||++||
T Consensus         8 ~a~kRL~kEl~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP   86 (167)
T 4ds2_A            8 ISNKRIIKDLKLLLE-EVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPP   86 (167)
T ss_dssp             CCCHHHHHHHHHHHH-HHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCC
T ss_pred             HHHHHHHHHHHHHHh-CcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCC
Confidence            467999999999998 55            67899999999999999999999999999  9999999999999999999


Q ss_pred             cceeccccCCCceeCCCcEEeecCCCccCCCCCHHHHHH-HHHHhhcC--CCCCCcccHHHHHHhhch-HHHHHHHhh
Q 030116          100 QVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILL-SIQSLLGE--PNPESPLNSYAAALLNNK-EGCIHMFSL  173 (182)
Q Consensus       100 ~v~f~t~i~HPni~~~G~icl~~l~~~W~p~~~i~~vL~-~i~~ll~~--p~~~~p~N~~a~~~~~~~-~~f~~~a~~  173 (182)
                      +|+|.|+||||||+.+|.||+++|.++|+|++++.++|. .|++|+.+  |++++|+|.|||++|++| ++|.++||+
T Consensus        87 ~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vrr  164 (167)
T 4ds2_A           87 TVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRR  164 (167)
T ss_dssp             EEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHTT
T ss_pred             EEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHhh
Confidence            999999999999999999999999999999999999754 67778874  899999999999999999 999999985

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=3.4e-42  Score=262.57  Aligned_cols=130  Identities=30%  Similarity=0.429  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHHhhC-CCCCeEEEecC-C--CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116           33 TSVTQRLQKELMSLMMSG-GDLGVSAFPEG-E--SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF  108 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~-~~~g~~~~~~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  108 (182)
                      ..+.+||++|+++|++ + ++.|+++.+.+ +  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus        20 ~~~~~RL~kEl~~l~~-~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~   98 (156)
T 2q0v_A           20 VPRSFRLLDELERGQK-GNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIE   98 (156)
T ss_dssp             CCHHHHHHHHHHHHHC-C-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             chHHHHHHHHHHHHHh-CCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccc
Confidence            4578999999999999 6 78899998853 3  5999999999999999999999999999999999999999999999


Q ss_pred             CCceeCCCcE---EeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch
Q 030116          109 HPNVDQYGNI---CLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK  164 (182)
Q Consensus       109 HPni~~~G~i---cl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~  164 (182)
                      ||||+.+|+|   ||++|+ +|+|+++|++||.+|++||.+|++++|+|.+||.+|.+|
T Consensus        99 HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n  156 (156)
T 2q0v_A           99 MSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN  156 (156)
T ss_dssp             CTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred             cCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence            9999999999   899997 599999999999999999999999999999999999875

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=1.9e-41  Score=249.87  Aligned_cols=119  Identities=31%  Similarity=0.513  Sum_probs=106.2

Q ss_pred             CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecccc-CC
Q 030116           31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FH  109 (182)
Q Consensus        31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~H  109 (182)
                      +.+.+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||
T Consensus         3 ~m~~a~~RL~kEl~~l~~-~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H   81 (125)
T 2fo3_A            3 NMGNANYRIQKELHNFLN-NPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKH   81 (125)
T ss_dssp             ------CHHHHHHHHHHH-SCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCB
T ss_pred             CchHHHHHHHHHHHHHHh-CCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCC
Confidence            345678999999999999 8899999999999999999999999999999999999999999999999999999996 99


Q ss_pred             CceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCC
Q 030116          110 PNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPE  150 (182)
Q Consensus       110 Pni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~  150 (182)
                      |||+.+|+||+++|+++|+|+++|++||.+|++||.+|+.+
T Consensus        82 Pnv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~  122 (125)
T 2fo3_A           82 THVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEK  122 (125)
T ss_dssp             TTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-----
T ss_pred             CcCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccc
Confidence            99999999999999999999999999999999999999875

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.4e-40  Score=248.53  Aligned_cols=118  Identities=30%  Similarity=0.504  Sum_probs=112.7

Q ss_pred             CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecccc-CC
Q 030116           31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FH  109 (182)
Q Consensus        31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~H  109 (182)
                      +...+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||
T Consensus        17 ~~~~~~~RL~kEl~~l~~-~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H   95 (136)
T 2h2y_A           17 NLGNANYRIQKELNNFLK-NPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKH   95 (136)
T ss_dssp             CTTSHHHHHHHHHHHHHH-SCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCC
T ss_pred             cchHHHHHHHHHHHHHHh-CCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCC
Confidence            333588999999999999 8999999999999999999999999999999999999999999999999999999996 99


Q ss_pred             CceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCC
Q 030116          110 PNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNP  149 (182)
Q Consensus       110 Pni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~  149 (182)
                      |||+.+|+||+++|+++|+|+++|.+||.+|++||.+|+.
T Consensus        96 Pnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           96 THVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             TTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             CcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence            9999999999999999999999999999999999999975

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=1e-40  Score=255.12  Aligned_cols=125  Identities=28%  Similarity=0.389  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCC-eEEEec-CCC--CceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116           33 TSVTQRLQKELMSLMMSGGDLG-VSAFPE-GES--IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF  108 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g-~~~~~~-~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  108 (182)
                      ..+.+||++|+++|++ ++++| +++.+. ++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus        24 ~p~~~RL~kEl~~l~~-~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~  102 (160)
T 2a4d_A           24 VPRNFRLLEELEEGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN  102 (160)
T ss_dssp             HHHHHHHHHHHHHHHS-CCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             chHHHHHHHHHHHHHh-CCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCce
Confidence            6689999999999999 78788 778774 454  899999999999999999999999999999999999999999999


Q ss_pred             CCcee-CCCcEEeecCC--CccCCCCCHHHHHHHHHHhhc-CCCCCCcccHHHH
Q 030116          109 HPNVD-QYGNICLDILQ--DKWSSAYDCRTILLSIQSLLG-EPNPESPLNSYAA  158 (182)
Q Consensus       109 HPni~-~~G~icl~~l~--~~W~p~~~i~~vL~~i~~ll~-~p~~~~p~N~~a~  158 (182)
                      ||||+ .+|+||+++|.  ++|+|+++|++||.+|++||. +||.++|+|.|||
T Consensus       103 HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  156 (160)
T 2a4d_A          103 MNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  156 (160)
T ss_dssp             CTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred             eCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence            99999 59999999997  899999999999999999995 7999999999987

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=1.2e-41  Score=254.78  Aligned_cols=127  Identities=26%  Similarity=0.383  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHhhC-CCCCeEEEecC-C--CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116           33 TSVTQRLQKELMSLMMSG-GDLGVSAFPEG-E--SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF  108 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~-~~~g~~~~~~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  108 (182)
                      ..+.+||++|+++|++ + ++.|+++.+.+ +  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus         5 ~~~~~RL~kEl~~l~~-~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   83 (138)
T 1jat_B            5 VPRNFRLLEELEKGEK-GFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN   83 (138)
T ss_dssp             CCHHHHHHHHHHHHHC-----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             HHHHHHHHHHHHHHHh-cCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccc
Confidence            3577999999999998 6 78899998853 3  4899999999999999999999999999999999999999999999


Q ss_pred             CCceeCC-CcE--EeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHh
Q 030116          109 HPNVDQY-GNI--CLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL  161 (182)
Q Consensus       109 HPni~~~-G~i--cl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~  161 (182)
                      ||||+.+ |.|  ||++++ +|+|+++|++||.+|++||.+|++++|+|.+|+.+|
T Consensus        84 HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y  138 (138)
T 1jat_B           84 LPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF  138 (138)
T ss_dssp             CTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             cCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence            9999995 999  999986 899999999999999999999999999999998765

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=2.8e-40  Score=276.39  Aligned_cols=150  Identities=27%  Similarity=0.397  Sum_probs=137.4

Q ss_pred             CCCcHHHHHHHHHHHHHHHhhCCCC----CeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceec
Q 030116           29 TVDTTSVTQRLQKELMSLMMSGGDL----GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFE  104 (182)
Q Consensus        29 ~~~~~~~~~RL~~El~~l~~~~~~~----g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~  104 (182)
                      +..+..+.+||++|+++|++ +++.    ++.+.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.
T Consensus        71 ~~~s~~~~kRL~kEl~~L~k-~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~  149 (323)
T 3ceg_A           71 DANSAARARRLAQEAVTLST-SLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE  149 (323)
T ss_dssp             CCCCHHHHHHHHHHHHHHHH-HCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHh-CCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence            34567899999999999999 6665    455677889999999999999999999999999999999999999999999


Q ss_pred             cc-----cCCCceeCCCcEEeecCC-------CccCCCC-CHHHHHHHHHHhhc--CCCCCCcccHHH--HHHhhch-HH
Q 030116          105 TM-----CFHPNVDQYGNICLDILQ-------DKWSSAY-DCRTILLSIQSLLG--EPNPESPLNSYA--AALLNNK-EG  166 (182)
Q Consensus       105 t~-----i~HPni~~~G~icl~~l~-------~~W~p~~-~i~~vL~~i~~ll~--~p~~~~p~N~~a--~~~~~~~-~~  166 (182)
                      |+     ||||||+.+|+|||++|.       ++|+|++ +|.+||.+|++||.  +|++++|+|.++  +.+|.++ ++
T Consensus       150 T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~  229 (323)
T 3ceg_A          150 TTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSRE  229 (323)
T ss_dssp             CSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHH
T ss_pred             ccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHH
Confidence            98     999999999999999997       6899999 89999999999996  788899999987  6789999 99


Q ss_pred             HHHHHhhcccccc
Q 030116          167 CIHMFSLSPVYYH  179 (182)
Q Consensus       167 f~~~a~~~~~~~~  179 (182)
                      |.++||+++++|.
T Consensus       230 Y~~~vr~~t~k~A  242 (323)
T 3ceg_A          230 YDGNIRQATVKWA  242 (323)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=2.9e-40  Score=255.05  Aligned_cols=125  Identities=28%  Similarity=0.389  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCC-eEEEec-CCC--CceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116           33 TSVTQRLQKELMSLMMSGGDLG-VSAFPE-GES--IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF  108 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g-~~~~~~-~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  108 (182)
                      ..+.+||++|+++|++ ++++| +++.+. ++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus        34 ~p~~~RL~kEl~~l~~-~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~  112 (170)
T 2hlw_A           34 VPRNFRLLEELEEGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN  112 (170)
T ss_dssp             CCHHHHHHHHHHHHHH-CCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCC
T ss_pred             CHHHHHHHHHHHHHHh-CCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccc
Confidence            4578999999999999 88888 677774 454  899999999999999999999999999999999999999999999


Q ss_pred             CCcee-CCCcEEeecCC--CccCCCCCHHHHHHHHHHhhc-CCCCCCcccHHHH
Q 030116          109 HPNVD-QYGNICLDILQ--DKWSSAYDCRTILLSIQSLLG-EPNPESPLNSYAA  158 (182)
Q Consensus       109 HPni~-~~G~icl~~l~--~~W~p~~~i~~vL~~i~~ll~-~p~~~~p~N~~a~  158 (182)
                      ||||+ .+|+||+++|.  ++|+|+++|++||.+|++||. +||.++|+|.|||
T Consensus       113 HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  166 (170)
T 2hlw_A          113 MNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  166 (170)
T ss_dssp             CSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred             cCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence            99999 69999999997  899999999999999999997 5999999999986

