Citrus Sinensis ID: 030192

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHcccccEEcccccccEEcEEEEccEEEEEEEcccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccEEEEEEEcccccHHHHHHHHccccEEEEEEEccEEEEEEEEccEEEEEEEccccccccHHHHHHHHHEEEEEEEEEcccHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccHHHHHHHHcccccccccEEEEEcEccccEcHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFtvwdvggqdkirpLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAnkqdlpnamnaAEITDKLGLHSLRQRHWYIQstcatsgeglyEGLDWLSNNIASKA
Flexible Loop (DISEMBL)
mgltftklFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGlifvvdsndrDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA
Low Complexity Region (SEG)
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA
Disordered region (IsUnstruct)
***TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN******
Disordered Region (DISOPRED)
*GLT*TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS**
Disordered Region (DISEMBL)
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA
Disordered Region (DISPRO)
*GLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q06396	181	ADP-ribosylation factor 1	yes	no	1.0	1.0	0.994	1e-103
O48920	181	ADP-ribosylation factor O	N/A	no	1.0	1.0	0.988	1e-103
P51823	181	ADP-ribosylation factor 2	yes	no	1.0	1.0	0.988	1e-103
P36397	181	ADP-ribosylation factor 1	yes	no	1.0	1.0	0.988	1e-103
P51822	181	ADP-ribosylation factor 1	N/A	no	1.0	1.0	0.983	1e-102
P0DH91	181	ADP-ribosylation factor 2	yes	no	1.0	1.0	0.983	1e-102
Q9LQC8	181	ADP-ribosylation factor 2	yes	no	1.0	1.0	0.983	1e-102
P49076	181	ADP-ribosylation factor O	N/A	no	1.0	1.0	0.972	1e-101
O48649	181	ADP-ribosylation factor 1	N/A	no	1.0	1.0	0.966	1e-101
O23778	181	ADP-ribosylation factor 1	N/A	no	1.0	1.0	0.966	1e-100

>sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3

 Score =  374 bits (960), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/181 (99%), Positives = 181/181 (100%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

Query: 181 A 181
           A
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|O48920|ARF_VIGUN ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3

 Score =  373 bits (957), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/181 (98%), Positives = 181/181 (100%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL+WLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASK 180

Query: 181 A 181
           A
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Vigna unguiculata (taxid: 3917)

>sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/181 (98%), Positives = 181/181 (100%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

Query: 181 A 181
           A
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2

 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/181 (98%), Positives = 180/181 (99%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

Query: 181 A 181
           A
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; required for the sequence-specific vacuolar sorting route to the lytic vacuole, for the ER-to-Golgi transport and for the Golgi-derived transport to the plasma membrane. Involved in the recruitment of COPI and GDAP1 to membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/181 (98%), Positives = 180/181 (99%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEI DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

Query: 181 A 181
           +
Sbjct: 181 S 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Daucus carota (taxid: 4039)

>sp|P0DH91|ARF2B_ARATH ADP-ribosylation factor 2-B OS=Arabidopsis thaliana GN=ARF2-B PE=2 SV=1

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/181 (98%), Positives = 179/181 (98%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180

Query: 181 A 181
           A
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQC8|ARF2A_ARATH ADP-ribosylation factor 2-A OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=2

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/181 (98%), Positives = 179/181 (98%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180

Query: 181 A 181
           A
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|P49076|ARF_MAIZE ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/181 (97%), Positives = 181/181 (100%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGL+SLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATK 180

Query: 181 A 181
           +
Sbjct: 181 S 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Zea mays (taxid: 4577)

>sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3

 Score =  365 bits (937), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/181 (96%), Positives = 178/181 (98%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+FTKL  RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV EARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI+SK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSK 180

Query: 181 A 181
           A
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Salix bakko (taxid: 72444)

>sp|O23778|ARF1_CATRO ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/181 (96%), Positives = 179/181 (98%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILY+LKLGEIVTTIPTIGFNVETVEY+ 
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQY 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDK GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

Query: 181 A 181
           A
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Catharanthus roseus (taxid: 4058)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
357495837	248	ADP-ribosylation factor [Medicago trunca	1.0	0.729	1.0	1e-103
20161472	376	ADP-ribosylation factor [Oryza sativa Ja	0.994	0.478	0.994	1e-102
125546170	354	hypothetical protein OsI_14032 [Oryza sa	1.0	0.511	0.983	1e-102
357485863	454	ADP-ribosylation factor [Medicago trunca	1.0	0.398	0.994	1e-102
357495841	181	ADP-ribosylation factor [Medicago trunca	1.0	1.0	1.0	1e-102
310006471	181	ADP-ribosylation factor [Actinidia chine	1.0	1.0	0.994	1e-102
296089819	591	unnamed protein product [Vitis vinifera]	1.0	0.306	0.988	1e-102
224122864	181	predicted protein [Populus trichocarpa]	1.0	1.0	0.994	1e-102
449446863	368	PREDICTED: ADP-ribosylation factor 1-lik	1.0	0.491	0.994	1e-102
115440639	181	Os01g0813400 [Oryza sativa Japonica Grou	1.0	1.0	0.994	1e-102

>gi|357495837|ref|XP_003618207.1| ADP-ribosylation factor [Medicago truncatula] gi|355493222|gb|AES74425.1| ADP-ribosylation factor [Medicago truncatula]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/181 (100%), Positives = 181/181 (100%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 68  MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 127

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 128 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 187

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 188 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 247

Query: 181 A 181
           A
Sbjct: 248 A 248

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20161472|dbj|BAB90396.1| ADP-ribosylation factor [Oryza sativa Japonica Group]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/180 (99%), Positives = 180/180 (100%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 179 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 238

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 239 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 298

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 299 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 358

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125546170|gb|EAY92309.1| hypothetical protein OsI_14032 [Oryza sativa Indica Group]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/181 (98%), Positives = 181/181 (100%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASK 180

Query: 181 A 181
           +
Sbjct: 181 S 181

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485863|ref|XP_003613219.1| ADP-ribosylation factor [Medicago truncatula] gi|355514554|gb|AES96177.1| ADP-ribosylation factor [Medicago truncatula]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/181 (99%), Positives = 181/181 (100%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 274 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 333

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 334 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 393

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 394 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 453

Query: 181 A 181
           A
Sbjct: 454 A 454

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495841|ref|XP_003618209.1| ADP-ribosylation factor [Medicago truncatula] gi|449450087|ref|XP_004142795.1| PREDICTED: ADP-ribosylation factor 1-like isoform 1 [Cucumis sativus] gi|449450089|ref|XP_004142796.1| PREDICTED: ADP-ribosylation factor 1-like isoform 2 [Cucumis sativus] gi|449483765|ref|XP_004156684.1| PREDICTED: ADP-ribosylation factor 1-like isoform 1 [Cucumis sativus] gi|449483767|ref|XP_004156685.1| PREDICTED: ADP-ribosylation factor 1-like isoform 2 [Cucumis sativus] gi|39653273|gb|AAR29293.1| ADP-ribosylation factor [Medicago sativa] gi|56311394|emb|CAI29265.1| ADP-ribosylation factor 1 [Medicago truncatula] gi|355493224|gb|AES74427.1| ADP-ribosylation factor [Medicago truncatula] gi|359770107|gb|AEV66152.1| ADP-ribosylation factor [Arachis hypogaea] gi|388508094|gb|AFK42113.1| unknown [Medicago truncatula] gi|388513351|gb|AFK44737.1| unknown [Lotus japonicus]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/181 (100%), Positives = 181/181 (100%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

