Citrus Sinensis ID: 030168

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGVVSSNNLNITKNSHKNQLQVIDFSVIEADQTDLLGPPPQPVSSCSSEITADELSPSVLDQEETSA
Secondary Structure (PSIPRED)
cccccEEEEcccccccccccccccccccccccccccccccEEEEccccEEEEEEEEEEEcccccccccccccEEEEEEccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccccccccccccccccccccccEEcccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEEcccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKEKKRYFFsnirnesaidndgkckiaagsgywkpvgknrqilASGTKQVVGIRKTLIfcegkrghetKTQWVMHQYHLVAIAtntnltqpvfKMVIIGDWVVYRIFQrkkkpkkrgvvssnnlnitknshknQLQVIDFSvieadqtdllgpppqpvsscsseitadelspsvldqeetsa
Flexible Loop (DISEMBL)
mkekkryffsnirnesaidndgkCKIAAGSGYWKPVGKNRQIlasgtkqvvgIRKTLIFCEGKRGHETKTQWVMHQYHLVAIAtntnltqpVFKMVIIGDWVVYRIFqrkkkpkkrgvvssnnlnitknshknQLQVIDFSVIEADQTDLLGPPPQPVSSCSseitadelspsvldqeetsa
Low Complexity Region (SEG)
MKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGVVSSNNLNITKNSHKNQLQVIDFSVIEADQTDLLGPPPQPVSSCSSEITADELSPSVLDQEETSA
Disordered region (IsUnstruct)
******YFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQR************************QLQVIDFSVIE**************************************
Disordered Region (DISOPRED)
MKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAI***************IGDWVVYRIF***************************************************************************
Disordered Region (DISEMBL)
MKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQR*********VSSNNLNITKNSHKNQLQVIDFSVIEADQTDLL*******************************
Disordered Region (DISPRO)
**EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIA***********MVIIGDWVVYRIFQRKK***********************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGVVSSNNLNITKNSHKNQLQVIDFSVIEADQTDLLGPPPQPVSSCSSEITADELSPSVLDQEETSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
A2YMR0	425	NAC transcription factor	N/A	no	0.593	0.254	0.346	2e-13
A0SPJ3	405	NAC transcription factor	N/A	no	0.593	0.266	0.330	3e-13
Q8H4S4	425	NAC transcription factor	no	no	0.593	0.254	0.338	7e-13
A8MQY1	473	NAC domain-containing pro	no	no	0.406	0.156	0.467	9e-13
A0SPJ6	396	NAC transcription factor	N/A	no	0.593	0.272	0.338	1e-12
A0SPJ8	406	NAC transcription factor	N/A	no	0.593	0.266	0.368	1e-12
A0SPJ4	405	NAC transcription factor	N/A	no	0.604	0.271	0.349	2e-12
D2SMN4	406	NAC transcription factor	N/A	no	0.593	0.266	0.360	2e-12
Q39013	289	NAC domain-containing pro	no	no	0.587	0.370	0.347	2e-12
Q93VY3	297	NAC domain-containing pro	no	no	0.582	0.356	0.341	6e-12

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 16/124 (12%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASG-TKQVVGIRKTLIFCE 61
           E++ YFFS    +    N  +   AA SGYWK  G ++ I+ASG T++ VG++K L+F  
Sbjct: 82  EQEWYFFSP--RDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKVGVKKALVFYR 139

Query: 62  GKRGHETKTQWVMHQYHL-------VAIATNTNLTQPVFK------MVIIGDWVVYRIFQ 108
           GK     KT W+MH+Y L        A+AT      P+         + + DWV+ RI++
Sbjct: 140 GKPPKGVKTNWIMHEYRLTDTSSSAAAVATTRQPPPPITGGSRGAVSLRLDDWVLCRIYK 199

Query: 109 RKKK 112
           +  K
Sbjct: 200 KTNK 203

Transcription factor of the NAC family associated with male fertility.
Oryza sativa subsp. indica (taxid: 39946)

>sp|A0SPJ3|NAMA1_TRIDB NAC transcription factor NAM-A1 OS=Triticum durum GN=NAM-A1 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 16/124 (12%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGT-----KQVVGIRKTL 57
           E++ YFFS    +    N  +   AA SGYWK  G ++ ILASGT     ++ +G++K L
Sbjct: 86  EQEWYFFSP--RDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKAL 143

Query: 58  IFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQP---------VFKMVIIGDWVVYRIFQ 108
           +F  GK     KT W+MH+Y L  ++ +T  ++P             + + DWV+ RI++
Sbjct: 144 VFYRGKPPKGLKTNWIMHEYRLTDVSGSTTTSRPPPPVTGGSRAAASLRLDDWVLCRIYK 203

Query: 109 RKKK 112
           +  K
Sbjct: 204 KINK 207

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321).