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.7e-39  Score=241.34  Aligned_cols=109  Identities=41%  Similarity=0.729  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEE--ecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC--CCc
Q 030116           36 TQRLQKELMSLMMSGGDLGVSAF--PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF--HPN  111 (182)
Q Consensus        36 ~~RL~~El~~l~~~~~~~g~~~~--~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPn  111 (182)
                      .+||++|+++|++ ++++|+++.  +.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|  |||
T Consensus        24 ~~RL~kEl~~l~~-~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPN  102 (136)
T 2a7l_A           24 QKRLQKELLALQN-DPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPH  102 (136)
T ss_dssp             CHHHHHHHHHHHH-SCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTT
T ss_pred             HHHHHHHHHHHHh-CCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCcc
Confidence            4999999999999 899999865  77899999999999999999999999999999999999999999999999  999


Q ss_pred             eeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhc
Q 030116          112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLG  145 (182)
Q Consensus       112 i~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~  145 (182)
                      |+.+|+||+++|+++|+|+++|++||.+|++||.
T Consensus       103 V~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A          103 VYSNGHICLSILTEDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             BCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             CCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999984

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.7e-38  Score=246.16  Aligned_cols=119  Identities=30%  Similarity=0.500  Sum_probs=104.9

Q ss_pred             CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCC
Q 030116           31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP  110 (182)
Q Consensus        31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP  110 (182)
                      .+..+.+||++|+++|++ ++++||.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+  ||
T Consensus        11 ~~~~a~~RL~kEl~~l~~-~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~   87 (187)
T 2f4w_A           11 APTTATQRLKQDYLRIKK-DPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NG   87 (187)
T ss_dssp             ---CHHHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CS
T ss_pred             CccHHHHHHHHHHHHHHh-CCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cc
Confidence            344688999999999999 899999999999999999999999999999999999999999999999999999999  99


Q ss_pred             ceeCCCcEEeecC---CCccCCCCCHHHHHHHHHHhhcCCCCCCc
Q 030116          111 NVDQYGNICLDIL---QDKWSSAYDCRTILLSIQSLLGEPNPESP  152 (182)
Q Consensus       111 ni~~~G~icl~~l---~~~W~p~~~i~~vL~~i~~ll~~p~~~~p  152 (182)
                      ||+.+|+|||++|   .++|+|+++|.+||.+|++||.+|+++..
T Consensus        88 ~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g  132 (187)
T 2f4w_A           88 RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG  132 (187)
T ss_dssp             SBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred             eeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence            9999999999999   68999999999999999999999887644

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=100.00  E-value=2.7e-38  Score=247.33  Aligned_cols=129  Identities=22%  Similarity=0.355  Sum_probs=112.1

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceEEEEEEcC-CCCCCCC-----------CEEE
Q 030116           21 KQPVSSPNTVDTTSVTQRLQKELMSLMMSGG---DLGVSAFPEGESIFTWIGTIEGG-KGTMYEG-----------LSYK   85 (182)
Q Consensus        21 ~~~~~~~~~~~~~~~~~RL~~El~~l~~~~~---~~g~~~~~~~~~~~~w~~~i~Gp-~~tpy~g-----------g~f~   85 (182)
                      .+.........+..+.+||++||++|++ ++   +.|+++.++++|+++|+++|.|| ++|||+|           |.|+
T Consensus        14 ~~~~~~g~~~~s~~a~~RL~kEl~~l~~-~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~   92 (186)
T 1zuo_A           14 LVPRGSGAVSGSVQASDRLMKELRDIYR-SQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYIL   92 (186)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHT-SHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEE
T ss_pred             cccccCCcccccHHHHHHHHHHHHHHHh-CCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEE
Confidence            3333444445566799999999999998 76   68899999999999999999997 8999998           8999


Q ss_pred             EEEEeCCCCCCCCCcceeccccCCC-ceeCCCcEEeecCC-CccCCCCCHHHHHHHHHHhhcCCCCC
Q 030116           86 LSLRFPLDYPFKPPQVKFETMCFHP-NVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPE  150 (182)
Q Consensus        86 ~~i~fp~~YP~~pP~v~f~t~i~HP-ni~~~G~icl~~l~-~~W~p~~~i~~vL~~i~~ll~~p~~~  150 (182)
                      ++|.||++||++||+|+|.+++||| ||+.+|.|||++|. ++|+|+++|++||.+|++||.+|+.+
T Consensus        93 l~i~fp~~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~  159 (186)
T 1zuo_A           93 LNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKAR  159 (186)
T ss_dssp             EEEECCTTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCE
T ss_pred             EEEECCCCCCCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChh
Confidence            9999999999999999999999999 69999999999996 79999999999999999999988754

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.94  E-value=6.2e-28  Score=182.87  Aligned_cols=120  Identities=18%  Similarity=0.279  Sum_probs=102.7

Q ss_pred             CCCcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCC----------EEEEEEEeCCCCCCCC
Q 030116           29 TVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGL----------SYKLSLRFPLDYPFKP   98 (182)
Q Consensus        29 ~~~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~p   98 (182)
                      .-+.....+||++|++.|++       ++.+..+|++.|.+.+.||+||+|+||          .|.++|.||++||.+|
T Consensus        27 p~~~~~w~~RL~eE~k~L~k-------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~P   99 (172)
T 2z6o_A           27 PRDRELWVQRLKEEYQSLIR-------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTA   99 (172)
T ss_dssp             TTCTHHHHHHHHHHHHHHHH-------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSC
T ss_pred             CCccHHHHHHHHHHHHHHHH-------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCC
Confidence            44567899999999999998       466778899999999999999999999          9999999999999999


Q ss_pred             Ccceeccc-cCCCceeCCCcEEeecC-CC---ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhc
Q 030116           99 PQVKFETM-CFHPNVDQYGNICLDIL-QD---KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN  163 (182)
Q Consensus        99 P~v~f~t~-i~HPni~~~G~icl~~l-~~---~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~  163 (182)
                      |+|+|.++ +|||||+.+|+|||+++ +.   .|+|.++|.++|.-        ....++..|+..+...
T Consensus       100 PeV~F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~~  161 (172)
T 2z6o_A          100 PEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQK  161 (172)
T ss_dssp             CCCBCGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHHH
T ss_pred             CeeeeCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhhhHHHHHc
Confidence            99999998 99999999999999999 44   45599999999842        2233466666666544

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.80  E-value=1.1e-19  Score=138.39  Aligned_cols=114  Identities=23%  Similarity=0.329  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHhhCCC--CCeEEEecCCCCceEEEEEEcCCCCCCCCCE---EEEEEEeCCCCCCCCCcceeccc-----
Q 030116           37 QRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLS---YKLSLRFPLDYPFKPPQVKFETM-----  106 (182)
Q Consensus        37 ~RL~~El~~l~~~~~~--~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~-----  106 (182)
                      +|..+|+..+.+..+.  +...++..+|....+-+.+.|.-..+|+||.   |.+.|.||.+||++||.+.|.++     
T Consensus        31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~  110 (162)
T 3r3q_A           31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN  110 (162)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred             hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence            4667787777652332  2233455567777788888887779999999   88999999999999999988651     


Q ss_pred             -----cC-CCceeCCCcEEeecCCCccCC-CCCHHHHHHHHHHhhcCCCCCC
Q 030116          107 -----CF-HPNVDQYGNICLDILQDKWSS-AYDCRTILLSIQSLLGEPNPES  151 (182)
Q Consensus       107 -----i~-HPni~~~G~icl~~l~~~W~p-~~~i~~vL~~i~~ll~~p~~~~  151 (182)
                           |+ |||||.+|+||+++|. +|++ +.++.+||.+|.++|.+|+++.
T Consensus       111 ~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          111 TISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             TSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             ccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence                 77 9999999999999994 7999 6899999999999999999875

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.77  E-value=1e-19  Score=135.05  Aligned_cols=100  Identities=22%  Similarity=0.423  Sum_probs=84.8

Q ss_pred             CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCC----------EEEEEEEeCCCCCCCCCc
Q 030116           31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGL----------SYKLSLRFPLDYPFKPPQ  100 (182)
Q Consensus        31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~  100 (182)
                      +.....+||+.||..|-+       ++....++-..|...+.|++||+|.|+          .|.++++||.+||..||.
T Consensus        31 d~~~w~~RlkeEy~alI~-------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPe  103 (168)
T 3kpa_A           31 DGDKWTARLKEEYASLIT-------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPE  103 (168)
T ss_dssp             STHHHHHHHHHHHHHHHH-------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred             CHHHHHHHHHHHHHHHHH-------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCE
Confidence            456799999999999988       566666677799999999999999999          999999999999999999


Q ss_pred             ceeccc-cCCCceeCCCcEEeecC-CCcc---CCCCCHHHHH
Q 030116          101 VKFETM-CFHPNVDQYGNICLDIL-QDKW---SSAYDCRTIL  137 (182)
Q Consensus       101 v~f~t~-i~HPni~~~G~icl~~l-~~~W---~p~~~i~~vL  137 (182)
                      |+|.+. .+|||++.+|+|||++. ..-|   .|.++|...|
T Consensus       104 I~Fp~ldgkt~kmYr~GkICLdIhwkPlW~~n~P~fGiahal  145 (168)
T 3kpa_A          104 IALPELEGKTVKMYRGGKICMTTHFFPLWARNVPYFGISHVL  145 (168)
T ss_dssp             CBCGGGTTTCSSEETTTEECCCTTHHHHHHHTTTTCCHHHHH
T ss_pred             eecccccCcCccccCCCcEEeccccchhhHhcCCchhHHHHH
Confidence            999995 89999999999999987 2223   3445665543

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.55  E-value=1.7e-14  Score=108.00  Aligned_cols=100  Identities=24%  Similarity=0.407  Sum_probs=78.9

Q ss_pred             HHHHHHHHhhCCCCCeEEEe---cCCCCceEEEEEEcCCCCCCCCCEEEE--EEEeCCCCCCCCCcceeccc------cC
Q 030116           40 QKELMSLMMSGGDLGVSAFP---EGESIFTWIGTIEGGKGTMYEGLSYKL--SLRFPLDYPFKPPQVKFETM------CF  108 (182)
Q Consensus        40 ~~El~~l~~~~~~~g~~~~~---~~~~~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i~  108 (182)
                      .+|+..+.+.-+........   ...++..|.++|.    .+|+|+.|.+  .|.||++||++||.+ |+++      ..
T Consensus        26 ~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~  100 (146)
T 3obq_A           26 VRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKT  100 (146)
T ss_dssp             HHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECC
T ss_pred             HHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECC
Confidence            45666665522322222211   1358889999998    5799999994  999999999999999 7766      58


Q ss_pred             CCceeCCCcEEeecCCCccCC-CCCHHHHHHHHHHhhc
Q 030116          109 HPNVDQYGNICLDILQDKWSS-AYDCRTILLSIQSLLG  145 (182)
Q Consensus       109 HPni~~~G~icl~~l~~~W~p-~~~i~~vL~~i~~ll~  145 (182)
                      |||||.+|+||+++|. +|++ ..++.++|..++++|.
T Consensus       101 ~~~Vd~~G~i~lpyL~-~W~~~~snL~~ll~~l~~~F~  137 (146)
T 3obq_A          101 GKHVDANGKIYLPYLH-EWKHPQSDLLGLIQVMIVVFG  137 (146)
T ss_dssp             BTTBCTTCBBCCHHHH-TCCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEeccccc-ccCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999995 4987 7899999999999997