Query: 181 A 181
           A
Sbjct: 181 A 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310006471|gb|ADP00406.1| ADP-ribosylation factor [Actinidia chinensis]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/181 (99%), Positives = 181/181 (100%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA+
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAI 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

Query: 181 A 181
           A
Sbjct: 181 A 181

Source: Actinidia chinensis

Species: Actinidia chinensis

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089819|emb|CBI39638.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/181 (98%), Positives = 181/181 (100%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 411 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 470

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 471 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 530

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 531 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 590

Query: 181 A 181
           A
Sbjct: 591 A 591

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122864|ref|XP_002318935.1| predicted protein [Populus trichocarpa] gi|224124598|ref|XP_002330063.1| predicted protein [Populus trichocarpa] gi|356571535|ref|XP_003553932.1| PREDICTED: ADP-ribosylation factor isoform 1 [Glycine max] gi|356571537|ref|XP_003553933.1| PREDICTED: ADP-ribosylation factor isoform 2 [Glycine max] gi|356571539|ref|XP_003553934.1| PREDICTED: ADP-ribosylation factor isoform 3 [Glycine max] gi|118482509|gb|ABK93177.1| unknown [Populus trichocarpa] gi|118483518|gb|ABK93657.1| unknown [Populus trichocarpa] gi|118487697|gb|ABK95673.1| unknown [Populus trichocarpa] gi|222857311|gb|EEE94858.1| predicted protein [Populus trichocarpa] gi|222871488|gb|EEF08619.1| predicted protein [Populus trichocarpa]

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/181 (99%), Positives = 181/181 (100%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

Query: 181 A 181
           A
Sbjct: 181 A 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446863|ref|XP_004141190.1| PREDICTED: ADP-ribosylation factor 1-like [Cucumis sativus]

 Score =  374 bits (960), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/181 (99%), Positives = 180/181 (99%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 185 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 244

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 245 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 304

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 305 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 364

Query: 181 A 181
            
Sbjct: 365 V 365

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115440639|ref|NP_001044599.1| Os01g0813400 [Oryza sativa Japonica Group] gi|110825705|sp|Q06396.3|ARF1_ORYSJ RecName: Full=ADP-ribosylation factor 1; AltName: Full=13 kDa cold-induced protein gi|55297503|dbj|BAD68219.1| ADP-ribosylation factor [Oryza sativa Japonica Group] gi|56785043|dbj|BAD82682.1| ADP-ribosylation factor [Oryza sativa Japonica Group] gi|113534130|dbj|BAF06513.1| Os01g0813400 [Oryza sativa Japonica Group] gi|215692811|dbj|BAG88255.1| unnamed protein product [Oryza sativa Japonica Group] gi|215694498|dbj|BAG89491.1| unnamed protein product [Oryza sativa Japonica Group] gi|218189262|gb|EEC71689.1| hypothetical protein OsI_04181 [Oryza sativa Indica Group] gi|222619437|gb|EEE55569.1| hypothetical protein OsJ_03844 [Oryza sativa Japonica Group]

 Score =  374 bits (960), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/181 (99%), Positives = 181/181 (100%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

Query: 181 A 181
           A
Sbjct: 181 A 181

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
UNIPROTKB|P51823	181	ARF "ADP-ribosylation factor 2	1.0	1.0	0.988	1.6e-93
TAIR|locus:2019948	181	ARFA1F "ADP-ribosylation facto	1.0	1.0	0.988	2.7e-93
TAIR|locus:2065114	181	ARF1A1C [Arabidopsis thaliana	1.0	1.0	0.988	4.3e-93
TAIR|locus:2222677	188	ARFA1B "ADP-ribosylation facto	0.994	0.957	0.988	5.5e-93
TAIR|locus:2028926	181	ARF1 "ADP-ribosylation factor	1.0	1.0	0.983	7e-93
TAIR|locus:2026780	181	ARFA1D [Arabidopsis thaliana (	1.0	1.0	0.983	7e-93
TAIR|locus:2098063	181	ARFA1E "ADP-ribosylation facto	1.0	1.0	0.977	1.9e-92
UNIPROTKB|P84081	181	ARF2 "ADP-ribosylation factor	0.994	0.994	0.888	5e-83
UNIPROTKB|J9NWP6	181	LOC480487 "Uncharacterized pro	0.994	0.994	0.888	5e-83
MGI|MGI:99595	181	Arf2 "ADP-ribosylation factor	0.994	0.994	0.888	5e-83

UNIPROTKB|P51823 ARF "ADP-ribosylation factor 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 179/181 (98%), Positives = 181/181 (100%)

Query:     1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
             MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
             ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
             LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

Query:   181 A 181
             A
Sbjct:   181 A 181

GO:0006471 "protein ADP-ribosylation" evidence=IEP;ISS

GO:0006886 "intracellular protein transport" evidence=IEP;ISS

GO:0016192 "vesicle-mediated transport" evidence=IEP;ISS

TAIR|locus:2019948 ARFA1F "ADP-ribosylation factor A1F" [Arabidopsis thaliana (taxid:3702)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 179/181 (98%), Positives = 180/181 (99%)

Query:     1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
             MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
             ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
             LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

Query:   181 A 181
             A
Sbjct:   181 A 181

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005507 "copper ion binding" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2065114 ARF1A1C [Arabidopsis thaliana (taxid:3702)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 179/181 (98%), Positives = 180/181 (99%)

Query:     1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
             MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
             ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
             LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

Query:   181 A 181
             A
Sbjct:   181 A 181

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0005798 "Golgi-associated vesicle" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2222677 ARFA1B "ADP-ribosylation factor A1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 178/180 (98%), Positives = 179/180 (99%)

Query:     1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
             MGL FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGLNFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
             ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
             LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2028926 ARF1 "ADP-ribosylation factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 178/181 (98%), Positives = 179/181 (98%)

Query:     1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
             MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
             ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
             LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180

Query:   181 A 181
             A
Sbjct:   181 A 181

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=RCA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2026780 ARFA1D [Arabidopsis thaliana (taxid:3702)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 178/181 (98%), Positives = 179/181 (98%)

Query:     1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
             MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
             ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
             LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180

Query:   181 A 181
             A
Sbjct:   181 A 181

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2098063 ARFA1E "ADP-ribosylation factor A1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
 Identities = 177/181 (97%), Positives = 180/181 (99%)

Query:     1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
             MGL+F KLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGLSFGKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
             ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
             LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

Query:   181 A 181
             A
Sbjct:   181 A 181

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

UNIPROTKB|P84081 ARF2 "ADP-ribosylation factor 2" [Bos taurus (taxid:9913)]

