Citrus Sinensis ID: 030130

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKPDMDFGDLDFSKMNMGGLDAEAAGGDENDESDTEEENEVGTTPAGNREAPPPSTSSEPDTKTA
Secondary Structure (PSIPRED)
ccccccEEEEEEccEEEEEEEEcccccccEEEEEccEEEEEEEcccccccEEEEEEccccccccccEEEEcccEEEEEEEEcccccccccccccccccccEEEcccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccEEEEEEEEccccccEEEEccccEEEEEEEccccccEEEEEEEEccccccccccccccccEEEEEEEEccccccHHHHccccccccEEEEcccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msrhptvkwaqrtdrvyitidlpdaqdvklklepegkfffsatsgpdkipyevdidlydkvdvneskasvglrNIHYLVKKAENKWWSRLLkqagkppvflkvdwdkwidedeegkddkpdmdfgdldfskmnmggldaeaaggdendesdteeenevgttpagnreapppstssepdtkta
Flexible Loop (DISEMBL)
msrhptvkwaqrtdrvyitiDLPDAQDVKLKLEPEGKFffsatsgpdkipyEVDIDLYDKVDVNEskasvglrnihylVKKAENKWWSRLLkqagkppvflkvDWDKWIDedeegkddkpdmdFGDLDFSKMNMGGLDAEAAGGDENDESDteeenevgttpagnreapppstssepdtkta
Low Complexity Region (SEG)
MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVdwdkwidedeegkddkpdmdFGDLDFSKMNMggldaeaaggdendesdteeeneVGTTPAGNREAPPPSTSSEPDTKTA
Disordered region (IsUnstruct)
*******KWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWID************************************************************************
Disordered Region (DISOPRED)
*SRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDE*********************************************************************
Disordered Region (DISEMBL)
********WAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKPDMDFGDLDFSKMNMGGLDAE******************************************
Disordered Region (DISPRO)
***HPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWID***************DLD******************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKPDMDFGDLDFSKMNMGGLDAEAAGGDENDESDTEEENEVGTTPAGNREAPPPSTSSEPDTKTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
Q6YYB0	213	Uncharacterized protein O	no	no	0.697	0.596	0.585	2e-37
P0C8Z0	210	Uncharacterized protein O	N/A	no	0.697	0.604	0.585	3e-37
Q6ID70	150	Uncharacterized protein A	no	no	0.615	0.746	0.517	1e-28
Q11118	186	Protein wos2 OS=Schizosac	yes	no	0.780	0.763	0.343	7e-15
Q23280	175	Uncharacterized protein Z	yes	no	0.560	0.582	0.387	2e-10
Q5NVM4	160	Prostaglandin E synthase	yes	no	0.686	0.781	0.335	7e-10
Q6PWL5	160	Prostaglandin E synthase	N/A	no	0.686	0.781	0.335	7e-10
Q15185	160	Prostaglandin E synthase	yes	no	0.686	0.781	0.335	7e-10
Q3ZBF7	160	Prostaglandin E synthase	yes	no	0.686	0.781	0.335	7e-10
P83868	160	Prostaglandin E synthase	yes	no	0.686	0.781	0.328	3e-09

>sp|Q6YYB0|Y8359_ORYSJ Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1

 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 95/128 (74%), Gaps = 1/128 (0%)

Query: 1   MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
           MSRHP VKWAQR D+VYIT+ L DA+D K+ LEPEG F FSAT+G D   YE  ++L DK
Sbjct: 1   MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDK 60

Query: 61  VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKP 120
           V+V ESK SVG+R+I  +V+KAE KWW +L++   K P F+KVDWDKW+DED++G D   
Sbjct: 61  VNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKVDWDKWVDEDDDGADVNV 120

Query: 121 D-MDFGDL 127
           D MDF + 
Sbjct: 121 DGMDFSNF 128

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C8Z0|Y8359_ORYSI Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2

 Score =  154 bits (390), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 95/128 (74%), Gaps = 1/128 (0%)

Query: 1   MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
           MSRHP VKWAQR D+VYIT+ L DA+D K+ LEPEG F FSAT+G D   YE  ++L DK
Sbjct: 1   MSRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDK 60

Query: 61  VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKP 120
           V+V ESK SVG+R+I  +V+KAE KWW +L++   K P F+KVDWDKW+DED++G D   
Sbjct: 61  VNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKVDWDKWVDEDDDGADVNV 120

Query: 121 D-MDFGDL 127
           D MDF + 
Sbjct: 121 DGMDFSNF 128

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q6ID70|Y3377_ARATH Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 82/114 (71%), Gaps = 2/114 (1%)

Query: 1   MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
           MSR+P V WAQR+D+VY+T+ LPDA+D+ +K EP+G F FSA  G     +E  ++LY K
Sbjct: 1   MSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSAL-GAQGERFEFSLELYGK 59

Query: 61  VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEE 114
           + + E + +VGLRNI + ++K E  WW+RLLK   KP  ++KVDW+KW DEDEE
Sbjct: 60  I-MTEYRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDEE 112

Arabidopsis thaliana (taxid: 3702)

>sp|Q11118|WOS2_SCHPO Protein wos2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wos2 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 27/169 (15%)

Query: 2   SRHPTVKWAQRTDR-------VYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVD 54
           ++ P V WAQR+++       +Y+T+ +PDA D K+ L PE K    + SG +   Y V 
Sbjct: 5   TQIPEVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPE-KLVIDSKSGANA-HYAVQ 62

Query: 55  IDLYDKVDVNESKASVGLRNIHYLVKKAE--NKWWSRLLKQAGKPPVFLKVDWDKWIDED 112
           ID +  +DV +SK SV  R I +++ K E   ++W RL K+  +   +L+ D+D+W+DED
Sbjct: 63  IDFFKDIDVEKSKYSVTGRYIFFVLYKKELQEEFWPRLTKEKLRLH-WLRTDFDRWVDED 121

Query: 113 EE---------GKDDKPDMD----FGDLDFSKMNMGGLDAEAAGGDEND 148
           E+         G    PD+      G +DFS+   G L    AG D +D
Sbjct: 122 EQEAQPEVSPFGAGGMPDLSALGGMGGMDFSQ--FGNLGGAGAGEDASD 168

Cell cycle regulatory protein that interacts with cdc2 in the control of the M-G1 transition.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q23280|YOCA_CAEEL Uncharacterized protein ZC395.10 OS=Caenorhabditis elegans GN=ZC395.10 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 9/111 (8%)

Query: 1   MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
           M++ PTV WAQR   VY+TI++ +A+  +LK E   K  F  +S  DK  YE  ++ +D+
Sbjct: 1   MAKQPTVLWAQRESLVYLTIEVDEAKIEELKGEG-NKLHFQGSSKTDK--YEATLEFFDE 57

Query: 61  VD---VNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKW 108
           +D   V  + +S   R +   V+K    WW RLL+  GK   +LKVD+ KW
Sbjct: 58  IDPASVKHTGSST--RVVEITVQKKTPAWWPRLLQNKGKVH-WLKVDFGKW 105

Caenorhabditis elegans (taxid: 6239)

>sp|Q5NVM4|TEBP_PONAB Prostaglandin E synthase 3 OS=Pongo abelii GN=PTGES3 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 9/134 (6%)

Query: 6   TVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNE 65
           + KW  R D V+I   + D++DV +  E + K  FS   G D   +  +IDL+  +D N+
Sbjct: 5   SAKWYDRRDYVFIEFCVEDSKDVNVNFE-KSKLTFSCLGGSDNFKHLNEIDLFHCIDPND 63

Query: 66  SKASVGLRNIHYLVKKAEN-KWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKPDMDF 124
           SK     R+I   ++K E+ + W RL K+  K   +L VD++ W D +++  +D  + D 
Sbjct: 64  SKHKRTDRSILCCLRKGESGQSWPRLTKERAKLN-WLSVDFNNWKDWEDDSDEDMSNFD- 121

Query: 125 GDLDFSKM--NMGG 136
               FS+M  NMGG
Sbjct: 122 ---RFSEMMNNMGG 132

Molecular chaperone that localizes to genomic response elements in a hormone-dependent manner and disrupts receptor-mediated transcriptional activation, by promoting disassembly of transcriptional regulatory complexes.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q6PWL5|TEBP_MACFA Prostaglandin E synthase 3 OS=Macaca fascicularis GN=PTGES3 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 9/134 (6%)

Query: 6   TVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNE 65
           + KW  R D V+I   + D++DV +  E + K  FS   G D   +  +IDL+  +D N+
Sbjct: 5   SAKWYDRRDYVFIEFCVEDSKDVNVNFE-KSKLTFSCLGGSDNFKHLNEIDLFHCIDPND 63

Query: 66  SKASVGLRNIHYLVKKAEN-KWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKPDMDF 124
           SK     R+I   ++K E+ + W RL K+  K   +L VD++ W D +++  +D  + D 
Sbjct: 64  SKHKRTDRSILCCLRKGESGQSWPRLTKERAKLN-WLSVDFNNWKDWEDDSDEDMSNFD- 121

Query: 125 GDLDFSKM--NMGG 136
               FS+M  NMGG
Sbjct: 122 ---RFSEMMNNMGG 132

Molecular chaperone that localizes to genomic response elements in a hormone-dependent manner and disrupts receptor-mediated transcriptional activation, by promoting disassembly of transcriptional regulatory complexes.

Macaca fascicularis (taxid: 9541)

EC: 5

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q15185|TEBP_HUMAN Prostaglandin E synthase 3 OS=Homo sapiens GN=PTGES3 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 9/134 (6%)

Query: 6   TVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNE 65
           + KW  R D V+I   + D++DV +  E + K  FS   G D   +  +IDL+  +D N+
Sbjct: 5   SAKWYDRRDYVFIEFCVEDSKDVNVNFE-KSKLTFSCLGGSDNFKHLNEIDLFHCIDPND 63

Query: 66  SKASVGLRNIHYLVKKAEN-KWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKPDMDF 124
           SK     R+I   ++K E+ + W RL K+  K   +L VD++ W D +++  +D  + D 
Sbjct: 64  SKHKRTDRSILCCLRKGESGQSWPRLTKERAKLN-WLSVDFNNWKDWEDDSDEDMSNFD- 121

Query: 125 GDLDFSKM--NMGG 136
               FS+M  NMGG
Sbjct: 122 ---RFSEMMNNMGG 132

Molecular chaperone that localizes to genomic response elements in a hormone-dependent manner and disrupts receptor-mediated transcriptional activation, by promoting disassembly of transcriptional regulatory complexes.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q3ZBF7|TEBP_BOVIN Prostaglandin E synthase 3 OS=Bos taurus GN=PTGES3 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 9/134 (6%)

Query: 6   TVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNE 65
           + KW  R D V+I   + D++DV +  E + K  FS   G D   +  +IDL+  +D N+
Sbjct: 5   SAKWYDRRDYVFIEFCVEDSKDVNVNFE-KSKLTFSCLGGSDNFKHLNEIDLFHCIDPND 63

Query: 66  SKASVGLRNIHYLVKKAEN-KWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKPDMDF 124
           SK     R+I   ++K E+ + W RL K+  K   +L VD++ W D +++  +D  + D 
Sbjct: 64  SKHKRTDRSILCCLRKGESGQSWPRLTKERAKLN-WLSVDFNNWKDWEDDSDEDMSNFD- 121

Query: 125 GDLDFSKM--NMGG 136
               FS+M  NMGG
Sbjct: 122 ---RFSEMMNNMGG 132

Molecular chaperone that localizes to genomic response elements in a hormone-dependent manner and disrupts receptor-mediated transcriptional activation, by promoting disassembly of transcriptional regulatory complexes.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P83868|TEBP_RAT Prostaglandin E synthase 3 OS=Rattus norvegicus GN=Ptges3 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 9/134 (6%)

Query: 6   TVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNE 65
           + KW  R D V+I   + D++DV +  E + K  FS   G D   +  +IDL+  +D N+
Sbjct: 5   SAKWYDRRDYVFIEFCVEDSKDVNVNFE-KSKLTFSCLGGSDNFKHLNEIDLFHCIDPND 63

Query: 66  SKASVGLRNIHYLVKKAEN-KWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKPDMDF 124
           SK     R+I   ++K E+ + W RL K+  K   +L VD++ W D +++  +D  + D 
Sbjct: 64  SKHKRTDRSILCCLRKGESGQSWPRLTKERAKLN-WLSVDFNNWKDWEDDSDEDMSNFD- 121

Query: 125 GDLDFSKM--NMGG 136
               FS+M  +MGG
Sbjct: 122 ---RFSEMMDHMGG 132

Molecular chaperone that localizes to genomic response elements in a hormone-dependent manner and disrupts receptor-mediated transcriptional activation, by promoting disassembly of transcriptional regulatory complexes.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
351724803	189	uncharacterized protein LOC100527783 [Gl	0.983	0.947	0.685	1e-64
356502325	908	PREDICTED: uncharacterized protein LOC10	0.780	0.156	0.765	5e-60
297739351	218	unnamed protein product [Vitis vinifera]	0.835	0.697	0.786	3e-59
225463121	178	PREDICTED: uncharacterized protein OsI_0	0.747	0.764	0.841	2e-58
449494197	191	PREDICTED: uncharacterized protein OsI_0	0.994	0.947	0.633	8e-58
449446367	191	PREDICTED: uncharacterized protein OsI_0	0.994	0.947	0.633	2e-57
297851728	180	hypothetical protein ARALYDRAFT_336372 [	0.829	0.838	0.716	8e-57
350539529	179	ripening regulated protein DDTFR8 [Solan	0.741	0.754	0.711	1e-52
11934654	178	p23 [Brassica napus]	0.758	0.775	0.724	4e-52
357497475	190	Ripening regulated protein DDTFR8 [Medic	0.785	0.752	0.664	6e-50

>gi|351724803|ref|NP_001237326.1| uncharacterized protein LOC100527783 [Glycine max] gi|255633200|gb|ACU16956.1| unknown [Glycine max]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/191 (68%), Positives = 153/191 (80%), Gaps = 12/191 (6%)

Query: 1   MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
           MSRHP+VKWAQ +D +Y+T++LPDAQDVKLKLEPEGKF+FSAT+G +KIPYEVDIDL+DK
Sbjct: 1   MSRHPSVKWAQTSDVLYLTVELPDAQDVKLKLEPEGKFYFSATAGAEKIPYEVDIDLFDK 60

Query: 61  VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKP 120
           +DVN SKASVG RNI YLVKKAENKWW RLLKQ GK PVFLKVDWDKW+DEDEE +D+KP
Sbjct: 61  IDVNNSKASVGSRNICYLVKKAENKWWDRLLKQGGKSPVFLKVDWDKWVDEDEE-QDNKP 119

Query: 121 ---DMDFGDLDFSKMNMG---GLDAEAAGGDENDESDTEEENEVGTTPAGNREAPPPSTS 174
              DMDFGD+DFSK+ MG   GLD++AAG D+ DESDTEEE  V    A   +    + S
Sbjct: 120 AASDMDFGDIDFSKLGMGGGEGLDSDAAGNDDADESDTEEEF-VAEASASKEQDTKGAVS 178

Query: 175 SE----PDTKT 181
           S+    PDTK 
Sbjct: 179 SDAKDAPDTKA 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502325|ref|XP_003519970.1| PREDICTED: uncharacterized protein LOC100798465 [Glycine max]

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 114/149 (76%), Positives = 132/149 (88%), Gaps = 7/149 (4%)

Query: 1   MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
           MSRHP+VKWAQ +D +Y+T++LPDAQDVKLKLEPEGKF+FSAT+G +KIPYEVDIDL+DK
Sbjct: 1   MSRHPSVKWAQTSDVLYLTVELPDAQDVKLKLEPEGKFYFSATAGAEKIPYEVDIDLFDK 60

Query: 61  VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKP 120
           +DVN SKASVG R+I YLVKKAENKWW RLLKQ GK PVFLKVDWDKW+DEDEE +D+KP
Sbjct: 61  IDVNNSKASVGSRHICYLVKKAENKWWDRLLKQGGKSPVFLKVDWDKWVDEDEE-QDNKP 119

Query: 121 ---DMDFGDLDFSKMNMG---GLDAEAAG 143
              DMDFGD+DFSKM+MG   GLD +AAG
Sbjct: 120 AASDMDFGDIDFSKMSMGGGEGLDFDAAG 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739351|emb|CBI29341.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 136/159 (85%), Gaps = 7/159 (4%)

Query: 1   MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
           MSRHPTVKWAQR+D +YITIDLPDA+DV LKLEPEGKFFFSATSG DKIPYE+DIDL+DK
Sbjct: 41  MSRHPTVKWAQRSDTIYITIDLPDAKDVNLKLEPEGKFFFSATSGADKIPYEIDIDLFDK 100

Query: 61  VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDK- 119
           VDVNESKAS+GLRNI YLVKKAENKWWSRLLKQ GKPPVFLKVDWDKW+DEDEE +D   
Sbjct: 101 VDVNESKASIGLRNIRYLVKKAENKWWSRLLKQEGKPPVFLKVDWDKWVDEDEEPEDKDK 160

Query: 120 --PDMDFGDLDFSKMNMGG----LDAEAAGGDENDESDT 152
              DMDFGD DFSK+NMGG     D  A   +END+SDT
Sbjct: 161 LGADMDFGDFDFSKLNMGGGEDLDDDAADKDEENDDSDT 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463121|ref|XP_002265220.1| PREDICTED: uncharacterized protein OsI_027940-like [Vitis vinifera]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/139 (84%), Positives = 126/139 (90%), Gaps = 3/139 (2%)

Query: 1   MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
           MSRHPTVKWAQR+D +YITIDLPDA+DV LKLEPEGKFFFSATSG DKIPYE+DIDL+DK
Sbjct: 1   MSRHPTVKWAQRSDTIYITIDLPDAKDVNLKLEPEGKFFFSATSGADKIPYEIDIDLFDK 60

Query: 61  VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDK- 119
           VDVNESKAS+GLRNI YLVKKAENKWWSRLLKQ GKPPVFLKVDWDKW+DEDEE +D   
Sbjct: 61  VDVNESKASIGLRNIRYLVKKAENKWWSRLLKQEGKPPVFLKVDWDKWVDEDEEPEDKDK 120

Query: 120 --PDMDFGDLDFSKMNMGG 136
              DMDFGD DFSK+NMGG
Sbjct: 121 LGADMDFGDFDFSKLNMGG 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494197|ref|XP_004159475.1| PREDICTED: uncharacterized protein OsI_027940-like [Cucumis sativus]

 Score =  228 bits (581), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 121/191 (63%), Positives = 145/191 (75%), Gaps = 10/191 (5%)

Query: 1   MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
           MSRHPT++WAQ +DR++ITIDLPDAQDVKLKL+PEGKF FSA SG +KIPYEVDIDLYDK
Sbjct: 1   MSRHPTLRWAQTSDRLFITIDLPDAQDVKLKLDPEGKFCFSAVSGTEKIPYEVDIDLYDK 60

Query: 61  VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEE-GKDDK 119
           VD+NESKAS+G+RNI YL++KAE KWWSRLLKQ GKPPVF+K+DWDKWIDEDEE G +  
Sbjct: 61  VDINESKASIGMRNIRYLIEKAEKKWWSRLLKQEGKPPVFVKIDWDKWIDEDEEKGDNSG 120

Query: 120 PDMDFGDLDFSKMNM---GGLDAEAAG------GDENDESDTEEENEVGTTPAGNREAPP 170
            DMDF  LDFSK+ +   GG+ A+A G       D +DE + +E  +V  TP        
Sbjct: 121 NDMDFSSLDFSKLGLDPGGGMGADAFGEDDEDDNDIDDEGENKEGEKVDQTPLAGPINES 180

Query: 171 PSTSSEPDTKT 181
            S+S EPD K 
Sbjct: 181 GSSSKEPDAKA 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446367|ref|XP_004140943.1| PREDICTED: uncharacterized protein OsI_027940-like [Cucumis sativus]

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 121/191 (63%), Positives = 145/191 (75%), Gaps = 10/191 (5%)

Query: 1   MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
           MSRHPT++WAQ +DR++ITIDLPDAQDVKLKL+PEGKF FSA SG +KIPYEVDIDLYDK
Sbjct: 1   MSRHPTLRWAQTSDRLFITIDLPDAQDVKLKLDPEGKFCFSAVSGTEKIPYEVDIDLYDK 60

Query: 61  VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEE-GKDDK 119
           VD+NESKAS+G+RNI YL++KAE KWWSRLLKQ GKPPVF+K+DWDKWIDEDEE G +  
Sbjct: 61  VDINESKASIGMRNILYLIEKAEKKWWSRLLKQEGKPPVFVKIDWDKWIDEDEEKGDNSG 120