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.38  E-value=0.039  Score=39.23  Aligned_cols=68  Identities=16%  Similarity=0.161  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecc
Q 030116           35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET  105 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t  105 (182)
                      ...+...|+.-|+. .-+..+.+.  .+....+.+.|..-.+..-..-.+.+.|.||.+||..||.+.+.+
T Consensus        11 ~~e~q~~EleaL~s-Iy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           11 YGEEQRNELEALES-IYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHH-HCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             hHHHHHHHHHHHHH-HccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            45566789988886 333444332  223456666665322222233478899999999999999987654

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=95.30  E-value=0.18  Score=36.17  Aligned_cols=71  Identities=13%  Similarity=0.113  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEEEecC------CCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecc
Q 030116           33 TSVTQRLQKELMSLMMSGGDLGVSAFPEG------ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET  105 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~------~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t  105 (182)
                      .....+-..|+.-|+. .-+..+.+....      +....+.+.|.+..+ .-..-.+.+.|.+|.+||..+|.|.+.+
T Consensus         9 ~~~~e~q~~EleaL~S-IY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A            9 DQYYEIQCNELEAIRS-IYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN   85 (138)
T ss_dssp             HHHHHHHHHHHHHHHT-TSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred             cchHHHHHHHHHHHHH-HChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence            3445566788888876 433333322111      124567777773222 2123478899999999999999998754

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=95.07  E-value=0.15  Score=36.01  Aligned_cols=68  Identities=18%  Similarity=0.180  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEecC--CCCceEEEEEEcCCCCCC--CCCEEEEEEEeCCCCCCCCCcceeccc
Q 030116           38 RLQKELMSLMMSGGDLGVSAFPEG--ESIFTWIGTIEGGKGTMY--EGLSYKLSLRFPLDYPFKPPQVKFETM  106 (182)
Q Consensus        38 RL~~El~~l~~~~~~~g~~~~~~~--~~~~~w~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t~  106 (182)
                      ....|+.-|+. .-+..+.+....  .....+.+.|..+.+..-  ..-.+.+.|.||.+||..+|.|...+.
T Consensus        12 ~~~~EleaL~S-IY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~   83 (128)
T 2day_A           12 VLPSEVEVLES-IYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   83 (128)
T ss_dssp             HHHHHHHHHHH-HSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHHH-HCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence            46788888876 434445443221  123445555542222111  124788999999999999999987764

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=94.62  E-value=0.51  Score=34.69  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.7

Q ss_pred             EEEEEEEeCCCCCCCCCcceecc
Q 030116           83 SYKLSLRFPLDYPFKPPQVKFET  105 (182)
Q Consensus        83 ~f~~~i~fp~~YP~~pP~v~f~t  105 (182)
                      .+.++|.+|.+||..+|.|...+
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~   98 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRS   98 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEEC
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEe
Confidence            79999999999999999997655

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=94.16  E-value=0.41  Score=36.63  Aligned_cols=82  Identities=15%  Similarity=0.144  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCCCc
Q 030116           38 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN  117 (182)
Q Consensus        38 RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G~  117 (182)
                      +|.+|+.++-= +     .+.-.+.++...++.+....     |....++|.++.+||.++|.+...-|.-  .      
T Consensus         5 ~li~Ei~~iGW-~-----~l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~~--~------   65 (186)
T 3zqs_A            5 SLIEEIGTLGW-D-----KLVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPVP--F------   65 (186)
T ss_dssp             SHHHHHHHHCG-G-----GEEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSSC--C------
T ss_pred             HHHHHHHHhCC-c-----eeeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCCC--c------
Confidence            57788887621 0     13334678889999888544     6789999999999999999876555531  1      


Q ss_pred             EEeecCCCccCCCCCHHHHHHHHHHhh
Q 030116          118 ICLDILQDKWSSAYDCRTILLSIQSLL  144 (182)
Q Consensus       118 icl~~l~~~W~p~~~i~~vL~~i~~ll  144 (182)
                            .-.|++..++.+++.+++..|
T Consensus        66 ------~~~w~~~ssL~~v~~qF~~~L   86 (186)
T 3zqs_A           66 ------CASWTPQSSLISIYSQFLAAI   86 (186)
T ss_dssp             ------CCCCCTTCCHHHHHHHHHHHH
T ss_pred             ------ccccCCCccHHHHHHHHHHHH
Confidence                  137998899988888777766

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=93.89  E-value=0.38  Score=34.27  Aligned_cols=70  Identities=17%  Similarity=0.142  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCC-----CCceEEEEEEcCCC-C-CCCCCEEEEEEEeCCCCCCCCCcceecc
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-----SIFTWIGTIEGGKG-T-MYEGLSYKLSLRFPLDYPFKPPQVKFET  105 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~-----~~~~w~~~i~Gp~~-t-py~gg~f~~~i~fp~~YP~~pP~v~f~t  105 (182)
                      ....+...|+.-|+. .-+..+.......     ....+.+.|. +.+ . .-..-.+.+.|.||.+||..+|.|.+..
T Consensus        10 ~~~e~q~~EleaL~S-IY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   86 (137)
T 1ukx_A           10 SYSQRQDHELQALEA-IYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN   86 (137)
T ss_dssp             CHHHHHHHHHHHHHH-HTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred             chHHHHHHHHHHHHH-HCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence            345567888888876 3333444322111     1345666665 322 1 0012468999999999999999998743

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.01  E-value=0.25  Score=34.98  Aligned_cols=66  Identities=17%  Similarity=0.232  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhhC-CC-CCeEEEec-CCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecc
Q 030116           38 RLQKELMSLMMSG-GD-LGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET  105 (182)
Q Consensus        38 RL~~El~~l~~~~-~~-~g~~~~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t  105 (182)
                      ....|+..|+. . +. ..+.+... ..+...+.+.|.. .+..-..-.+.+.|.+|.+||..+|.|...+
T Consensus        11 ~q~~EleaL~S-Iy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A           11 PVQEELSVLAA-IFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             HHHHHHHHHHH-HHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             HHHHHHHHHHH-HcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            35678877765 2 21 12322111 1234577777763 2211112478999999999999999987653

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=88.13  E-value=0.36  Score=35.27  Aligned_cols=24  Identities=21%  Similarity=0.588  Sum_probs=20.9

Q ss_pred             EEEEEEEeCCCCCCCCCcceeccc
Q 030116           83 SYKLSLRFPLDYPFKPPQVKFETM  106 (182)
Q Consensus        83 ~f~~~i~fp~~YP~~pP~v~f~t~  106 (182)
                      .+.+.|.+|.+||..||.|.....
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEECT
T ss_pred             eEEEEEECCCCCCCCCCeEEEEcc
Confidence            688999999999999999976653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	4e-40
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	1e-35
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-35
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	7e-35
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	6e-34
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	6e-33
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	9e-33
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	2e-32
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	2e-32
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-32
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	2e-31
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	3e-31
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	1e-30
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	5e-30
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	5e-30
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	1e-29
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	3e-29
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	4e-29
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	6e-29
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	7e-29
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	7e-29
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-28
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	2e-28
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	2e-28
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	6e-28
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	6e-28
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	6e-27
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	1e-26
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	7e-25
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	4e-22
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	1e-20

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score =  131 bits (330), Expect = 4e-40
 Identities = 81/137 (59%), Positives = 111/137 (81%), Gaps = 1/137 (0%)

Query: 29  TVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSL 88
           + +  SV++RLQ+EL +L+MSG D G++AFP+G+++F W+ T++G K T+YE L YKL+L
Sbjct: 4   SKERHSVSKRLQQELRTLLMSG-DPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTL 62

Query: 89  RFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPN 148
            FP DYP+KPP VKF T C+HPNVDQ GNICLDIL++ W+++YD RTILLS+QSLLGEPN
Sbjct: 63  EFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPN 122

Query: 149 PESPLNSYAAALLNNKE 165
             SPLN+ AA + +N+ 
Sbjct: 123 NASPLNAQAADMWSNQT 139

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score =  119 bits (299), Expect = 1e-35
 Identities = 85/132 (64%), Positives = 102/132 (77%), Gaps = 1/132 (0%)

Query: 35  VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G  GT+YE L YKLSL FP  Y
Sbjct: 2   VGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 60

Query: 95  PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
           P+  P VKF T C+HPNVD  GNI LDIL++KWS+ YD RTILLSIQSLLGEPN +SPLN
Sbjct: 61  PYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLN 120

Query: 155 SYAAALLNNKEG 166
           ++AA L  N   
Sbjct: 121 THAAELWKNPTA 132

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score =  119 bits (299), Expect = 2e-35
 Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 1/132 (0%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           +T   +RL ++   +       GVSA P  +++  W   I G   T YE  +++L L F 
Sbjct: 1   STPARRRLMRDFKRMKEDA-PPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 59

Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
            +YP KPP VKF +  FHPNV   G ICLDILQ++W+  YD  +IL SIQSL  +PNP S
Sbjct: 60  EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPAS 119

Query: 152 PLNSYAAALLNN 163
           P N  AA L  +
Sbjct: 120 PANVEAATLFKD 131

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score =  117 bits (295), Expect = 7e-35
 Identities = 55/132 (41%), Positives = 76/132 (57%), Gaps = 1/132 (0%)

Query: 33  TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
           ++  +R+QKEL  + +       SA P+G++I+ W  TI G  G++YEG  + L + F  
Sbjct: 1   STSAKRIQKELAEITLDP-PPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSP 59

Query: 93  DYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152
           DYPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  P
Sbjct: 60  DYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 119

Query: 153 LNSYAAALLNNK 164
           L    A      
Sbjct: 120 LVGSIATQYMTN 131

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score =  116 bits (290), Expect = 6e-34
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 15/142 (10%)

Query: 36  TQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           +  L+K+L  +     D G SA    ++ I+ W   + G   T+YEG  +K  L FP DY
Sbjct: 2   SLLLKKQLADMRRVPVD-GFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDY 60

Query: 95  PFKPPQVKFETMCFHPNVDQYGNICLDILQD-------------KWSSAYDCRTILLSIQ 141
           P KPP++KF +  +HPN+D+ GN+C+ IL D             +W   +   TILLS+ 
Sbjct: 61  PQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVI 120

Query: 142 SLLGEPNPESPLNSYAAALLNN 163
           S+L +PN ESP N  AA +   
Sbjct: 121 SMLTDPNFESPANVDAAKMQRE 142

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score =  112 bits (282), Expect = 6e-33
 Identities = 56/127 (44%), Positives = 76/127 (59%), Gaps = 1/127 (0%)

Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
           +R+QKEL  L         SA P G+ +F W  TI G   + Y+G  + L++ FP DYPF
Sbjct: 4   KRIQKELQDLGRDP-PAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 62

Query: 97  KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
           KPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL   
Sbjct: 63  KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122

Query: 157 AAALLNN 163
            A +   
Sbjct: 123 IARIYKT 129

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score =  112 bits (281), Expect = 9e-33
 Identities = 65/132 (49%), Positives = 79/132 (59%), Gaps = 1/132 (0%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           TT   +RL ++   L       GVS  P  ++I TW   I G + T +E  ++KLSL F 
Sbjct: 1   TTPSRRRLMRDFKKLQEDPPA-GVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 59