Triticum durum (taxid: 4567)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 16/124 (12%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASG-TKQVVGIRKTLIFCE 61
           E++ YFFS    +    N  +   AA SGYWK  G ++ I++SG T++ VG++K L+F  
Sbjct: 82  EQEWYFFSP--RDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFYR 139

Query: 62  GKRGHETKTQWVMHQYHL-------VAIATNTNLTQPVFK------MVIIGDWVVYRIFQ 108
           GK     KT W+MH+Y L        A+AT      P+         + + DWV+ RI++
Sbjct: 140 GKPPKGVKTNWIMHEYRLTDTSSSAAAVATTRRPPPPITGGSKGAVSLRLDDWVLCRIYK 199

Query: 109 RKKK 112
           +  K
Sbjct: 200 KTNK 203

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A8MQY1|NAC68_ARATH NAC domain-containing protein 68 OS=Arabidopsis thaliana GN=NAC68 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 7   YFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQIL-ASGTKQVVGIRKTLIFCEGKRG 65
           YFFS I  E    N  K K   GSG+WKP G +R+I    G   V+GI+KTL++ EGK  
Sbjct: 65  YFFSPI--EYTNPNKMKMKRTTGSGFWKPTGVDREIRDKRGNGVVIGIKKTLVYHEGKSP 122

Query: 66  HETKTQWVMHQYHLVAI 82
           H  +T WVMH+YH+  +
Sbjct: 123 HGVRTPWVMHEYHITCL 139

Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 10/118 (8%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGT-KQVVGIRKTLIFCE 61
           E++ YFFS    +    N  +   AA SGYWK  G ++ ILASG  ++ VG++K L+F  
Sbjct: 81  EQEWYFFS--PRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKKALVFYR 138

Query: 62  GKRGHETKTQWVMHQYHLVAIATNTNLTQPV-------FKMVIIGDWVVYRIFQRKKK 112
           GK     KT W+MH+Y L   +++   ++P           + + DWV+ RI+++  K
Sbjct: 139 GKPPKGLKTNWIMHEYRLTDASSSATTSRPPPVTGGSRSASLRLDDWVLCRIYKKINK 196

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 14/122 (11%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGT---KQVVGIRKTLIF 59
           E + YFFS    + A  N  +   AA SGYWK  G ++ ILAS T   ++ VG++K L+F
Sbjct: 88  EHEWYFFSPRDRKYA--NGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVF 145

Query: 60  CEGKRGHETKTQWVMHQYHLV---AIATNTNLTQPVF------KMVIIGDWVVYRIFQRK 110
             GK     KT W+MH+Y L    A +T T+   PV         + + DWV+ RI+++ 
Sbjct: 146 YRGKPPRGLKTNWIMHEYRLTGASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKKT 205

Query: 111 KK 112
            K
Sbjct: 206 SK 207

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|A0SPJ4|NAMB1_TRIDC NAC transcription factor NAM-B1 OS=Triticum dicoccoides GN=NAM-B1 PE=4 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 16/126 (12%)

Query: 1   MKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGT-----KQVVGIRK 55
           + E++ YFFS    +    N  +   AA SGYWK  G ++ ILASGT     ++ +G++K
Sbjct: 85  IGEQEWYFFS--PRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKK 142

Query: 56  TLIFCEGKRGHETKTQWVMHQYHLVAIA---TNTNLTQPV------FKMVIIGDWVVYRI 106
            L+F  GK     KT W+MH+Y L   +   T TN   PV         + + DWV+ RI
Sbjct: 143 ALVFYRGKPPKGLKTNWIMHEYRLTDASGSTTATNRPPPVTGGSRAAASLRLDDWVLCRI 202

Query: 107 FQRKKK 112
           +++  K
Sbjct: 203 YKKINK 208

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321).

Triticum dicoccoides (taxid: 85692)

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 14/122 (11%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGT---KQVVGIRKTLIF 59
           E + YFFS    +    N  +   AA SGYWK  G ++ ILAS T   ++ VG++K L+F
Sbjct: 88  EHEWYFFSP--RDRKYPNGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVF 145

Query: 60  CEGKRGHETKTQWVMHQYHLV---AIATNTNLTQPVF------KMVIIGDWVVYRIFQRK 110
             GK     KT W+MH+Y L    A +T T+   PV         + + DWV+ RI+++ 
Sbjct: 146 YRGKPPRGLKTNWIMHEYRLTGASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKKT 205

Query: 111 KK 112
            K
Sbjct: 206 SK 207

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare subsp. spontaneum (taxid: 77009)

>sp|Q39013|NAC2_ARATH NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 8/115 (6%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
           EK+ YFFS    +    N  +   +AGSGYWK  G ++ I   G  + VGI+K L+F  G
Sbjct: 60  EKEWYFFSP--RDRKYPNGSRPNRSAGSGYWKATGADKPI---GLPKPVGIKKALVFYAG 114

Query: 63  KRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRG 117
           K     KT W+MH+Y L  +  +    +   +   + DWV+ RI+ +K   ++RG
Sbjct: 115 KAPKGEKTNWIMHEYRLADVDRSVRKKKNSLR---LDDWVLCRIYNKKGATERRG 166

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 11/117 (9%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
           EK+ YFFS    +    N  +    AGSGYWK  G ++ I A G +  VGI+K L+F  G
Sbjct: 67  EKEWYFFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRR--VGIKKALVFYAG 122

Query: 63  KRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGVV 119
           K    TKT W+MH+Y L+  + +   ++       + DWV+ RI+++    +++ V 
Sbjct: 123 KAPKGTKTNWIMHEYRLIEHSRSHGSSK-------LDDWVLCRIYKKTSGSQRQAVT 172

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
255543647	242	transcription factor, putative [Ricinus	0.890	0.669	0.474	5e-34
224055785	244	NAC domain protein, IPR003441 [Populus t	0.884	0.659	0.446	8e-29
224129252	247	NAC domain protein, IPR003441 [Populus t	0.868	0.639	0.436	9e-28
225451537	241	PREDICTED: NAC domain-containing protein	0.637	0.481	0.455	4e-24
296082304	162	unnamed protein product [Vitis vinifera]	0.598	0.672	0.456	8e-23
302399029	263	NAC domain class transcription factor [M	0.840	0.581	0.420	7e-20
358248440	217	uncharacterized protein LOC100815663 [Gl	0.780	0.654	0.396	3e-19
224053533	257	NAC domain protein, IPR003441 [Populus t	0.945	0.669	0.350	5e-17
255540115	237	transcription factor, putative [Ricinus	0.703	0.540	0.392	2e-16
351724343	229	NAC domain protein [Glycine max] gi|1879	0.846	0.672	0.344	5e-16