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 160/180 (88%), Positives = 168/180 (93%)

Query:     1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
             MG  F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
             ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120

Query:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
             LLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct:   121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|J9NWP6 LOC480487 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 160/180 (88%), Positives = 168/180 (93%)

Query:     1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
             MG  F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
             ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120

Query:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
             LLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct:   121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKTQ 180

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

MGI|MGI:99595 Arf2 "ADP-ribosylation factor 2" [Mus musculus (taxid:10090)]

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 160/180 (88%), Positives = 168/180 (93%)

Query:     1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
             MG  F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
             ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120

Query:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
             LLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct:   121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O48920	ARF_VIGUN	No assigned EC number	0.9889	1.0	1.0	N/A	no
P51644	ARF4_XENLA	No assigned EC number	0.8222	0.9944	1.0	N/A	no
O00909	ARF1_DICDI	No assigned EC number	0.8563	1.0	0.9945	yes	no
P51643	ARF1_XENLA	No assigned EC number	0.8833	0.9944	0.9944	N/A	no
P91924	ARF_DUGJA	No assigned EC number	0.8729	1.0	0.9890	N/A	no
P36397	ARF1_ARATH	No assigned EC number	0.9889	1.0	1.0	yes	no
Q61LA8	ARF12_CAEBR	No assigned EC number	0.8674	1.0	1.0	N/A	no
Q7RVM2	ARF_NEUCR	No assigned EC number	0.8757	0.9779	0.9567	N/A	no
Q3SZF2	ARF4_BOVIN	No assigned EC number	0.8222	0.9944	1.0	no	no
P61210	ARF1_LOCMI	No assigned EC number	0.8770	0.9889	0.9835	N/A	no
P84082	ARF2_RAT	No assigned EC number	0.8888	0.9944	0.9944	yes	no
P84083	ARF5_RAT	No assigned EC number	0.8111	0.9944	1.0	no	no
P84080	ARF1_BOVIN	No assigned EC number	0.8833	0.9944	0.9944	yes	no
P84081	ARF2_BOVIN	No assigned EC number	0.8888	0.9944	0.9944	yes	no
Q5R5P7	ARF3_PONAB	No assigned EC number	0.8722	0.9944	0.9944	yes	no
Q10943	ARF12_CAEEL	No assigned EC number	0.8618	1.0	1.0	no	no
P84084	ARF5_MOUSE	No assigned EC number	0.8111	0.9944	1.0	no	no
P22274	ARF_CANAL	No assigned EC number	0.8258	0.9834	0.9944	N/A	no
P51822	ARF1_DAUCA	No assigned EC number	0.9834	1.0	1.0	N/A	no
P51823	ARF2_ORYSJ	No assigned EC number	0.9889	1.0	1.0	yes	no
P51821	ARF1_CHLRE	No assigned EC number	0.9611	0.9944	0.9944	N/A	no
P51824	ARF1_SOLTU	No assigned EC number	0.9444	0.9944	0.9137	N/A	no
P84077	ARF1_HUMAN	No assigned EC number	0.8833	0.9944	0.9944	yes	no
P36579	ARF1_SCHPO	No assigned EC number	0.8555	0.9944	1.0	yes	no
P84085	ARF5_HUMAN	No assigned EC number	0.8111	0.9944	1.0	no	no
P61209	ARF1_DROME	No assigned EC number	0.8770	0.9889	0.9835	yes	no
P84079	ARF1_RAT	No assigned EC number	0.8833	0.9944	0.9944	yes	no
P84078	ARF1_MOUSE	No assigned EC number	0.8833	0.9944	0.9944	yes	no
P18085	ARF4_HUMAN	No assigned EC number	0.8111	0.9944	1.0	no	no
P0CM17	ARF_CRYNB	No assigned EC number	0.8618	1.0	0.9945	N/A	no
P0CM16	ARF_CRYNJ	No assigned EC number	0.8618	1.0	0.9945	yes	no
Q06396	ARF1_ORYSJ	No assigned EC number	0.9944	1.0	1.0	yes	no
P40945	ARF2_DROME	No assigned EC number	0.8444	0.9944	1.0	no	no
P61205	ARF3_MOUSE	No assigned EC number	0.8722	0.9944	0.9944	no	no
P61204	ARF3_HUMAN	No assigned EC number	0.8722	0.9944	0.9944	yes	no
P61207	ARF3_TAKRU	No assigned EC number	0.8722	0.9944	0.9944	N/A	no
P61206	ARF3_RAT	No assigned EC number	0.8722	0.9944	0.9944	no	no
O48649	ARF1_SALBA	No assigned EC number	0.9668	1.0	1.0	N/A	no
Q8BSL7	ARF2_MOUSE	No assigned EC number	0.8888	0.9944	0.9944	yes	no
Q5RCF1	ARF4_PONAB	No assigned EC number	0.8111	0.9944	1.0	no	no
Q9LQC8	ARF2A_ARATH	No assigned EC number	0.9834	1.0	1.0	yes	no
P49076	ARF_MAIZE	No assigned EC number	0.9723	1.0	1.0	N/A	no
Q4R5P2	ARF1_MACFA	No assigned EC number	0.8833	0.9944	0.9944	N/A	no
P34727	ARF_AJECA	No assigned EC number	0.8531	0.9779	0.9672	N/A	no
Q5E9I6	ARF3_BOVIN	No assigned EC number	0.8722	0.9944	0.9944	no	no
P49702	ARF5_CHICK	No assigned EC number	0.8	0.9944	1.0	no	no
P0DH91	ARF2B_ARATH	No assigned EC number	0.9834	1.0	1.0	yes	no
Q75A26	ARF_ASHGO	No assigned EC number	0.8232	1.0	1.0	yes	no
P61751	ARF4_RAT	No assigned EC number	0.8111	0.9944	1.0	no	no
O23778	ARF1_CATRO	No assigned EC number	0.9668	1.0	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	OsJ_13076	Os03g0811900 (424 aa)
		(Oryza sativa Indica)
Predicted Functional Partners:
	ossap2	Os12g0637100 (486 aa)							•		0.450
	OsI_37907	Os12g0236500 (478 aa)							•		0.450
	OsI_35998	Adenosylhomocysteinase (EC 3.3.1.1) (500 aa)							•		0.450
	OsI_35532	Os11g0215400 (428 aa)							•		0.450
	OsI_20943	Os05g0558400 (409 aa)							•		0.450
	COA26	Os08g0498600 (234 aa)							•		0.450
	OsI_29750	Os08g0498100 (481 aa)							•		0.450
	GLX-I	Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase) (Aldoketomutase) (Glyoxalase I) (Glx I [...] (291 aa)							•		0.450
	OsI_24896	Ferredoxin--NADP reductase, embryo isozyme, chloroplast precursor (EC 1.18.1.2) (FNR) (360 aa)							•		0.450
	OsI_21809	Os06g0165800 (260 aa)							•		0.450