Query: 92  LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
            +YP KPP VKF +  FHPNV   G+ICLDILQ++WS  YD   IL SIQSLL EPNP S
Sbjct: 60  EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNS 119

Query: 152 PLNSYAAALLNN 163
           P NS AA L   
Sbjct: 120 PANSLAAQLYQE 131

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score =  111 bits (278), Expect = 2e-32
 Identities = 53/126 (42%), Positives = 74/126 (58%), Gaps = 1/126 (0%)

Query: 38  RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97
           R+ KE   L+      G+ A P+  +   +   I G + + +EG ++KL L  P +YP  
Sbjct: 6   RIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 64

Query: 98  PPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYA 157
            P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL +  
Sbjct: 65  APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 124

Query: 158 AALLNN 163
           A     
Sbjct: 125 AEQWKT 130

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score =  111 bits (279), Expect = 2e-32
 Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 33  TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
           ++   R+QK++  L +      +S F + + +  +   I       Y+   +  S +   
Sbjct: 2   SAAQLRIQKDINELNLPKTC-DIS-FSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQ 58

Query: 93  DYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152
            YP  PP+VK ETM +HPN+D  GN+CL+IL++ W       +I+  +Q L  EPNPE P
Sbjct: 59  GYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDP 118

Query: 153 LNSYAAALL-NNKE 165
           LN  AA +L NN+ 
Sbjct: 119 LNKEAAEVLQNNRR 132

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score =  111 bits (278), Expect = 2e-32
 Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 1/132 (0%)

Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           S+ +R+ KE   L+      G++A P  +++  +  TIEG + + YE   ++L L  P D
Sbjct: 3   SLPKRIIKETEKLVSDPVP-GITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61

Query: 94  YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           YP + P+V+F T  +HPN+D+ G ICLD+L+  WS A   RT+LLSIQ+LL  PNP  PL
Sbjct: 62  YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 121

Query: 154 NSYAAALLNNKE 165
            +  A      E
Sbjct: 122 ANDVAEDWIKNE 133

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 2e-31
 Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 5/115 (4%)

Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPE--GESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
           S+ +RLQKEL++L       G++   +    SI  WI  +EG  GT+YEG  ++L  +F 
Sbjct: 3   SMQKRLQKELLALQNDPPP-GMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFS 61

Query: 92  LDYPFKPPQVKFET--MCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL 144
             YPF  PQV F    +  HP+V   G+ICL IL + WS A   +++ LSI S+L
Sbjct: 62  SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISML 116

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score =  109 bits (272), Expect = 3e-31
 Identities = 55/139 (39%), Positives = 72/139 (51%), Gaps = 13/139 (9%)

Query: 38  RLQKELMSL------------MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYK 85
           RL KEL  +                   GVSA   G  I  W G I G  GT YEG  + 
Sbjct: 5   RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFT 64

Query: 86  LSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLL 144
           L +  P DYP+ PP++KF T  +HPN+    G ICLDIL+ +WS A   RT LLSIQ++L
Sbjct: 65  LDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAML 124

Query: 145 GEPNPESPLNSYAAALLNN 163
            +P P  P ++  A ++  
Sbjct: 125 ADPVPTDPQDAEVAKMMIE 143

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score =  107 bits (267), Expect = 1e-30
 Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 4/130 (3%)

Query: 36  TQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           ++RL KEL  +   G           E+ + TW G I       Y+  ++++ + FP +Y
Sbjct: 1   SRRLMKELEEIRKCGMK-NFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 58

Query: 95  PFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           PFKPP++ F+T  +HPN+D+ G +CL ++  + W  A     ++ S+ +L+ +P PE PL
Sbjct: 59  PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 118

Query: 154 NSYAAALLNN 163
            +  A   + 
Sbjct: 119 RADLAEEYSK 128

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score =  105 bits (264), Expect = 5e-30
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 8/134 (5%)

Query: 36  TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYP 95
            +R + + M L  S        +P  +++  +    +G +GT YE  ++ L ++ P DYP
Sbjct: 2   NRRREMDYMRLCNST----RKVYPS-DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYP 56

Query: 96  FKPPQVKFETMCFHPNVDQYGN-ICLDILQDKWSSAYDCRT-ILLSIQSLLGEPNPESPL 153
           FK P + F     HPNVD+    +CLD++   W+  Y       + +  LL  PNP  PL
Sbjct: 57  FKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPL 116

Query: 154 NSYAAALL-NNKEG 166
           N  AA LL  ++ G
Sbjct: 117 NVQAAHLLHADRVG 130

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score =  105 bits (262), Expect = 5e-30
 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           S  +R+ KE+ ++           F     I    GT  G  GT YEG  + + +  P++
Sbjct: 1   SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60

Query: 94  YPFKPPQVKFETMCFHPNVDQYGNI-CLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152
           YPFKPP+++F+T  +HPN+       CLDIL++ WS     ++ L+S+Q+LL  P P  P
Sbjct: 61  YPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDP 120

Query: 153 LNSYAAALLNN 163
            ++  A     
Sbjct: 121 QDAEVAQHYLR 131

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score =  104 bits (261), Expect = 1e-29
 Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 1/130 (0%)

Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
            + + + KE+ +L     D G+  FP  E +     TIEG +GT Y G  +++ L    D
Sbjct: 6   HIIRLVYKEVTTLTADPPD-GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKD 64

Query: 94  YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
           +P  PP+  F T  FHPNV   G IC+++L+  W++    R +LL+I+ LL  PNPES L
Sbjct: 65  FPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESAL 124

Query: 154 NSYAAALLNN 163
           N  A  LL  
Sbjct: 125 NEEAGRLLLE 134

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  103 bits (257), Expect = 4e-29
 Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 3/131 (2%)

Query: 36  TQRLQKELMSLMMSG--GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
            QR+++E   ++ S       +      E+     G I G   T YEG  Y+L ++ P  
Sbjct: 6   VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPET 65

Query: 94  YPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152
           YPF PP+V+F T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    P+ P
Sbjct: 66  YPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDP 125

Query: 153 LNSYAAALLNN 163
            ++  A     
Sbjct: 126 QDAVVANQYKQ 136

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score =  102 bits (254), Expect = 6e-29
 Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 15/124 (12%)

Query: 38  RLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
            L+++L  L  +  + G SA    ++ ++ W   I G   T+YEG  +K  L FP DYP 
Sbjct: 3   LLRRQLAELNKNPVE-GFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPL 61

Query: 97  KPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSL 143
           +PP++KF T  +HPNVD+ G++C+ IL             +++W   +   TI++S+ S+
Sbjct: 62  RPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISM 121

Query: 144 LGEP 147
           L +P
Sbjct: 122 LADP 125

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score =  102 bits (255), Expect = 7e-29
 Identities = 45/130 (34%), Positives = 75/130 (57%), Gaps = 4/130 (3%)

Query: 37  QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
             L ++   L  +    G++A P  E +  W   IEG + ++++GL ++L++ F  +Y +
Sbjct: 7   LLLHRDFCDLKENNYK-GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNY 65

Query: 97  KPPQVKFETMCFHPNVDQYGN-ICLDILQ--DKWSSAYDCRTILLSIQSLLGEPNPESPL 153
            PP VKF T+ FHPNVD +    C+D L   +KW++ Y   +ILL++Q +L  P  E+P+
Sbjct: 66  APPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPV 125

Query: 154 NSYAAALLNN 163
           N  AA +L  
Sbjct: 126 NLEAARILVK 135

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score =  101 bits (252), Expect = 7e-29
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 38  RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97
           R+QKEL + + +   +  +      +I  WI    G + T+Y    YKL + FP DYP K
Sbjct: 2   RIQKELHNFLNNP-PINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLK 60

Query: 98  PPQVKFETMCF-HPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL 144
           PP V F      H +V   G+ICL +L D ++ +     ++LSI S+L
Sbjct: 61  PPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISML 108

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score =  102 bits (255), Expect = 1e-28
 Identities = 49/146 (33%), Positives = 69/146 (47%), Gaps = 15/146 (10%)

Query: 32  TTSVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRF 90
           + +  +RL KEL  L+      G+ A P+ E+ IF W   I+G   T Y    +   L F
Sbjct: 1   SKTAQKRLLKELQQLIKD-SPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 59

Query: 91  PLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTIL 137
           P DYP  PP++ F     HPN+   G +C+ IL             +++WS       IL
Sbjct: 60  PKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKIL 119

Query: 138 LSIQSLLGEPNPESPLNSYAAALLNN 163
           LS+ S+L EPN ES  N  A  L  +
Sbjct: 120 LSVMSMLSEPNIESGANIDACILWRD 145

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score =  101 bits (253), Expect = 2e-28
 Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 36  TQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           + R+ KEL  L        +      ++ +  W   +       Y   ++ L + FP +Y
Sbjct: 2   SMRVVKELEDLQKKPPP-YLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEY 59

Query: 95  PFKPPQVKFETMCFHPNVDQYGNICLDILQDKW-SSAYDCRTILLSIQSLLGEPNPESPL 153
           PFKPP +KF T  +HPNVD+ G ICL I+  +          +L ++  L+  PN   PL
Sbjct: 60  PFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPL 119

Query: 154 NSYAAALL-NNKE 165
               A LL  N E
Sbjct: 120 RMDLADLLTQNPE 132

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score =  100 bits (251), Expect = 2e-28
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 38  RLQKELMSLMMSGGDLGVS---AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           RL +EL       GD  VS      E  ++  W G I G   T+YE   Y L +     Y
Sbjct: 9   RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 68

Query: 95  PFKPPQVKFETMCFHPNVDQYGNI----CLDILQDKWSSAYDCRTILLSIQSLLGEP-NP 149
           P  PP V+F T      V+    +     + +L  KW ++Y  + +L  ++ L+    N 
Sbjct: 69  PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENM 127

Query: 150 ESPLN 154
           + P  
Sbjct: 128 KLPQP 132

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score =  100 bits (249), Expect = 6e-28
 Identities = 48/135 (35%), Positives = 62/135 (45%), Gaps = 8/135 (5%)

Query: 36  TQRLQKELMSLMMSGGDLGVSAFPEGES-----IFTWIGTIEGGKGTMYEGLSYKLSLRF 90
             RL +E  +        G  A P         +  W   I G KGT +EG  +KL + F
Sbjct: 4   LSRLAQERKAWRKDH-PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 62

Query: 91  PLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPN 148
             DYP  PP+ KFE   FHPNV   G + L IL++   W  A   + ILL IQ LL EPN
Sbjct: 63  KDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPN 122

Query: 149 PESPLNSYAAALLNN 163
            + P  + A  +   
Sbjct: 123 IQDPAQAEAYTIYCQ 137

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score =  100 bits (249), Expect = 6e-28
 Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 8/137 (5%)

Query: 34  SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
           + TQRL+++ + +        + A P   +I  W   + G + T YEG  Y   L FP +
Sbjct: 1   TATQRLKQDYLRIKKDPVP-YICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPRE 59

Query: 94  YPFKPPQVKFETMCFHPNVDQYGNICLDIL---QDKWSSAYDCRTILLSIQSLLGEPNP- 149
           +PFKPP +   T       +    +CL I     D W+ A+   TIL  + S + E  P 
Sbjct: 60  FPFKPPSIYMITPNGRFKCN--TRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT 117