>gi|255543647|ref|XP_002512886.1| transcription factor, putative [Ricinus communis] gi|223547897|gb|EEF49389.1| transcription factor, putative [Ricinus communis]

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/179 (47%), Positives = 116/179 (64%), Gaps = 17/179 (9%)

Query: 3   EKKRYFFSN-IRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCE 61
           ++KRYFFS  + NES   N    + AAGSGYWKP GK R I+AS    +VG+RKT +FCE
Sbjct: 64  KEKRYFFSRKLGNESENRN----RRAAGSGYWKPTGKGRPIIASFGNHIVGLRKTFLFCE 119

Query: 62  GKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGVVSS 121
           GK  +E+KTQW+MH+Y LV   T  N +Q VFK+  +GDWVVYR+FQ+K++ KK+G +S 
Sbjct: 120 GKNPNESKTQWIMHEYRLVGSGTLLNTSQ-VFKLN-LGDWVVYRVFQKKRRSKKQGTISK 177

Query: 122 NNLNITKNSHKNQLQVIDFSVIEADQTDLLGPPPQPVSSCSSEITADELSPSVLDQEET 180
           ++   +  S       ++F+++E          PQP S CSS IT  E+S + LDQEET
Sbjct: 178 SS---STCSEVMSSSFMEFTMVECSDVG-----PQPSSPCSSGIT--EVSSNGLDQEET 226

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055785|ref|XP_002298652.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222845910|gb|EEE83457.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 110/186 (59%), Gaps = 25/186 (13%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAG---SGYWKPVGKNRQILASGTKQVVGIRKTLIF 59
           ++KRYFFS    +   D   KCK +AG   SGYWKPVGK +QI+ASG+ Q VGIRKTL+F
Sbjct: 64  KEKRYFFSQ---KKLNDFGTKCKRSAGYIPSGYWKPVGKGKQIVASGSNQAVGIRKTLVF 120

Query: 60  CEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGVV 119
            E     +T+TQWVMH+Y LV + T+   TQ       +GDWV   IF RK+KPK   V+
Sbjct: 121 RERNHSSKTRTQWVMHEYCLVGLPTDPKTTQ-------VGDWVANSIFHRKRKPKNHVVM 173

Query: 120 SSNNLNITKNSHKNQLQVIDFSVIE---ADQTDLLGPPPQPVSSCSSEITADELSPSVLD 176
            SN  NI K   +  +++I  S ++      +D  G P Q    CSS +T  E+S +  D
Sbjct: 174 ISNPSNINK---RQNVEIISPSFMDFMMEQSSDEAGAPSQ----CSSGVT--EVSSNEFD 224

Query: 177 QEETSA 182
           QEE S+
Sbjct: 225 QEEISS 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129252|ref|XP_002328928.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222839358|gb|EEE77695.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 108/172 (62%), Gaps = 14/172 (8%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSG---YWKPVGKNRQILASGTKQVVGIRKTLIF 59
           ++KRYFFS  +     D   KCK  AGSG   YWKP+GK +QI+AS + + VG RKTL+F
Sbjct: 64  KEKRYFFSQKKWN---DFGTKCKRTAGSGPSGYWKPIGKGKQIVASDSNKAVGTRKTLVF 120

Query: 60  CEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGVV 119
            E K   +T++QWVMH Y L   AT    TQ    M  +GDWV Y +FQRK+KP+K  V+
Sbjct: 121 KERKHSIKTRSQWVMHGYCLAGSATGPKTTQ----MEEVGDWVAYSVFQRKRKPRKNVVI 176

Query: 120 SS-NNLNITKNSHKNQLQVIDFSVIEADQTDLLGPPPQPVSSCSSEITADEL 170
           S+ +N+N T+N        +DF + ++  +D +G PP P SS  +E++++E+
Sbjct: 177 SNPSNINETRNVEIISPSFMDFMMEQS--SDGVG-PPSPCSSGVTEVSSNEV 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451537|ref|XP_002273649.1| PREDICTED: NAC domain-containing protein 68 [Vitis vinifera] gi|147820260|emb|CAN71479.1| hypothetical protein VITISV_038623 [Vitis vinifera]

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/123 (45%), Positives = 82/123 (66%), Gaps = 7/123 (5%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
           +++RYFFS     S      KC+   G GYWK +GK+ QI+ASG+ + VG+++TL+F EG
Sbjct: 65  KERRYFFS-----SGKGFGNKCRRVTGCGYWKAIGKDIQIVASGSSRAVGMKRTLVFYEG 119

Query: 63  KRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGVVSSN 122
           K G  T+TQWVMH+Y LV + T  + TQ   +   + DWVVYR+FQ++++PK+ GV S  
Sbjct: 120 KLGAGTRTQWVMHEYRLVGLGTAPSSTQKCVEE--MEDWVVYRMFQKRRRPKRHGVSSQP 177

Query: 123 NLN 125
           + N
Sbjct: 178 STN 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082304|emb|CBI21309.3| unnamed protein product [Vitis vinifera]

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 79/116 (68%), Gaps = 7/116 (6%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
           +++RYFFS     S      KC+   G GYWK +GK+ QI+ASG+ + VG+++TL+F EG
Sbjct: 54  KERRYFFS-----SGKGFGNKCRRVTGCGYWKAIGKDIQIVASGSSRAVGMKRTLVFYEG 108