Query: 120 PDMDFGDLDFSKMNM---GGLDAEAAG------GDENDESDTEEENEVGTTPAGNREAPP 170
            DMDF  LDFSK+ +   GG+ A+A G       D +DE + +E  +V  TP        
Sbjct: 121 NDMDFSSLDFSKLGLDPGGGMGADAFGEDDEDDNDIDDEGENKEGEKVDQTPLAGPINES 180

Query: 171 PSTSSEPDTKT 181
            S+S EPD K 
Sbjct: 181 GSSSKEPDAKA 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851728|ref|XP_002893745.1| hypothetical protein ARALYDRAFT_336372 [Arabidopsis lyrata subsp. lyrata] gi|297339587|gb|EFH70004.1| hypothetical protein ARALYDRAFT_336372 [Arabidopsis lyrata subsp. lyrata]

 Score =  224 bits (572), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 111/155 (71%), Positives = 128/155 (82%), Gaps = 4/155 (2%)

Query: 1   MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
           MS+HPTVKWAQR+D+VYIT++LPDA+DVKLKLEP+GKFFFSATSG  K PYEVD+DL+D 
Sbjct: 1   MSKHPTVKWAQRSDKVYITVELPDAEDVKLKLEPQGKFFFSATSGASKTPYEVDLDLFDN 60

Query: 61  VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKP 120
           VDVNESKASV  R I Y+VKKAE+KWW+RL+KQ GKPPVFLKVDWDKW+DEDE+ K    
Sbjct: 61  VDVNESKASVNSRCICYMVKKAESKWWNRLIKQEGKPPVFLKVDWDKWVDEDED-KGGGA 119

Query: 121 DMDFGDLDFSKMNMGGLDAEAAGGDENDESDTEEE 155
           DMDFGD DF+ +NMG  D     GDE   SD EEE
Sbjct: 120 DMDFGDFDFNSLNMGDTDGI---GDEEGGSDMEEE 151

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539529|ref|NP_001234685.1| ripening regulated protein DDTFR8 [Solanum lycopersicum] gi|12231292|gb|AAG49030.1|AF204783_1 ripening regulated protein DDTFR8 [Solanum lycopersicum]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 120/135 (88%)

Query: 1   MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
           MSRHPT+KWAQ +D+++IT++LPDA++VKLKLEPEGKF FSAT+G D +PYEVD+DL+DK
Sbjct: 1   MSRHPTIKWAQMSDKLFITVELPDAKNVKLKLEPEGKFLFSATAGADNVPYEVDLDLFDK 60

Query: 61  VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKP 120
           ++V+ESK+S   R+I YLVKKAE+KWWSRL+KQ G  PVFLKVDWDKW+DEDEE    +P
Sbjct: 61  INVDESKSSTTSRSIVYLVKKAEDKWWSRLVKQEGLRPVFLKVDWDKWVDEDEEDSKPEP 120

Query: 121 DMDFGDLDFSKMNMG 135
           DMDFGD+DFSK+NMG
Sbjct: 121 DMDFGDMDFSKLNMG 135

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11934654|gb|AAG41763.1|AF153128_1 p23 [Brassica napus]

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 100/138 (72%), Positives = 116/138 (84%)

Query: 1   MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
           MSRHPTVKWAQR+D VYIT++LPDA+DVKLKLEPEGKFFFSATSG  K  YEVD+DL D 
Sbjct: 1   MSRHPTVKWAQRSDWVYITVELPDAEDVKLKLEPEGKFFFSATSGASKTLYEVDLDLLDS 60

Query: 61  VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKP 120
           VDVNESKASV  R++ YLVKKAE+KWW+RL K  GK P++LKVDWDKW+DED+E K  + 
Sbjct: 61  VDVNESKASVSSRSVFYLVKKAESKWWNRLTKPEGKHPLYLKVDWDKWVDEDDEDKGGEG 120

Query: 121 DMDFGDLDFSKMNMGGLD 138
           DMDFGD DF+ +NMG  D
Sbjct: 121 DMDFGDFDFNGLNMGDTD 138

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357497475|ref|XP_003619026.1| Ripening regulated protein DDTFR8 [Medicago truncatula] gi|355494041|gb|AES75244.1| Ripening regulated protein DDTFR8 [Medicago truncatula]

 Score =  202 bits (513), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 99/149 (66%), Positives = 121/149 (81%), Gaps = 6/149 (4%)

Query: 1   MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
           MSRHPTVKWAQR++ + IT++LPDAQDVKLK+EPEGKF+FSAT+G +KIPYEV++DL+D 
Sbjct: 1   MSRHPTVKWAQRSEELSITVELPDAQDVKLKVEPEGKFYFSATAGAEKIPYEVNVDLFDS 60

Query: 61  VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDD-K 119
           +DVN+   S   R I YLVKKAENKWW RLLKQ GK P FLK+DWDKW+DEDE  + + K
Sbjct: 61  IDVNDIITSASSRQICYLVKKAENKWWDRLLKQGGKIPSFLKIDWDKWVDEDEYYEQEAK 120

Query: 120 P--DMDFGDLDFSKMNMG---GLDAEAAG 143
           P  D D GD+DFSK+NMG   GL+ +AAG
Sbjct: 121 PASDKDLGDIDFSKLNMGGGDGLELDAAG 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2133269	241	AT4G02450 "AT4G02450" [Arabido	0.560	0.423	0.475	4.8e-23
TAIR|locus:504955859	204	AT3G03773 "AT3G03773" [Arabido	0.554	0.495	0.475	4.3e-22
UNIPROTKB|G4MKS2	209	MGG_06669 "Uncharacterized pro	0.527	0.459	0.357	4.6e-12
WB|WBGene00022599	175	ZC395.10.2 [Caenorhabditis ele	0.543	0.565	0.375	1.7e-11
ZFIN|ZDB-GENE-040625-144	158	ptges3b "prostaglandin E synth	0.505	0.582	0.389	7.4e-11
POMBASE|SPAC9E9.13	186	wos2 "p23 homolog, predicted c	0.478	0.467	0.377	2.5e-10
UNIPROTKB|Q3ZBF7	160	PTGES3 "Prostaglandin E syntha	0.494	0.562	0.336	2e-08
UNIPROTKB|B4DP11	139	PTGES3 "cDNA FLJ59942, highly	0.494	0.647	0.336	2e-08
UNIPROTKB|B4DP21	130	PTGES3 "Prostaglandin E syntha	0.494	0.692	0.336	2e-08
UNIPROTKB|Q15185	160	PTGES3 "Prostaglandin E syntha	0.494	0.562	0.336	2e-08

TAIR|locus:2133269 AT4G02450 "AT4G02450" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 49/103 (47%), Positives = 76/103 (73%)

Query:     1 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
             MSRHP VKWA+ T+++++T+ L D +D K+ L+PEG F FSA  GP+   YE+ ++L DK
Sbjct:     1 MSRHPEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADK 60

Query:    61 VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 103
             V+V ESK ++G R+I  +++KAE + W++LL+   KPP ++KV
Sbjct:    61 VNVEESKINIGERSIFCIIEKAEPERWNKLLR-VKKPPHYVKV 102

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:504955859 AT3G03773 "AT3G03773" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 49/103 (47%), Positives = 71/103 (68%)

Query:     1 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
             M R+P V WAQR+D+VY+T+ LPDA+D+ +K EP+G F FSA  G     +E  ++LY K
Sbjct:    55 MIRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSAL-GAQGERFEFSLELYGK 113

Query:    61 VDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 103
             + + E + +VGLRNI + ++K E  WW+RLLK   KP  ++KV
Sbjct:   114 I-MTEYRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKV 155

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|G4MKS2 MGG_06669 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 139 (54.0 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
 Identities = 39/109 (35%), Positives = 59/109 (54%)

Query:     5 PTVKWAQRTDR-------VYITIDLPD--AQDVKLKLEPEGKFFFSATSGPDKIPYEVDI 55
             P V WAQR+ +       VY+TI +PD  A ++KL L+P G   F+  S   K  Y +++
Sbjct:     8 PEVLWAQRSSKTEAEKNYVYLTISVPDVPASNLKLDLKPTG-LTFTGHSDTLKRTYHLEL 66

Query:    56 DLYDKVDVNESKASVGLRNIHYLVKKAENK--WWSRLLKQAGKPPVFLK 102
             + YD++D   S      +N+   ++K E K  +W RLLK + K   FLK
Sbjct:    67 EFYDEIDPAASATHHTAKNVEMKLRKKELKEEYWPRLLKDSKKVH-FLK 114

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0007346 "regulation of mitotic cell cycle" evidence=ISS

WB|WBGene00022599 ZC395.10.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 39/104 (37%), Positives = 57/104 (54%)

Query:     1 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDK 60
             M++ PTV WAQR   VY+TI++ +A+  +LK E   K  F  +S  DK  YE  ++ +D+
Sbjct:     1 MAKQPTVLWAQRESLVYLTIEVDEAKIEELKGEGN-KLHFQGSSKTDK--YEATLEFFDE 57

Query:    61 VDVNESK-ASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 103
             +D    K      R +   V+K    WW RLL+  GK   +LKV
Sbjct:    58 IDPASVKHTGSSTRVVEITVQKKTPAWWPRLLQNKGKVH-WLKV 100

GO:0000003 "reproduction" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0030016 "myofibril" evidence=IDA

ZFIN|ZDB-GENE-040625-144 ptges3b "prostaglandin E synthase 3b (cytosolic)" [Danio rerio (taxid:7955)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 37/95 (38%), Positives = 52/95 (54%)

Query:     4 HPTV-KWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVD 62
             HP   KW  R D V+I   + D++DVK+  + + KF FS  SG D + Y  +IDL+  +D
Sbjct:     2 HPAAAKWYDRRDFVFIEFLVEDSKDVKVNFD-KSKFGFSCLSGADNVKYSNEIDLFGSID 60

Query:    63 VNESKASVGLRNIHYLVKKAEN-KWWSRLLKQAGK 96
              + SK     R+I   ++KAE  K W RL K   K
Sbjct:    61 QDGSKHKRTDRSILCCLQKAETGKSWPRLTKDKAK 95

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPAC9E9.13 wos2 "p23 homolog, predicted co-chaperone Wos2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 37/98 (37%), Positives = 56/98 (57%)

Query:     5 PTVKWAQRTDR-------VYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDL 57
             P V WAQR+++       +Y+T+ +PDA D K+ L PE K    + SG +   Y V ID 
Sbjct:     8 PEVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPE-KLVIDSKSGANA-HYAVQIDF 65

Query:    58 YDKVDVNESKASVGLRNIHYLVKKAE--NKWWSRLLKQ 93
             +  +DV +SK SV  R I +++ K E   ++W RL K+
Sbjct:    66 FKDIDVEKSKYSVTGRYIFFVLYKKELQEEFWPRLTKE 103

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=ISO

GO:0007346 "regulation of mitotic cell cycle" evidence=IGI

GO:0032212 "positive regulation of telomere maintenance via telomerase" evidence=ISO

GO:0051087 "chaperone binding" evidence=ISO

UNIPROTKB|Q3ZBF7 PTGES3 "Prostaglandin E synthase 3" [Bos taurus (taxid:9913)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 31/92 (33%), Positives = 49/92 (53%)

Query:     6 TVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNE 65
             + KW  R D V+I   + D++DV +  E + K  FS   G D   +  +IDL+  +D N+
Sbjct:     5 SAKWYDRRDYVFIEFCVEDSKDVNVNFE-KSKLTFSCLGGSDNFKHLNEIDLFHCIDPND 63

Query:    66 SKASVGLRNIHYLVKKAEN-KWWSRLLKQAGK 96
             SK     R+I   ++K E+ + W RL K+  K
Sbjct:    64 SKHKRTDRSILCCLRKGESGQSWPRLTKERAK 95

GO:0001516 "prostaglandin biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005697 "telomerase holoenzyme complex" evidence=IEA

GO:0003720 "telomerase activity" evidence=IEA

GO:0050220 "prostaglandin-E synthase activity" evidence=IEA

UNIPROTKB|B4DP11 PTGES3 "cDNA FLJ59942, highly similar to Prostaglandin E synthase 3 (EC 5.3.99.3)" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 31/92 (33%), Positives = 49/92 (53%)

Query:     6 TVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNE 65
             + KW  R D V+I   + D++DV +  E + K  FS   G D   +  +IDL+  +D N+
Sbjct:     5 SAKWYDRRDYVFIEFCVEDSKDVNVNFE-KSKLTFSCLGGSDNFKHLNEIDLFHCIDPND 63

Query:    66 SKASVGLRNIHYLVKKAEN-KWWSRLLKQAGK 96
             SK     R+I   ++K E+ + W RL K+  K
Sbjct:    64 SKHKRTDRSILCCLRKGESGQSWPRLTKERAK 95

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|B4DP21 PTGES3 "Prostaglandin E synthase 3 (Cytosolic), isoform CRA_d" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 31/92 (33%), Positives = 49/92 (53%)

Query:     6 TVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNE 65
             + KW  R D V+I   + D++DV +  E + K  FS   G D   +  +IDL+  +D N+
Sbjct:     5 SAKWYDRRDYVFIEFCVEDSKDVNVNFE-KSKLTFSCLGGSDNFKHLNEIDLFHCIDPND 63

Query:    66 SKASVGLRNIHYLVKKAEN-KWWSRLLKQAGK 96
             SK     R+I   ++K E+ + W RL K+  K
Sbjct:    64 SKHKRTDRSILCCLRKGESGQSWPRLTKERAK 95

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q15185 PTGES3 "Prostaglandin E synthase 3" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 31/92 (33%), Positives = 49/92 (53%)

Query:     6 TVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNE 65
             + KW  R D V+I   + D++DV +  E + K  FS   G D   +  +IDL+  +D N+
Sbjct:     5 SAKWYDRRDYVFIEFCVEDSKDVNVNFE-KSKLTFSCLGGSDNFKHLNEIDLFHCIDPND 63

Query:    66 SKASVGLRNIHYLVKKAEN-KWWSRLLKQAGK 96
             SK     R+I   ++K E+ + W RL K+  K
Sbjct:    64 SKHKRTDRSILCCLRKGESGQSWPRLTKERAK 95

GO:0001516 "prostaglandin biosynthetic process" evidence=IEA;IDA

GO:0005697 "telomerase holoenzyme complex" evidence=IDA

GO:0003720 "telomerase activity" evidence=IDA

GO:0000781 "chromosome, telomeric region" evidence=IC

GO:0000723 "telomere maintenance" evidence=TAS

GO:0051082 "unfolded protein binding" evidence=IDA

GO:0050220 "prostaglandin-E synthase activity" evidence=IDA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
cd06465	108	cd06465, p23_hB-ind1_like, p23_like domain found i	8e-46
cd06463	84	cd06463, p23_like, Proteins containing this p23_li	8e-17
pfam04969	78	pfam04969, CS, CS domain	3e-12
cd00237	106	cd00237, p23, p23 binds heat shock protein (Hsp)90	6e-12
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	4e-07
cd06466	84	cd06466, p23_CS_SGT1_like, p23_like domain similar	0.001

>gnl|CDD|107222 cd06465, p23_hB-ind1_like, p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

 Score =  145 bits (369), Expect = 8e-46
 Identities = 55/110 (50%), Positives = 73/110 (66%), Gaps = 3/110 (2%)

Query: 5   PTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVN 64
           P V WAQR+D VY+TI+LPDA+D K+KLEP     F A  G     YE D++ Y ++D  
Sbjct: 1   PPVLWAQRSDVVYLTIELPDAKDPKIKLEPT-SLSFKAKGGGGGKKYEFDLEFYKEIDPE 59

Query: 65  ESKASVGLRNIHYLVKKAENK-WWSRLLKQAGKPPVFLKVDWDKWIDEDE 113
           ESK  V  R I ++++K E   +W RL K+ GK P +LKVD+DKW+DEDE
Sbjct: 60  ESKYKVTGRQIEFVLRKKEAGEYWPRLTKEKGKLP-WLKVDFDKWVDEDE 108

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity. Length = 108

>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

 Score = 71.2 bits (175), Expect = 8e-17
 Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 9  WAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNES 66
          W Q  D V ITI L D    DVK++  P+     S   G  K  Y ++ +L+  +D  ES
Sbjct: 1  WYQTLDEVTITIPLKDVTKKDVKVEFTPK-SLTVSVKGGGGK-EYLLEGELFGPIDPEES 58

Query: 67 KASVGLRNIH-YLVKKAENKWWSRLL 91
          K +V  R I   L KK   +WW RL 
Sbjct: 59 KWTVEDRKIEITLKKKEPGEWWPRLE 84

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|218355 pfam04969, CS, CS domain

 Score = 58.8 bits (143), Expect = 3e-12
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 5  PTVKWAQRTDRVYITIDLPD---AQDVKLKLEPEG-KFFFSATSGPDKIPYEVDIDLYDK 60
          P   W Q  D V ITI L      +DVK++++P   K       GP    Y +D +L+  
Sbjct: 1  PRYDWYQTLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIK---GPGGKEYLLDGELFGP 57

Query: 61 VDVNESKASVGLRNIHYLVKK 81
          +D  ES   +    +   +KK
Sbjct: 58 IDPEESSWKIEDTKVEITLKK 78

The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans but are found in separate proteins in plants; this is thought to be indicative of an interaction between CS and CHORD. It has been suggested that the CS domain is a binding module for HSP90, implying that CS domain-containing proteins are involved in recruiting heat shock proteins to multiprotein assemblies. Length = 78

>gnl|CDD|107218 cd00237, p23, p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

 Score = 59.1 bits (143), Expect = 6e-12
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 4   HPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDV 63
                W  R D V+I   + D++DVK+  E + K  FS  +G D +    +I+LYD+VD 
Sbjct: 1   PAKTLWYDRRDYVFIEFCVEDSKDVKVDFE-KSKLTFSCLNG-DNVKIYNEIELYDRVDP 58

Query: 64  NESKASVGLRNIHYLVKKA-ENKWWSRLLKQAGKPPVFLKVDWDKWID 110
           N+SK     R+I   ++K  E   W RL K+  K P +L VD+D W D
Sbjct: 59  NDSKHKRTDRSILCCLRKGKEGVAWPRLTKEKAK-PNWLSVDFDNWRD 105

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Length = 106

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 9  WAQRTDRVYITIDLP--DAQDVKLKLEP-----EGKFFFSATSGPDKIPYEVDIDLYDKV 61
          W Q  D V +T+DLP    +D+K+++E       GK             +E   +L + V
Sbjct: 1  WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDV 60

Query: 62 DVNESKASV 70
          D  +SKAS+
Sbjct: 61 DPEKSKASL 69

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

>gnl|CDD|107223 cd06466, p23_CS_SGT1_like, p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 9  WAQRTDRVYITI--DLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNES 66
          W Q    V +TI     D +DVK++   +     S         Y++++DL+  +D  +S
Sbjct: 2  WYQTDTSVTVTIYAKNVDKEDVKVEFNEQ-SLSVSIILPGGS-EYQLELDLFGPIDPEQS 59

Query: 67 KASVGLRNIHYLVKKAENKWWSRL 90
          K SV    +   +KKAE   W  L
Sbjct: 60 KVSVLPTKVEITLKKAEPGSWPSL 83

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies suggest that the interaction of hSgt1 with Hsp90 and Hsp70 may be regulated by S100A6 in a Ca2+ dependent fashion. This group also includes the p23_like domains of Melusin and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Melusin is a vertebrate protein which interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
KOG3158	180	consensus HSP90 co-chaperone p23 [Posttranslationa	100.0
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	100.0
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	99.97
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	99.85
cd06488	87	p23_melusin_like p23_like domain similar to the C-	99.84
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.83
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	99.81
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	99.79
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.73
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	99.72
cd06463	84	p23_like Proteins containing this p23_like domain	99.71
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	99.71
KOG1309	196	consensus Suppressor of G2 allele of skp1 [Signal	99.7
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	99.68
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	99.61
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	99.58
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	99.57
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	99.56
KOG1667	320	consensus Zn2+-binding protein Melusin/RAR1, conta	99.32
KOG2265	179	consensus Nuclear distribution protein NUDC [Signa	99.27
cd00298	80	ACD_sHsps_p23-like This domain family includes the	99.1
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	98.67
KOG3260	224	consensus Calcyclin-binding protein CacyBP [Signal	98.64
KOG4379	596	consensus Uncharacterized conserved protein (tumor	97.99
COG0071	146	IbpA Molecular chaperone (small heat shock protein	97.85
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	97.7
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	97.31
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	97.29
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	97.02
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	96.18
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	96.11
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	96.1
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	96.01
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	95.9
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	95.83
PRK10743	137	heat shock protein IbpA; Provisional	95.68
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	95.36
PRK11597	142	heat shock chaperone IbpB; Provisional	95.2
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	95.2
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	94.4
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	93.75
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	89.72
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	89.4