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	1e-138
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	1e-128
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	1e-127
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-122
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	1e-113
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	1e-108
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-105
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	1e-93
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	4e-88
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	7e-71
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	1e-69
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	1e-68
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	4e-68
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	6e-61
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	9e-58
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	2e-46
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-42
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	1e-39
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	2e-37
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	1e-33
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	2e-30
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-30
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-19
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-17
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	1e-15
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	3e-14
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-13
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-12
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-11
pfam00071	162	pfam00071, Ras, Ras family	3e-10
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	8e-10
pfam09439	181	pfam09439, SRPRB, Signal recognition particle rece	2e-09
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	6e-09
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-08
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-08
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-07
smart00275	342	smart00275, G_alpha, G protein alpha subunit	3e-07
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	4e-07
cd00066	315	cd00066, G-alpha, Alpha subunit of G proteins (gua	6e-07
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	7e-07
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-06
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-06
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	3e-06
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-06
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	4e-06
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	5e-06
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	7e-06
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	9e-06
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-05
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-05
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-05
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	1e-05
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	1e-05
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-05
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	3e-05
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	5e-05
pfam08477	116	pfam08477, Miro, Miro-like protein	5e-05
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	7e-05
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-04
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-04
cd09915	175	cd09915, Rag, Rag GTPase subfamily of Ras-related	3e-04
cd01898	170	cd01898, Obg, Obg GTPase	5e-04
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	5e-04
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	5e-04
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	6e-04
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	7e-04
COG0536	369	COG0536, Obg, Predicted GTPase [General function p	7e-04
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	9e-04
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	0.001
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	0.003
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	0.003

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score =  381 bits (979), Expect = e-138
 Identities = 179/181 (98%), Positives = 181/181 (100%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

Query: 181 A 181
           A
Sbjct: 181 A 181

Length = 181

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score =  356 bits (916), Expect = e-128
 Identities = 148/159 (93%), Positives = 156/159 (98%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
           MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 78  WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
           WRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RMLNEDELRDAVLLVFANKQDLPNAM+AA
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAA 120

Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
           E+TDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSNN
Sbjct: 121 EVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNN 159

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score =  354 bits (911), Expect = e-127
 Identities = 141/181 (77%), Positives = 160/181 (88%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL  +  F  LF KKE+RILMVGLDAAGKTTILYKLKLGE+VTTIPTIGFNVETVEYKN
Sbjct: 1   MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           + FT+WDVGGQDK+RPLWRHY+QNT GLIFVVDSNDR+R+ +AR+EL RML+EDELRDAV
Sbjct: 61  LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAM+  E+T+KLGLHS+RQR+WYIQ  CAT+ +GLYEGLDWLS NI   
Sbjct: 121 LLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180

Query: 181 A 181
            
Sbjct: 181 M 181

Length = 182

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score =  341 bits (877), Expect = e-122
 Identities = 150/175 (85%), Positives = 162/175 (92%)

Query: 5   FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
             KLFS+LF  KEMRILMVGLDAAGKTTILYKLKLGE VTTIPTIGFNVETV YKNISFT
Sbjct: 1   MGKLFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFT 60

Query: 65  VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
           VWDVGGQDKIRPLWRHY+ NTQGLIFVVDSNDRDR+ EAR+ELHRMLNEDELRDAV+LVF
Sbjct: 61  VWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVF 120

Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
           ANKQDLP+AM AAEIT+KLGLHS+R R+WYIQ TCATSG+GLYEGL WLSNN+ +
Sbjct: 121 ANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNLKN 175

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  319 bits (819), Expect = e-113
 Identities = 121/174 (69%), Positives = 141/174 (81%), Gaps = 1/174 (0%)

Query: 5   FTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
           F  + ++LF   KEMRIL++GLD AGKTTILYKLKLGEIVTTIPTIGFNVETV YKN+ F
Sbjct: 1   FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKF 60

Query: 64  TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
           TVWDVGGQ+ +RPLWR+YF NT  +IFVVDS DRDR+ EA++ELH +LNE+EL DA LL+
Sbjct: 61  TVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLI 120

Query: 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
            ANKQDLP AM+ AEI + LGLH L+ R W IQ   A +GEGL EGLDWLSN I
Sbjct: 121 LANKQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI 174

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score =  306 bits (786), Expect = e-108
 Identities = 126/168 (75%), Positives = 146/168 (86%)

Query: 9   FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
            S+LF  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDV
Sbjct: 1   LSKLFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 60

Query: 69  GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
           GGQDKIRPLWRHY+  TQGLIFVVDS DRDR+ EAR ELHR++N+ E+RDA+LLVFANKQ
Sbjct: 61  GGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQ 120

Query: 129 DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
           DLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WLS+N
Sbjct: 121 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSSN 168

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  299 bits (767), Expect = e-105
 Identities = 110/158 (69%), Positives = 135/158 (85%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
           RILM+GLD AGKTTILYKLKLGE+VTTIPTIGFNVETVEYKN+ FTVWDVGGQDKIRPLW
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60

Query: 79  RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
           +HY++NT GLIFVVDS+DR+R+ EA++ELH++LNE+EL+ A LL+ ANKQDLP A+  +E
Sbjct: 61  KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESE 120

Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
           + + LGL S++ R W+IQ   A +G+GL EGLDWL   
Sbjct: 121 LIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score =  268 bits (687), Expect = 1e-93
 Identities = 103/157 (65%), Positives = 126/157 (80%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
           RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP W
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60

Query: 79  RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
           R Y+ NT  +I+VVDS DRDR+  ++ ELH ML E+EL+DAVLLVFANKQD+P A++ AE
Sbjct: 61  RCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAE 120

Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175
           + +KLGL  L+ R W I  T AT GEGL EG+DWL N
Sbjct: 121 VAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLVN 157

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score =  255 bits (653), Expect = 4e-88
 Identities = 94/174 (54%), Positives = 127/174 (72%)

Query: 3   LTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
           L F+ L+S  F +KE ++++VGLD AGKTTILY+  LGE+V T PTIG NVE + YKNI 
Sbjct: 1   LLFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIR 60

Query: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
           F +WD+GGQ+ +R  W  Y+ NT  +I V+DS DR+R+   ++EL++ML  ++LR AVLL
Sbjct: 61  FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLL 120

Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
           V ANKQDL  AM  AEI++ LGL S+R   W+IQ  CA +GEGL EGLDW+++ 
Sbjct: 121 VLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIASR 174

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score =  211 bits (539), Expect = 7e-71
 Identities = 99/162 (61%), Positives = 125/162 (77%), Gaps = 1/162 (0%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
           R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60

Query: 79  RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
           +HY+ NTQ ++FV+DS+ RDRV EA  EL ++L E ELRDA+LL+FANKQD+  A++  E
Sbjct: 61  KHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 120

Query: 139 ITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
           +T+ L LH L   R WYIQ   A SG GLYEGLDWLS  + +
Sbjct: 121 MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score =  208 bits (532), Expect = 1e-69
 Identities = 83/162 (51%), Positives = 115/162 (70%), Gaps = 2/162 (1%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKI 74
           +EMRILM+GLD AGKTTIL K   GE ++TI PT+GFN++T+EY      +WDVGGQ  +
Sbjct: 13  REMRILMLGLDNAGKTTILKKF-NGEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSL 71

Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
           R  WR+YF++T  LI+VVDS+DR R+ + + EL ++L E+ L  A LL+FANKQDLP A+
Sbjct: 72  RSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGAL 131

Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
           +  EI + L L S++  HW I    A +GE L +G+DWL ++
Sbjct: 132 SPEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLVDD 173

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score =  206 bits (525), Expect = 1e-68
 Identities = 82/166 (49%), Positives = 112/166 (67%)

Query: 11  RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG 70
           +  +++E+RIL++GLD AGKTTIL +L   +I    PT GFN++ V+       VWD+GG
Sbjct: 9   KPSSRQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNVWDIGG 68

Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
           Q KIRP WR+YF+NT  LI+V+DS DR R  EA  EL  +L E++L    +LVFANKQDL
Sbjct: 69  QRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDL 128

Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
             A  A E+ + L LH +R R W+IQ+  A +GEGL EG++W+  N
Sbjct: 129 LTAAPAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWVCKN 174

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score =  204 bits (520), Expect = 4e-68
 Identities = 76/154 (49%), Positives = 111/154 (72%), Gaps = 2/154 (1%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPL 77
           ++L++GLD+AGK+T+LYKLK  E+VTTIPT+GFNVE ++  K++S TVWDVGGQ+K+R +
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60

Query: 78  WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
           W+ Y +NT GL++VVDS+D  R+ E++ EL  +L  + ++   +++ ANKQDLP A+ A 
Sbjct: 61  WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120

Query: 138 EITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGL 170
           EIT +  L      R WY+Q   A +GEGL E  
Sbjct: 121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score =  186 bits (475), Expect = 6e-61
 Identities = 81/166 (48%), Positives = 111/166 (66%), Gaps = 6/166 (3%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQD 72
           + I+M+GLD+AGKTT+LY+LK  E V T+PT GFN E ++      K ++F  WDVGGQ+
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQE 63

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +LV ANKQDLPN
Sbjct: 64  KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPN 123

Query: 133 AMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           A+  +E+   L LH L     W++Q  CA  GEGL EGL+ L   I
Sbjct: 124 ALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMI 169

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score =  178 bits (452), Expect = 9e-58
 Identities = 76/160 (47%), Positives = 112/160 (70%), Gaps = 4/160 (2%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
           IL++GLD +GKTTI+ +LK     +    PT+GFNVE+ +  N+SFT +D+ GQ K R L
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61

Query: 78  WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMN 135
           W HY++N QG+IFV+DS+DR R+V A+DEL  +LN  ++  R   +L +ANK DLP+A+ 
Sbjct: 62  WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121

Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175
           A +IT  L L +++ + W+I ++ A +GEGL EG+DWL  
Sbjct: 122 AVKITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQA 161

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score =  150 bits (380), Expect = 2e-46
 Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 13/186 (6%)

Query: 5   FTKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
           F  + S L   KKE +I+ +GLD AGKTT+L+ LK   +   +PT+    E +   N+ F
Sbjct: 6   FYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNVKF 65

Query: 64  TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
           T +D+GG ++ R +W+ YF    G++F+VD+ D +R  E+++EL  +LN++EL +  +L+
Sbjct: 66  TTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILI 125

Query: 124 FANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLD 171
             NK D P A++  E+ + LGL+                R   +        +G  EG  
Sbjct: 126 LGNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGEGFR 185

Query: 172 WLSNNI 177
           WLS  +
Sbjct: 186 WLSQYL 191

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score =  139 bits (352), Expect = 2e-42
 Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 16/168 (9%)

Query: 20  ILMVGLDAAGKTTILYKLK-----------LGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
           +L++GLD AGKTT L + K             +I    PT+G N+ T+E        WD+
Sbjct: 2   VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKIT---PTVGLNIGTIEVGKARLMFWDL 58

Query: 69  GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
           GGQ+++R LW  Y+  + G+I+V+DS DR+R  E++    +++N + L    LLV ANKQ
Sbjct: 59  GGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQ 118

Query: 129 DLPNAMNAAEITD--KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174
           DLP+A++ AEI +     +  + +R   +Q   A  GEG+ EG++WL 
Sbjct: 119 DLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLV 166

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score =  132 bits (333), Expect = 1e-39
 Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 1/158 (0%)

Query: 20  ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
           I +VGL  +GKTT++  +  G+    TIPT+GFN+  V   N++  VWD+GGQ + R +W
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMW 61

Query: 79  RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
             Y +    +++VVD+ DR+++  A++ELH +L +  L    LLV  NK DLP A++  E
Sbjct: 62  ERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDE 121

Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
           + +++ L S+  R     S  A     +   LDWL  +
Sbjct: 122 LIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWLIKH 159

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score =  126 bits (319), Expect = 2e-37
 Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 6/146 (4%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
           IL++GLD AGKT++L+ L   E    + +PT GFN   +  ++    + ++GG   +R  
Sbjct: 2   ILVLGLDGAGKTSLLHSLS-SERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKY 60

Query: 78  WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
           W+ Y   +QGLIFVVDS D +R+  AR ELH++L      D  L+V ANKQDLP A +  
Sbjct: 61  WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPP--DLPLVVLANKQDLPAARSVQ 118

Query: 138 EITDKLGLHSL-RQRHWYIQSTCATS 162
           EI  +L L  + R R W +Q T    
Sbjct: 119 EIHKELELEPIARGRRWILQGTSLDD 144

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score =  116 bits (293), Expect = 1e-33
 Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 9/163 (5%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79
           +L VGLD AGKTT++  L+        PT+GF    +        ++D+GG    R +W 
Sbjct: 2   LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61

Query: 80  HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139
           +Y+    GL+FVVDS+D DRV E ++ L  +L    +    +LV ANKQD  NA+  A++
Sbjct: 62  NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121

Query: 140 TDKLGLHSLRQR---HWYIQSTCATSGEG------LYEGLDWL 173
            + L L  L        +I+   A  G G      + EGL WL
Sbjct: 122 IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score =  109 bits (273), Expect = 2e-30
 Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 11/172 (6%)

Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
            K  +IL +GLD AGKTT+L+ LK   +    PT     E +   NI FT +D+GG  + 
Sbjct: 15  NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQA 74

Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
           R LW+ YF    G++++VD+ D++R  E++ EL  +L+++EL     L+  NK D P A 
Sbjct: 75  RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA 134

Query: 135 NAAEITDKLGLHSL---------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           +  E+   LGL +          R    ++ S     G G  EG  WLS  I
Sbjct: 135 SEDELRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGYG--EGFKWLSQYI 184

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  109 bits (274), Expect = 3e-30
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 13  FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY----KNISFTVWD 67
              KE +I+++G    GKTT+L +L   E      PTIG            +NI   +WD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 68  VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127
             GQ++ R L   Y++   G++ V DS  R+   E  +E    L E    D  +L+  NK
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 128 QDLPNAMNAAEI 139
            DL +  +++E 
Sbjct: 121 IDLFDEQSSSEE 132