Query: 63  KRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGV 118
           K G  T+TQWVMH+Y LV + T  + TQ   +   + DWVVYR+FQ++++PK+ G+
Sbjct: 109 KLGAGTRTQWVMHEYRLVGLGTAPSSTQKCVEE--MEDWVVYRMFQKRRRPKRHGL 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399029|gb|ADL36809.1| NAC domain class transcription factor [Malus x domestica]

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 105/188 (55%), Gaps = 35/188 (18%)

Query: 5   KRYFFSNIRNESAIDNDG-KCKIAAGSGYWKPVGKNRQIL-ASGTKQVVGIRKTLIFCE- 61
           KRYFF    NE+   N G   K AAG GYWKP+GK +QI+  S + + VGIRKTL+FCE 
Sbjct: 68  KRYFF---HNENMNKNVGINSKRAAGCGYWKPIGKKKQIVNNSESNEAVGIRKTLVFCER 124

Query: 62  ----------GKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKK 111
                     G     T+T+W+MH+Y L  +A+  N TQ + K    G+WVV RIFQ+K+
Sbjct: 125 KRRRCHHHHHGSTNTTTQTRWLMHEYRL--LASQANPTQVLEKES--GNWVVCRIFQKKR 180

Query: 112 KPKKR-----GVVS--SNNLNITKNSHKNQLQVIDFS-VIEADQTDLLGPPPQPVSSCSS 163
           +P +R     GVVS  S+N   T+   ++ +   D S   + D T L  P      SCSS
Sbjct: 181 RPTQRTSDDMGVVSQRSSNCKKTRRLLEDYISADDHSRRSDPDLTTLSSP------SCSS 234

Query: 164 EITADELS 171
           +IT  ELS
Sbjct: 235 DITH-ELS 241

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248440|ref|NP_001239882.1| uncharacterized protein LOC100815663 [Glycine max] gi|255642301|gb|ACU21415.1| unknown [Glycine max]

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 95/179 (53%), Gaps = 37/179 (20%)

Query: 6   RYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRG 65
           RYFFSN  N       G  K  AGSG WK VGK +QI+ S + QV+G+++TL FC+G   
Sbjct: 68  RYFFSNRSN-------GNIKRPAGSGCWKSVGKEKQIIHSESNQVIGMKETLFFCKG--S 118

Query: 66  HETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGVVSSNNLN 125
           HET+TQWVMH+  LVA       + P    + + D+ VYRIFQ+ K   +R        +
Sbjct: 119 HETRTQWVMHELRLVA-------SYPC--QMPVADFAVYRIFQKNKMKTRRS-------H 162

Query: 126 ITKNSHKNQLQ--------VIDFSVIEADQTDLLGPPPQPVSSCSSEITADELSPSVLD 176
             K S  ++LQ          DF+V + +  D+   PP P S C SE    E+S S LD
Sbjct: 163 GKKPSSSSKLQRLVDVKASFFDFTV-DFNHDDI--GPPTPCSPCLSE-GCSEISSSKLD 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053533|ref|XP_002297860.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222845118|gb|EEE82665.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 101/191 (52%), Gaps = 19/191 (9%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
           E++RYFFS    E+   N  +   A GSGYWK  G ++QI+ S   QVVG++KTL+F  G
Sbjct: 64  EQERYFFST--REAKYPNGNRSNRATGSGYWKATGIDKQIVTSKGHQVVGMKKTLVFYRG 121

Query: 63  KRGHETKTQWVMHQYHLVAIAT-------NTNLTQ-PVFKMVIIGDWVVYRIFQRKKKPK 114
           K  H T+T W+MH+Y L +  T       N N TQ PV  +V + +WV+ RIF +K+  K
Sbjct: 122 KPPHGTRTDWIMHEYRLASTETTACNTLKNKNSTQGPV--VVPMENWVLCRIFLKKRGTK 179

Query: 115 KRGVVSSNNLNITKNSHKNQLQVID---FSVIEADQTDLLGPPPQPVSSCSSEITADELS 171
                   N+ +  ++   +L+  +   +  +  ++T  L   P   SS SS IT +   
Sbjct: 180 N----EEENIQVGNDNRLPKLRATEPVFYDFMTKEKTTDLNLAPSSSSSGSSGITEEVSC 235

Query: 172 PSVLDQEETSA 182
               D EE+S+
Sbjct: 236 NESDDHEESSS 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540115|ref|XP_002511122.1| transcription factor, putative [Ricinus communis] gi|223550237|gb|EEF51724.1| transcription factor, putative [Ricinus communis]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 79/140 (56%), Gaps = 12/140 (8%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGT-KQVVGIRKTLIFCE 61
           E++RYFFSN   ES   N  +   A  SGYWK  G  +QI +S +   VVG++KTL+F  
Sbjct: 65  EQERYFFSN--KESKYPNGNRINRATASGYWKATGLEKQIGSSSSGNHVVGMKKTLVFYR 122

Query: 62  GKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRG-VVS 120
           GK  H T+T W+MH+Y LV+  TN+ L Q       +  WV+ RIF + +  ++ G  + 
Sbjct: 123 GKSPHATRTDWIMHEYRLVSAGTNS-LNQ-------LEKWVLCRIFFKNRSTERNGETIQ 174