>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-42  Score=277.50  Aligned_cols=137  Identities=43%  Similarity=0.771  Sum_probs=121.1

Q ss_pred             CCCCCCeEEEecCCeEEEEEEcCCCCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEE
Q 030130            1 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVK   80 (182)
Q Consensus         1 Ms~~P~v~WaQr~d~V~LtI~l~d~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~Lk   80 (182)
                      |.++|.|.||||.+.|||||+|.++++++|+|++. +|+|+|+++.+++.|+++|+||++|+|++|++++++|.|.++|+
T Consensus         4 ~~~~p~v~Waqr~~~vyltv~Ved~~d~~v~~e~~-~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~   82 (180)
T KOG3158|consen    4 GMQPPEVKWAQRRDLVYLTVCVEDAKDVHVNLEPS-KLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILR   82 (180)
T ss_pred             cccCCcchhhhhcCeEEEEEEeccCccceeecccc-EEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEE
Confidence            34789999999999999999999999999999984 89999999888899999999999999999999999999999999


Q ss_pred             eCCC-ccccccccccCCCCCcceecCCccccccccCCCC---CCCCCCCCCCcccC--CCCCCCCC
Q 030130           81 KAEN-KWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDD---KPDMDFGDLDFSKM--NMGGLDAE  140 (182)
Q Consensus        81 Kk~~-~~WprL~k~~~K~~~~lkvDwdkw~DEddeee~~---~~~~~~~~~df~~m--~mgg~~~~  140 (182)
                      |++. .+|||||+++.|+| |||+||+||+||+|++++.   +++ ..++|+|++|  ||||++++
T Consensus        83 K~e~~~~WprLtkeK~K~h-wLkvDFdkW~Dededde~~~~~~~g-~a~g~~~~~~mggmgg~~~~  146 (180)
T KOG3158|consen   83 KKELGEYWPRLTKEKAKLH-WLKVDFDKWVDEDEDDEAEDADGMG-GAGGMDFSQMMGGMGGAEGV  146 (180)
T ss_pred             ccccccccchhhhcccccc-eEEcchhhccccccccchhhccccc-cccccchhhccccCCccccc
Confidence            9887 59999999999997 9999999999999877654   222 3566677776  47776665

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=100.00  E-value=2.7e-35  Score=221.31  Aligned_cols=105  Identities=37%  Similarity=0.638  Sum_probs=98.3

Q ss_pred             CCCeEEEecCCeEEEEEEcCCCCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeCC
Q 030130            4 HPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAE   83 (182)
Q Consensus         4 ~P~v~WaQr~d~V~LtI~l~d~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~   83 (182)
                      +|.+.||||.+.|||||.++++++++|+|++ ++|+|++.++ ++..|+++|+||++|+|++|++++++|+|+|+|+|++
T Consensus         1 ~p~v~WaQr~~~V~ltI~v~d~~d~~v~l~~-~~l~f~~~~~-~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~   78 (106)
T cd00237           1 PAKTLWYDRRDYVFIEFCVEDSKDVKVDFEK-SKLTFSCLNG-DNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGK   78 (106)
T ss_pred             CCcceeeECCCEEEEEEEeCCCCCcEEEEec-CEEEEEEECC-CCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCC
Confidence            5899999999999999999999999999998 4999999775 5677999999999999999999999999999999997


Q ss_pred             Cc-cccccccccCCCCCcceecCCccccc
Q 030130           84 NK-WWSRLLKQAGKPPVFLKVDWDKWIDE  111 (182)
Q Consensus        84 ~~-~WprL~k~~~K~~~~lkvDwdkw~DE  111 (182)
                      .+ +||||++++.|++ ||++||+||+||
T Consensus        79 ~~~~WprL~k~~~k~~-~lk~DfdkW~D~  106 (106)
T cd00237          79 EGVAWPRLTKEKAKPN-WLSVDFDNWRDW  106 (106)
T ss_pred             CCCCCchhhcCCCCCC-cEECcchhccCC
Confidence            65 9999999999986 999999999986

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=99.97  E-value=5.4e-30  Score=191.44  Aligned_cols=107  Identities=51%  Similarity=0.939  Sum_probs=100.2

Q ss_pred             CCeEEEecCCeEEEEEEcCCCCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeCC-
Q 030130            5 PTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAE-   83 (182)
Q Consensus         5 P~v~WaQr~d~V~LtI~l~d~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~-   83 (182)
                      |.|.||||.+.|+|+|+++++++++|.|++ ++|+|++.+..+++.|.++++||++|+|++|+|++.+++|+|+|+|++ 
T Consensus         1 p~~~W~Qt~~~V~i~i~~~~~~~~~V~~~~-~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~   79 (108)
T cd06465           1 PPVLWAQRSDVVYLTIELPDAKDPKIKLEP-TSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA   79 (108)
T ss_pred             CceeeeECCCEEEEEEEeCCCCCcEEEEEC-CEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence            789999999999999999999999999997 499999876445677999999999999999999999999999999999 


Q ss_pred             CccccccccccCCCCCcceecCCccccccc
Q 030130           84 NKWWSRLLKQAGKPPVFLKVDWDKWIDEDE  113 (182)
Q Consensus        84 ~~~WprL~k~~~K~~~~lkvDwdkw~DEdd  113 (182)
                      +++|+||++++.|++ |+++||+||+||||
T Consensus        80 ~~~W~~L~~~~~k~~-~~~~d~~~w~d~~~  108 (108)
T cd06465          80 GEYWPRLTKEKGKLP-WLKVDFDKWVDEDE  108 (108)
T ss_pred             CCCCcccccCCCCCC-ceECCchhcccCCC
Confidence            789999999999997 99999999999986

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=99.85  E-value=3.3e-21  Score=137.65  Aligned_cols=82  Identities=23%  Similarity=0.347  Sum_probs=75.6

Q ss_pred             EEEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeCCCc
Q 030130            8 KWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENK   85 (182)
Q Consensus         8 ~WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~~~   85 (182)
                      +||||.+.|+|+|+++++  ++++|+|++ ++|+|++.+. +++.|.++++||++|+|++|++++++++|+|+|+|+++.
T Consensus         1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~-~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~   78 (84)
T cd06489           1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLP-SGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAI   78 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECC-CCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCC
Confidence            599999999999999998  789999997 5999998863 456799999999999999999999999999999999888


Q ss_pred             cccccc
Q 030130           86 WWSRLL   91 (182)
Q Consensus        86 ~WprL~   91 (182)
                      +|+||+
T Consensus        79 ~W~~Le   84 (84)
T cd06489          79 RWSKLE   84 (84)
T ss_pred             CCccCC
Confidence            999995

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=99.84  E-value=1.7e-20  Score=135.56  Aligned_cols=85  Identities=16%  Similarity=0.302  Sum_probs=76.0

Q ss_pred             CCeEEEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeC
Q 030130            5 PTVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKA   82 (182)
Q Consensus         5 P~v~WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk   82 (182)
                      +|++||||.+.|+|+|+++++  ++++|.+++ ++|+|++..+ ++..|.+.|+||++|+|+.|++++.+++|+|+|+|+
T Consensus         1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~-~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~   78 (87)
T cd06488           1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFE-GNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKA   78 (87)
T ss_pred             CCccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECC-CCceEEEEeeccceEChhHcEEEecCcEEEEEEEeC
Confidence            589999999999999999765  578999987 4888887653 456799999999999999999999999999999999


Q ss_pred             CCccccccc
Q 030130           83 ENKWWSRLL   91 (182)
Q Consensus        83 ~~~~WprL~   91 (182)
                      ++++|++|+
T Consensus        79 ~~~~W~~Le   87 (87)
T cd06488          79 EPGSWAKLE   87 (87)
T ss_pred             CCCcCccCC
Confidence            988999995

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.83  E-value=9.7e-21  Score=167.44  Aligned_cols=125  Identities=21%  Similarity=0.293  Sum_probs=98.1

Q ss_pred             CCeEEEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeC
Q 030130            5 PTVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKA   82 (182)
Q Consensus         5 P~v~WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk   82 (182)
                      +|+.|||+.+.|+|+|+++++  .+++|+|+.+ +|+|+... .++..|.|.+.||++|+|+.|++++.+++|+|+|+|+
T Consensus       157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~-~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~  234 (356)
T PLN03088        157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQ-ILSVVIEV-PGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKA  234 (356)
T ss_pred             cccceeecCCEEEEEEEecCCChHHcEEEeecC-EEEEEEec-CCCcceeecccccccccccccEEEEecceEEEEEecC
Confidence            689999999999999999987  4899999874 89998765 3557899999999999999999999999999999999


Q ss_pred             CCccccccccccCC--CC------------C-----cceecCCccccccccCC---CCCCCCCCCCCCcccC
Q 030130           83 ENKWWSRLLKQAGK--PP------------V-----FLKVDWDKWIDEDEEGK---DDKPDMDFGDLDFSKM  132 (182)
Q Consensus        83 ~~~~WprL~k~~~K--~~------------~-----~lkvDwdkw~DEddeee---~~~~~~~~~~~df~~m  132 (182)
                      ++..|++|++....  ++            .     --++|||||..+.++|+   ...++..+++| |.+|
T Consensus       235 ~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~-f~~i  305 (356)
T PLN03088        235 EPITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKF-FREI  305 (356)
T ss_pred             CCCCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHH-HHHH
Confidence            98899999976432  11            0     12579999976643322   11112246667 8877

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=99.81  E-value=1.8e-19  Score=130.24  Aligned_cols=84  Identities=23%  Similarity=0.362  Sum_probs=76.0

Q ss_pred             CeEEEecCCeEEEEEEcCCC-----CceeEEEecCcEEEEEEeeCCCCCceEEEEe-ccCCcccCCceEEecCCeEEEEE
Q 030130            6 TVKWAQRTDRVYITIDLPDA-----QDVKLKLEPEGKFFFSATSGPDKIPYEVDID-LYDKVDVNESKASVGLRNIHYLV   79 (182)
Q Consensus         6 ~v~WaQr~d~V~LtI~l~d~-----kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~le-Lf~~IdpeeSk~~v~~rkIei~L   79 (182)
                      +|.|+||.+.|+|+|+++++     ++++|+|++ ++|.|++.+ .++..|.+.+. ||++|+|++|+|++.+++|+|+|
T Consensus         3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~-~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L   80 (92)
T cd06468           3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHD-LNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITL   80 (92)
T ss_pred             eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEEC-CCCcEEEEEehHhhCccCccccEEEEeCCEEEEEE
Confidence            68999999999999999875     678999987 499999865 35678999997 99999999999999999999999


Q ss_pred             EeCCCccccccc
Q 030130           80 KKAENKWWSRLL   91 (182)
Q Consensus        80 kKk~~~~WprL~   91 (182)
                      +|+++++|++|+
T Consensus        81 ~K~~~~~W~~L~   92 (92)
T cd06468          81 AKKKEKKWESLT   92 (92)
T ss_pred             EeCCCCccCccC
Confidence            999989999995

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=99.79  E-value=5.3e-19  Score=125.02  Aligned_cols=82  Identities=28%  Similarity=0.423  Sum_probs=74.9

Q ss_pred             EEEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeCCCc
Q 030130            8 KWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENK   85 (182)
Q Consensus         8 ~WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~~~   85 (182)
                      .|+|+.+.|+|+|+++++  +++.|.+++ ++|.|++.++ +++.|.++++||++|+|++|++++.+++|+|+|+|+.++
T Consensus         1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~   78 (84)
T cd06466           1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP-GGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPG   78 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC-CCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCC
Confidence            599999999999999998  689999987 5999998763 356899999999999999999999999999999999989


Q ss_pred             cccccc
Q 030130           86 WWSRLL   91 (182)
Q Consensus        86 ~WprL~   91 (182)
                      +||||+
T Consensus        79 ~W~~L~   84 (84)
T cd06466          79 SWPSLE   84 (84)
T ss_pred             CCccCC
Confidence            999985

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.73  E-value=2.8e-17  Score=114.92  Aligned_cols=76  Identities=24%  Similarity=0.385  Sum_probs=67.2

Q ss_pred             EEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeCCCcc
Q 030130            9 WAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKW   86 (182)
Q Consensus         9 WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~~~~   86 (182)
                      |+||.+.|+|+|.+|+++  ++.|+++. +.|.|++      ..|.+.++||++|+|++|++++.+++|+|+|.|+++++
T Consensus         1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~   73 (78)
T cd06469           1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGI   73 (78)
T ss_pred             CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcC------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCc
Confidence            999999999999999985  66777765 3666653      46999999999999999999999999999999998889


Q ss_pred             ccccc
Q 030130           87 WSRLL   91 (182)
Q Consensus        87 WprL~   91 (182)
                      |+||.
T Consensus        74 W~~L~   78 (78)
T cd06469          74 WEALC   78 (78)
T ss_pred             ccccC
Confidence            99995

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=99.72  E-value=1.1e-16  Score=110.71  Aligned_cols=75  Identities=31%  Similarity=0.455  Sum_probs=66.4

Q ss_pred             CCeEEEecCCeEEEEEEcCCC----CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEE
Q 030130            5 PTVKWAQRTDRVYITIDLPDA----QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVK   80 (182)
Q Consensus         5 P~v~WaQr~d~V~LtI~l~d~----kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~Lk   80 (182)
                      |+|.|+|+.+.|+|+|.+++.    ++++|+|++ ++|.|++..+ ++..|.++++||++|+|++|+|++.+++|+|+|+
T Consensus         1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~   78 (79)
T PF04969_consen    1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSG-DGKEYLLEGELFGEIDPDESTWKVKDNKIEITLK   78 (79)
T ss_dssp             SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEET-TSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEE
T ss_pred             CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEcc-CCceEEEEEEEeeeEcchhcEEEEECCEEEEEEE
Confidence            899999999999999999654    689999998 5999998864 3389999999999999999999999999999999


Q ss_pred             e
Q 030130           81 K   81 (182)
Q Consensus        81 K   81 (182)
                      |
T Consensus        79 K   79 (79)
T PF04969_consen   79 K   79 (79)
T ss_dssp             B
T ss_pred             C
Confidence            8

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=99.71  E-value=8.3e-17  Score=111.86  Aligned_cols=81  Identities=38%  Similarity=0.621  Sum_probs=74.2

Q ss_pred             EEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeCCC-c
Q 030130            9 WAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAEN-K   85 (182)
Q Consensus         9 WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~~-~   85 (182)
                      |+|+.+.|+|+|.+|++  +++.|.|+. ++|+|++.+. ++..|.++++||++|+|++|+|++.+++|+|+|+|+.+ .
T Consensus         1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~   78 (84)
T cd06463           1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGG-GGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGE   78 (84)
T ss_pred             CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCC-CCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCC
Confidence            99999999999999997  799999987 5999998752 35789999999999999999999999999999999998 6


Q ss_pred             cccccc
Q 030130           86 WWSRLL   91 (182)
Q Consensus        86 ~WprL~   91 (182)
                      +|++|+
T Consensus        79 ~W~~l~   84 (84)
T cd06463          79 WWPRLE   84 (84)
T ss_pred             CCcccC
Confidence            999985

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=99.71  E-value=7.4e-17  Score=114.54  Aligned_cols=80  Identities=30%  Similarity=0.557  Sum_probs=71.8

Q ss_pred             eEEEecCCeEEEEEEcCCC---CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecC-CeEEEEEEeC
Q 030130            7 VKWAQRTDRVYITIDLPDA---QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL-RNIHYLVKKA   82 (182)
Q Consensus         7 v~WaQr~d~V~LtI~l~d~---kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~-rkIei~LkKk   82 (182)
                      |.|+||.+.|+|+|.+++.   ++++|+|++ ++|+|+..+    ..+.+.+.||++|+|++|+|++.+ ++|+|+|+|+
T Consensus         1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~----~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~   75 (85)
T cd06467           1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG----GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKR   75 (85)
T ss_pred             CEEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC----CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEEC
Confidence            6899999999999999864   799999998 599998753    357889999999999999999999 9999999999


Q ss_pred             CC-ccccccc
Q 030130           83 EN-KWWSRLL   91 (182)
Q Consensus        83 ~~-~~WprL~   91 (182)
                      ++ .+|++|.
T Consensus        76 ~~~~~W~~L~   85 (85)
T cd06467          76 NEGEWWPSLV   85 (85)
T ss_pred             CCCccccccC
Confidence            98 5999985

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]

Probab=99.70  E-value=7.1e-18  Score=136.64  Aligned_cols=126  Identities=25%  Similarity=0.372  Sum_probs=99.9

Q ss_pred             CCCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEe
Q 030130            4 HPTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKK   81 (182)
Q Consensus         4 ~P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkK   81 (182)
                      .++|+|||+...|.|||+.+++.  ++.|.|.. +.|++..... ++..|.|.+.||++|.|+.|++++.+.+|+|+|.|
T Consensus         3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~-~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K   80 (196)
T KOG1309|consen    3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLP-SGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAK   80 (196)
T ss_pred             cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecC-CchhhhhhHHhcccccccceeeEeeeeeEEEEecc
Confidence            57999999999999999999984  78888875 5888887763 67789999999999999999999999999999999


Q ss_pred             CCCccccccccccCCC--------------C-CcceecCCccccccccCCCC--CCCCCCCCCCcccC
Q 030130           82 AENKWWSRLLKQAGKP--------------P-VFLKVDWDKWIDEDEEGKDD--KPDMDFGDLDFSKM  132 (182)
Q Consensus        82 k~~~~WprL~k~~~K~--------------~-~~lkvDwdkw~DEddeee~~--~~~~~~~~~df~~m  132 (182)
                      .+...|..|+++++..              | .-.+.||++...|++.+|+.  ..+.-++.| |++|
T Consensus        81 ~~~irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~e~l~dAAl~~l-F~ki  147 (196)
T KOG1309|consen   81 AEIIRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEEDEKLEDAALNKL-FQKI  147 (196)
T ss_pred             ccchhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhccchhHHHHHHH-HHHH
Confidence            8888999999654311              0 11378999999877644432  222234555 7776

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=99.68  E-value=2.8e-16  Score=112.79  Aligned_cols=80  Identities=20%  Similarity=0.424  Sum_probs=68.2

Q ss_pred             eEEEecCCeEEEEEEcCC-C--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEec-CCeEEEEEEeC
Q 030130            7 VKWAQRTDRVYITIDLPD-A--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVG-LRNIHYLVKKA   82 (182)
Q Consensus         7 v~WaQr~d~V~LtI~l~d-~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~-~rkIei~LkKk   82 (182)
                      |.|+||.+.|+|+|.+|. +  ++++|+|+++ +|.|...+    ....++++||+.|+|++|+|++. +++|+|+|.|+
T Consensus         1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~-~l~v~~~~----~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~   75 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPD-HISIALKD----QAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKK   75 (85)
T ss_pred             CccEEeCCEEEEEEECCCCCChhhEEEEEecC-EEEEEeCC----CCeEEeCcccCcccccCcEEEEeCCCEEEEEEEEC
Confidence            689999999999999974 3  7999999984 99997642    23458889999999999999985 56899999999


Q ss_pred             CCc-cccccc
Q 030130           83 ENK-WWSRLL   91 (182)
Q Consensus        83 ~~~-~WprL~   91 (182)
                      +++ +||+|.
T Consensus        76 ~~~~~W~~L~   85 (85)
T cd06493          76 DEGPTWPELV   85 (85)
T ss_pred             CCCccccccC
Confidence            876 999984

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=99.61  E-value=4.4e-15  Score=107.73  Aligned_cols=80  Identities=24%  Similarity=0.476  Sum_probs=69.8

Q ss_pred             eEEEecCCeEEEEEEcCC-----CCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecC-CeEEEEEE
Q 030130            7 VKWAQRTDRVYITIDLPD-----AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL-RNIHYLVK   80 (182)
Q Consensus         7 v~WaQr~d~V~LtI~l~d-----~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~-rkIei~Lk   80 (182)
                      |.|.||.+.|+|+|.+|.     +++++|+|+++ +|++..++    +.+.++.+||++|++++|+|++.+ +.|.|+|.
T Consensus         1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~~~g----~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~   75 (87)
T cd06492           1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVGLKG----QPPIIDGELYNEVKVEESSWLIEDGKVVTVNLE   75 (87)
T ss_pred             CccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEEECC----CceEEeCcccCcccccccEEEEeCCCEEEEEEE
Confidence            689999999999999953     47999999985 99998753    467899999999999999999976 67999999


Q ss_pred             eCCC-ccccccc
Q 030130           81 KAEN-KWWSRLL   91 (182)
Q Consensus        81 Kk~~-~~WprL~   91 (182)
                      |... .|||+|+
T Consensus        76 K~~~~~wW~~l~   87 (87)
T cd06492          76 KINKMEWWSRLV   87 (87)
T ss_pred             ECCCCccccccC
Confidence            9976 4999985

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=99.58  E-value=2.7e-14  Score=106.73  Aligned_cols=93  Identities=17%  Similarity=0.330  Sum_probs=78.2

Q ss_pred             CCCCeEEEecCCeEEEEEEcCC----CCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecC-CeEEE
Q 030130            3 RHPTVKWAQRTDRVYITIDLPD----AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL-RNIHY   77 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d----~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~-rkIei   77 (182)
                      .++.|.|.|+.+.|.|+|.+|.    +++++|+|++ ++|.+..+++. +..-.++.+||+.|++++|.|++.+ +.|.|
T Consensus         3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~-~~~~~i~G~L~~~V~~des~Wtled~~~l~I   80 (102)
T cd06495           3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGG-GEKVLMEGEFTHKINTENSLWSLEPGKCVLL   80 (102)
T ss_pred             cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCC-CCceEEeCcccCcccCccceEEEeCCCEEEE
Confidence            3578999999999999999995    3689999998 49999987422 2234589999999999999999987 55899


Q ss_pred             EEEeCCCccccccccccCCC
Q 030130           78 LVKKAENKWWSRLLKQAGKP   97 (182)
Q Consensus        78 ~LkKk~~~~WprL~k~~~K~   97 (182)
                      +|.|....||++|.++..++
T Consensus        81 ~L~K~~~~wW~~v~~g~~~i  100 (102)
T cd06495          81 SLSKCSEVWWNAVLKGEEEI  100 (102)
T ss_pred             EEEECCCcccchhhCCCCcC
Confidence            99999877999999887543

Little is known about the function of the proteins in this subgroup.