Length = 219

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 79.7 bits (197), Expect = 2e-19
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 17  EMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVET--VEYKNISFTV--WDVGG 70
           E++I++VG    GK+T+L +L   +  I    P    N  T  +E    ++     D  G
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60

Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR-DAVLLVFANKQD 129
           Q+    + R Y++  +  + V D       VE   E               +++  NK D
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKID 120

Query: 130 LPNA 133
           L +A
Sbjct: 121 LRDA 124

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 75.6 bits (186), Expect = 1e-17
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 16/162 (9%)

Query: 23  VGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEY--KNISFTVWDVGGQDKIRP 76
           VG    GK+++L  L  GE+         T   +V   E     +   + D  G D+   
Sbjct: 3   VGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFGG 62

Query: 77  LW-----RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           L      R   +    ++ VVDS DR+   +A+  + R L ++ +    +++  NK DL 
Sbjct: 63  LGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP---IILVGNKIDLL 119

Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
                 E+         +     +    A +GEG+ E  + L
Sbjct: 120 EEREVEEL--LRLEELAKILGVPVFEVSAKTGEGVDELFEKL 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 70.8 bits (174), Expect = 1e-15
 Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 7/131 (5%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV---EYKNISFTVWDVGGQDKIRP 76
           +L++G   +GKT +  KL  G++ +T+ +I  NV +      K    T+ DV G +K+R 
Sbjct: 3   VLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKKLTLVDVPGHEKLRD 62

Query: 77  -LWRHYFQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAV--LLVFANKQDLPN 132
            L  +   + + ++FVVDS    + + +  + L+ +L + E       +L+  NKQDL  
Sbjct: 63  KLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLFT 122

Query: 133 AMNAAEITDKL 143
           A  A +I + L
Sbjct: 123 AKPAKKIKELL 133

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 66.7 bits (163), Expect = 3e-14
 Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 25/181 (13%)

Query: 10  SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-------------TIGFNVETV 56
           S      E +I+++G   AGKTT +  L    +V T               T+  +  ++
Sbjct: 3   SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI 62

Query: 57  EYKNISFTVWDVG--GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114
           E       V   G  GQ++ + +W    +   G I +VDS+ R     A      +++  
Sbjct: 63  ELDE-DTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSS-RPITFHAE----EIIDFL 116

Query: 115 ELRDAV-LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
             R+ + ++V  NKQDL +A+   +I + L L  L      +    AT GEG  + LD L
Sbjct: 117 TSRNPIPVVVAINKQDLFDALPPEKIREALKLELL---SVPVIEIDATEGEGARDQLDVL 173

Query: 174 S 174
            
Sbjct: 174 L 174

Length = 187

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 63.2 bits (155), Expect = 4e-13
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 14/124 (11%)

Query: 18  MRILMVGLDAA-GKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQ 71
            +I+++G D+  GKT++L +    +       TIG  F  +T+E   K +   +WD  GQ
Sbjct: 1   FKIVLIG-DSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQ 59

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQ 128
           ++ R +   Y++   G I V D  +R+    + +  +EL          +  +++  NK 
Sbjct: 60  ERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPP----NIPIILVGNKS 115

Query: 129 DLPN 132
           DL +
Sbjct: 116 DLED 119

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 17/168 (10%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVE--TVEYKNISFTVWDVGGQDK 73
           +IL++G    GK+++L +         +  TIG  F V+  TV+ K +   +WD  GQ++
Sbjct: 2   KILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQER 61

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL----RDAVLLVFANKQD 129
            R L   Y++  QG+I V D   RD      D L   LNE +      DAV ++  NK D
Sbjct: 62  FRTLTSSYYRGAQGVILVYDVTRRDTF----DNLDTWLNELDTYSTNPDAVKMLVGNKID 117

Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
             N     E+T + G    R+ +     T A +  G+ +  + L   I
Sbjct: 118 KEN----REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 11/119 (9%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKI 74
           +IL++G    GK+++L       +    PTIG + +    TV  K +  T+WD  GQ++ 
Sbjct: 16  KILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF 75

Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL----RDAVLLVFANKQD 129
           R L   Y++N QG+I V D   R+      D   +   E EL    +D V ++  NK D
Sbjct: 76  RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGK---EVELYSTNQDCVKMLVGNKVD 131

Length = 211

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 55.6 bits (135), Expect = 3e-10
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 12/122 (9%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
           ++++VG    GK+++L +    +     IPTIG  F  +T+E   K +   +WD  GQ++
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 130
            R L   Y++  QG + V D   RD     +   +E+ R  +E    +  +++  NK DL
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADE----NVPIVLVGNKCDL 116

Query: 131 PN 132
            +
Sbjct: 117 ED 118

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 54.4 bits (132), Expect = 8e-10
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            +I+++G    GK+++L +   G+       TIG  F  +T+E   K +   +WD  GQ+
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           + R +   Y++   G + V D  +R   + +     EL    +     + V+++  NK D
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASP----NVVIMLVGNKSD 116

Query: 130 LPN 132
           L  
Sbjct: 117 LEE 119

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 8/137 (5%)

Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI--GFNVETVEYKNISFTVWDVGGQD 72
             +  +++ GL  +GKT++   L  G +  T+ +       + + +K  SFT+ D  G  
Sbjct: 1   SSQPAVIIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKYMLHKGFSFTLIDFPGHV 60

Query: 73  KIRP--LWRH-YFQNTQGLIFVVDSN-DRDRVVEARDELHRMLNEDEL-RDAV-LLVFAN 126
           K+R   L       + +G++FVVDS      V +  + L+ +L+  EL ++ + +L+  N
Sbjct: 61  KLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACN 120

Query: 127 KQDLPNAMNAAEITDKL 143
           KQ+   A    +I   L
Sbjct: 121 KQESFTARPPKKIKQAL 137

The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 46  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
           + T G      ++K + F ++DVGGQ   R  W H F++   +IFVV  ++ D+V+   D
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212

Query: 106 ELHRM----------LNEDELRDAVLLVFANKQDL 130
             +R+           N    ++  +++F NK+DL
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKDL 247

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 10/122 (8%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            ++L++G    GK+ +L +        + I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDL 130
           + R +   Y++   G+I V D  D       +   + M N DE    D   ++  NK D+
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIK---NWMRNIDEHASEDVERMLVGNKCDM 120

Query: 131 PN 132
             
Sbjct: 121 EE 122

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 17/140 (12%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
           ++L++G    GK+ +L +        + I TIG  F + T+E   K +   +WD  GQ++
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
            R +   Y++   G+I V D  D++    V +   E+ R  +E+  +   LLV  NK DL
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK---LLV-GNKCDL 119

Query: 131 PNA-----MNAAEITDKLGL 145
            +        A E  D+LG+
Sbjct: 120 TDKKVVDYTEAKEFADELGI 139

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLG-----EIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
            +++++G    GKT+++ +            TT  +       +  K I   +WD  GQ+
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           +   L   Y+++  G I V D  D D   +V +   EL +M       +  L++  NK D
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKID 116