Query: 121 SNNLNITKNSHKNQLQVIDF 140
           + N N   N+   Q + IDF
Sbjct: 175 TCNDNKVNNAVVIQPRFIDF 194

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724343|ref|NP_001238078.1| NAC domain protein [Glycine max] gi|187940283|gb|ACD39372.1| NAC domain protein [Glycine max]

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 26/180 (14%)

Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
           E++RYFFS    E+   N  +   A  SGYWK  G ++QI+ S   QVVG++KTL+F  G
Sbjct: 64  EQERYFFST--KEAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNQVVGMKKTLVFYRG 121

Query: 63  KRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGVVSSN 122
           K  H ++T W+MH+Y L       N+       V + +WV+ RIF +K+   K G  S  
Sbjct: 122 KPPHGSRTDWIMHEYRL-------NILNASQSHVPMENWVLCRIFLKKRSGAKNGEES-- 172

Query: 123 NLNITKNSHKNQLQVIDFSVIEADQTDLLGPPPQPVSSCSSEITADELSPSVLDQEETSA 182
             N  +NS     +V+ +  +  ++TD         SS +S IT +  S    D EE+S+
Sbjct: 173 --NKVRNS-----KVVFYDFLAQNKTD-------SSSSAASGITHEHES-DEHDHEESSS 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2179877	252	NAC083 "NAC domain containing	0.741	0.535	0.353	4.4e-20
TAIR|locus:2095007	314	NAC058 "NAC domain containing	0.565	0.328	0.356	6.4e-16
TAIR|locus:2159073	206	NAC084 "NAC domain containing	0.554	0.490	0.389	1.3e-15
TAIR|locus:2011531	317	NAC019 "NAC domain containing	0.840	0.482	0.312	5.6e-15
TAIR|locus:2061082	316	NAC038 "NAC domain containing	0.802	0.462	0.318	2.7e-14
TAIR|locus:2090176	317	NAC3 "NAC domain containing pr	0.642	0.369	0.335	8e-14
TAIR|locus:2198225	289	ATAF1 [Arabidopsis thaliana (t	0.890	0.560	0.291	8.4e-14
TAIR|locus:2124014	314	RD26 "RESPONSIVE TO DESICCATIO	0.736	0.426	0.324	1.7e-13
TAIR|locus:2051053	268	NAC041 "NAC domain containing	0.532	0.361	0.372	2.1e-13
TAIR|locus:2117017	302	NAC067 "NAC domain containing	0.406	0.245	0.467	4e-13

TAIR|locus:2179877 NAC083 "NAC domain containing protein 83" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 52/147 (35%), Positives = 81/147 (55%)

Query:     3 EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
             EK+RYFFS    E+   N  +   A GSGYWK  G +++++ S   Q+VG++KTL+F +G
Sbjct:    64 EKERYFFST--REAKYPNGNRSNRATGSGYWKATGIDKRVVTSRGNQIVGLKKTLVFYKG 121

Query:    63 KRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGVVSSN 122
             K  H ++T W+MH+Y L +         P   M    +WV+ RIF +K+   K      +
Sbjct:   122 KPPHGSRTDWIMHEYRLSS--------SPPSSMGPTQNWVLCRIFLKKRAGNKNDDDDGD 173

Query:   123 NLNITKNSHKNQLQVIDFSVIEADQTD 149
             + N+  N++ N    I+  +I  DQTD
Sbjct:   174 SRNLRHNNNNNSSDQIE--IITTDQTD 198

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010150 "leaf senescence" evidence=IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2095007 NAC058 "NAC domain containing protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
 Identities = 41/115 (35%), Positives = 62/115 (53%)

Query:     1 MKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFC 60
             M EK+ YFFS  + +       +   A  +GYWK  GK+++I  SG   +VG++KTL+F 
Sbjct:    56 MGEKEWYFFS--QRDRKYPTGLRTNRATEAGYWKTTGKDKEIYRSGV--LVGMKKTLVFY 111

Query:    61 EGKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKK 115
             +G+     K+ WVMH+Y L +        QP F      +WVV R+F++    KK
Sbjct:   112 KGRAPKGEKSNWVMHEYRLES-------KQP-FNPTNKEEWVVCRVFEKSTAAKK 158

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2159073 NAC084 "NAC domain containing protein 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 46/118 (38%), Positives = 67/118 (56%)

Query:     2 KEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCE 61
             KEK+RYFF   R  S+  N+ + KI++G GYWKP+GK R I+A G  +  GIR+TL F E
Sbjct:    65 KEKQRYFFCKKREVSS--NEHRIKISSGDGYWKPIGKERPIIACG--KTFGIRRTLAFYE 120

Query:    62 GKRGHE--TKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRK-KKPKKR 116
               +      KT+W M +Y L   A+            + G+W VY +++RK  K +K+
Sbjct:   121 TNKSSSYCNKTRWSMTEYCLAGFASAK----------VSGEWAVYNVYERKGSKGRKQ 168

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2011531 NAC019 "NAC domain containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 5.6e-15, P = 5.6e-15
 Identities = 54/173 (31%), Positives = 84/173 (48%)

Query:     3 EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
             EK+ YFFS    +    N  +    AGSGYWK  G ++ I   G  Q VGI+K L+F  G
Sbjct:    67 EKEWYFFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIG 122

Query:    63 KRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKR----GV 118
             K    TKT W+MH+Y L+  +     T+       + DWV+ RI++++   +K+    G+
Sbjct:   123 KAPKGTKTNWIMHEYRLIEPSRRNGSTK-------LDDWVLCRIYKKQSSAQKQVYDNGI 175