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=99.57  E-value=3.4e-14  Score=102.89  Aligned_cols=80  Identities=20%  Similarity=0.317  Sum_probs=65.6

Q ss_pred             eEEEecCCeEEEEEEcCC--CCc--eeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEec--CCeEEEEEE
Q 030130            7 VKWAQRTDRVYITIDLPD--AQD--VKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVG--LRNIHYLVK   80 (182)
Q Consensus         7 v~WaQr~d~V~LtI~l~d--~kd--vkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~--~rkIei~Lk   80 (182)
                      ++|||+.+.|+|+|+.+.  ..+  +.+.++. ++|+++...+  +..|.++++||++|+|+. ++++.  ++||||+|+
T Consensus         1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~--~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~   76 (87)
T cd06490           1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG--DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLK   76 (87)
T ss_pred             CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC--CceEEEeeeccccCCCCc-EEEEcccCceEEEEEE
Confidence            589999999999999874  344  4455555 4888887653  567999999999998765 88877  569999999


Q ss_pred             eCCCcccccc
Q 030130           81 KAENKWWSRL   90 (182)
Q Consensus        81 Kk~~~~WprL   90 (182)
                      |+++..|++|
T Consensus        77 K~e~~~W~~L   86 (87)
T cd06490          77 KKEPEKWTSL   86 (87)
T ss_pred             cCCCCccccC
Confidence            9999999998

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=99.56  E-value=3.6e-14  Score=104.37  Aligned_cols=83  Identities=28%  Similarity=0.478  Sum_probs=71.7

Q ss_pred             CCCCeEEEecCCeEEEEEEcCC---CCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCe-EEEE
Q 030130            3 RHPTVKWAQRTDRVYITIDLPD---AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRN-IHYL   78 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d---~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rk-Iei~   78 (182)
                      .++.|.|+|+.+.|.|+|.+|.   .++++|.|+++ +|.+..++    .. .++.+||+.|+|++|.|++.+.+ |+|.
T Consensus         4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~g----~~-~l~G~L~~~I~~destWtled~k~l~I~   77 (93)
T cd06494           4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVKG----QE-VLKGKLFDSVVADECTWTLEDRKLIRIV   77 (93)
T ss_pred             cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEECC----EE-EEcCcccCccCcccCEEEEECCcEEEEE
Confidence            4689999999999999999885   36999999984 99998753    33 68889999999999999999988 6999


Q ss_pred             EEeCCCc---cccccc
Q 030130           79 VKKAENK---WWSRLL   91 (182)
Q Consensus        79 LkKk~~~---~WprL~   91 (182)
                      |.|.+..   +|++|+
T Consensus        78 L~K~~~~~~~~W~sl~   93 (93)
T cd06494          78 LTKSNRDAGNCWKSLL   93 (93)
T ss_pred             EEeCCCCCCccccccC
Confidence            9998644   999984

Little is known about the function of the proteins in this subgroup.

>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]

Probab=99.32  E-value=4.1e-12  Score=108.22  Aligned_cols=90  Identities=23%  Similarity=0.320  Sum_probs=78.2

Q ss_pred             CCCCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEE
Q 030130            3 RHPTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVK   80 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~Lk   80 (182)
                      ...|++|.|+...|+|+|+.+..-  .-.|+.+. ..|+++...+.++..|.++++|++.|++++|.+.+..++|+|+|+
T Consensus       213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~  291 (320)
T KOG1667|consen  213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLK  291 (320)
T ss_pred             ccchhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEe
Confidence            357999999999999999998753  44566665 378888776667789999999999999999999999999999999


Q ss_pred             eCCCccccccccc
Q 030130           81 KAENKWWSRLLKQ   93 (182)
Q Consensus        81 Kk~~~~WprL~k~   93 (182)
                      |++++.|+||.-.
T Consensus       292 k~ep~sWa~Le~p  304 (320)
T KOG1667|consen  292 KAEPGSWARLEFP  304 (320)
T ss_pred             ccCCCCcccccCC
Confidence            9999999999865

>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]

Probab=99.27  E-value=8e-12  Score=101.01  Aligned_cols=97  Identities=23%  Similarity=0.368  Sum_probs=77.9

Q ss_pred             CCCCeEEEecCCeEEEEEEcCC----CCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEE
Q 030130            3 RHPTVKWAQRTDRVYITIDLPD----AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYL   78 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d----~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~   78 (182)
                      ..+.|.|+|+-..|.|.|.+|.    +++++|.|.. .+|.+..++    ....++.+||++|++++|.|+|.++++.++
T Consensus        17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg----~~~ildG~L~~~vk~des~WtiEd~k~i~i   91 (179)
T KOG2265|consen   17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKG----QPPILDGELSHSVKVDESTWTIEDGKMIVI   91 (179)
T ss_pred             cccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCC----CCceecCccccccccccceEEecCCEEEEE
Confidence            3578999999999999999884    3689999987 488888764    446799999999999999999998776555


Q ss_pred             EEeCCC--ccccccccccCCCCCcceecC
Q 030130           79 VKKAEN--KWWSRLLKQAGKPPVFLKVDW  105 (182)
Q Consensus        79 LkKk~~--~~WprL~k~~~K~~~~lkvDw  105 (182)
                      +.|+..  .||.||+++...+. --+++-
T Consensus        92 ~l~K~~~~eWW~~ll~gep~ID-~~ki~~  119 (179)
T KOG2265|consen   92 LLKKSNKMEWWDSLLEGEPEID-TKKIEP  119 (179)
T ss_pred             EeeccchHHHHHHHHcCCCCCC-ccccCh
Confidence            544443  59999999886664 456666

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=99.10  E-value=7.3e-10  Score=74.68  Aligned_cols=72  Identities=29%  Similarity=0.443  Sum_probs=64.5

Q ss_pred             EEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCC------CCCceEEEEeccCCcccCCceEEecCCeEEEEEE
Q 030130            9 WAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP------DKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVK   80 (182)
Q Consensus         9 WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~------~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~Lk   80 (182)
                      |+|+.+.|+|+|.+|+.  +++.|.++. +.|.|++....      ....|.+.+.|++.|+++++++++....|+|+|.
T Consensus         1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~   79 (80)
T cd00298           1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP   79 (80)
T ss_pred             CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence            89999999999999997  689999987 59999987632      2468999999999999999999999999999998


Q ss_pred             e
Q 030130           81 K   81 (182)
Q Consensus        81 K   81 (182)
                      |
T Consensus        80 K   80 (80)
T cd00298          80 K   80 (80)
T ss_pred             C
Confidence            7

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=98.67  E-value=6.1e-09  Score=90.17  Aligned_cols=123  Identities=20%  Similarity=0.278  Sum_probs=92.4

Q ss_pred             CeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeCC
Q 030130            6 TVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAE   83 (182)
Q Consensus         6 ~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~   83 (182)
                      +|.|+|++..+.|-|+.+.+.  +|.+-++. +.|+++.+....+..+.+.+.||++|.|+.+.+++.+.++++.|+|.+
T Consensus       178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV~  256 (368)
T COG5091         178 AYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKVE  256 (368)
T ss_pred             eeeccccceeEEEEEecCCCCccccceeecC-CcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhhh
Confidence            577888888888888878776  45666776 589999887555667888899999999999999999988999999999


Q ss_pred             CccccccccccC----------CCC-------CcceecCCccccccccCCCCCCCCCCCCCCcccC
Q 030130           84 NKWWSRLLKQAG----------KPP-------VFLKVDWDKWIDEDEEGKDDKPDMDFGDLDFSKM  132 (182)
Q Consensus        84 ~~~WprL~k~~~----------K~~-------~~lkvDwdkw~DEddeee~~~~~~~~~~~df~~m  132 (182)
                      ...|..|.+...          +.+       ..-+.||++...+++-+|+.+-  .|.+| |++|
T Consensus       257 ~v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~dEe~ps--~~dsl-Fqkl  319 (368)
T COG5091         257 MVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGDEENPS--VMDSL-FQKL  319 (368)
T ss_pred             hhhhcccccCccccccccccccccccccCCccccccccHHHhhhhhcccccCch--HHHHH-HHHH
Confidence            889999986321          111       1368899999987775554222  12334 7777

>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]

Probab=98.64  E-value=5.2e-08  Score=79.77  Aligned_cols=85  Identities=22%  Similarity=0.376  Sum_probs=75.0

Q ss_pred             CeEEEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCCCCceEEEEe-ccCCcccCCceEEecCCeEEEEEEeC
Q 030130            6 TVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDID-LYDKVDVNESKASVGLRNIHYLVKKA   82 (182)
Q Consensus         6 ~v~WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~le-Lf~~IdpeeSk~~v~~rkIei~LkKk   82 (182)
                      .|-|-|+..+|-|-|.|.++  .+|+|.|++. +|.+.... -+++.|.+.+. |+++|.|+.|+.++....|.|.++|-
T Consensus        76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~-Sldl~v~d-lqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkV  153 (224)
T KOG3260|consen   76 LYGWDQSNKFVKMYITLEGVDEENVQVEFTPM-SLDLKVHD-LQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKV  153 (224)
T ss_pred             hcCccccCCeeEEEEEeecccccceeEEeccc-ceeeeeee-cCCcceeeehhhhccccChhhcccccccceEEEeehhh
Confidence            37899999999998888887  5899999984 98888775 47789999996 99999999999999999999999888


Q ss_pred             CCcccccccc
Q 030130           83 ENKWWSRLLK   92 (182)
Q Consensus        83 ~~~~WprL~k   92 (182)
                      +..+|.-|+.
T Consensus       154 e~~rwd~Lt~  163 (224)
T KOG3260|consen  154 ENTRWDYLTQ  163 (224)
T ss_pred             hcccchHHHH
Confidence            8889999974

>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]

Probab=97.99  E-value=1.6e-05  Score=72.95  Aligned_cols=88  Identities=20%  Similarity=0.348  Sum_probs=70.4

Q ss_pred             CCCCCCeEEEecCCeEEEEEEcCCC---CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecC-CeEE
Q 030130            1 MSRHPTVKWAQRTDRVYITIDLPDA---QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL-RNIH   76 (182)
Q Consensus         1 Ms~~P~v~WaQr~d~V~LtI~l~d~---kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~-rkIe   76 (182)
                      |-.+|.|.|.|+.+.+.+++.+|..   +++.|.+-. ++|.+...     -.-.|+..||+.|.-+.|.+.+.. .+++
T Consensus       286 ~~~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~-~~v~v~~~-----dh~~~~g~lyasv~he~s~~ii~ean~Le  359 (596)
T KOG4379|consen  286 NGGPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSK-TTVVVKHL-----DHVIFDGELYASVGHELSAFIIAEANGLE  359 (596)
T ss_pred             ccCCccceeeeccCcceEEEecccccccceEEEEecC-ceEEEEee-----eeEEeccchhhhccccchhhhhhhhccce
Confidence            4578999999999999999999863   466777765 36655532     245688899999999999999864 8999


Q ss_pred             EEEEeCCCc-ccccccccc
Q 030130           77 YLVKKAENK-WWSRLLKQA   94 (182)
Q Consensus        77 i~LkKk~~~-~WprL~k~~   94 (182)
                      +.|.|++.. .||||..++
T Consensus       360 ~sl~K~de~~twprL~~~d  378 (596)
T KOG4379|consen  360 LSLTKADEIQTWPRLFAQD  378 (596)
T ss_pred             EEEeecccccccchheeec
Confidence            999999654 899998654

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.00033  Score=54.85  Aligned_cols=81  Identities=23%  Similarity=0.283  Sum_probs=68.7

Q ss_pred             CCCCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC--------------CCceEEEEeccCCcccCCc
Q 030130            3 RHPTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD--------------KIPYEVDIDLYDKVDVNES   66 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~--------------~~~Y~l~leLf~~IdpeeS   66 (182)
                      ..|.|..+++.+.+.|++.||+++  +++|.++. +.|++++.....              ...|+-.+.|...|+++..
T Consensus        39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~  117 (146)
T COG0071          39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI  117 (146)
T ss_pred             CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence            469999999999999999999984  78999986 589999886321              2568889999999999987


Q ss_pred             eEEecCCeEEEEEEeCCC
Q 030130           67 KASVGLRNIHYLVKKAEN   84 (182)
Q Consensus        67 k~~v~~rkIei~LkKk~~   84 (182)
                      +.++...-+.|+|.|..+
T Consensus       118 ~A~~~nGvL~I~lpk~~~  135 (146)
T COG0071         118 KAKYKNGLLTVTLPKAEP  135 (146)
T ss_pred             eeEeeCcEEEEEEecccc
Confidence            888888889999999765

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=97.70  E-value=0.00056  Score=49.30  Aligned_cols=76  Identities=21%  Similarity=0.286  Sum_probs=60.9

Q ss_pred             CeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--------------CCCceEEEEeccCCcccCCceEE
Q 030130            6 TVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--------------DKIPYEVDIDLYDKVDVNESKAS   69 (182)
Q Consensus         6 ~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--------------~~~~Y~l~leLf~~IdpeeSk~~   69 (182)
                      ++.|+++.+.+.|.+.||+++  +++|.+..++.|++++....              ....|.-.+.|-..|+++..+.+
T Consensus         1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~   80 (92)
T cd06472           1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF   80 (92)
T ss_pred             CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence            578999999999999999985  78888864237899886411              02367778899999999988888


Q ss_pred             ecCCeEEEEEEe
Q 030130           70 VGLRNIHYLVKK   81 (182)
Q Consensus        70 v~~rkIei~LkK   81 (182)
                      +...-+.|+|.|
T Consensus        81 ~~nGvL~I~lPK   92 (92)
T cd06472          81 LENGVLTVTVPK   92 (92)
T ss_pred             EECCEEEEEecC
Confidence            888888998876

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=97.31  E-value=0.0039  Score=44.77  Aligned_cols=75  Identities=23%  Similarity=0.243  Sum_probs=57.9

Q ss_pred             CCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC----------------CCceEEEEeccCCcccCCc
Q 030130            5 PTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD----------------KIPYEVDIDLYDKVDVNES   66 (182)
Q Consensus         5 P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~----------------~~~Y~l~leLf~~IdpeeS   66 (182)
                      |++.++++.+.+.|.+.||+++  +++|.+.. +.|.+++.....                ...|.-.+.|- .|+++..
T Consensus         1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i   78 (93)
T cd06471           1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI   78 (93)
T ss_pred             CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence            5789999999999999999984  78888876 589998765210                01345556664 7888888


Q ss_pred             eEEecCCeEEEEEEe
Q 030130           67 KASVGLRNIHYLVKK   81 (182)
Q Consensus        67 k~~v~~rkIei~LkK   81 (182)
                      +.++...-+.|+|.|
T Consensus        79 ~A~~~dGvL~I~lPK   93 (93)
T cd06471          79 KAKYENGVLKITLPK   93 (93)
T ss_pred             EEEEECCEEEEEEcC
Confidence            888888888888876

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=97.29  E-value=0.0035  Score=43.41  Aligned_cols=72  Identities=22%  Similarity=0.290  Sum_probs=60.1

Q ss_pred             EEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC-------------CCceEEEEeccCCcccCCceEEecCC
Q 030130            9 WAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD-------------KIPYEVDIDLYDKVDVNESKASVGLR   73 (182)
Q Consensus         9 WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~-------------~~~Y~l~leLf~~IdpeeSk~~v~~r   73 (182)
                      ++++.+.+.|.|.+|++.  +++|.+.. +.|.+++.....             ...|...+.|-..|+++..+.++...
T Consensus         2 i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G   80 (88)
T cd06464           2 VYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG   80 (88)
T ss_pred             cEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence            678899999999999984  78888876 589998775211             35789999999999999999998888


Q ss_pred             eEEEEEEe
Q 030130           74 NIHYLVKK   81 (182)
Q Consensus        74 kIei~LkK   81 (182)
                      -+.|++.|
T Consensus        81 ~L~I~~pk   88 (88)
T cd06464          81 VLTITLPK   88 (88)
T ss_pred             EEEEEEcC
Confidence            88888875

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=97.02  E-value=0.017  Score=41.71  Aligned_cols=76  Identities=28%  Similarity=0.374  Sum_probs=58.5

Q ss_pred             EEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeC---CC---------CCceEEEEeccCCcccCCceEEecCC
Q 030130            8 KWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSG---PD---------KIPYEVDIDLYDKVDVNESKASVGLR   73 (182)
Q Consensus         8 ~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~---~~---------~~~Y~l~leLf~~IdpeeSk~~v~~r   73 (182)
                      +|.++.+.+.|.+.+|+..  +++|.+.. +.|.+++...   .+         ...|.-.+.|-..|+++..+.++...
T Consensus         1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G   79 (102)
T PF00011_consen    1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG   79 (102)
T ss_dssp             EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred             CeEECCCEEEEEEECCCCChHHEEEEEec-CccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence            5889999999999999974  88999986 5899988753   11         13577788999999999999999888


Q ss_pred             eEEEEEEeCCC
Q 030130           74 NIHYLVKKAEN   84 (182)
Q Consensus        74 kIei~LkKk~~   84 (182)
                      .+.|++.|...
T Consensus        80 vL~I~~pk~~~   90 (102)
T PF00011_consen   80 VLTITIPKKEE   90 (102)
T ss_dssp             EEEEEEEBSSS
T ss_pred             EEEEEEEcccc
Confidence            89999999764

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=96.18  E-value=0.05  Score=38.32  Aligned_cols=67  Identities=15%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             CeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC-------CCceEEEEeccCCcccCCceEEecC-CeEEEEEEe
Q 030130           14 DRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD-------KIPYEVDIDLYDKVDVNESKASVGL-RNIHYLVKK   81 (182)
Q Consensus        14 d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~-------~~~Y~l~leLf~~IdpeeSk~~v~~-rkIei~LkK   81 (182)
                      +.+.|++.+|+.+  +++|.+.. +.|.+++.....       ...|.-.+.|-..|+++..+.++.. .-+.|++.|
T Consensus         7 ~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk   83 (83)
T cd06526           7 EKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK   83 (83)
T ss_pred             eeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence            4789999999975  78999986 699999875221       1368888999999999998888887 778888865

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=96.11  E-value=0.089  Score=37.74  Aligned_cols=71  Identities=15%  Similarity=0.162  Sum_probs=55.9