Query: 130 LPN 132
           L  
Sbjct: 117 LER 119

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 46  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
           +PT G        K + F ++DVGGQ   R  W H F N   +IF V  ++ D+V+E  +
Sbjct: 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE 228

Query: 106 ELHRM----------LNEDELRDAVLLVFANKQDL 130
             +RM           N     +  +++F NK DL
Sbjct: 229 STNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 47.6 bits (113), Expect = 4e-07
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 5/125 (4%)

Query: 48  TIG--FNVETVEYKNISFTV--WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           TIG  F +E  E   + F++  WD  GQ++ + +   Y++  Q +I V D  D   +   
Sbjct: 32  TIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT 91

Query: 104 RDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
           R  L   L E++    +L +   K+DL +      + ++  +   R+      +  A +G
Sbjct: 92  RQWLEDALKENDPSSVLLFLVGTKKDLSSP-AQYALMEQDAIKLAREMKAEYWAVSALTG 150

Query: 164 EGLYE 168
           E + +
Sbjct: 151 ENVRD 155

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding)

 Score = 47.9 bits (115), Expect = 6e-07
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 46  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
           + T G        KN+ F ++DVGGQ   R  W H F++   +IFVV  ++ D+V+   +
Sbjct: 146 VKTTGIIETDFSIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDE 205

Query: 106 ELHRML-----------NEDELRDAVLLVFANKQDL 130
            ++RM            +      +++L F NK+DL
Sbjct: 206 SVNRMQESLKLFDSICNSRWFANTSIIL-FLNKKDL 240

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 46.7 bits (111), Expect = 7e-07
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 28/176 (15%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN------------IS 62
           +++L +G    GKTT LY+    +     I T+G  F  + V Y +            + 
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
             +WD  GQ++ R L   +F++  G + + D       +  R+ + ++       +  ++
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIV 124

Query: 123 VFANKQDLP-----NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
           +  NK DLP     +   A E+ DK G+        Y + T A +G+ + + ++ L
Sbjct: 125 LIGNKADLPDQREVSERQARELADKYGIP-------YFE-TSAATGQNVEKAVETL 172

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 16/130 (12%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
           +I+++G    GK+ IL +    E  + +  TIG    T    VE K +   +WD  GQ++
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-----AVLLVFANKQ 128
            R +   Y++   G + V D   R    +  D + R L   ELRD      V+++  NK 
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKR----QTFDNVQRWLR--ELRDHADSNIVIMMAGNKS 127

Query: 129 DLPNAMNAAE 138
           DL +  + AE
Sbjct: 128 DLNHLRSVAE 137

Length = 216

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
          +I+++G    GKT + Y+   G     T  TIG  F   TVE   + I   +WD  GQ++
Sbjct: 4  KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 74 IR-PLWRHYFQNTQGLIFVVD 93
           R  + +HY++N   ++FV D
Sbjct: 64 FRKSMVQHYYRNVHAVVFVYD 84

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN----VETVEYKNISFTVWDVGGQD 72
           ++++VG    GKT +L + K G  +  + I T+G      V TV+   +   +WD  GQ+
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
           + R +   Y+++   L+ + D  ++      R  L  +L E    D V+++  NK D+
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEIL-EYAQSDVVIMLLGNKADM 118

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 5/80 (6%)

Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNIS--FTVWDVGGQDK 73
          R+L++G    GKT +L +    E  ++ I TIG  F ++T+E   I     +WD  GQ++
Sbjct: 2  RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61

Query: 74 IRPLWRHYFQNTQGLIFVVD 93
           + + + Y++  QG+  V D
Sbjct: 62 YQTITKQYYRRAQGIFLVYD 81

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 12/120 (10%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVGGQDK 73
           +I+++G    GKT ++ + K G        TIG  F ++T+E   K +   +WD  GQ++
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA---VLLVFANKQDL 130
            R + + Y+++  G I   D   R     + + +   + E E   A   VLL+  NK DL
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRR----SSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 9/119 (7%)

Query: 19  RILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQD 72
           ++L++G    GK+++L +       G  +TTI  + F + TVE   + +   +WD  GQ+
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTI-GVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           + R +   Y++ T G+I V D  + +  V  +  L  +    +    VL+   NK D P
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLV--GNKNDDP 123

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKN----ISFTVWDVGGQDK 73
          ++++VG    GKTT + +   GE     + T+G  V  +++      I F VWD  GQ+K
Sbjct: 2  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61

Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR 97
             L   Y+   Q  I + D   R
Sbjct: 62 FGGLRDGYYIQGQCAIIMFDVTSR 85

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 9/86 (10%)

Query: 49  IGFNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE 106
           + F ++TVE   K I   +WD  GQ++   +   Y+++ +G+I V D   +    E  D+
Sbjct: 35  VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK----ETFDD 90

Query: 107 L---HRMLNEDELRDAVLLVFANKQD 129
           L    +M+++    DA LL+  NK D
Sbjct: 91  LPKWMKMIDKYASEDAELLLVGNKLD 116

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 20/172 (11%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNISFTV--WDVGGQDK 73
           +++ +G    GK+ I+ +   G  V+  +PTIG  + V+ V  +N    V  +D+ G  +
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDR-------VVEARDELHRMLNEDELRDAVLLVFAN 126
              +   ++++TQG++ V D  DR         + E + E     N   + + V++V AN
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGN---MENIVVVVCAN 118

Query: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQ-STCATSGEGLYEGLDWLSNNI 177
           K DL      +E   +L      +   +    T A +GEG+ E    L ++I
Sbjct: 119 KIDLTKHRAVSEDEGRL----WAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 33/169 (19%)

Query: 17  EMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET-----VEYKNISFTVWDVG 69
           E ++++VG    GKT++  +L +GE        T G NV+       E K I   VWD G
Sbjct: 1   EAKLMLVGQGGVGKTSLCKQL-IGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFG 59

Query: 70  GQDKIRPLWRHYFQNTQGLIFVV----DSNDRDRV------VEARDELHRMLNEDELRDA 119
           GQ+      +  F  ++ L  +V      ++  RV      ++A                
Sbjct: 60  GQEIYHATHQF-FLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGG----------VSP 108

Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
           V+LV     D        +I  K            I      +G+G+ E
Sbjct: 109 VILV-GTHID---ESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 12/122 (9%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVGGQDK 73
           +++++G  + GK++I+ +    E       TIG  F  +TV      + F +WD  GQ++
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 130
            R L   Y++     I V D    +   +A+    EL          + V+ +  NK DL
Sbjct: 63  YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPP----NIVIALAGNKADL 118

Query: 131 PN 132
            +
Sbjct: 119 ES 120

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 24/129 (18%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-----VETVEYKNISFTVWDVGGQD 72
           R++++G    GK+++L +   G     + PT+G +     +E      I   +WD  GQ+
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR-------DRVVEARDEL--HRMLNEDELRDAVLLV 123
           + R + R Y++N+ G++ V D  +R       D + EAR  +  HR          V ++
Sbjct: 64  RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRP---------VFIL 114