Query:   119 V-----SSNNLNITKNSHKNQLQVIDFSVIEADQTDLLGPPPQPVSSCSSEIT 166
                   S+N  + T +S  +   V+D    E D  +     P  +SS   ++T
Sbjct:   176 ANAREFSNNGTSSTTSSSSHFEDVLDSFHQEIDNRNFQFSNPNRISSLRPDLT 228

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2061082 NAC038 "NAC domain containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 2.7e-14, P = 2.7e-14
 Identities = 51/160 (31%), Positives = 84/160 (52%)

Query:     1 MKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFC 60
             M  K+ YFFS +R+        +   A  +GYWK  GK+++I  S T ++VG++KTL+F 
Sbjct:    67 MGGKEWYFFS-LRDRK-YPTGVRTNRATNTGYWKTTGKDKEIFNSTTSELVGMKKTLVFY 124

Query:    61 EGKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGVVS 120
              G+     KT WVMH+Y L + ++     Q         +WVV R+F++ +  KK    S
Sbjct:   125 RGRAPRGEKTCWVMHEYRLHSKSSYRTSKQD--------EWVVCRVFKKTEATKKYISTS 176

Query:   121 SNNLNITKNSHKNQLQVIDFSVIEAD-QTDLLGPPP--QP 157
             S++ +   N+H  +  ++  +    +  +DLL  PP  QP
Sbjct:   177 SSSTSHHHNNH-TRASILSTNNNNPNYSSDLLQLPPHLQP 215

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2090176 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 8.0e-14, P = 8.0e-14
 Identities = 44/131 (33%), Positives = 67/131 (51%)

Query:     3 EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
             EK+ YFFS    +    N  +    AGSGYWK  G ++ I   G +  VGI+K L+F  G
Sbjct:    67 EKEWYFFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGRR--VGIKKALVFYIG 122

Query:    63 KRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGVVSSN 122
             K    TKT W+MH+Y L+  +     T+       + DWV+ RI++++   +K+     N
Sbjct:   123 KAPKGTKTNWIMHEYRLIEPSRRNGSTK-------LDDWVLCRIYKKQTSAQKQAY---N 172

Query:   123 NLNITKNSHKN 133
             NL  +   + N
Sbjct:   173 NLMTSGREYSN 183

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2198225 ATAF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 8.4e-14, P = 8.4e-14
 Identities = 53/182 (29%), Positives = 85/182 (46%)

Query:     3 EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
             EK+ YFFS    +    N  +   +AGSGYWK  G ++ I   G  + VGI+K L+F  G
Sbjct:    60 EKEWYFFSP--RDRKYPNGSRPNRSAGSGYWKATGADKPI---GLPKPVGIKKALVFYAG 114

Query:    63 KRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRG----V 118
             K     KT W+MH+Y L  +  +    +   ++    DWV+ RI+ +K   ++RG    V
Sbjct:   115 KAPKGEKTNWIMHEYRLADVDRSVRKKKNSLRL---DDWVLCRIYNKKGATERRGPPPPV 171

Query:   119 VSSNNLNITKNSHKNQL------QVIDFSVIEADQTDLLGPPPQPVSSCSSEITADELSP 172
             V  + +   K      +      Q  +F+    D +D +       SSCS ++ + E + 
Sbjct:   172 VYGDEIMEEKPKVTEMVMPPPPQQTSEFAYF--DTSDSVPKLHTTDSSCSEQVVSPEFTS 229

Query:   173 SV 174
              V
Sbjct:   230 EV 231

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2124014 RD26 "RESPONSIVE TO DESICCATION 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 50/154 (32%), Positives = 81/154 (52%)

Query:     3 EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
             EK+ YFFS    +    N  +    AGSGYWK  G ++ I A G +  VGI+K L+F  G
Sbjct:    84 EKEWYFFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRR--VGIKKALVFYAG 139

Query:    63 KRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKKRGVV--- 119
             K    TKT W+MH+Y L+  + +   ++       + DWV+ RI+++    +++ V    
Sbjct:   140 KAPKGTKTNWIMHEYRLIEHSRSHGSSK-------LDDWVLCRIYKKTSGSQRQAVTPVQ 192

Query:   120 ---SSNNLNITKNSHKNQLQ-VID-FSVIEADQT 148
                  ++ N + +S  +QL  V+D F  I+ DQ+
Sbjct:   193 ACREEHSTNGSSSSSSSQLDDVLDSFPEIK-DQS 225

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2051053 NAC041 "NAC domain containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 41/110 (37%), Positives = 64/110 (58%)

Query:     3 EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQ-VVGIRKTLIFCE 61
             E + YFFS    E+   N  +   + GSGYWK  G ++QI   G K+ VVG++KTL+F +
Sbjct:    65 ESEMYFFST--REAKYPNGNRSNRSTGSGYWKATGLDKQI---GKKKLVVGMKKTLVFYK 119

Query:    62 GKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKK 111
             GK  + T+T WV+H+Y LV    ++   Q +       +WV+ R+F +K+
Sbjct:   120 GKPPNGTRTNWVLHEYRLVDSQQDSLYGQNM-------NWVLCRVFLKKR 162

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2117017 NAC067 "NAC domain containing protein 67" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 4.0e-13, P = 4.0e-13
 Identities = 36/77 (46%), Positives = 47/77 (61%)

Query:     7 YFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILAS-GTKQVVGIRKTLIFCEGKRG 65
             YFFS I  E    N  K K   GSG+WKP G +R+I    G   V+GI+KTL++ EGK  
Sbjct:    65 YFFSPI--EYTNPNKMKMKRTTGSGFWKPSGVDRKIRDKRGNGVVIGIKKTLVYHEGKSP 122