Query: 150 -ESPLNSYAAALLNNKE 165
             S   S         +
Sbjct: 118 LGSIETSDFTKRQLAVQ 134

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 97.0 bits (241), Expect = 6e-27
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 38  RLQKELMSLMMSGGDLGVSAFPEGE---SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
           RL +EL       G    S         ++  W GTI G   + +E   Y LS+    +Y
Sbjct: 8   RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 67

Query: 95  PFKPPQVKFETMCFHPNVDQY-GNICLDILQDK-WSSAYDCRTILLSIQSLLGEPNPESP 152
           P  PP+V F +    P V+   G +  D    + W  AY   T+LL ++  +  P  +  
Sbjct: 68  PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKL 127

Query: 153 LN 154
             
Sbjct: 128 RQ 129

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (239), Expect = 1e-26
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 9/121 (7%)

Query: 38  RLQKELMSLMMSGGDL--GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLR--FPLD 93
              +E ++++    DL   + ++   +     +  + G     Y G +Y + +       
Sbjct: 18  LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDT 77

Query: 94  YPFKPPQVKFETMC-----FHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPN 148
           YP+ PP    +           +VD  G I L  L +      D   ++  +  + G+  
Sbjct: 78  YPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEP 137

Query: 149 P 149
           P
Sbjct: 138 P 138

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 92.2 bits (228), Expect = 7e-25
 Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 36  TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYP 95
             RL++EL  L       G++ + + + +      I GG  T YE   +KL +  P  YP
Sbjct: 4   ASRLKRELHMLATEPPP-GITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYP 62

Query: 96  FKPPQVKFETMCFHPNVDQYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEPNPES 151
           F+PPQ++F T  +HPN+D  G ICLD+L    +  W  + +  T+L SIQ L+ EPNP+ 
Sbjct: 63  FEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDD 122

Query: 152 PLNSYAAALLNNKE 165
           PL +  ++     +
Sbjct: 123 PLMADISSEFKYNK 136

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (211), Expect = 4e-22
 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 18/153 (11%)

Query: 32  TTSVTQRLQKELMSLMMSG--GDLGVSAFPEGESIFTWIGTIEGG------------KGT 77
           +   + RL KEL  +  S        S     +S++ W   ++                 
Sbjct: 2   SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKE 61

Query: 78  MYEGLSYKLSLRFPLDYPFKPPQVKFETMCF-HPNVDQYGNICLDIL-QDKWSSAYDCRT 135
                   L+  F  ++PF PP V+          V   G +C+++L +  WSSAY   +
Sbjct: 62  KEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIES 121

Query: 136 ILLSIQSLLGEPNPE--SPLNSYAAALLNNKEG 166
           +++ I + L +         N     L   ++ 
Sbjct: 122 VIMQINATLVKGKARVQFGANKNQYNLARAQQS 154

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.6 bits (201), Expect = 1e-20
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 16/128 (12%)

Query: 38  RLQKELMSLMMSGGDL--GVSAFPEGESIFTWIGTIEGGKGTMYEG---LSYKLSLRFPL 92
               + ++L+ +   L      F   +     + +I G   T  +G    S  + +  P 
Sbjct: 23  TTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPS 82

Query: 93  DYPFKPPQVKFETMC-----------FHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQ 141
            YP KPP +                     +D  G I L IL     +A +   ++  + 
Sbjct: 83  MYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELM 142

Query: 142 SLLGEPNP 149
           SLL EP  
Sbjct: 143 SLLHEPPQ 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	100.0
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.83
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.76
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	97.98
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	96.06
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	93.74
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	89.78
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	89.06

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=2.7e-48  Score=292.24  Aligned_cols=145  Identities=39%  Similarity=0.646  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      .+.|||++|+++|++ +++.|+++.+.++|++.|+++|.||.+|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus         2 ~~~kRi~~E~~~l~~-~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~   80 (148)
T d1y6la_           2 TSAKRIQKELAEITL-DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNIN   80 (148)
T ss_dssp             HHHHHHHHHHHHHHH-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHhh-CCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceEC
Confidence            588999999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      ++|.||++++.++|+|++++.+||.+|+++|.+|++++|+|.+|+++|++| ++|.++||+++++|.
T Consensus        81 ~~G~iCl~~l~~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~k~A  147 (148)
T d1y6la_          81 SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA  147 (148)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEecCCcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999 999999999999874

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=7.6e-48  Score=290.12  Aligned_cols=145  Identities=44%  Similarity=0.673  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116           33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV  112 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni  112 (182)
                      +.|.|||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||
T Consensus         2 ~pa~rRl~~E~~~l~~-~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI   80 (149)
T d1z3da1           2 TPSRRRLMRDFKKLQE-DPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNV   80 (149)
T ss_dssp             CHHHHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             CHHHHHHHHHHHHHhh-CCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccceeE
Confidence            3478999999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccc
Q 030116          113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYY  178 (182)
Q Consensus       113 ~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~  178 (182)
                      +.+|.||++++.+.|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++| ++|.++||+++++.
T Consensus        81 ~~~G~iCl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~ks  147 (149)
T d1z3da1          81 YADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS  147 (149)
T ss_dssp             CTTCBBCCGGGTTSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEeccccccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 99999999998875

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=9e-48  Score=288.89  Aligned_cols=146  Identities=40%  Similarity=0.680  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      .|+|||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         1 ~a~kRL~~E~~~l~~-~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   79 (147)
T d1z2ua1           1 MALKRIQKELQDLGR-DPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   79 (147)
T ss_dssp             HHHHHHHHHHHHHHH-SCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             CHHHHHHHHHHHHHh-CCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeEC
Confidence            378999999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccccc
Q 030116          114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYHF  180 (182)
Q Consensus       114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~~  180 (182)
                      ++|+||++++.+.|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++| ++|.++||+++++|.+
T Consensus        80 ~~G~iCl~~l~~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~k~A~  147 (147)
T d1z2ua1          80 SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM  147 (147)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCEeeehhcccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999 9999999999999864

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=8.4e-48  Score=290.49  Aligned_cols=146  Identities=34%  Similarity=0.551  Sum_probs=142.4

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116           32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN  111 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  111 (182)
                      +..++|||++||++|++ ++++|+++.+.++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++||||
T Consensus         4 ~~~~~kRl~kEl~~l~~-~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   82 (151)
T d1zdna1           4 PPHIIRLVYKEVTTLTA-DPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPN   82 (151)
T ss_dssp             CHHHHHHHHHHHHHHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CHHHHHHHHHHHHHHHh-CCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCCce
Confidence            45689999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccc
Q 030116          112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYY  178 (182)
Q Consensus       112 i~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~  178 (182)
                      |+.+|.||++++.++|+|+++|.+||.+|+++|.+|+.++|+|.+||++|++| ++|.++||+++++|
T Consensus        83 I~~~G~ic~~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~ar~~~~~~  150 (151)
T d1zdna1          83 VGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIH  150 (151)
T ss_dssp             BCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             ecCCCCcccccccccCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999 99999999999886

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=1.6e-47  Score=289.28  Aligned_cols=146  Identities=39%  Similarity=0.661  Sum_probs=141.9

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116           32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN  111 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  111 (182)
                      |+.|.|||++||++|++ +++.||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus         1 st~A~kRl~~El~~l~~-~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPn   79 (153)
T d1ayza_           1 STPARRRLMRDFKRMKE-DAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN   79 (153)
T ss_dssp             CCHHHHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CCHHHHHHHHHHHHHhH-CCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccC
Confidence            34688999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccc
Q 030116          112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYY  178 (182)
Q Consensus       112 i~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~  178 (182)
                      |+.+|.||++++.+.|+|+++|.+||.+|+++|.+|+.++|+|.|||++|+++ ++|.++||++++++
T Consensus        80 I~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~~~~~~~f~~~~~~~~~ks  147 (153)
T d1ayza_          80 VYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKS  147 (153)
T ss_dssp             BCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCCccccccccccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999 99999999998875

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=2.5e-47  Score=286.42  Aligned_cols=142  Identities=58%  Similarity=0.989  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeC
Q 030116           35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ  114 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~  114 (182)
                      +.|||++|+++|++ +++.|+++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.
T Consensus         2 ~~kRl~~El~~l~~-~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~   80 (146)
T d1i7ka_           2 VGKRLQQELMTLMM-SGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT   80 (146)
T ss_dssp             HHHHHHHHHHHHHH-HCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT
T ss_pred             HHHHHHHHHHHHhh-CCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCCC
Confidence            67999999999999 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccc
Q 030116          115 YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYY  178 (182)
Q Consensus       115 ~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~  178 (182)
                      +|.||++++.++|+|++++.+||.+|+++|.+|++++|+|.+||++|+ | ++|.++|+++.+|+
T Consensus        81 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~~-n~~~f~k~~~~~~~K~  144 (146)
T d1i7ka_          81 QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQ  144 (146)
T ss_dssp             TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHTT-SHHHHHHHHHHHHHTT
T ss_pred             CCccccccccccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHhh-CHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999996 7 99999999998876

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=5.5e-48  Score=291.80  Aligned_cols=145  Identities=37%  Similarity=0.613  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      ++.|||++|+++|++ +++.||++.+.++|+++|+++|.||.+|||+||+|+|+|.||++||++||+|+|.|++|||||+
T Consensus         3 ~~~rRl~~E~~~l~~-~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~   81 (152)
T d1jata_           3 SLPKRIIKETEKLVS-DPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID   81 (152)
T ss_dssp             SCCHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHh-CCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCC
Confidence            356899999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      .+|.+|++++.++|+|+++|.+||.+|++||.+|+.++|+|.+||++|.+| ++|.++||+++++|.
T Consensus        82 ~~G~icl~~~~~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~d~~~f~~~~r~~~~~~a  148 (152)
T d1jata_          82 RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA  148 (152)
T ss_dssp             TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CCCCeeeccccccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999 999999999998875

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=6.9e-47  Score=288.97  Aligned_cols=147  Identities=34%  Similarity=0.579  Sum_probs=140.4

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCCeEEEec-CCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCC
Q 030116           32 TTSVTQRLQKELMSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP  110 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP  110 (182)
                      +..|+|||++|+++|++ +++.|+++.+. ++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.+++|||
T Consensus         1 s~~a~kRL~~E~~~l~~-~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   79 (164)
T d2ucza_           1 SKTAQKRLLKELQQLIK-DSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP   79 (164)
T ss_dssp             CHHHHHHHHHHHHHHHH-SCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred             CHHHHHHHHHHHHHHhh-CCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceec
Confidence            45799999999999999 99999999986 67999999999999999999999999999999999999999999999999


Q ss_pred             ceeCCCcEEeecCC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccc
Q 030116          111 NVDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPV  176 (182)
Q Consensus       111 ni~~~G~icl~~l~-------------~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~  176 (182)
                      ||+.+|+||+++|.             +.|+|+++|.+||.+|+++|.+|++++|+|.+||++|+++ ++|.++||++++
T Consensus        80 nv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~~r~~~~  159 (164)
T d2ucza_          80 NIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSIL  159 (164)
T ss_dssp             TBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             eEcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence            99999999999994             4699999999999999999999999999999999999999 999999999998


Q ss_pred             ccc
Q 030116          177 YYH  179 (182)
Q Consensus       177 ~~~  179 (182)
                      ++.
T Consensus       160 k~~  162 (164)
T d2ucza_         160 KSL  162 (164)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            864