Q ss_pred             EecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--CC-----CceEEEEeccCCcccCCceEEe-cCCeEEEEE
Q 030130           10 AQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--DK-----IPYEVDIDLYDKVDVNESKASV-GLRNIHYLV   79 (182)
Q Consensus        10 aQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~~-----~~Y~l~leLf~~IdpeeSk~~v-~~rkIei~L   79 (182)
                      +.+.+.+.|++.+|+++  +++|++.. +.|++++....  ..     .+|.-.+.|-..|+++..+.++ ...-+.|+|
T Consensus         6 ~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~   84 (86)
T cd06497           6 RSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSG   84 (86)
T ss_pred             EEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEe
Confidence            45778899999999985  78999986 69999987521  11     2366678899999999999998 577788888


Q ss_pred             Ee
Q 030130           80 KK   81 (182)
Q Consensus        80 kK   81 (182)
                      .|
T Consensus        85 PK   86 (86)
T cd06497          85 PK   86 (86)
T ss_pred             cC
Confidence            76

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=96.10  E-value=0.16  Score=36.42  Aligned_cols=74  Identities=16%  Similarity=0.285  Sum_probs=54.4

Q ss_pred             CCeEEEecC-CeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC-------------CCceEEEEeccCCcccCCceE
Q 030130            5 PTVKWAQRT-DRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD-------------KIPYEVDIDLYDKVDVNESKA   68 (182)
Q Consensus         5 P~v~WaQr~-d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~-------------~~~Y~l~leLf~~IdpeeSk~   68 (182)
                      |.+.=+++. +.+.|++.||+++  +++|.+.. +.|.+++.....             ...|.-.+.|-..|+..  +.
T Consensus         1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A   77 (90)
T cd06470           1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GA   77 (90)
T ss_pred             CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--ee
Confidence            556667775 8999999999985  78888875 589999764211             13577788898888885  55


Q ss_pred             EecCCeEEEEEEe
Q 030130           69 SVGLRNIHYLVKK   81 (182)
Q Consensus        69 ~v~~rkIei~LkK   81 (182)
                      +....-+.|+|.+
T Consensus        78 ~~~~GvL~I~l~~   90 (90)
T cd06470          78 ELENGLLTIDLER   90 (90)
T ss_pred             EEeCCEEEEEEEC
Confidence            6667777777753

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=96.01  E-value=0.12  Score=37.04  Aligned_cols=71  Identities=14%  Similarity=0.129  Sum_probs=56.1

Q ss_pred             EEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC---C----CceEEEEeccCCcccCCceEEec-CCeEEE
Q 030130            8 KWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD---K----IPYEVDIDLYDKVDVNESKASVG-LRNIHY   77 (182)
Q Consensus         8 ~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~---~----~~Y~l~leLf~~IdpeeSk~~v~-~rkIei   77 (182)
                      .++.+.+.+.|++.+|+++  +++|++.. +.|.+++.....   .    ..|.-.+.|-..|++++.+-++. ..-+.|
T Consensus         4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I   82 (86)
T cd06475           4 EIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV   82 (86)
T ss_pred             eEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence            5788999999999999985  78899976 599999876311   1    24777888999999999888886 666666


Q ss_pred             EE
Q 030130           78 LV   79 (182)
Q Consensus        78 ~L   79 (182)
                      .|
T Consensus        83 ~l   84 (86)
T cd06475          83 EA   84 (86)
T ss_pred             Ee
Confidence            65

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=95.90  E-value=0.094  Score=37.43  Aligned_cols=70  Identities=14%  Similarity=0.168  Sum_probs=55.5

Q ss_pred             ecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC-CC---CceEEEEeccCCcccCCceEEe-cCCeEEEEEEe
Q 030130           11 QRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP-DK---IPYEVDIDLYDKVDVNESKASV-GLRNIHYLVKK   81 (182)
Q Consensus        11 Qr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~-~~---~~Y~l~leLf~~IdpeeSk~~v-~~rkIei~LkK   81 (182)
                      .+.+.+.|++.+|+.+  +++|++.. +.|++++.-.. .+   ..|.-.+.|-..|+++..+.++ ....+.|+|++
T Consensus         5 e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~   81 (81)
T cd06479           5 TLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR   81 (81)
T ss_pred             CcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence            4677899999999975  78999986 69999986411 11   3677788999999999999987 67778888864

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=95.83  E-value=0.13  Score=36.84  Aligned_cols=70  Identities=11%  Similarity=0.125  Sum_probs=55.4

Q ss_pred             cCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--CC-----CceEEEEeccCCcccCCceEEec-CCeEEEEEEe
Q 030130           12 RTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--DK-----IPYEVDIDLYDKVDVNESKASVG-LRNIHYLVKK   81 (182)
Q Consensus        12 r~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~~-----~~Y~l~leLf~~IdpeeSk~~v~-~rkIei~LkK   81 (182)
                      +.+.+.|++.+|+.+  +++|++.. +.|++++....  ..     ..|.-.+.|-..|+++..+.++. ..-+.|+|.|
T Consensus         5 ~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk   83 (84)
T cd06498           5 EKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR   83 (84)
T ss_pred             CCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence            467889999999985  78999986 59999986421  01     23667788999999999999996 7888999987


Q ss_pred             C
Q 030130           82 A   82 (182)
Q Consensus        82 k   82 (182)
                      +
T Consensus        84 ~   84 (84)
T cd06498          84 K   84 (84)
T ss_pred             C
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>PRK10743 heat shock protein IbpA; Provisional

Probab=95.68  E-value=0.27  Score=38.41  Aligned_cols=75  Identities=9%  Similarity=0.162  Sum_probs=58.8

Q ss_pred             CCeEEEe-cCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--CC----------CceEEEEeccCCcccCCceEE
Q 030130            5 PTVKWAQ-RTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--DK----------IPYEVDIDLYDKVDVNESKAS   69 (182)
Q Consensus         5 P~v~WaQ-r~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~~----------~~Y~l~leLf~~IdpeeSk~~   69 (182)
                      |.+.-++ +.+.+.|++.||+++  +++|.++. +.|++++....  ..          ..|.-.+.|-..|++++  -+
T Consensus        35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~  111 (137)
T PRK10743         35 PPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--AN  111 (137)
T ss_pred             CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CE
Confidence            7889985 899999999999984  78999975 69999986421  11          24666788999999984  55


Q ss_pred             ecCCeEEEEEEeC
Q 030130           70 VGLRNIHYLVKKA   82 (182)
Q Consensus        70 v~~rkIei~LkKk   82 (182)
                      ....-+.|+|.|.
T Consensus       112 ~~dGVL~I~lPK~  124 (137)
T PRK10743        112 LVNGLLYIDLERV  124 (137)
T ss_pred             EeCCEEEEEEeCC
Confidence            6667789999986

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=95.36  E-value=0.21  Score=35.46  Aligned_cols=70  Identities=13%  Similarity=0.105  Sum_probs=53.8

Q ss_pred             ecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--CC-----CceEEEEeccCCcccCCceEEec-CCeEEEEEE
Q 030130           11 QRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--DK-----IPYEVDIDLYDKVDVNESKASVG-LRNIHYLVK   80 (182)
Q Consensus        11 Qr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~~-----~~Y~l~leLf~~IdpeeSk~~v~-~rkIei~Lk   80 (182)
                      .+.+.+.|++.+|+.+  +++|++.. +.|++++....  ..     ..|.-.+.|-..|+++..+.++. ..-+.|+|.
T Consensus         4 ~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P   82 (83)
T cd06478           4 LDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP   82 (83)
T ss_pred             ecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence            4567899999999975  78999986 59999986521  11     23666788999999999888884 677888886


Q ss_pred             e
Q 030130           81 K   81 (182)
Q Consensus        81 K   81 (182)
                      |
T Consensus        83 K   83 (83)
T cd06478          83 R   83 (83)
T ss_pred             C
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=95.20  E-value=0.55  Score=37.02  Aligned_cols=76  Identities=17%  Similarity=0.305  Sum_probs=58.0

Q ss_pred             CCCeEEEec-CCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--CC----------CceEEEEeccCCcccCCceE
Q 030130            4 HPTVKWAQR-TDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--DK----------IPYEVDIDLYDKVDVNESKA   68 (182)
Q Consensus         4 ~P~v~WaQr-~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~~----------~~Y~l~leLf~~IdpeeSk~   68 (182)
                      .|.+.=+++ .+.+.|++.||+++  ++.|.++. +.|++++....  .+          ..|.-.+.|-..|+++  +-
T Consensus        32 ~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A  108 (142)
T PRK11597         32 FPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GA  108 (142)
T ss_pred             CCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cC
Confidence            477888874 67899999999985  78899975 68999986411  11          2466778898999997  45


Q ss_pred             EecCCeEEEEEEeC
Q 030130           69 SVGLRNIHYLVKKA   82 (182)
Q Consensus        69 ~v~~rkIei~LkKk   82 (182)
                      ++...-+.|+|.|.
T Consensus       109 ~~~nGVL~I~lPK~  122 (142)
T PRK11597        109 TFVNGLLHIDLIRN  122 (142)
T ss_pred             EEcCCEEEEEEecc
Confidence            66677789999986

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=95.20  E-value=0.14  Score=44.22  Aligned_cols=64  Identities=20%  Similarity=0.403  Sum_probs=51.3

Q ss_pred             cCCeEEEEEEcCCC---CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEec--CCeEEEEEE
Q 030130           12 RTDRVYITIDLPDA---QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVG--LRNIHYLVK   80 (182)
Q Consensus        12 r~d~V~LtI~l~d~---kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~--~rkIei~Lk   80 (182)
                      +...|.|+|.||++   +++.+++.. ..|.+....    ..|.|+|.|-.+|+++..+-++.  .+.+.|+|.
T Consensus       259 ~p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~----~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp  327 (328)
T PF08190_consen  259 SPEELVVEIELPGVESASDIDLDVSE-DRLSLSSPK----PKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP  327 (328)
T ss_pred             CCceEEEEEECCCcCccceeEEEEeC-CEEEEEeCC----CceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence            35689999999986   578999987 488888653    28999999999999999766654  477888873

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=94.40  E-value=0.38  Score=34.31  Aligned_cols=68  Identities=15%  Similarity=0.084  Sum_probs=52.6

Q ss_pred             CCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--C-----CCceEEEEeccCCcccCCceEEec-CCeEEEEEEe
Q 030130           13 TDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--D-----KIPYEVDIDLYDKVDVNESKASVG-LRNIHYLVKK   81 (182)
Q Consensus        13 ~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~-----~~~Y~l~leLf~~IdpeeSk~~v~-~rkIei~LkK   81 (182)
                      .+...|++.+|+.+  +++|++.. +.|.+++....  .     ...|.-.+.|-..|+++.-+-++. ..-+.|+|.|
T Consensus         6 ~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr   83 (83)
T cd06476           6 DDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR   83 (83)
T ss_pred             CCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence            45778999999975  78999986 59999987521  1     124666788999999999999996 7778888764

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=93.75  E-value=0.64  Score=33.34  Aligned_cols=66  Identities=12%  Similarity=0.249  Sum_probs=48.7

Q ss_pred             CCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC----C-C------CceEEEEeccCCcccCCceEEe-cCCeEEEE
Q 030130           13 TDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP----D-K------IPYEVDIDLYDKVDVNESKASV-GLRNIHYL   78 (182)
Q Consensus        13 ~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~----~-~------~~Y~l~leLf~~IdpeeSk~~v-~~rkIei~   78 (182)
                      .+.+.|++.+|+.+  +++|+++. +.|.+++....    . .      ..|.-.+.|-..|+++..+..+ ...-+.|.
T Consensus         6 ~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~   84 (87)
T cd06481           6 KEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR   84 (87)
T ss_pred             cceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence            46788999999974  78999985 69999987421    1 1      2466678899999999888888 44555665


Q ss_pred             E
Q 030130           79 V   79 (182)
Q Consensus        79 L   79 (182)
                      +
T Consensus        85 ~   85 (87)
T cd06481          85 A   85 (87)
T ss_pred             c
Confidence            4

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=89.72  E-value=4.1  Score=29.38  Aligned_cols=64  Identities=23%  Similarity=0.288  Sum_probs=46.4

Q ss_pred             CCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC-----CC-----CceEEEEeccCCcccCCceEEecCC-eEEE
Q 030130           13 TDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP-----DK-----IPYEVDIDLYDKVDVNESKASVGLR-NIHY   77 (182)
Q Consensus        13 ~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~-----~~-----~~Y~l~leLf~~IdpeeSk~~v~~r-kIei   77 (182)
                      .+.++|++.||+.+  +++|++.. +.|++++....     ..     ..|.-.+.|-..|++++.+-++... .+.|
T Consensus         7 ~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i   83 (87)
T cd06482           7 SSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI   83 (87)
T ss_pred             CCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence            56799999999985  78999985 69999987521     11     1244567888899999887777654 4444

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=89.40  E-value=6.1  Score=28.18  Aligned_cols=66  Identities=14%  Similarity=0.141  Sum_probs=47.4

Q ss_pred             cCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC----CC---CceEEEEeccCCcccCCceEEec-CCeEEEE
Q 030130           12 RTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP----DK---IPYEVDIDLYDKVDVNESKASVG-LRNIHYL   78 (182)
Q Consensus        12 r~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~----~~---~~Y~l~leLf~~IdpeeSk~~v~-~rkIei~   78 (182)
                      +.+.+.|++.||+.+  +++|++.. +.|++++....    .+   ..|.-.+.|-..|+++..+-++. ..-+.|.
T Consensus         5 ~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~   80 (83)
T cd06477           5 GKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE   80 (83)
T ss_pred             CCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence            456788999999975  78999986 69999987521    11   24555677889999988887764 3434443

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
2kmw_A	150	Solution Structure Of At3g03773.1 Protein From Arab		2e-22
1ejf_A	125	Crystal Structure Of The Human Co-Chaperone P23 Len		3e-07

>pdb|2KMW|A Chain A, Solution Structure Of At3g03773.1 Protein From Arabidopsis Thaliana Length = 150

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 71/102 (69%), Gaps = 2/102 (1%)
Query: 2   SRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKV 61
           SR+P V WAQR+D+VY+T+ LPDA+D+ +K EP+G F FSA  G     +E  ++LY K+
Sbjct: 2   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSAL-GAQGERFEFSLELYGKI 60
Query: 62  DVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 103
            + E + +VGLRNI + ++K E  WW+RLLK   KP  ++KV
Sbjct: 61  -MTEYRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKV 101

>pdb|1EJF|A Chain A, Crystal Structure Of The Human Co-Chaperone P23 Length = 125

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 5  PTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVN 64
           + KW  R D V+I   + D++DV +  E + K  FS   G D   +  +IDL+  +D N
Sbjct: 4  ASAKWYDRRDYVFIEFCVEDSKDVNVNFE-KSKLTFSCLGGSDNFKHLNEIDLFHCIDPN 62
Query: 65 ESKASVGLRNIHYLVKKAEN-KWWSRLLKQAGK 96
          +SK     R+I   ++K E+ + W RL K+  K
Sbjct: 63 DSKHKRTDRSILCCLRKGESGQSWPRLTKERAK 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	2e-43
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	9e-40
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	1e-35
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	5e-19
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	1e-09
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	4e-06
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	5e-06
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	3e-04
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	4e-04

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Length = 150

 Score =  140 bits (355), Expect = 2e-43
 Identities = 61/150 (40%), Positives = 84/150 (56%), Gaps = 2/150 (1%)

Query: 2   SRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKV 61
           SR+P V WAQR+D+VY+T+ LPDA+D+ +K EP+G F FSA  G     +E  ++LY K+
Sbjct: 2   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSA-LGAQGERFEFSLELYGKI 60

Query: 62  DVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKPD 121
                K +VGLRNI + ++K E  WW+RLLK   KP  ++KVDW+KW DEDEE   +   
Sbjct: 61  MTEYRK-NVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDEEVNSETAS 119

Query: 122 MDFGDLDFSKMNMGGLDAEAAGGDENDESD 151
            D              D      D     +
Sbjct: 120 DDESAFVNQDSESSDDDGLLYLPDLEKARN 149

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Length = 125

 Score =  130 bits (329), Expect = 9e-40
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 3   RHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVD 62
           +  + KW  R D V+I   + D++DV +  E   K  FS   G D   +  +IDL+  +D
Sbjct: 2   QPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKS-KLTFSCLGGSDNFKHLNEIDLFHCID 60

Query: 63  VNESKASVGLRNIHY-LVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKPD 121
            N+SK     R+I   L K    + W RL K+  K   +L VD++ W D +++  +D  +
Sbjct: 61  PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLN-WLSVDFNNWKDWEDDSDEDMSN 119

Query: 122 MDF 124
            D 
Sbjct: 120 FDR 122

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 134

 Score =  120 bits (302), Expect = 1e-35
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 15/131 (11%)

Query: 2   SRHPTVKWAQRT-------DRVYITIDLPDAQDVKLKLEPEGKFFFS----ATSGPDKIP 50
             +P V WAQR+       + V IT+ + D    +L ++P      +         +   
Sbjct: 4   VINPQVAWAQRSSTTDPERNYVLITVSIADCDAPELTIKPSYIELKAQSKPHVGDENVHH 63

Query: 51  YEVDIDLYDKVDVNESKASVGLRNIHYLV---KKAENKWWSRLLKQAGKPPVFLKVDWDK 107
           Y++ IDLY ++   ++   V     ++L    K  E+++W RL K+  K P ++K D+DK
Sbjct: 64  YQLHIDLYKEIIPEKTMHKVANGQHYFLKLYKKDLESEYWPRLTKEKVKYP-YIKTDFDK 122

Query: 108 WIDEDEEGKDD 118
           W+D DE+ + +
Sbjct: 123 WVDADEQDEVE 133

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 114

 Score = 77.3 bits (190), Expect = 5e-19
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 1   MSRHPTVK--WAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLY 58
           M+    +K  W Q   +V IT+ + + Q   + +E   K   +    P    Y + ++L 
Sbjct: 4   MTHQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELL 63

Query: 59  DKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPP 98
             +   +S   V    I   +KK E   W +L  Q   P 
Sbjct: 64  HPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPT 103

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Length = 92

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 14/82 (17%), Positives = 32/82 (39%)

Query: 9  WAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKA 68
          + Q+ + V +T+         + ++   +        P +  Y +   L+ K+  ++ K 
Sbjct: 7  YYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKY 66

Query: 69 SVGLRNIHYLVKKAENKWWSRL 90
           V    I   + KA+   W+ L
Sbjct: 67 EVLSTKIEICLAKADIITWASL 88

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 11/100 (11%)

Query: 9   WAQRTDRVYITIDLPDAQDV---KLKLEPEGKFFFSATSGPDKIPYEVDID-LYDKVDVN 64
           W Q    V I I L     V    +++    + F       +   Y + ++ L   + V 
Sbjct: 25  WDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVE 84

Query: 65  ESKASVGLRNIH-YLVKKAENKWWSRL------LKQAGKP 97
            S   V    +     KK EN  W  L       K+   P
Sbjct: 85  GSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEKSGP 124

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 16/117 (13%)

Query: 8   KWAQRTDRVYITIDLPD---AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVN 64
            W Q  + + I   +     +  +K+++  +                 +D +L  +VDV+
Sbjct: 8   TWDQELNEINIQFPVTGDADSSAIKIRMVGK-----KICVKNQGEIV-IDGELLHEVDVS 61

Query: 65  ESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDDKPD 121
                +    +   V K  N+WW  LL  +        VD  K + E++       D
Sbjct: 62  SLWWVINGDVVDVNVTKKRNEWWDSLLVGSE------SVDVQK-LAENKHADMSMLD 111

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Length = 124

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 8   KWAQRTDRVYITIDLPD----AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDV 63
            W+Q    + + + +P      + V + L        +      +    ++  L  K++ 
Sbjct: 23  TWSQDYTDLEVRVPVPKHVVKGKQVSVALSS-SSIRVAMLEENGERVL-MEGKLTHKINT 80

Query: 64  NESKASV-GLRNIHYLVKKAENKWWSRLLK 92
             S  S+   + +   + K    WW+ +L+
Sbjct: 81  ESSLWSLEPGKCVLVNLSKVGEYWWNAILE 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	100.0
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	100.0
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	100.0
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	99.89
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	99.88
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	99.86
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	99.86
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	99.86
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	99.85
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	99.84
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	99.78
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	99.77
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	98.44
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	98.21
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	98.21
4fei_A	102	Heat shock protein-related protein; stress respons	98.17
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	97.79
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	97.76
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	97.76
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	97.35
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	97.15
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	96.96
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	96.72
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	96.42
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	96.39
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	90.48