Query:    66 HETKTQWVMHQYHLVAI 82
             H  +T WVMH+YH+  +
Sbjct:   123 HGVRTPWVMHEYHITCL 139

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	1e-20

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score = 82.3 bits (204), Expect = 1e-20
 Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 2   KEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCE 61
            +++ YFFS    +    N  +   A GSGYWK  GK++ +L+ G  +VVG++KTL+F +
Sbjct: 55  GDREWYFFSPRDRKYP--NGSRTNRATGSGYWKATGKDKPVLSKG-GEVVGMKKTLVFYK 111

Query: 62  GKRGHETKTQWVMHQYHL 79
           G+     KT WVMH+Y L
Sbjct: 112 GRAPKGEKTDWVMHEYRL 129

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	99.91

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=99.91  E-value=2.7e-24  Score=165.03  Aligned_cols=76  Identities=39%  Similarity=0.776  Sum_probs=58.2

Q ss_pred             CCceEEEeecCCCCccccCCCccccccCCeeeeecCCceeEEeCCCceEEEEEEEEEeeeccCCCCcccCeEEEEEEeC
Q 030168            2 KEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLV   80 (182)
Q Consensus         2 ~e~ewYFFs~~rr~~k~~~g~R~~R~t~~GyWK~tG~~k~I~~~~~g~~VG~KktLvFy~gk~~~g~rT~WvMhEY~L~   80 (182)
                      ++.+||||++  ++.++.+|.|.+|++++|+||++|++++|... ++.+||+|++|+||.++.+++.+|+|+||||+|.
T Consensus        54 ~~~~~yFF~~--~~~~~~~~~r~~R~~~~G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   54 GDEEWYFFSP--RKKKYPNGGRPNRVTGGGYWKSTGKEKPIKDP-GGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             -SSEEEEEEE------------S-EEETTEEEEEECEEEEEEE--TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             CCceEEEEEe--cccccCCcccccccccceEEeecccccccccc-cceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            3679999999  77888899999999999999999999999954 8999999999999999888899999999999983

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		1e-12
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		1e-12
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		8e-10

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
           EK+ YFFS    +    N  +    AGSGYWK  G ++ I   G  Q VGI+K L+F  G
Sbjct: 73  EKEWYFFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIG 128
Query: 63  KRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKK 115
           K    TKT W+MH+Y L+  +     T+       + DWV+ RI++++   +K
Sbjct: 129 KAPKGTKTNWIMHEYRLIEPSRRNGSTK-------LDDWVLCRIYKKQSSAQK 174

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 3   EKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEG 62
           EK+ YFFS    +    N  +    AGSGYWK  G ++ I   G  Q VGI+K L+F  G
Sbjct: 70  EKEWYFFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIG 125
Query: 63  KRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKK 115
           K    TKT W+MH+Y L+  +     T+       + DWV+ RI++++   +K
Sbjct: 126 KAPKGTKTNWIMHEYRLIEPSRRNGSTK-------LDDWVLCRIYKKQSSAQK 171

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 7   YFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGH 66
           YFF+    +    N  +   AAG+GYWK  G ++ +   G  + +GI+K L+F  GK   
Sbjct: 72  YFFTP--RDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG--RTLGIKKALVFYAGKAPR 127
Query: 67  ETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRK 110
             KT W+MH+Y L          +     + + DWV+ R++ +K
Sbjct: 128 GVKTDWIMHEYRLADAGRAAAGAK--KGSLRLDDWVLCRLYNKK 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
1ut7_A	171	No apical meristem protein; transcription regulati	3e-28
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	8e-28

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  102 bits (256), Expect = 3e-28
 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 11/115 (9%)

Query: 1   MKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFC 60
             EK+ YFFS    +    N  +    AGSGYWK  G ++ I   G  Q VGI+K L+F 
Sbjct: 68  FGEKEWYFFS--PRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFY 123

Query: 61  EGKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKK 115
            GK    TKT W+MH+Y L+  +     T+         DWV+ RI++++   +K
Sbjct: 124 IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKL-------DDWVLCRIYKKQSSAQK 171

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  101 bits (254), Expect = 8e-28
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 1   MKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFC 60
              ++ YFF+    +    N  +   AAG+GYWK  G ++ +   G  + +GI+K L+F 
Sbjct: 66  FGAREWYFFT--PRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG--RTLGIKKALVFY 121

Query: 61  EGKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKK 115
            GK     KT W+MH+Y L          +     + + DWV+ R++ +K + +K
Sbjct: 122 AGKAPRGVKTDWIMHEYRLADAGRAAAGAKK--GSLRLDDWVLCRLYNKKNEWEK 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=7.4e-38  Score=252.11  Aligned_cols=105  Identities=30%  Similarity=0.674  Sum_probs=82.7

Q ss_pred             CCCceEEEeecCCCCccccCCCccccccCCeeeeecCCceeEEeCCCceEEEEEEEEEeeeccCCCCcccCeEEEEEEeC
Q 030168            1 MKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLV   80 (182)
Q Consensus         1 ~~e~ewYFFs~~rr~~k~~~g~R~~R~t~~GyWK~tG~~k~I~~~~~g~~VG~KktLvFy~gk~~~g~rT~WvMhEY~L~   80 (182)
                      +++.+|||||+  +++||++|.|.+|+|++||||++|++++|.  .+|.+||+||+|+||.|++|++.+|+|+||||+|.
T Consensus        66 ~g~~ewYFFs~--r~~ky~~g~R~nR~t~~G~WkatG~dk~I~--~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~  141 (174)
T 3ulx_A           66 FGAREWYFFTP--RDRKYPNGSRPNRAAGNGYWKATGADKPVA--PRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLA  141 (174)
T ss_dssp             SCSSEEEEEEE--CCC-----CCSCEEETTEEEEECSCCEEEC--CSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEEC
T ss_pred             cCCceEEEEec--cccccCCCCCceeecCCceEccCCCCcEEe--eCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeC
Confidence            46789999999  899999999999999999999999999998  45899999999999999999999999999999999