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=9.2e-47  Score=285.44  Aligned_cols=145  Identities=32%  Similarity=0.559  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      .+.+||++|+++|++ +++.||++.+.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|||||+
T Consensus         2 ~~~~Rl~kE~~~l~~-~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~   80 (154)
T d1yh2a1           2 QRASRLKRELHMLAT-EPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID   80 (154)
T ss_dssp             HHHHHHHHHHHHHHH-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHH-CcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCcC
Confidence            578999999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCC----CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          114 QYGNICLDILQ----DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       114 ~~G~icl~~l~----~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      .+|.||++++.    ++|+|++++.+||.+|+++|.+|++++|+|.+|+++|.+| ++|.++||+++++|.
T Consensus        81 ~~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~k~a  151 (154)
T d1yh2a1          81 SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA  151 (154)
T ss_dssp             TTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CCCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            99999999995    6899999999999999999999999999999999999999 999999999999874

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=3.8e-47  Score=286.28  Aligned_cols=143  Identities=38%  Similarity=0.641  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCC
Q 030116           36 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY  115 (182)
Q Consensus        36 ~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~  115 (182)
                      .|||++|+++|++ +++.||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+++||||+.+
T Consensus         4 ~kRl~kEl~~l~~-~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~   82 (149)
T d1j7db_           4 PRRIIKETQRLLA-EPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL   82 (149)
T ss_dssp             CHHHHHHHHHHTT-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred             cHHHHHHHHHHHh-CCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECCC
Confidence            4899999999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          116 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       116 G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      |.||++++.+.|+|++++.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus        83 G~icl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~ar~~~~kyA  147 (149)
T d1j7db_          83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA  147 (149)
T ss_dssp             CBBCCGGGTTSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CcEehHHhcCCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999 999999999999885

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=8.8e-47  Score=286.28  Aligned_cols=143  Identities=56%  Similarity=1.029  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      ++.|||++|+++|++ +++.|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.+++|||||+
T Consensus         9 ~~~kRl~kEl~~l~~-~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   87 (156)
T d2e2ca_           9 SVSKRLQQELRTLLM-SGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD   87 (156)
T ss_dssp             CHHHHHHHHHHHHHH-HCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHhH-CCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCCCCC
Confidence            578999999999999 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhchHHHHHHHhhcccc
Q 030116          114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEGCIHMFSLSPVY  177 (182)
Q Consensus       114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~~~f~~~a~~~~~~  177 (182)
                      .+|.||+++|.++|+|+++|.+||.+|++||.+|+.++|+|.+||++|+++.+|.++|++....
T Consensus        88 ~~G~icl~~l~~~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~~n~~~y~k~~~e~~~~  151 (156)
T d2e2ca_          88 QSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQTEYKKVLHEKYKT  151 (156)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCccccccCCCCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999997557799999987544

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=2.6e-46  Score=283.65  Aligned_cols=145  Identities=33%  Similarity=0.533  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCC-----CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-----SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF  108 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~-----~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  108 (182)
                      .|++||++|+++|++ +++.|+++.|.++     |+++|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++|
T Consensus         2 ~a~~Rl~~E~~~~~~-~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (156)
T d2uyza1           2 IALSRLAQERKAWRK-DHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF   80 (156)
T ss_dssp             HHHHHHHHHHHHHHH-SCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             hHHHHHHHHHHHHHH-CCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeeccccc
Confidence            489999999999999 9999999998854     8999999999999999999999999999999999999999999999


Q ss_pred             CCceeCCCcEEeecCC--CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          109 HPNVDQYGNICLDILQ--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       109 HPni~~~G~icl~~l~--~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      ||||+.+|.+|++++.  ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|.++ ++|.++||+++++|.
T Consensus        81 HPnV~~~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~k~A  154 (156)
T d2uyza1          81 HPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA  154 (156)
T ss_dssp             STTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred             cccccccceeeecccCcccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHC
Confidence            9999999999999995  5799999999999999999999999999999999999999 999999999999884

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.7e-46  Score=281.71  Aligned_cols=147  Identities=33%  Similarity=0.595  Sum_probs=140.9

Q ss_pred             cHHHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116           32 TTSVTQRLQKELMSLMMSG---GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF  108 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~---~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  108 (182)
                      +..+.+||++|+++|++ +   ...++++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus         2 s~~a~~Rl~kE~~~l~~-~~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (154)
T d2bepa1           2 ANIAVQRIKREFKEVLK-SEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   80 (154)
T ss_dssp             CHHHHHHHHHHHHHHHH-CHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             chHHHHHHHHHHHHHHH-CCCCCCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCC
Confidence            45689999999999987 5   4678999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeC-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          109 HPNVDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       109 HPni~~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      ||||++ +|.+|++++.+.|+|++||.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus        81 Hpni~~~~g~ic~~~~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~t~k~A  153 (154)
T d2bepa1          81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA  153 (154)
T ss_dssp             BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CCCeeCCCCccccccccccCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            999998 89999999999999999999999999999999999999999999999999 999999999999874

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=2.8e-46  Score=281.47  Aligned_cols=144  Identities=31%  Similarity=0.576  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEec-CCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           35 VTQRLQKELMSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~~~g~~~~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      +.|||++|+++|++ +++.||++.+. ++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus         2 ~~kRL~~El~~l~~-~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~   80 (149)
T d1fzya_           2 RAKRIMKEIQAVKD-DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   80 (149)
T ss_dssp             HHHHHHHHHHHHHT-CGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHH-CCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCccc
Confidence            68999999999999 89999999865 67999999999999999999999999999999999999999999999999999


Q ss_pred             C-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          114 Q-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       114 ~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      . +|.+|++++.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus        81 ~~~~~~~~~~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~k~A  148 (149)
T d1fzya_          81 SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA  148 (149)
T ss_dssp             TTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCcceeechhhcccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            8 88999999999999999999999999999999999999999999999999 999999999999874

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=2.1e-45  Score=276.41  Aligned_cols=141  Identities=33%  Similarity=0.628  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116           33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV  112 (182)
Q Consensus        33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni  112 (182)
                      ..|.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||
T Consensus         3 ~~a~~~L~kE~~~l~~-~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   81 (148)
T d1yrva1           3 GRAYLLLHRDFCDLKE-NNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNV   81 (148)
T ss_dssp             CHHHHHHHHHHHHHHH-HCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTB
T ss_pred             HHHHHHHHHHHHHHHH-CCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccCce
Confidence            3588999999999999 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eC-CCcEEeecCC--CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhc
Q 030116          113 DQ-YGNICLDILQ--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLS  174 (182)
Q Consensus       113 ~~-~G~icl~~l~--~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~  174 (182)
                      +. +|+||+++|.  ++|+|+++|.+||.+|+++|.+|+.++|+|.|||++|++| ++|.++||..
T Consensus        82 ~~~~G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1          82 DPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF  147 (148)
T ss_dssp             CTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHHHHHH
T ss_pred             ecCcccccccccCchhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHhh
Confidence            96 8999999994  6899999999999999999999999999999999999999 9999999974

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=1.9e-45  Score=277.20  Aligned_cols=143  Identities=28%  Similarity=0.506  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEec-CCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           35 VTQRLQKELMSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~~~g~~~~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      |.+||++|+++|++ +++.|+.+.+. ++|+..|++.| ||++|||+||.|+|+|.||++||++||+|+|.|+||||||+
T Consensus         1 a~~Rl~kE~~~l~~-~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~   78 (150)
T d1wzva1           1 ASMRVVKELEDLQK-KPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD   78 (150)
T ss_dssp             CHHHHHHHHHHHHH-SCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             CHHHHHHHHHHHHH-CCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceEC
Confidence            47899999999999 99999998877 56899999866 89999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCC-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          114 QYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       114 ~~G~icl~~l~-~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      ++|.||+++|. ++|+|++++.+||.+|+++|.+|+.++|+|.+|+++|.+| ++|.++||+++++|.
T Consensus        79 ~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~a~~~~~kya  146 (150)
T d1wzva1          79 ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFG  146 (150)
T ss_dssp             TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCCcccccccccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            99999999994 6899999999999999999999999999999999999999 999999999999885

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=4.1e-45  Score=278.30  Aligned_cols=145  Identities=39%  Similarity=0.655  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHh------------hCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcce
Q 030116           35 VTQRLQKELMSLMM------------SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVK  102 (182)
Q Consensus        35 ~~~RL~~El~~l~~------------~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~  102 (182)
                      ..+||++|+++|++            .+...|+++.++++|+++|+++|.||.||||+||.|+|+|.||++||++||+|+
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~   81 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK   81 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEE
Confidence            46899999999966            134568999999999999999999999999999999999999999999999999


Q ss_pred             eccccCCCceeC-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          103 FETMCFHPNVDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       103 f~t~i~HPni~~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      |.|+++||||+. +|.||++++.+.|+|+++|.+||.+|+++|.+|++++|+|.+||++|.+| ++|.++||+++++|.
T Consensus        82 F~t~i~HPni~~~~G~icl~~l~~~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~~~d~~~y~~~v~~~t~~~a  160 (161)
T d2f4za1          82 FVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA  160 (161)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ecCCCCCCceECCCCCeecCcccccCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            999999999977 89999999999999999999999999999999999999999999999999 999999999998874

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=6.2e-45  Score=277.35  Aligned_cols=143  Identities=35%  Similarity=0.542  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEec-CCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeC
Q 030116           36 TQRLQKELMSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ  114 (182)
Q Consensus        36 ~~RL~~El~~l~~~~~~~g~~~~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~  114 (182)
                      ..||++|+++|++ ++++|+++.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.
T Consensus         2 ~~~L~kE~~~l~~-~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~   80 (161)
T d1pzva_           2 SLLLKKQLADMRR-VPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK   80 (161)
T ss_dssp             HHHHHHHHHHHHH-SCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCT
T ss_pred             ChHHHHHHHHHHh-CCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCC
Confidence            4699999999999 99999999986 468999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEeecCC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          115 YGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       115 ~G~icl~~l~-------------~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      +|.||+++|.             ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|+++ ++|.++|+++++++.
T Consensus        81 ~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~v~k~~  159 (161)
T d1pzva_          81 EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQ  159 (161)
T ss_dssp             TSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             CCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            9999999994             2599999999999999999999999999999999999999 999999999988763

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=1.7e-45  Score=275.79  Aligned_cols=141  Identities=28%  Similarity=0.592  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEec-CCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeC
Q 030116           36 TQRLQKELMSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ  114 (182)
Q Consensus        36 ~~RL~~El~~l~~~~~~~g~~~~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~  114 (182)
                      .|||++|+++|++ ++..|+.+.+. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.
T Consensus         1 ~rRl~kEl~~l~~-~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~   78 (144)
T d1c4zd_           1 SRRLMKELEEIRK-CGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE   78 (144)
T ss_dssp             CTTHHHHHTTCSS-SCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred             CHHHHHHHHHHHh-CCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCcc
Confidence            3899999999999 89999987775 67999999998 999999999999999999999999999999999999999999


Q ss_pred             CCcEEeecCC-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccc
Q 030116          115 YGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYY  178 (182)
Q Consensus       115 ~G~icl~~l~-~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~  178 (182)
                      +|.||+++|. +.|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++| ++|.++||+++++|
T Consensus        79 ~G~icl~~l~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~ky  144 (144)
T d1c4zd_          79 KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY  144 (144)
T ss_dssp             TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC
T ss_pred             CCccccccccCCCCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999996 5799999999999999999999999999999999999999 99999999999987