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=100.00  E-value=7.7e-37  Score=240.96  Aligned_cols=115  Identities=50%  Similarity=0.956  Sum_probs=105.5

Q ss_pred             CCCCCCeEEEecCCeEEEEEEcCCCCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEE
Q 030130            1 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVK   80 (182)
Q Consensus         1 Ms~~P~v~WaQr~d~V~LtI~l~d~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~Lk   80 (182)
                      |+++|+|.||||.+.|||||+++++++++|+|++.++|+|++. +.+++.|.|+|+||++|+|+ |+|++++|+|+|+|+
T Consensus         1 m~~~P~~~W~Qt~~~V~ltI~l~~~~~v~V~~~~~~~l~~~~~-~~~~~~y~~~l~L~~~Idpe-S~~~v~~~kIei~L~   78 (150)
T 2kmw_A            1 SSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSAL-GAQGERFEFSLELYGKIMTE-YRKNVGLRNIIFSIQ   78 (150)
T ss_dssp             CEECCCEEEEECSSEEEEEECCSSEEEEEECCCTTEEEEEEEE-TTTTEEEEEEEEBSSCEEEE-EEEEEESSSEEEEEE
T ss_pred             CCcCCcEEEEeCCCEEEEEEEeCCCCceEEEEecCCEEEEEEE-cCCCceEEEEeEhhhccccc-ceEEecCCEEEEEEE
Confidence            8999999999999999999999999999999982259999998 35668899999999999999 999999999999999


Q ss_pred             eCCCccccccccccCCCCCcceecCCccccccccCCC
Q 030130           81 KAENKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKD  117 (182)
Q Consensus        81 Kk~~~~WprL~k~~~K~~~~lkvDwdkw~DEddeee~  117 (182)
                      |+++++|+||++++.|+++|+++||+||+||+|+++.
T Consensus        79 K~e~~~W~rL~k~~~K~~~~lk~Dwdkw~dedeeee~  115 (150)
T 2kmw_A           79 KEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDEEVNS  115 (150)
T ss_dssp             ECCSSCCSCSBSCCSSCCTTEEECSSSSCCSSCCCCS
T ss_pred             ECCCCcCcccccCCcccCccccccchhcCCchhcccc
Confidence            9998999999999989334999999999999988775

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=100.00  E-value=3.9e-35  Score=223.99  Aligned_cols=112  Identities=33%  Similarity=0.604  Sum_probs=99.9

Q ss_pred             CC-CeEEEecCCeEEEEEEcCCCCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeC
Q 030130            4 HP-TVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKA   82 (182)
Q Consensus         4 ~P-~v~WaQr~d~V~LtI~l~d~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk   82 (182)
                      || +|.||||.+.|+|||+++++++++|+|++ ++|+|++.++.+++.|.++|+||++|+|++|+|++.+|+|+|+|+|+
T Consensus         2 ~P~~~~W~Qt~~~V~ltI~~~~~~~~~V~~~~-~~l~~~~~~~~~~~~y~~~l~L~~~I~~e~S~~~v~~~kiei~L~K~   80 (125)
T 1ejf_A            2 QPASAKWYDRRDYVFIEFCVEDSKDVNVNFEK-SKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKG   80 (125)
T ss_dssp             BCCCEEEEECSSEEEEEECCTTEEEEEEEEET-TEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEES
T ss_pred             CCCceeEEeCCCEEEEEEEecCCCceEEEEEC-CEEEEEEEeCCCCceEEEEEEccceeccccCEEEECCCEEEEEEEEC
Confidence            56 99999999999999999999999999997 59999998755677899999999999999999999999999999999


Q ss_pred             CCc-cccccccccCCCCCcceecCCccccccccCCC
Q 030130           83 ENK-WWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKD  117 (182)
Q Consensus        83 ~~~-~WprL~k~~~K~~~~lkvDwdkw~DEddeee~  117 (182)
                      +++ +|+||++++.|++ |+++||+||+||++++++
T Consensus        81 ~~~~~W~rL~~~~~K~~-~lk~D~dkw~de~dd~~~  115 (125)
T 1ejf_A           81 ESGQSWPRLTKERAKLN-WLSVDFNNWKDWEDDSDE  115 (125)
T ss_dssp             STTCCCSSSBSSCCCCT-TEEECTTTCCCCC-----
T ss_pred             CCCCCCCceecCCCccc-cccCChHHhCCccccccc
Confidence            875 9999999998986 999999999998666554

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-35  Score=226.05  Aligned_cols=115  Identities=31%  Similarity=0.600  Sum_probs=96.3

Q ss_pred             CCCCCCeEEEecCCe-------EEEEEEcCCCCceeEEEecCcEEEEEEeeCC-----CCCceEEEEeccCCcccCCceE
Q 030130            1 MSRHPTVKWAQRTDR-------VYITIDLPDAQDVKLKLEPEGKFFFSATSGP-----DKIPYEVDIDLYDKVDVNESKA   68 (182)
Q Consensus         1 Ms~~P~v~WaQr~d~-------V~LtI~l~d~kdvkV~i~~~~~l~fs~~~~~-----~~~~Y~l~leLf~~IdpeeSk~   68 (182)
                      |+++|+|.||||.+.       |||||+++++++++|+|++ ++|+|++.++.     .++.|.|+|+||++|+|++|++
T Consensus         3 ~~~~p~~~W~Q~~~~~~~~k~~V~ltI~~~~~~~~~V~~~~-~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~   81 (134)
T 2cg9_X            3 KVINPQVAWAQRSSTTDPERNYVLITVSIADCDAPELTIKP-SYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMH   81 (134)
T ss_dssp             --------CBCCCEEECCCSSEEEEECCCSSEESCCCCBCS-SEEEECCEEC-------CEEBCEEEECSSCCCSSSEEE
T ss_pred             cccCCCEEEEeCCCCcCCcCCEEEEEEEecCCCceEEEEEC-CEEEEEEecccccCCccCceEEEEEEChhhccccccEE
Confidence            578999999999977       9999999999999999997 59999988742     2478999999999999999999


Q ss_pred             EecCCe-EEEEEEeCC--CccccccccccCCCCCcceecCCccccccccCCC
Q 030130           69 SVGLRN-IHYLVKKAE--NKWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKD  117 (182)
Q Consensus        69 ~v~~rk-Iei~LkKk~--~~~WprL~k~~~K~~~~lkvDwdkw~DEddeee~  117 (182)
                      ++.+|+ |+|+|+|++  ..|||||++++.|++ |+++||+||+||||++++
T Consensus        82 ~v~~~~~vei~L~K~~~~~~~W~rL~k~~~K~~-~lk~D~dkw~dEde~e~~  132 (134)
T 2cg9_X           82 KVANGQHYFLKLYKKDLESEYWPRLTKEKVKYP-YIKTDFDKWVDADEQDEV  132 (134)
T ss_dssp             EECCC--CEEEEEECSSSSCCCSCSSSSCCCCS-SEEECTTTCCCSSSSSCC
T ss_pred             EECCCEEEEEEEEECCCCCCCCCceecCCCccC-cccCCchhcCCccccccc
Confidence            999999 999999998  459999999999987 999999999999998764

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=99.89  E-value=5.5e-23  Score=147.13  Aligned_cols=89  Identities=17%  Similarity=0.188  Sum_probs=81.1

Q ss_pred             CCCeEEEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEe
Q 030130            4 HPTVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKK   81 (182)
Q Consensus         4 ~P~v~WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkK   81 (182)
                      .|+|.||||.+.|+|+|+++++  ++++|+|++ ++|+|++.+. +++.|.++++||++|+|++|+|++.+++|+|+|+|
T Consensus         2 ~~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~-~~l~v~~~~~-~~~~y~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K   79 (92)
T 2xcm_C            2 KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGE-QILSVVIEVP-GEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICLAK   79 (92)
T ss_dssp             CSEEEEEEETTEEEEEEECCSCCGGGEEEEECS-SBEEEEECCT-TSCCEEECCBBSSCBCGGGCEEEECSSCEEEEEEB
T ss_pred             CccccEEeCCCEEEEEEEECCCChHHeEEEEEC-CEEEEEEEcC-CCcEEEEeeEcCCccCchhEEEEEECCEEEEEEEc
Confidence            5899999999999999999995  589999987 5999998863 56789999999999999999999999999999999


Q ss_pred             CCCcccccccccc
Q 030130           82 AENKWWSRLLKQA   94 (182)
Q Consensus        82 k~~~~WprL~k~~   94 (182)
                      +++++|+||++++
T Consensus        80 ~~~~~W~~L~~~k   92 (92)
T 2xcm_C           80 ADIITWASLEHGK   92 (92)
T ss_dssp             SSSCCCSCSBTTC
T ss_pred             CCCCcchhcccCC
Confidence            9988999999764

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.88  E-value=1.8e-22  Score=150.33  Aligned_cols=96  Identities=22%  Similarity=0.322  Sum_probs=80.7

Q ss_pred             CCCC--CCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEE
Q 030130            1 MSRH--PTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIH   76 (182)
Q Consensus         1 Ms~~--P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIe   76 (182)
                      |+++  |+|.|+||.+.|+|+|++++++  +++|+|+. ++|+|++... +++.|.++++||++|+|++|+|++.+++|+
T Consensus         4 m~~~~~~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~-~~l~v~~~~~-~~~~y~~~~~L~~~I~~e~s~~~~~~~~l~   81 (114)
T 1rl1_A            4 MTHQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSE-KELSALVKLP-SGEDYNLKLELLHPIIPEQSTFKVLSTKIE   81 (114)
T ss_dssp             ----CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSS-SCEEEEEECT-TSSEEEEEECBSSCCCGGGEEEEECSSSEE
T ss_pred             CCCCCCCCccEEeCCCEEEEEEEeCCCCHHHCEEEEEc-CEEEEEEEeC-CCcEEEEEeeCCCcCCccccEEEEECCEEE
Confidence            6655  5689999999999999999974  89999987 5999998752 467899999999999999999999999999


Q ss_pred             EEEEeCCCccccccccccCCCC
Q 030130           77 YLVKKAENKWWSRLLKQAGKPP   98 (182)
Q Consensus        77 i~LkKk~~~~WprL~k~~~K~~   98 (182)
                      |+|+|+++++|+||++.+.++.
T Consensus        82 i~L~K~~~~~W~~L~~~~~~~~  103 (114)
T 1rl1_A           82 IKLKKPEAVRWEKLEGQGDVPT  103 (114)
T ss_dssp             EEEECSSCCCCSSSBTTC----
T ss_pred             EEEEcCCCCcCccccccCCccC
Confidence            9999999889999999877653

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.4e-21  Score=149.13  Aligned_cols=90  Identities=19%  Similarity=0.306  Sum_probs=81.0

Q ss_pred             CCCeEEEecCCeEEEEEEcCCC-----CceeEEEecCcEEEEEEeeCCCCCceEEEEe-ccCCcccCCceEEecCCeEEE
Q 030130            4 HPTVKWAQRTDRVYITIDLPDA-----QDVKLKLEPEGKFFFSATSGPDKIPYEVDID-LYDKVDVNESKASVGLRNIHY   77 (182)
Q Consensus         4 ~P~v~WaQr~d~V~LtI~l~d~-----kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~le-Lf~~IdpeeSk~~v~~rkIei   77 (182)
                      .++|.|+||.+.|+|+|+++++     ++++|+|++ ++|.|++.+ .+++.|.|+++ ||++|+|++|+|++.+++|+|
T Consensus        20 ~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~-~~l~v~~~~-~~~~~y~~~~~~L~~~I~~e~S~~~v~~~kVei   97 (127)
T 1x5m_A           20 ISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTE-RSFDLLVKN-LNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLI   97 (127)
T ss_dssp             CCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECS-SEEEEEECS-CSSSCEEEEEECBSSCCCTTTCEEEEETTEEEE
T ss_pred             ccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEc-CEEEEEEEc-CCCCcEEEEhHHhcCccCcccCEEEEeCCEEEE
Confidence            4699999999999999999997     589999997 599999875 34678999996 999999999999999999999


Q ss_pred             EEEeCCCc-cccccccccC
Q 030130           78 LVKKAENK-WWSRLLKQAG   95 (182)
Q Consensus        78 ~LkKk~~~-~WprL~k~~~   95 (182)
                      +|+|++++ +|+||++.+.
T Consensus        98 ~L~K~~~~~~W~~L~~~~~  116 (127)
T 1x5m_A           98 LCRKKVENTRWDYLTQVEK  116 (127)
T ss_dssp             EEECSSSSCCCSSSBHHHH
T ss_pred             EEEECCCCCCCCccccccc
Confidence            99999987 9999997643

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=99.86  E-value=8.3e-22  Score=151.17  Aligned_cols=92  Identities=21%  Similarity=0.350  Sum_probs=74.8

Q ss_pred             CCCCCCeEEEecCCeEEEEEEcC---CCCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEE
Q 030130            1 MSRHPTVKWAQRTDRVYITIDLP---DAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHY   77 (182)
Q Consensus         1 Ms~~P~v~WaQr~d~V~LtI~l~---d~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei   77 (182)
                      |+.+|+|.|+||.+.|+|+|.|+   ..++++|+|++ ++|+|++++    .. .++++||++|+|++|+|++.+++|+|
T Consensus         1 m~~~~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~-~~l~v~~~g----~~-~~~~~L~~~I~~e~S~w~i~~~kv~i   74 (131)
T 2o30_A            1 MPSEAKYTWDQELNEINIQFPVTGDADSSAIKIRMVG-KKICVKNQG----EI-VIDGELLHEVDVSSLWWVINGDVVDV   74 (131)
T ss_dssp             ----CCCEEEEETTEEEEEEECC---CCSCEEEEEET-TEEEEEETT----EE-EEEEEBSSCEEEEEEEEEEETTEEEE
T ss_pred             CCCCCcEEEEecCCEEEEEEECCCCCCccceEEEEEC-CEEEEEECC----Ee-eEccccccccccccCEEEEeCCEEEE
Confidence            89999999999999999999997   35799999998 599999753    34 79999999999999999999999999


Q ss_pred             EEEeCCCccccccccccCCCC
Q 030130           78 LVKKAENKWWSRLLKQAGKPP   98 (182)
Q Consensus        78 ~LkKk~~~~WprL~k~~~K~~   98 (182)
                      +|+|+...||+||+++..++.
T Consensus        75 ~L~K~~~~~W~~L~~~~~~id   95 (131)
T 2o30_A           75 NVTKKRNEWWDSLLVGSESVD   95 (131)
T ss_dssp             EEEESSCCCCSCSBC------
T ss_pred             EEEECCCCCCccccCCCCCCC
Confidence            999996669999999876543

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=99.86  E-value=4.8e-21  Score=145.54  Aligned_cols=93  Identities=14%  Similarity=0.259  Sum_probs=82.0

Q ss_pred             CCCCeEEEecCCeEEEEEEcC----CCCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCe-EEE
Q 030130            3 RHPTVKWAQRTDRVYITIDLP----DAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRN-IHY   77 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~----d~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rk-Iei   77 (182)
                      .+|+|.|+||.+.|+|+|.|+    ..++++|+|++ ++|+|.+++. .+..|.++++||++|+|++|+|++..++ |+|
T Consensus        18 ~~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~-~~l~v~~~~~-~~~~~~~~~~L~~~I~~e~S~w~i~~~k~v~i   95 (124)
T 1wgv_A           18 VRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSS-SSIRVAMLEE-NGERVLMEGKLTHKINTESSLWSLEPGKCVLV   95 (124)
T ss_dssp             CCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECS-SEEEEEEECS-SSEEEEEEEEBSSCBCTTTCEEEECTTSEEEE
T ss_pred             cCCcEEEEEcccEEEEEEEcCCCCCchhheEEEEEc-CEEEEEEEcc-CCCceEEcccccCcCCCcCCEEEEeCCCEEEE
Confidence            478999999999999999999    45799999997 5999998752 3456889999999999999999999876 999


Q ss_pred             EEEeCCCccccccccccCCC
Q 030130           78 LVKKAENKWWSRLLKQAGKP   97 (182)
Q Consensus        78 ~LkKk~~~~WprL~k~~~K~   97 (182)
                      +|+|++..||+||+++..++
T Consensus        96 ~L~K~~~~~W~~L~~~~~~i  115 (124)
T 1wgv_A           96 NLSKVGEYWWNAILEGEEPI  115 (124)
T ss_dssp             EECBSSSCCCSCSBTTSCCC
T ss_pred             EEEECCCCCCcCcccCCCcc
Confidence            99999888999999887654

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.85  E-value=4.3e-21  Score=148.49  Aligned_cols=90  Identities=10%  Similarity=0.207  Sum_probs=80.4

Q ss_pred             CCCeEEEec-CCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCC-----------CCceEEEEeccCCcccCCceEE
Q 030130            4 HPTVKWAQR-TDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPD-----------KIPYEVDIDLYDKVDVNESKAS   69 (182)
Q Consensus         4 ~P~v~WaQr-~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~-----------~~~Y~l~leLf~~IdpeeSk~~   69 (182)
                      .|+|.|||| .+.|+|+|+++++  ++++|+|++ ++|+|++....+           ...|.++++||++|+|++|+|+
T Consensus        19 ~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~-~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~S~~~   97 (134)
T 1wh0_A           19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFRE-QDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFC   97 (134)
T ss_dssp             CCCEEEEEETTTEEEEEEECCSBCTTSCEEEECS-SEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEE
T ss_pred             CCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEEC-CEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchhCEEE
Confidence            589999999 9999999999997  689999987 599999875321           2379999999999999999999


Q ss_pred             ecCCeEEEEEEeCCCcccccccccc
Q 030130           70 VGLRNIHYLVKKAENKWWSRLLKQA   94 (182)
Q Consensus        70 v~~rkIei~LkKk~~~~WprL~k~~   94 (182)
                      +.+++|+|+|+|++..+|+||++..
T Consensus        98 v~~~kIeI~L~K~e~~~W~~L~~~~  122 (134)
T 1wh0_A           98 FTASRIDICLRKRQSQRWGGLEAPA  122 (134)
T ss_dssp             ECSSEEEEEEEESSSCCCSCSBCCC
T ss_pred             EeCCEEEEEEEECCCCccccccccC
Confidence            9999999999999988999999754

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=99.84  E-value=1.5e-20  Score=143.99  Aligned_cols=100  Identities=20%  Similarity=0.350  Sum_probs=87.6

Q ss_pred             CCCCeEEEecCCeEEEEEEcCC---C--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCC-eEE
Q 030130            3 RHPTVKWAQRTDRVYITIDLPD---A--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLR-NIH   76 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d---~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~r-kIe   76 (182)
                      .+|+|.|+||.+.|+|+|.|++   +  ++++|+|++ ++|+|++++    ..|.++++||++|+|++|+|++.++ .|+
T Consensus         6 ~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~-~~l~v~~kg----~~~~~~~~L~~~I~~e~s~w~i~~~k~v~   80 (131)
T 1wfi_A            6 SGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQR-RHLRVGLKG----QPPVVDGELYNEVKVEESSWLIEDGKVVT   80 (131)
T ss_dssp             SCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEET-TEEEEEETT----SCCSBCSCBSSCBCSTTCEEEEETTTEEE
T ss_pred             CCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeC-CEEEEEECC----ceEEEecccccccccccCEEEEcCCCEEE
Confidence            5799999999999999999995   3  699999998 599999753    3567999999999999999999886 699


Q ss_pred             EEEEeCCCc-cccccccccCCCCCcceecCCcc
Q 030130           77 YLVKKAENK-WWSRLLKQAGKPPVFLKVDWDKW  108 (182)
Q Consensus        77 i~LkKk~~~-~WprL~k~~~K~~~~lkvDwdkw  108 (182)
                      |+|+|++++ ||+||+++..++. ..+++..+-
T Consensus        81 i~L~K~~~~~~W~~L~~~~~~id-~~ki~pe~~  112 (131)
T 1wfi_A           81 VHLEKINKMEWWNRLVTSDPEIN-TKKINPENS  112 (131)
T ss_dssp             EEEEBSSSCCCCSCSBSSCCSCC-CSSSSCCCC
T ss_pred             EEEEECCCCCCChhhhcCCCCCC-ccEecCCCC
Confidence            999999875 9999999888876 788888654

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=99.78  E-value=1.6e-18  Score=131.37  Aligned_cols=96  Identities=20%  Similarity=0.397  Sum_probs=81.4