Q ss_pred             CcccCCCCCccccceeeeCcEEEEEEEEcCC
Q 030168           81 AIATNTNLTQPVFKMVIIGDWVVYRIFQRKK  111 (182)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~VLCRIf~K~~  111 (182)
                      ...........  .....++|||||||+|+.
T Consensus       142 ~~~~~~~~~~~--~~~~~~~wVlCrvf~K~~  170 (174)
T 3ulx_A          142 DAGRAAAGAKK--GSLRLDDWVLCRLYNKKN  170 (174)
T ss_dssp             SCC-------------CCSSEEEEEEEESCC
T ss_pred             CCCCccccccc--CCCCCCCEEEEEEEEcCC
Confidence            87543211000  013578999999999874

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.7e-37  Score=249.45  Aligned_cols=102  Identities=37%  Similarity=0.725  Sum_probs=79.0

Q ss_pred             CCCceEEEeecCCCCccccCCCccccccCCeeeeecCCceeEEeCCCceEEEEEEEEEeeeccCCCCcccCeEEEEEEeC
Q 030168            1 MKEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLV   80 (182)
Q Consensus         1 ~~e~ewYFFs~~rr~~k~~~g~R~~R~t~~GyWK~tG~~k~I~~~~~g~~VG~KktLvFy~gk~~~g~rT~WvMhEY~L~   80 (182)
                      +++++|||||+  +++||++|.|.+|+|++||||++|++++|.  .++.+||+||+|+||.|++|++.+|+|+||||+|.
T Consensus        68 ~g~~ewyFFs~--r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~--~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~  143 (171)
T 1ut7_A           68 FGEKEWYFFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKIIS--TEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLI  143 (171)
T ss_dssp             SCSSEEEEEEE--CCC-------CCEEETTEEEEEEEEEEEEE--ETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEEC
T ss_pred             cCCccEEEEec--cccccCCCCcccccCCCCEEeccCCCceEE--ecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcC
Confidence            46889999999  889999999999999999999999999998  45699999999999999999999999999999999


Q ss_pred             CcccCCCCCccccceeeeCcEEEEEEEEcCCCC
Q 030168           81 AIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKP  113 (182)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~VLCRIf~K~~~~  113 (182)
                      .......       ....++|||||||+|+...
T Consensus       144 ~~~~~~~-------~~~~~~~VlCrv~~k~~~~  169 (171)
T 1ut7_A          144 EPSRRNG-------STKLDDWVLCRIYKKQSSA  169 (171)
T ss_dssp             CCC---------------CCEEEEEEEECC---
T ss_pred             CCccccC-------cccCCCEEEEEEEEcCCCC
Confidence            8753211       1367899999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	5e-21

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 82.8 bits (204), Expect = 5e-21
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 10/106 (9%)

Query: 5   KRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKR 64
           K ++F + R+     N  +    AGSGYWK  G ++ I   G  Q VGI+K L+F  GK 
Sbjct: 71  KEWYFFSPRDRKY-PNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGKA 127

Query: 65  GHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRK 110
              TKT W+MH+Y L+  +     T+       + DWV+ RI++++
Sbjct: 128 PKGTKTNWIMHEYRLIEPSRRNGSTK-------LDDWVLCRIYKKQ 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.2e-34  Score=224.45  Aligned_cols=98  Identities=39%  Similarity=0.745  Sum_probs=77.5

Q ss_pred             CCceEEEeecCCCCccccCCCccccccCCeeeeecCCceeEEeCCCceEEEEEEEEEeeeccCCCCcccCeEEEEEEeCC
Q 030168            2 KEKKRYFFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVA   81 (182)
Q Consensus         2 ~e~ewYFFs~~rr~~k~~~g~R~~R~t~~GyWK~tG~~k~I~~~~~g~~VG~KktLvFy~gk~~~g~rT~WvMhEY~L~~   81 (182)
                      ++++||||++  +..++++|.|.+|+|++||||++|++++|.  .+|.+||+||+|+||+++.+++.+|+|+||||+|..
T Consensus        69 ~~~~wyFft~--~~~k~~~g~r~~R~~g~G~Wk~~g~~~~i~--~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~  144 (166)
T d1ut7a_          69 GEKEWYFFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKIIS--TEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIE  144 (166)
T ss_dssp             CSSEEEEEEE--CCC-------CCEEETTEEEEEEEEEEEEE--ETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECC
T ss_pred             CcceEEEEee--eccccCCCCccccccCCCEecccCCCceEe--cCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCC
Confidence            5789999999  788999999999999999999999999997  578999999999999999999999999999999988


Q ss_pred             cccCCCCCccccceeeeCcEEEEEEEEcC
Q 030168           82 IATNTNLTQPVFKMVIIGDWVVYRIFQRK  110 (182)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~VLCRIf~K~  110 (182)
                      .......       ...++|||||||+|+
T Consensus       145 ~~~~~~~-------~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_         145 PSRRNGS-------TKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             CC---------------CCEEEEEEEECC
T ss_pred             cccccCc-------cccCCEEEEEEEecC
Confidence            6543221       367899999999985