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=1e-43  Score=269.53  Aligned_cols=142  Identities=30%  Similarity=0.514  Sum_probs=131.3

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCCeEEEe-cCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCC
Q 030116           32 TTSVTQRLQKELMSLMMSGGDLGVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP  110 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP  110 (182)
                      ++.|.+||++|+++|++ .  +++.+.. .++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.+++|||
T Consensus         1 ~~~a~~Rl~kEl~~l~~-~--~~~~i~~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HP   76 (157)
T d1y8xa1           1 ASAAQLRIQKDINELNL-P--KTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHP   76 (157)
T ss_dssp             CCHHHHHHHHHHHTCCC-C--TTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBT
T ss_pred             CCHHHHHHHHHHHHhCC-C--CCCcEEEcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCc
Confidence            35799999999999965 3  3555544 468999999998 89999999999999999999999999999999999999


Q ss_pred             ceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccc
Q 030116          111 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVY  177 (182)
Q Consensus       111 ni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~  177 (182)
                      ||+.+|.||++++.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||++++-
T Consensus        77 nv~~~G~ic~~~~~~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~~~~~~~f~~~v~~~~~~  144 (157)
T d1y8xa1          77 NIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG  144 (157)
T ss_dssp             TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred             cccccceeeeeecccCCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHHHHCHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999999999 9999999998654

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=6.9e-42  Score=259.61  Aligned_cols=139  Identities=31%  Similarity=0.594  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeC-
Q 030116           36 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ-  114 (182)
Q Consensus        36 ~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~-  114 (182)
                      .|||++|+++|.+ ++.   .+.+ .||+++|++.|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+. 
T Consensus         2 ~rr~~~e~~~l~~-~~~---~~~~-~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~   76 (158)
T d1yf9a1           2 NRRREMDYMRLCN-STR---KVYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDER   76 (158)
T ss_dssp             CHHHHHHHHHHHS-SSS---CEEE-CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTT
T ss_pred             chHHHHHHHHHhc-CCC---cCCC-CCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccC
Confidence            4899999999997 443   2566 479999999999999999999999999999999999999999999999999988 


Q ss_pred             CCcEEeecCCCccCCCCCHHHHHHH-HHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116          115 YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH  179 (182)
Q Consensus       115 ~G~icl~~l~~~W~p~~~i~~vL~~-i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~  179 (182)
                      +|.||++++.++|+|.+++.++|.. |+.||.+|+.++|+|.+||++|++| ++|.++||+++++|.
T Consensus        77 ~G~vcl~il~~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~~~n~~~f~~~~k~~~~k~a  143 (158)
T d1yf9a1          77 SGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHA  143 (158)
T ss_dssp             TCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             cccccccccccccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHHC
Confidence            8999999999999999999999975 6778899999999999999999999 999999999998874

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-39  Score=235.74  Aligned_cols=110  Identities=41%  Similarity=0.722  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEe--cCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecccc--CCC
Q 030116           35 VTQRLQKELMSLMMSGGDLGVSAFP--EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC--FHP  110 (182)
Q Consensus        35 ~~~RL~~El~~l~~~~~~~g~~~~~--~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i--~HP  110 (182)
                      +.|||++|+++|++ ++++|+++.+  .++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++  |||
T Consensus         4 ~~kRL~kEl~~l~~-~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hp   82 (117)
T d2a7la1           4 MQKRLQKELLALQN-DPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHP   82 (117)
T ss_dssp             SCHHHHHHHHHHHH-SCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBT
T ss_pred             HHHHHHHHHHHHhh-CCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccc
Confidence            46999999999999 9999998875  467999999999999999999999999999999999999999999986  999


Q ss_pred             ceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhc
Q 030116          111 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLG  145 (182)
Q Consensus       111 ni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~  145 (182)
                      ||+.+|+||+++|+++|+|++||++||.+|++||.
T Consensus        83 nv~~~G~iCl~~l~~~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          83 HVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             TBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             cCcCCCeEEeecCcCCCCCcCcHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999984

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=1.2e-38  Score=227.95  Aligned_cols=107  Identities=35%  Similarity=0.563  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecccc-CCCceeCCC
Q 030116           38 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FHPNVDQYG  116 (182)
Q Consensus        38 RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPni~~~G  116 (182)
                      ||++|+++|++ +++.|+.+.+.++|+++|++.|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||+.+|
T Consensus         2 Rl~kEl~~l~~-~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~~G   80 (109)
T d2fo3a1           2 RIQKELHNFLN-NPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNG   80 (109)
T ss_dssp             HHHHHHHHHHH-SCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTS
T ss_pred             HHHHHHHHHHh-CCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECCCC
Confidence            89999999999 9999999999999999999999999999999999999999999999999999999985 899999999


Q ss_pred             cEEeecCCCccCCCCCHHHHHHHHHHhhc
Q 030116          117 NICLDILQDKWSSAYDCRTILLSIQSLLG  145 (182)
Q Consensus       117 ~icl~~l~~~W~p~~~i~~vL~~i~~ll~  145 (182)
                      +||+++|+++|+|++|+++||.+|++||.
T Consensus        81 ~iCl~il~~~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          81 DICLSLLGDDYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             BBCCGGGTTTCCTTCCHHHHHHHHHHHHC
T ss_pred             eEEeecccCCCCccCCHHHHHHHHHHHhC
Confidence            99999999999999999999999999984

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=231.45  Aligned_cols=110  Identities=37%  Similarity=0.706  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEec-CCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCC
Q 030116           37 QRLQKELMSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY  115 (182)
Q Consensus        37 ~RL~~El~~l~~~~~~~g~~~~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~  115 (182)
                      -||++|+++|++ ++++|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+
T Consensus         2 ~~L~kEl~~l~~-~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~   80 (125)
T d2awfa1           2 LLLRRQLAELNK-NPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKN   80 (125)
T ss_dssp             HHHHHHHHHHHH-SCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTT
T ss_pred             chHHHHHHHHHh-CCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCCC
Confidence            489999999999 99999999875 5689999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeecCC-------------CccCCCCCHHHHHHHHHHhhcCC
Q 030116          116 GNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEP  147 (182)
Q Consensus       116 G~icl~~l~-------------~~W~p~~~i~~vL~~i~~ll~~p  147 (182)
                      |.||+++|.             ++|+|++|+++||++|++||.+|
T Consensus        81 G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          81 GDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             CBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             CEEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence            999999983             57999999999999999999887

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=3.8e-38  Score=238.70  Aligned_cols=144  Identities=24%  Similarity=0.306  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD  113 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~  113 (182)
                      +|.|||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|+|++
T Consensus         1 tA~kRl~kE~~~l~~-~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~   79 (157)
T d2f4wa1           1 TATQRLKQDYLRIKK-DPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN   79 (157)
T ss_dssp             CHHHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTT
T ss_pred             CHHHHHHHHHHHHHh-CCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCC
Confidence            378999999999999 9999999999999999999999999999999999999999999999999999999999888876


Q ss_pred             CCCcEE-eecCCCccCCCCCHHHHHHHHHHhhcCCCCCC--cccHH-HHHHhhch-HHHHHHHhhccccc
Q 030116          114 QYGNIC-LDILQDKWSSAYDCRTILLSIQSLLGEPNPES--PLNSY-AAALLNNK-EGCIHMFSLSPVYY  178 (182)
Q Consensus       114 ~~G~ic-l~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~--p~N~~-a~~~~~~~-~~f~~~a~~~~~~~  178 (182)
                      ..|.+| +++..++|+|+++|.+||.+|++||.+|+++.  +.+.+ +.+.|.++ .+|.++++.+.++|
T Consensus        80 g~~~~~~l~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~~~~~~~~~~f~~k~~~~~~~~  149 (157)
T d2f4wa1          80 TRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELF  149 (157)
T ss_dssp             SCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCHHHHHHC
T ss_pred             CCeeeeeccccCCCCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433332 34456889999999999999999999988753  34344 44578878 99998888776654

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=100.00  E-value=7.9e-38  Score=231.51  Aligned_cols=126  Identities=25%  Similarity=0.336  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCC---CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCC
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE---SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP  110 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~---~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP  110 (182)
                      .+..||++||++++++.++.++++.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||
T Consensus         4 p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~Hp   83 (136)
T d1jatb_           4 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLP   83 (136)
T ss_dssp             CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred             chHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEecccccc
Confidence            36789999999999944566777766643   489999999999999999999999999999999999999999999999


Q ss_pred             ceeC-CCcEEeecCC-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHH
Q 030116          111 NVDQ-YGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA  159 (182)
Q Consensus       111 ni~~-~G~icl~~l~-~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~  159 (182)
                      ||+. +|.||++++. ++|+|++||.+||.+|+++|.+|+.....++++++
T Consensus        84 nV~~~~G~icl~~l~~~~Wsp~~ti~~IL~~i~~lL~~P~n~~~~q~~~g~  134 (136)
T d1jatb_          84 CVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGE  134 (136)
T ss_dssp             TBCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTC
T ss_pred             ccccCCCeEECCCCcccCcCccCcHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence            9997 7999999885 78999999999999999999999877666655543

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=224.29  Aligned_cols=122  Identities=25%  Similarity=0.385  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEec----CCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCC
Q 030116           34 SVTQRLQKELMSLMMSGGDLGVSAFPE----GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH  109 (182)
Q Consensus        34 ~~~~RL~~El~~l~~~~~~~g~~~~~~----~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H  109 (182)
                      .+.+||++||+++++ ++++|+...+.    ++|+++|+++|.||.+|||+||.|+++|.||++||++||+|+|.|+++|
T Consensus         5 ~r~~RL~kEl~~l~k-~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~H   83 (139)
T d2a4da1           5 PRNFRLLEELEEGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM   83 (139)
T ss_dssp             HHHHHHHHHHHHHHS-CCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             chhHHHHHHHHHHhh-CCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            578999999999999 88877666554    3379999999999999999999999999999999999999999999999


Q ss_pred             CceeC-CCcEEeecCC--CccCCCCCHHHHHHHHHHhhcCC-CCCCcccHH
Q 030116          110 PNVDQ-YGNICLDILQ--DKWSSAYDCRTILLSIQSLLGEP-NPESPLNSY  156 (182)
Q Consensus       110 Pni~~-~G~icl~~l~--~~W~p~~~i~~vL~~i~~ll~~p-~~~~p~N~~  156 (182)
                      |||+. +|.+|+..+.  ++|+|++||++||.+|+++|.+| |.++|.|+|
T Consensus        84 pnV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL~~peN~~~p~~~e  134 (139)
T d2a4da1          84 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPE  134 (139)
T ss_dssp             TTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCT
T ss_pred             ccCcCCCCEEcceecCcccCCCccCcHHHHHHHHHHHHCCCCCCCCCCCCC
Confidence            99998 6777766653  58999999999999999999987 678898887

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-37  Score=237.47  Aligned_cols=141  Identities=21%  Similarity=0.373  Sum_probs=122.9