Q ss_pred             CCCCeEEEecCCeEEEEEEcCC-----CCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecC-CeEE
Q 030130            3 RHPTVKWAQRTDRVYITIDLPD-----AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL-RNIH   76 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d-----~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~-rkIe   76 (182)
                      ..|+|.|+||.+.|+|+|.++.     .++++|+|+++ +|+|..++    ..|.++++||++|+|++|+|++.. +.|+
T Consensus        15 ~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~-~l~v~~kg----~~~~~~g~L~~~I~~deS~w~i~~~~~i~   89 (121)
T 3qor_A           15 DLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRR-HLRVGLKG----QPAIIDGELYNEVKVEESSWLIADGAVVT   89 (121)
T ss_dssp             BCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETT-EEEEEETT----SCCSEEEEBSSCBCGGGCEEEEETTTEEE
T ss_pred             cCCCEEEEEccceEEEEEECCCCCcccccceEEEEEcC-EEEEEEcC----cceEEeccccccccccccEEEEcCCCEEE
Confidence            3689999999999999999984     36899999984 99998764    467899999999999999999987 6999


Q ss_pred             EEEEeCCC-ccccccccccCCCCCcceec
Q 030130           77 YLVKKAEN-KWWSRLLKQAGKPPVFLKVD  104 (182)
Q Consensus        77 i~LkKk~~-~~WprL~k~~~K~~~~lkvD  104 (182)
                      |+|.|++. .||+||+++..++. --|++
T Consensus        90 i~L~K~~~~~~W~~L~~~~~~id-~~ki~  117 (121)
T 3qor_A           90 VHLEKINKMEWWSRLVSSDPEIN-TKKIN  117 (121)
T ss_dssp             EEEEBSSSSCCCSCSBTTSCCBC-GGGCC
T ss_pred             EEEEECCCCCCChhhhcCCCCCc-cceeC
Confidence            99999987 49999999876654 33443

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=99.77  E-value=1.1e-18  Score=138.03  Aligned_cols=89  Identities=20%  Similarity=0.385  Sum_probs=78.4

Q ss_pred             CCCCeEEEecCCeEEEEEEcCC---CCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCe-EEEE
Q 030130            3 RHPTVKWAQRTDRVYITIDLPD---AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRN-IHYL   78 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d---~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rk-Iei~   78 (182)
                      .+|+|.|+||.+.|+|+|.|++   .++++|+|++ ++|+|++++    .. .++++||++|+|++|+|++..++ |+|+
T Consensus        12 ~~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~-~~L~v~~kg----~~-~l~g~L~~~I~~eeS~w~i~~~k~v~I~   85 (157)
T 2rh0_A           12 GTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQS-RHVALAVGG----RE-ILKGKLFDSTIADEGTWTLEDRKMVRIV   85 (157)
T ss_dssp             ECSSEEEEECSSEEEEEEECCTTCCGGGEEEEECS-SEEEEEETT----EE-EEEEEBSSCBCGGGCEEEEECCCEEEEE
T ss_pred             CCCcEEEEecCCEEEEEEECCCCCcccceEEEEec-CEEEEEECC----EE-EEeeccccccCccccEEEEcCCcEEEEE
Confidence            4689999999999999999985   4799999998 599999763    23 59999999999999999999877 9999


Q ss_pred             EEeCCC---ccccccccccCCC
Q 030130           79 VKKAEN---KWWSRLLKQAGKP   97 (182)
Q Consensus        79 LkKk~~---~~WprL~k~~~K~   97 (182)
                      |+|++.   .||+||+++..++
T Consensus        86 L~K~~~~~~~~W~~L~k~~~~l  107 (157)
T 2rh0_A           86 LTKTKRDAANCWTSLLESEYAA  107 (157)
T ss_dssp             EEBSSCSTTCCCSEEETTEEEC
T ss_pred             EEEcCCCcCCcChhhhcCCCCC
Confidence            999986   5999999987664

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=98.44  E-value=7.9e-07  Score=68.49  Aligned_cols=82  Identities=15%  Similarity=0.280  Sum_probs=69.1

Q ss_pred             CCCCeEEEecCCeEEEEEEcCCCC----ceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCc-ccCCc--eEEecCCeE
Q 030130            3 RHPTVKWAQRTDRVYITIDLPDAQ----DVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKV-DVNES--KASVGLRNI   75 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d~k----dvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~I-dpeeS--k~~v~~rkI   75 (182)
                      ++|++.=.|..++|+|.|.+|.++    ++.+.+.. .-|.|.+      ..|.|.|.|-++| +.+.+  +|......+
T Consensus         2 iTP~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~~-~~F~F~~------~PYyLRL~LP~~V~e~~~~kA~YD~d~~~~   74 (134)
T 2k8q_A            2 ITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQE-NMIIFHL------SPYYLRLRFPHELIDDERSTAQYDSKDECI   74 (134)
T ss_dssp             CCSEEEEEECSSEEEEEEECCSSCCCSSSCCCEECS-SSEEECS------SSSCEEECCSSCEECCSSCEEEEETTTTEE
T ss_pred             cCceEEEEECCCEEEEEEEcCccccCccccEEEEeC-CEEEEec------CCeEEEecCCCeeecCCCcceeEeccCCEE
Confidence            789999999999999999999876    88888875 4777775      3799999999999 66655  444556889


Q ss_pred             EEEEEeCCCc-cccccc
Q 030130           76 HYLVKKAENK-WWSRLL   91 (182)
Q Consensus        76 ei~LkKk~~~-~WprL~   91 (182)
                      .|+|.|..++ +++-|-
T Consensus        75 ~VtLpK~~~Ge~F~dLD   91 (134)
T 2k8q_A           75 NVKVAKLNKNEYFEDLD   91 (134)
T ss_dssp             EEEEEESSTTCCCSSTT
T ss_pred             EEEEeCCCCCCCCCCcc
Confidence            9999999987 899874

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=98.21  E-value=3.3e-05  Score=55.27  Aligned_cols=81  Identities=14%  Similarity=0.215  Sum_probs=66.8

Q ss_pred             CCCCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC--------------CCceEEEEeccCCcccCCc
Q 030130            3 RHPTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD--------------KIPYEVDIDLYDKVDVNES   66 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~--------------~~~Y~l~leLf~~IdpeeS   66 (182)
                      ..|.+.++++.+.+.|++.||+++  +++|.++. +.|.+++.....              ...|.-.+.|-..|+++..
T Consensus         3 ~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i   81 (100)
T 3gla_A            3 WVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDK-GILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGI   81 (100)
T ss_dssp             SCCCEEEEECSSEEEEEEECTTSCGGGCEEEEET-TEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSC
T ss_pred             ccCcEEEEECCCEEEEEEECCCCCHHHEEEEEEC-CEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHe
Confidence            579999999999999999999974  78999986 699999875211              1147778899999999999


Q ss_pred             eEEecCCeEEEEEEeCCC
Q 030130           67 KASVGLRNIHYLVKKAEN   84 (182)
Q Consensus        67 k~~v~~rkIei~LkKk~~   84 (182)
                      +.++...-+.|+|.|+..
T Consensus        82 ~A~~~~GvL~I~~pK~~~   99 (100)
T 3gla_A           82 TAAGRNGVLEIRIPKRPA   99 (100)
T ss_dssp             EEEEETTEEEEEEEBC--
T ss_pred             EEEEeCCEEEEEEecCCC
Confidence            999988899999999753

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=98.21  E-value=2.5e-05  Score=58.60  Aligned_cols=82  Identities=12%  Similarity=0.241  Sum_probs=68.2

Q ss_pred             CCCCeEEEecCCeEEEEEEcCCCC----ceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCccc-CC--ceEEecCCeE
Q 030130            3 RHPTVKWAQRTDRVYITIDLPDAQ----DVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDV-NE--SKASVGLRNI   75 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d~k----dvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~Idp-ee--Sk~~v~~rkI   75 (182)
                      ++|++.=.|..+.|+|+|.+|.++    ++.+.+.. +-|.|.+      +.|.|.|.|-++|.- +.  ++|......+
T Consensus        16 iTP~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~-~~F~F~~------~PYyLRL~lP~~vved~~~~A~YD~d~g~~   88 (115)
T 3eud_A           16 ITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQE-NMIIFHL------SPYYLRLRFPHELIDDERSTAQYDSKDECI   88 (115)
T ss_dssp             BCCCEEEEECSSEEEEEEECCSCCCCSSSCEEEEET-TEEEEEE------TTEEEEEECSSCEECSTTCEEEEETTTTEE
T ss_pred             eCCcEEEEECCCEEEEEEEcCceecccCccEEEEeC-CEEEEec------CCeEEEEecCcceecCCCcceEEeCCCcEE
Confidence            689999999999999999999754    78899986 4788886      379999999999944 33  3666777899


Q ss_pred             EEEEEeCCCc-cccccc
Q 030130           76 HYLVKKAENK-WWSRLL   91 (182)
Q Consensus        76 ei~LkKk~~~-~WprL~   91 (182)
                      .|+|.|..++ +.+-|-
T Consensus        89 ~v~lpK~~~GE~F~dLD  105 (115)
T 3eud_A           89 NVKVAKLNKNEYFEDLD  105 (115)
T ss_dssp             EEEEEESSTTCCCCCTT
T ss_pred             EEEEcCCcCCCcCCCcc
Confidence            9999999987 777763

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=98.17  E-value=6.2e-05  Score=54.34  Aligned_cols=81  Identities=14%  Similarity=0.223  Sum_probs=68.1

Q ss_pred             CCCCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCCC---------CceEEEEeccCCcccCCceEEec
Q 030130            3 RHPTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPDK---------IPYEVDIDLYDKVDVNESKASVG   71 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~~---------~~Y~l~leLf~~IdpeeSk~~v~   71 (182)
                      ..|.+.|+++.+.+.|++.||+++  +++|.++. +.|.+++......         ..|.-.+.|-..|+++..+.++.
T Consensus         5 ~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~-~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~   83 (102)
T 4fei_A            5 WTPAADWRDAGTHLDLLLDVPGVDAGTLALAEDG-GQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLA   83 (102)
T ss_dssp             CCCCEEEEEETTEEEEEEECTTCCGGGCEEEEET-TEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEE
T ss_pred             ccCcEEEEEcCCEEEEEEECCCCchHhEEEEEEC-CEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEE
Confidence            579999999999999999999984  78999986 6999988752111         14777889999999999999998


Q ss_pred             CCeEEEEEEeCCC
Q 030130           72 LRNIHYLVKKAEN   84 (182)
Q Consensus        72 ~rkIei~LkKk~~   84 (182)
                      ..-+.|+|.|+.+
T Consensus        84 ~GvL~I~lpK~~~   96 (102)
T 4fei_A           84 GGVLTVRFEKLRP   96 (102)
T ss_dssp             TTEEEEEEEBSSC
T ss_pred             CCEEEEEEEccCc
Confidence            8899999999764

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=97.79  E-value=0.00039  Score=51.65  Aligned_cols=81  Identities=12%  Similarity=0.108  Sum_probs=66.4

Q ss_pred             CCCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC--CC--------ceEEEEeccCCcccCCc-eEEe
Q 030130            4 HPTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD--KI--------PYEVDIDLYDKVDVNES-KASV   70 (182)
Q Consensus         4 ~P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~--~~--------~Y~l~leLf~~IdpeeS-k~~v   70 (182)
                      .|.+.++++.+.+.|++.||+++  +++|.++.++.|++++.....  +.        .|.-.+.|-..|+++.. +.++
T Consensus        24 ~P~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~  103 (123)
T 3aab_A           24 YPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKY  103 (123)
T ss_dssp             CSCEEEEEETTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEE
T ss_pred             CCcEEEEEcCCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEE
Confidence            48999999999999999999984  789999751499999875211  11        57777899999999998 8888


Q ss_pred             cCCeEEEEEEeCCC
Q 030130           71 GLRNIHYLVKKAEN   84 (182)
Q Consensus        71 ~~rkIei~LkKk~~   84 (182)
                      ...-+.|+|.|+..
T Consensus       104 ~~GvL~I~lPK~~~  117 (123)
T 3aab_A          104 ENGVLTIRIPIAGT  117 (123)
T ss_dssp             ETTEEEEEEEGGGE
T ss_pred             cCCEEEEEEEcCCC
Confidence            88889999999754

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=97.76  E-value=0.00052  Score=53.29  Aligned_cols=77  Identities=17%  Similarity=0.195  Sum_probs=64.8

Q ss_pred             eEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC---------------CCCceEEEEeccCCcccCCceEE
Q 030130            7 VKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP---------------DKIPYEVDIDLYDKVDVNESKAS   69 (182)
Q Consensus         7 v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~---------------~~~~Y~l~leLf~~IdpeeSk~~   69 (182)
                      +.++++.+.+.|++.||+++  +++|.++. +.|.+++....               ....|.-.+.|-..|+++..+.+
T Consensus        59 vdi~e~~~~~~v~~dlPG~~~edi~V~~~~-~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~  137 (161)
T 4eld_A           59 ISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAK  137 (161)
T ss_dssp             EEEEECSSEEEEEEECTTCCGGGEEEEEET-TEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEE
T ss_pred             eeEEEeCCEEEEEEECCCCChHhEEEEEEC-CEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEE
Confidence            99999999999999999984  78999986 69999987532               11257778899999999998888


Q ss_pred             ecCCeEEEEEEeCCC
Q 030130           70 VGLRNIHYLVKKAEN   84 (182)
Q Consensus        70 v~~rkIei~LkKk~~   84 (182)
                      +...-++|+|.|++.
T Consensus       138 ~~nGvL~I~lpK~~~  152 (161)
T 4eld_A          138 FENGVLSVILPKAES  152 (161)
T ss_dssp             EETTEEEEEEEBCGG
T ss_pred             EECCEEEEEEEcCCC
Confidence            888889999999764

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=97.76  E-value=0.00045  Score=53.33  Aligned_cols=81  Identities=21%  Similarity=0.325  Sum_probs=65.9

Q ss_pred             CCCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC--------------CCceEEEEeccCCcccCCce
Q 030130            4 HPTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD--------------KIPYEVDIDLYDKVDVNESK   67 (182)
Q Consensus         4 ~P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~--------------~~~Y~l~leLf~~IdpeeSk   67 (182)
                      .|.+.|+++.+.+.|++.||+++  +++|.++..+.|++++.....              ...|.-.+.|-..|+++..+
T Consensus        43 ~p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~  122 (151)
T 1gme_A           43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVK  122 (151)
T ss_dssp             GGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCE
T ss_pred             CCceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceE
Confidence            58999999999999999999985  788888422589999864211              12477789999999999988


Q ss_pred             EEecCCeEEEEEEeCCC
Q 030130           68 ASVGLRNIHYLVKKAEN   84 (182)
Q Consensus        68 ~~v~~rkIei~LkKk~~   84 (182)
                      .++...-+.|+|.|+..
T Consensus       123 A~~~nGvL~I~lPK~~~  139 (151)
T 1gme_A          123 AGLENGVLTVTVPKAEV  139 (151)
T ss_dssp             EEEETTEEEEEEECCCC
T ss_pred             EEEECCEEEEEEEccCc
Confidence            88888889999999764

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=97.35  E-value=0.0014  Score=47.23  Aligned_cols=78  Identities=10%  Similarity=0.081  Sum_probs=63.1

Q ss_pred             CeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--CC-----CceEEEEeccCCcccCCceEEe-cCCeE
Q 030130            6 TVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--DK-----IPYEVDIDLYDKVDVNESKASV-GLRNI   75 (182)
Q Consensus         6 ~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~~-----~~Y~l~leLf~~IdpeeSk~~v-~~rkI   75 (182)
                      .+.++++.+.+.|++.||+++  +++|.++. +.|.+++....  .+     .+|.-.+.|-..|+++..+.++ ...-+
T Consensus         3 ~vdi~e~~~~~~v~~dlPG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL   81 (101)
T 2wj5_A            3 MAQVPTDPGYFSVLLDVKHFSPEEISVKVVG-DHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVL   81 (101)
T ss_dssp             CCCCCCCSSCEEEEEECTTSCGGGEEEEEET-TEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEE
T ss_pred             cEEEEEeCCEEEEEEECCCCcHHHeEEEEEC-CEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEE
Confidence            467889999999999999984  78999986 69999987521  11     2377788999999999999999 57889


Q ss_pred             EEEEEeCCC
Q 030130           76 HYLVKKAEN   84 (182)
Q Consensus        76 ei~LkKk~~   84 (182)
                      .|+|.|...
T Consensus        82 ~I~lPK~~~   90 (101)
T 2wj5_A           82 SIQATPASA   90 (101)
T ss_dssp             EEEECBCCC
T ss_pred             EEEEECCCc
Confidence            999998653

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=97.15  E-value=0.0069  Score=43.91  Aligned_cols=79  Identities=14%  Similarity=0.140  Sum_probs=64.2

Q ss_pred             CCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--CC-----CceEEEEeccCCcccCCceEEe-cCCe
Q 030130            5 PTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--DK-----IPYEVDIDLYDKVDVNESKASV-GLRN   74 (182)
Q Consensus         5 P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~~-----~~Y~l~leLf~~IdpeeSk~~v-~~rk   74 (182)
                      .-..++++.+.+.|++.||+++  +++|.+.. +.|.+++....  ..     ..|.-.+.|-..|+++..+.++ ...-
T Consensus         3 g~~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~Gv   81 (106)
T 3l1e_A            3 GISEVRSDRDKFVIFLDVKHFSPEDLTVKVQE-DFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGM   81 (106)
T ss_dssp             CSEEEEECSSEEEEEEECTTSCGGGEEEEEET-TEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSE
T ss_pred             CceEEEEcCCEEEEEEECCCCChHHEEEEEEC-CEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCE
Confidence            3467899999999999999984  88999986 69999986410  11     3477788999999999999999 5788


Q ss_pred             EEEEEEeCCC
Q 030130           75 IHYLVKKAEN   84 (182)
Q Consensus        75 Iei~LkKk~~   84 (182)
                      +.|+|.|+.+
T Consensus        82 L~I~~PK~~~   91 (106)
T 3l1e_A           82 LTFSGPKIPS   91 (106)
T ss_dssp             EEEEEEBCCC
T ss_pred             EEEEEEccCc
Confidence            9999999764

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=96.96  E-value=0.011  Score=41.12  Aligned_cols=71  Identities=13%  Similarity=0.151  Sum_probs=58.2

Q ss_pred             ecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCC-------CCCceEEEEeccCCcccCCceEEec-CCeEEEEEE
Q 030130           11 QRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP-------DKIPYEVDIDLYDKVDVNESKASVG-LRNIHYLVK   80 (182)
Q Consensus        11 Qr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~-------~~~~Y~l~leLf~~IdpeeSk~~v~-~rkIei~Lk   80 (182)
                      ++.+.+.|++.||++  .+++|.++. +.|++++....       ....|.-.+.|-..|+++..+.++. ..-+.|+|.
T Consensus         4 E~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~lP   82 (85)
T 3q9p_A            4 HTADRWRVSLDVNHFAPDELTVKTKD-GVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAP   82 (85)
T ss_dssp             CCCCEEEEEEECTTTCCSEEEEEEET-TEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEEE
T ss_pred             CcCCEEEEEEECCCCChHHEEEEEEC-CEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEEE
Confidence            577899999999997  478999986 69999987521       1235778899999999999999997 788999998


Q ss_pred             eC
Q 030130           81 KA   82 (182)
Q Consensus        81 Kk   82 (182)
                      |.
T Consensus        83 K~   84 (85)
T 3q9p_A           83 MP   84 (85)
T ss_dssp             CC
T ss_pred             cC
Confidence            85

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=96.72  E-value=0.0079  Score=42.15  Aligned_cols=72  Identities=13%  Similarity=0.124  Sum_probs=54.8

Q ss_pred             ecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--CC-----CceEEEEeccCCcccCCceEEe-cCCeEEEEEE
Q 030130           11 QRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--DK-----IPYEVDIDLYDKVDVNESKASV-GLRNIHYLVK   80 (182)
Q Consensus        11 Qr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~~-----~~Y~l~leLf~~IdpeeSk~~v-~~rkIei~Lk   80 (182)
                      ++.+.+.|++.||+++  +++|.+.. +.|.+++....  .+     ..|.-.+.|-..|+++..+.++ ...-+.|+|.
T Consensus         3 ~~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~p   81 (90)
T 2y1y_A            3 MEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGP   81 (90)
T ss_dssp             ---CCEEEEEECTTSCGGGEEEEEET-TEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEEC
T ss_pred             cCCCEEEEEEECCCCcHHHeEEEEEC-CEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEE
Confidence            4567899999999984  78999976 69999987411  11     2477788899999999989999 6788899999


Q ss_pred             eCC
Q 030130           81 KAE   83 (182)
Q Consensus        81 Kk~   83 (182)
                      |..
T Consensus        82 K~~   84 (90)
T 2y1y_A           82 RKQ   84 (90)
T ss_dssp             BC-
T ss_pred             cCC
Confidence            865

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=96.42  E-value=0.019  Score=49.50  Aligned_cols=81  Identities=12%  Similarity=0.077  Sum_probs=67.2

Q ss_pred             CCCeEEEecCC----eEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCC------CCceEEEEeccCCcccCCceEEec
Q 030130            4 HPTVKWAQRTD----RVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPD------KIPYEVDIDLYDKVDVNESKASVG   71 (182)
Q Consensus         4 ~P~v~WaQr~d----~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~------~~~Y~l~leLf~~IdpeeSk~~v~   71 (182)
                      .|.+..+.+.+    .+.|++.||++  .+++|+++. +.|++++.....      ...|.-.+.|-..|+++..+.++.
T Consensus        98 ~p~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~~-~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~  176 (314)
T 2bol_A           98 DFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADK-NKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATIT  176 (314)
T ss_dssp             GGGGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEET-TEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEEC
T ss_pred             CCccceEEcCCCCceEEEEEEECCCCchHHeEEEEEC-CEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEe
Confidence            47788888988    89999999997  488999986 699999875211      136888999999999999999998


Q ss_pred             -CCeEEEEEEeCCCc
Q 030130           72 -LRNIHYLVKKAENK   85 (182)
Q Consensus        72 -~rkIei~LkKk~~~   85 (182)
                       ..-+.|+|.|+.+.
T Consensus       177 ~nGVL~I~lPK~~~~  191 (314)
T 2bol_A          177 TDDVLVIEAPVNEPN  191 (314)
T ss_dssp             SSSEEEEEEEBSSCC
T ss_pred             CCCEEEEEEeccCcc
Confidence             78899999998754

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=96.39  E-value=0.013  Score=46.48  Aligned_cols=77  Identities=12%  Similarity=0.099  Sum_probs=58.9

Q ss_pred             eEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--CC-----CceEEEEeccCCcccCCceEEe-cCCeEE
Q 030130            7 VKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--DK-----IPYEVDIDLYDKVDVNESKASV-GLRNIH   76 (182)
Q Consensus         7 v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~~-----~~Y~l~leLf~~IdpeeSk~~v-~~rkIe   76 (182)
                      +.++++.+.+.|++.||+++  +++|+++. +.|.+++....  +.     .+|.-.+.|-..|+++..+.++ ...-+.
T Consensus        66 ~dv~e~~d~~~v~~dlPG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~  144 (175)
T 2klr_A           66 SEMRLEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLT  144 (175)
T ss_dssp             ---CCCCSEEEEEECCSSCCGGGEEEEEET-TEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEE
T ss_pred             eEEEEcCCeEEEEEECCCCChHHEEEEEEC-CEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEE
Confidence            56778889999999999984  78999986 69999987421  01     2367788899999999999999 578899


Q ss_pred             EEEEeCCC
Q 030130           77 YLVKKAEN   84 (182)
Q Consensus        77 i~LkKk~~   84 (182)
                      |+|.|+..
T Consensus       145 I~lPK~~~  152 (175)
T 2klr_A          145 VNGPRKQV  152 (175)
T ss_dssp             EEEECC--
T ss_pred             EEEECCCC
Confidence            99999754

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=90.48  E-value=1.5  Score=37.56  Aligned_cols=68  Identities=13%  Similarity=0.186  Sum_probs=53.2

Q ss_pred             CeEEEEEEc-CCCC--ceeEEEecCcEEEEEEeeCCCC----------CceEEEEeccCCcccCCceEEecCCeEEEEEE
Q 030130           14 DRVYITIDL-PDAQ--DVKLKLEPEGKFFFSATSGPDK----------IPYEVDIDLYDKVDVNESKASVGLRNIHYLVK   80 (182)
Q Consensus        14 d~V~LtI~l-~d~k--dvkV~i~~~~~l~fs~~~~~~~----------~~Y~l~leLf~~IdpeeSk~~v~~rkIei~Lk   80 (182)
                      +.+.|.+.| |+++  +++|+++. +.|++++......          ..|.-.+.|-..|+++..+.++...-+.|+|.
T Consensus       233 ~~~~v~~~ldPG~~~edi~V~v~~-~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~dGvL~i~~P  311 (314)
T 2bol_A          233 KKIHLELKVDPHFAPKDVKVWAKG-NKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEAP  311 (314)
T ss_dssp             EEEEEEEECCTTCCGGGEEEEESS-SEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEEETTEEEEEEE
T ss_pred             cEEEEEEEcCCCCChHHeEEEEEC-CEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEEeCCEEEEEEe
Confidence            468899999 9874  78999975 6999998763211          13666788999999999888888888899998


Q ss_pred             eC
Q 030130           81 KA   82 (182)
Q Consensus        81 Kk   82 (182)
                      |.
T Consensus       312 k~  313 (314)
T 2bol_A          312 LF  313 (314)
T ss_dssp             EE
T ss_pred             cC
Confidence            74

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d1ejfa_	110	b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien	3e-31
d1rl1a_	92	b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo	8e-20
d1wh0a_	134	b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolas	2e-09
d1wgva_	124	b.15.1.4 (A:) NudC domain containing protein 3, NU	5e-08
d1wfia_	131	b.15.1.4 (A:) Nuclear migration protein nudC {Mous	3e-04

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 3e-31
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 3   RHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVD 62
           +  + KW  R D V+I   + D++DV +  E   K  FS   G D   +  +IDL+  +D
Sbjct: 2   QPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKS-KLTFSCLGGSDNFKHLNEIDLFHCID 60

Query: 63  VNESKASVGLRNIHY-LVKKAENKWWSRLLKQAGKPPVFLKVDWDKWIDED 112
            N+SK     R+I   L K    + W RL K+  K   +L VD++ W D +
Sbjct: 61  PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLN-WLSVDFNNWKDWE 110

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (190), Expect = 8e-20
 Identities = 20/85 (23%), Positives = 34/85 (40%)

Query: 9  WAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKA 68
          W Q   +V IT+ + + Q   + +E   K   +    P    Y + ++L   +   +S  
Sbjct: 7  WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTF 66

Query: 69 SVGLRNIHYLVKKAENKWWSRLLKQ 93
           V    I   +KK E   W +L  Q
Sbjct: 67 KVLSTKIEIKLKKPEAVRWEKLEGQ 91

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 10/100 (10%), Positives = 31/100 (31%), Gaps = 12/100 (12%)

Query: 9   WAQRTDRVYITIDLPDAQDVKLKLE------------PEGKFFFSATSGPDKIPYEVDID 56
           + +  D V + + + +      ++              +G F            +   + 
Sbjct: 25  YEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVK 84

Query: 57  LYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGK 96
           L + ++  +         I   ++K +++ W  L   A +
Sbjct: 85  LRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEAPAAR 124

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (112), Expect = 5e-08
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 8   KWAQRTDRVYITIDLPD----AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDV 63
            W+Q    + + + +P      + V + L         A    +     ++  L  K++ 
Sbjct: 23  TWSQDYTDLEVRVPVPKHVVKGKQVSVALSS--SSIRVAMLEENGERVLMEGKLTHKINT 80

Query: 64  NESKASV-GLRNIHYLVKKAENKWWSRLLK 92
             S  S+   + +   + K    WW+ +L+
Sbjct: 81  ESSLWSLEPGKCVLVNLSKVGEYWWNAILE 110

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Length = 131

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 8   KWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESK 67
           +W Q    + + +    +  +K K             G    P  VD +LY++V V ES 
Sbjct: 11  RWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESS 70

Query: 68  ASV--GLRNIHYLVKKAENKWWSRLLKQAGKP 97
             +  G     +L K  + +WW+RL+    + 
Sbjct: 71  WLIEDGKVVTVHLEKINKMEWWNRLVTSDPEI 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	99.97
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	99.88
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	99.75
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	99.72
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	99.54
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	97.54
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	97.5

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.3e-32  Score=199.89  Aligned_cols=108  Identities=33%  Similarity=0.573  Sum_probs=100.7

Q ss_pred             CCCCeEEEecCCeEEEEEEcCCCCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeC
Q 030130            3 RHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKA   82 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk   82 (182)
                      ++|++.||||.+.|+|+|.++++++++|+|+.+ +|.|++.+...+..|.++++||++|+|++|+|++.+++|+|+|+|+
T Consensus         2 ~p~~~~W~Qt~~~V~i~I~v~~~~~~~v~i~~~-~l~~~~~~~~~~~~y~l~~~L~~~I~~~~s~~~v~~~kiei~L~K~   80 (110)
T d1ejfa_           2 QPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKS-KLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKG   80 (110)
T ss_dssp             BCCCEEEEECSSEEEEEECCTTEEEEEEEEETT-EEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEES
T ss_pred             CCCCcEEEECCCEEEEEEEeCCCCCceEEEEec-eEEEEEEecCCCceEEEEEEcccCcccCccEEEEeCCEEEEEEEEc
Confidence            567899999999999999999999999999984 9999998766677899999999999999999999999999999999


Q ss_pred             CCc-cccccccccCCCCCcceecCCcccccc
Q 030130           83 ENK-WWSRLLKQAGKPPVFLKVDWDKWIDED  112 (182)
Q Consensus        83 ~~~-~WprL~k~~~K~~~~lkvDwdkw~DEd  112 (182)
                      +++ +|+||++++.|++ |+|+|||||+|++
T Consensus        81 ~~~~~W~~L~~~~~K~~-~~kvD~dkw~d~~  110 (110)
T d1ejfa_          81 ESGQSWPRLTKERAKLN-WLSVDFNNWKDWE  110 (110)
T ss_dssp             STTCCCSSSBSSCCCCT-TEEECTTTCCCCC
T ss_pred             CCCCCCCceecCCCCcC-cEEccchheEcCC
Confidence            876 8999999999987 9999999999874

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.4e-23  Score=145.44  Aligned_cols=88  Identities=22%  Similarity=0.327  Sum_probs=80.2

Q ss_pred             CCCeEEEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEe
Q 030130            4 HPTVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKK   81 (182)
Q Consensus         4 ~P~v~WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkK   81 (182)
                      .+||.|+||.+.|+|+|+++++  +++.|+|++ .+|.|++.. .+++.|.++++||++|+|++|+|++.+++|+|+|+|
T Consensus         2 k~ry~W~Qt~~~V~i~i~~~~~~~~~v~v~~~~-~~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~~~~~kiei~L~K   79 (92)
T d1rl1a_           2 KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSE-KELSALVKL-PSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKK   79 (92)
T ss_dssp             CCCEEEEECSSEEEEEECCCSCCGGGEEEECSS-SCEEEEEEC-TTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEEC
T ss_pred             CCceeEEeCCCEEEEEEEeCCCChHheEEEEec-CEEEEEEEc-CCCcEEEEEEEcCcccCchhcEEEEeCCEEEEEEEE
Confidence            4799999999999999999987  478999987 599998875 456789999999999999999999999999999999


Q ss_pred             CCCccccccccc
Q 030130           82 AENKWWSRLLKQ   93 (182)
Q Consensus        82 k~~~~WprL~k~   93 (182)
                      +++++||||+++
T Consensus        80 ~~~~~W~~L~~~   91 (92)
T d1rl1a_          80 PEAVRWEKLEGQ   91 (92)
T ss_dssp             SSCCCCSSSBTT
T ss_pred             CCCCcCcCcccC
Confidence            999999999875

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.1e-18  Score=129.90  Aligned_cols=92  Identities=10%  Similarity=0.198  Sum_probs=79.8

Q ss_pred             CCeEEEecC-CeEEEEEEcCCC--CceeEEEecCcEEEEEEeeC-----------CCCCceEEEEeccCCcccCCceEEe
Q 030130            5 PTVKWAQRT-DRVYITIDLPDA--QDVKLKLEPEGKFFFSATSG-----------PDKIPYEVDIDLYDKVDVNESKASV   70 (182)
Q Consensus         5 P~v~WaQr~-d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~-----------~~~~~Y~l~leLf~~IdpeeSk~~v   70 (182)
                      -+++|||+. +.|+|+|+++++  .+++|+|+. ++|.++....           .....|.++++||++|+|++|+|++
T Consensus        20 ir~dwyq~~~~~V~VtI~~K~v~ke~~~V~f~~-~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~S~~~v   98 (134)
T d1wh0a_          20 VKNDSYEKGPDSVVVHVYVKEICRDTSRVLFRE-QDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCF   98 (134)
T ss_dssp             CCEEEEEETTTEEEEEEECCSBCTTSCEEEECS-SEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEEE
T ss_pred             cccceeecCCCEEEEEEEeCCCchhheEEEEeC-CEEEEEEECCCCcceeeccccCcCeeEEEeeecccccChhHcEEEe
Confidence            488999995 799999999987  478999987 5999987631           1345899999999999999999999


Q ss_pred             cCCeEEEEEEeCCCccccccccccCCC
Q 030130           71 GLRNIHYLVKKAENKWWSRLLKQAGKP   97 (182)
Q Consensus        71 ~~rkIei~LkKk~~~~WprL~k~~~K~   97 (182)
                      .+++|+|+|+|+++.+|++|++...+.
T Consensus        99 ~~~kiei~L~K~~~~~W~~Le~~~~~~  125 (134)
T d1wh0a_          99 TASRIDICLRKRQSQRWGGLEAPAARV  125 (134)
T ss_dssp             CSSEEEEEEEESSSCCCSCSBCCCSCC
T ss_pred             CCCEEEEEEEeCCCCcCcCcccccccc
Confidence            999999999999999999999775543

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.6e-17  Score=121.95  Aligned_cols=92  Identities=14%  Similarity=0.278  Sum_probs=77.0

Q ss_pred             CCCCeEEEecCCeEEEEEEcCC----CCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEE
Q 030130            3 RHPTVKWAQRTDRVYITIDLPD----AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYL   78 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d----~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~   78 (182)
                      .+++|.|+|+.+.|+|+|.|+.    .+++.|+|++ ++|.|+.++ ..+..|.++++||++|+|++|+|++...++.++
T Consensus        18 ~~~~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~-~~l~v~v~~-~~~~~~~l~g~L~~~I~~deS~w~i~~~~~~i~   95 (124)
T d1wgva_          18 VRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSS-SSIRVAMLE-ENGERVLMEGKLTHKINTESSLWSLEPGKCVLV   95 (124)
T ss_dssp             CCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECS-SEEEEEEEC-SSSEEEEEEEEBSSCBCTTTCEEEECTTSEEEE
T ss_pred             CCCCeEEEeECCEEEEEEEeCCCCcchhhEEEEEEe-CEEEEEEec-cCCcceEEeCcccCcccccccEEEEeCCCEEEE
Confidence            3678999999999999999985    2589999998 499999875 345689999999999999999999998776665


Q ss_pred             -EEeCCCccccccccccCC
Q 030130           79 -VKKAENKWWSRLLKQAGK   96 (182)
Q Consensus        79 -LkKk~~~~WprL~k~~~K   96 (182)
                       |+|....+|++|+++..+
T Consensus        96 ~lkK~~~~~W~~L~~ge~~  114 (124)
T d1wgva_          96 NLSKVGEYWWNAILEGEEP  114 (124)
T ss_dssp             EECBSSSCCCSCSBTTSCC
T ss_pred             EEEecCCCcChhhccCCcc
Confidence             555555699999987644

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.9e-14  Score=108.45  Aligned_cols=90  Identities=21%  Similarity=0.407  Sum_probs=75.1

Q ss_pred             CCCCeEEEecCCeEEEEEEcCC---C--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecC-CeEE
Q 030130            3 RHPTVKWAQRTDRVYITIDLPD---A--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL-RNIH   76 (182)
Q Consensus         3 ~~P~v~WaQr~d~V~LtI~l~d---~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~-rkIe   76 (182)
                      ..|.|.|.|+.+.|.|+|.++.   +  +++.|+|++ ++|.|..++    ....+..+||++|+|++|+|++.. +.+.
T Consensus         6 ~~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~-~~l~v~v~~----~~~ll~g~L~~~I~~des~W~ied~~~l~   80 (131)
T d1wfia_           6 SGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQR-RHLRVGLKG----QPPVVDGELYNEVKVEESSWLIEDGKVVT   80 (131)
T ss_dssp             SCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEET-TEEEEEETT----SCCSBCSCBSSCBCSTTCEEEEETTTEEE
T ss_pred             CCCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeC-CEEEEEEcC----CceeecccccCcccccccEEEEeCCCEEE
Confidence            4699999999999999998753   2  689999998 499998754    345677899999999999999975 5689


Q ss_pred             EEEEeCCCc-cccccccccCCC
Q 030130           77 YLVKKAENK-WWSRLLKQAGKP   97 (182)
Q Consensus        77 i~LkKk~~~-~WprL~k~~~K~   97 (182)
                      |+|+|+..+ ||++|+++..++
T Consensus        81 i~L~K~~~~~~W~~l~~gd~~i  102 (131)
T d1wfia_          81 VHLEKINKMEWWNRLVTSDPEI  102 (131)
T ss_dssp             EEEEBSSSCCCCSCSBSSCCSC
T ss_pred             EEEEECCCCccCHHHcCCCCCC
Confidence            999998765 999999987654

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=97.54  E-value=0.00072  Score=50.04  Aligned_cols=81  Identities=21%  Similarity=0.319  Sum_probs=62.8

Q ss_pred             CCCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC----CC----------CceEEEEeccCCcccCCce
Q 030130            4 HPTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP----DK----------IPYEVDIDLYDKVDVNESK   67 (182)
Q Consensus         4 ~P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~----~~----------~~Y~l~leLf~~IdpeeSk   67 (182)
                      .|++.|.++.+.+.|++.||++.  +++|+++..+-|.+++....    .+          ..|.-.+.|-..|+++..+
T Consensus        42 ~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~  121 (150)
T d1gmea_          42 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVK  121 (150)
T ss_dssp             GGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCE
T ss_pred             CCceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeeceeE
Confidence            48899999999999999999984  78888874224567664311    11          1366678999999999988


Q ss_pred             EEecCCeEEEEEEeCCC
Q 030130           68 ASVGLRNIHYLVKKAEN   84 (182)
Q Consensus        68 ~~v~~rkIei~LkKk~~   84 (182)
                      .++...-++|+|.|+..
T Consensus       122 A~~~nGvL~I~lpK~~~  138 (150)
T d1gmea_         122 AGLENGVLTVTVPKAEV  138 (150)
T ss_dssp             EEEETTEEEEEEECCCC
T ss_pred             EEEECCEEEEEEEcCCc
Confidence            88888889999999753

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.50  E-value=0.0012  Score=46.44  Aligned_cols=79  Identities=16%  Similarity=0.181  Sum_probs=64.9

Q ss_pred             CCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC---------------CCCceEEEEeccCCcccCCce
Q 030130            5 PTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP---------------DKIPYEVDIDLYDKVDVNESK   67 (182)
Q Consensus         5 P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~---------------~~~~Y~l~leLf~~IdpeeSk   67 (182)
                      |++..+++.+.+.|.+.||+++  +++|.++. +.|.+++....               ....|...+.|-..|+++..+
T Consensus        11 ~pvdi~e~~~~~~i~~~lPG~~~edi~v~v~~-~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~   89 (115)
T d1shsa_          11 MPISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENAS   89 (115)
T ss_dssp             CCEEEEECSSEEEEEEECTTCCGGGEEEEEET-TEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGGGCE
T ss_pred             CceEEEEcCCEEEEEEECCCCCHHHEEEEEEC-CEEEEEEEeccccccccccEEEEeeecccceEEEEecCCceeecceE
Confidence            5699999999999999999974  78899986 58999886421               113566778899999999999


Q ss_pred             EEecCCeEEEEEEeCCC
Q 030130           68 ASVGLRNIHYLVKKAEN   84 (182)
Q Consensus        68 ~~v~~rkIei~LkKk~~   84 (182)
                      .++...-+.|+|.|+..
T Consensus        90 A~~~nGvL~I~lpK~~~  106 (115)
T d1shsa_          90 AKFENGVLSVILPKAES  106 (115)
T ss_dssp             EEEETTEEEEEEEBCGG
T ss_pred             EEEECCEEEEEEEeCCC
Confidence            99988899999999753