Q ss_pred             cHHHHHHHHHHHHHHHhhCCC--CC-eEEEecCCCCceEEEEEEc-CCCCCCCCCE-----------EEEEEEeCCCCCC
Q 030116           32 TTSVTQRLQKELMSLMMSGGD--LG-VSAFPEGESIFTWIGTIEG-GKGTMYEGLS-----------YKLSLRFPLDYPF   96 (182)
Q Consensus        32 ~~~~~~RL~~El~~l~~~~~~--~g-~~~~~~~~~~~~w~~~i~G-p~~tpy~gg~-----------f~~~i~fp~~YP~   96 (182)
                      +..|.+||++||++|++ ++.  .| +.+.++++|+++|++.|.| |++|||+||.           |+++|.||++||+
T Consensus         2 s~~a~~RL~kEl~~l~k-~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~   80 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYR-SQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF   80 (162)
T ss_dssp             CHHHHHHHHHHHHHHHT-SHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred             cHHHHHHHHHHHHHHHh-CCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhh
Confidence            56799999999999988 543  34 4677888999999999999 8999999986           9999999999999


Q ss_pred             CCCcceeccccCCCc-eeCCCcEEeecC-CCccCCCCCHHHHHHHHHHhhcCCCC--CCcccHHHHHHhhch-HHHHHHH
Q 030116           97 KPPQVKFETMCFHPN-VDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNP--ESPLNSYAAALLNNK-EGCIHMF  171 (182)
Q Consensus        97 ~pP~v~f~t~i~HPn-i~~~G~icl~~l-~~~W~p~~~i~~vL~~i~~ll~~p~~--~~p~N~~a~~~~~~~-~~f~~~a  171 (182)
                      +||+|+|+++++||| ++.+|.||+++| .++|+|++||++||.+|+++|.+|++  +.+.|.+++.+. ++ ++|++.|
T Consensus        81 ~PP~v~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y~~~-~~~~~y~~~~  159 (162)
T d1zuoa1          81 DPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLA-RAQQSYNSIV  159 (162)
T ss_dssp             SCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCCCHH-HHHHHHHHHH
T ss_pred             hcceEEEEEEeeccccccCCceeecccccCCCCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHHHHH-HhHHHHHHHH
Confidence            999999999999998 566999999999 46799999999999999999987665  566777776654 45 8899999


Q ss_pred             hhc
Q 030116          172 SLS  174 (182)
Q Consensus       172 ~~~  174 (182)
                      |.+
T Consensus       160 ~~~  162 (162)
T d1zuoa1         160 QIH  162 (162)
T ss_dssp             HHC
T ss_pred             hhC
Confidence            864

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.6e-21  Score=142.25  Aligned_cols=109  Identities=17%  Similarity=0.237  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHhhCC--CCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEE--EEEeCCCCCCCCCcceeccc-----cC
Q 030116           38 RLQKELMSLMMSGG--DLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKL--SLRFPLDYPFKPPQVKFETM-----CF  108 (182)
Q Consensus        38 RL~~El~~l~~~~~--~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~-----i~  108 (182)
                      +..+|+.++.+.-+  .++..+...+|+...|.+.|.|+.+++|+||.|.+  .|.||.+||++||.|.|.+.     ++
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~   97 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKT   97 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECC
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccC
Confidence            45567777766222  35666777888999999999999999999999998  56689999999999988753     78


Q ss_pred             CCceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcC
Q 030116          109 HPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGE  146 (182)
Q Consensus       109 HPni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~  146 (182)
                      ||||+.+|+||+++|.+-|.+..++.++|..|+++|.+
T Consensus        98 h~~V~~~G~V~lp~L~~W~~~~s~L~~ll~~L~~~f~~  135 (141)
T d1s1qa_          98 GKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGD  135 (141)
T ss_dssp             SSSBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCeECCCCCCcchhhcCCCcccccHHHHHHHHHHHhCC
Confidence            99999999999999964445677999999999999985

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=9.6e-19  Score=130.57  Aligned_cols=114  Identities=22%  Similarity=0.254  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHhhCCC--CCeEEEecCCCCceEEEEEEcCCCCCCCCCE---EEEEEEeCCCCCCCCCcceeccc----
Q 030116           36 TQRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLS---YKLSLRFPLDYPFKPPQVKFETM----  106 (182)
Q Consensus        36 ~~RL~~El~~l~~~~~~--~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~----  106 (182)
                      .+|+.+|...+.+.-+.  +...+...+|....+.+.|.|.-..+|+||.   |.+.|.||++||+.||.++|.++    
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~  100 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM  100 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCS
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccc
Confidence            35778888887762222  2444555567777888999998889999996   78889999999999999999865    


Q ss_pred             -------cCCCceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCC
Q 030116          107 -------CFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNP  149 (182)
Q Consensus       107 -------i~HPni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~  149 (182)
                             ++|||||.+|+||+++|.+-|.++.++.++|..|+.+|.++..
T Consensus       101 ~~~~~~i~~hp~Vd~~G~V~lp~L~~W~~~~s~L~~ll~~l~~~f~~~P~  150 (152)
T d1uzxa_         101 NTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQ  150 (152)
T ss_dssp             CC----CGGGGGBCTTSCBCCHHHHSCCTTTCCHHHHHHHHHTGGGSCCC
T ss_pred             cCCCcccccCCCCCCCCcEehHHhcCCCCccCcHHHHHHHHHHHhcCCCC
Confidence                   5799999999999999976667899999999999999987743

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.5e-06  Score=60.66  Aligned_cols=103  Identities=18%  Similarity=0.316  Sum_probs=60.8

Q ss_pred             CCcHHHHHHHHHHHHHHHhh------CCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCE--EEEEEEeCCCCCCCCCcc
Q 030116           30 VDTTSVTQRLQKELMSLMMS------GGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLS--YKLSLRFPLDYPFKPPQV  101 (182)
Q Consensus        30 ~~~~~~~~RL~~El~~l~~~------~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~--f~~~i~fp~~YP~~pP~v  101 (182)
                      -+.....+||+.||..|-+.      .....+.+.. +.+=..|.+.---    .+.--.  |.+++++|..||..||.|
T Consensus        21 rD~e~W~~RLKEEy~aLI~Yv~nNK~~dndWF~les-n~~GT~W~GkCWy----ihnl~kYeFd~eFdIP~tYP~t~pEi   95 (162)
T d2in1a1          21 RDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWY----IHDLLKYEFDIEFDIPITYPTTAPEI   95 (162)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-CTTSSEEEEEEEE----EETTEEEEEEEEEECCTTTTTSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCeeeceeeE----EEeeeEEEEEEEeccCCCCCCCCcce
Confidence            34456999999999988661      1223344442 2233344333220    111223  445566699999999999


Q ss_pred             eecccc-CCCceeCCCcEEeecCC-Ccc---CCCCCHHHHH
Q 030116          102 KFETMC-FHPNVDQYGNICLDILQ-DKW---SSAYDCRTIL  137 (182)
Q Consensus       102 ~f~t~i-~HPni~~~G~icl~~l~-~~W---~p~~~i~~vL  137 (182)
                      ..-.-- -..-.+..|+|||+.-. .-|   .|.++|...|
T Consensus        96 ~lPeLdGKTaKMYRGGkIClt~HFkPLWarN~PkfGIaHal  136 (162)
T d2in1a1          96 AVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM  136 (162)
T ss_dssp             BCGGGSSSCSSSCGGGBCCCCTTSHHHHHTTTTSCCHHHHH
T ss_pred             eccccCCchhhhhcCceeeccccchhhhhhcCCchhHHHHH
Confidence            765311 11133458999998763 446   5777887664

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.019  Score=38.36  Aligned_cols=68  Identities=18%  Similarity=0.165  Sum_probs=43.1

Q ss_pred             HHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCC----CCCCCCCEEEEEEEeCCCCCCCCCcceecccc
Q 030116           39 LQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGK----GTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC  107 (182)
Q Consensus        39 L~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~----~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i  107 (182)
                      +..|+.-|+. -=+..+.+....++...+.+.|.-.+    +..-......+.+.||.+||..+|.+.+....
T Consensus         6 ~~~EleaL~S-IY~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~~   77 (115)
T d2daya1           6 LPSEVEVLES-IYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPR   77 (115)
T ss_dssp             HHHHHHHHHH-HSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEE
T ss_pred             HHHHHHHHHh-HCCCceEEeccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeeccC
Confidence            5678888876 54556655544444455545543211    11112356889999999999999999876543

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.74  E-value=0.23  Score=33.75  Aligned_cols=76  Identities=14%  Similarity=0.063  Sum_probs=44.1

Q ss_pred             CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCC-----CCceEEEEEEcCC-CCCCCCCEEEEEEEeCCCCCCCCCcceec
Q 030116           31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGE-----SIFTWIGTIEGGK-GTMYEGLSYKLSLRFPLDYPFKPPQVKFE  104 (182)
Q Consensus        31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~-----~~~~w~~~i~Gp~-~tpy~gg~f~~~i~fp~~YP~~pP~v~f~  104 (182)
                      ..+.-..+-..|+.-|.. --+..+.......     ......+.|.... +.......+.+.|.||.+||..+|.+.+.
T Consensus         7 ~~~~~~E~Q~~EleaL~S-IY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~   85 (137)
T d1ukxa_           7 GMESYSQRQDHELQALEA-IYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK   85 (137)
T ss_dssp             CCCCHHHHHHHHHHHHHH-HTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred             CcccHHHHHHHHHHHHHH-HcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEe
Confidence            333445566788888876 3333343322111     1113344444211 22333457899999999999999999876


Q ss_pred             ccc
Q 030116          105 TMC  107 (182)
Q Consensus       105 t~i  107 (182)
                      ...
T Consensus        86 ~~~   88 (137)
T d1ukxa_          86 NAK   88 (137)
T ss_dssp             EEE
T ss_pred             cCC
Confidence            543

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.46  Score=32.11  Aligned_cols=67  Identities=15%  Similarity=0.176  Sum_probs=42.4

Q ss_pred             CEEEEEEEeCCCCCCCCCcceeccccCCCceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHh
Q 030116           82 LSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL  161 (182)
Q Consensus        82 g~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~  161 (182)
                      -.+.+.+.+|.+||..+|.|...+                    .|-+......++..|...+.+-....|+=-+.....
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~--------------------~~l~~~~~~~l~~~l~~~~~e~~~Ge~mif~lv~~l  127 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRS--------------------SELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWL  127 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEEC--------------------SSSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHH
T ss_pred             ceEEEEEEeCCCCCCCCCCceeec--------------------cccCHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            357888999999999999886542                    133334466677777777755334455434555555


Q ss_pred             hch-HHHH
Q 030116          162 NNK-EGCI  168 (182)
Q Consensus       162 ~~~-~~f~  168 (182)
                      +++ ..|.
T Consensus       128 qe~~~~~l  135 (141)
T d2dawa1         128 QDNSASYF  135 (141)
T ss_dssp             HHTTHHHH
T ss_pred             HHHHHHHH
Confidence            555 4443

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.06  E-value=0.37  Score=32.45  Aligned_cols=24  Identities=21%  Similarity=0.480  Sum_probs=20.5

Q ss_pred             CCEEEEEEEeCCCCCCCCCcceec
Q 030116           81 GLSYKLSLRFPLDYPFKPPQVKFE  104 (182)
Q Consensus        81 gg~f~~~i~fp~~YP~~pP~v~f~  104 (182)
                      .....+.+.+|.+||..+|.|...
T Consensus        65 ~~~l~L~~~lP~~YP~~~P~i~l~   88 (140)
T d2daxa1          65 MAMFSLACILPFKYPAVLPEITVR   88 (140)
T ss_dssp             EEEEEEEEEECSSTTSSCCCCEEE
T ss_pred             CceEEEEEEecCcCCCcCCceecc
Confidence            456889999999999999998654