Query: 124 FANKQDLPN 132
             +K DL +
Sbjct: 115 VGHKCDLES 123

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 19 RILMVGLDAAGKTT----ILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDK 73
          ++L++GL  +GK++    I       + +    TI      V +  N++  +WD  GQD 
Sbjct: 1  KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDD 60

Query: 74 IRPLWRHY-----FQNTQGLIFVVDSNDRD 98
              +        F N   LI+V D   R+
Sbjct: 61 FMENYLTRQKEHIFSNVGVLIYVFDVESRE 90

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQ--- 71
          ++++VG  A GKT++LY   LGE      PT+  N  T   V+ K +   +WD  GQ   
Sbjct: 3  KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 72 DKIRPLWRHYFQNTQGLI-FVVDSND 96
          +++RPL   Y +    LI F +D+ D
Sbjct: 63 ERLRPL--SYSKAHVILIGFAIDTPD 86

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 13/138 (9%)

Query: 19  RILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETV--EYKNISFTVWDVGGQD 72
           ++L++G  + GKT+ L++          V+T+  I F V+TV    K I   +WD  GQ+
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R +   Y++   G I + D  + +     +D   ++         V+LV  NK D+ +
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILV-GNKCDMED 120

Query: 133 -----AMNAAEITDKLGL 145
                A    ++ D+LG 
Sbjct: 121 ERVVSAERGRQLADQLGF 138

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKN----ISFTVWDVGGQDK 73
          ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+K
Sbjct: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74

Query: 74 IRPLWRHYFQNTQGLIFVVDSNDR 97
             L   Y+ + Q  I + D   R
Sbjct: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98

Length = 219

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 10/118 (8%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEYKNISFTVWDVGGQDK 73
           +++++G   +GK+++L +L  GE           T+  +   V+       +WD GG+++
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQ 128
           ++     + +    ++ V D  DR+    V      L  +          +++  NK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL--RKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 13/84 (15%)

Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--ISFTVWDVG 69
          +I+++G    GKT ++ +   G      P     TIG  F ++TVE K   I   +WD  
Sbjct: 9  KIVLIGNAGVGKTCLVRRFTQG----LFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64

Query: 70 GQDKIRPLWRHYFQNTQGLIFVVD 93
          GQ++ R + + Y+++   LI   D
Sbjct: 65 GQERFRSITQSYYRSANALILTYD 88

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 23/162 (14%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFN----VETVEYKNISFTVWDVGGQDK 73
           + L++G    GK+ +L++    +       TIG      V  V  K++   +WD  GQ++
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH--RMLNEDELRDAVLLVFANKQDLP 131
            R + R Y++   G + V D   R+      + L   R L      D V+++  NK+DL 
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASP---DIVIILVGNKKDLE 118

Query: 132 NA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
           +      + A+    + GL  L         T A +GE + E
Sbjct: 119 DDREVTFLEASRFAQENGLLFLE--------TSALTGENVEE 152

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET-VEYKNISFTV--WDVGGQ---D 72
          I++VG  A GKT +L      +  T  +PT+  N    V        +  WD  GQ   D
Sbjct: 3  IVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEYD 62

Query: 73 KIRPL 77
          ++RPL
Sbjct: 63 RLRPL 67

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 16/124 (12%)

Query: 19  RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDK 73
           ++L+ G   +GK++I     +     + +    TI      + +  N +  +WD  GQD 
Sbjct: 1   KLLLXGRRRSGKSSIRKVVFHNYSPFDTLRLESTIDVEHSHLSFLGNXTLNLWDCPGQDV 60

Query: 74  IRPL---WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR----DAVLLVFAN 126
                    H FQ    LI+V+D   +D  ++A   L + L   +      DA + V  +
Sbjct: 61  FFEPTKDKEHIFQXVGALIYVIDV--QDEYLKAITILAKAL--KQAYKVNPDANIEVLIH 116

Query: 127 KQDL 130
           K D 
Sbjct: 117 KVDG 120

Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 28/166 (16%)

Query: 22  MVGLDAAGKTTILYKL-----KLG--EIVTTIPTIGFNVETVEYKNI-SFTVWDVGG--- 70
           +VGL  AGK+T+L  +     K+      T +P +G     V   +  SF + D+ G   
Sbjct: 5   LVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLG----VVRVDDGRSFVIADIPGLIE 60

Query: 71  ---QDK---IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN--EDELRDAVLL 122
              + K    R L RH  + T+ L+ V+D +  D  VE  + +   L      L +   +
Sbjct: 61  GASEGKGLGHRFL-RH-IERTRVLLHVIDLSGEDDPVEDYETIRNELEAYNPGLAEKPRI 118

Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
           V  NK DL +A    E   +L L  L+ +  +  S  A +GEGL E
Sbjct: 119 VVLNKIDLLDAEERFEKLKEL-LKELKGKKVFPIS--ALTGEGLDE 161

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           +   +WD  GQ++ R L   Y +++   I V D  +R         +  +LNE   +D +
Sbjct: 29  VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVI 87

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
           + +  NK DL +     ++T + G+   ++ +     T A +G  +
Sbjct: 88  IALVGNKTDLGDLR---KVTYEEGMQKAQEYNTMFHETSAKAGHNI 130

Length = 176

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
          E ++++VG    GKTT + +   GE     IPT+G  V  +++      I F VWD  GQ
Sbjct: 9  EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68

Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD 98
          +K   L   Y+   Q  I + D   R 
Sbjct: 69 EKFGGLRDGYYIKGQCAIIMFDVTSRI 95

Length = 215

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 12/118 (10%)

Query: 21  LMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEY--KNISFTVWDVGGQDKIR 75
           +++G    GK+ +L++    + +   P TIG  F    +E   + I   +WD  GQ++ R
Sbjct: 6   IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR 65

Query: 76  PLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
            + R Y++   G + V D   R   + +     +   + N     + V+ +  NK DL
Sbjct: 66  AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIFLIGNKADL 119

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 11/100 (11%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPT---IGFNVETV--EYKNISFTVWDVGGQD 72
           ++ L+VG    GK  IL  L+ G   +       I +   T+  + + +   +WD  GQ 
Sbjct: 7   LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR------DRVVEARDE 106
           +   ++R Y +  QG+I V D  +R      DR ++  DE
Sbjct: 67  RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE 106

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only]

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 29/139 (20%)

Query: 22  MVGLDAAGKTTILYKL-----KLG--EIVTTIPTIGFNVETVEYKNISFTVWDVGG---- 70
           +VGL  AGK+T+L  +     K+      T +P +G  V     +  SF V D+ G    
Sbjct: 164 LVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGV-VRVDGGE--SFVVADIPGLIEG 220

Query: 71  --QDK---IRPLWRHYFQNTQGLIFVVD--SNDRDRVVEA----RDELHRMLNEDELRDA 119
             +     +R L RH  + T+ L+ V+D    D    +E     R+EL +     +L + 
Sbjct: 221 ASEGVGLGLRFL-RH-IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEK 276

Query: 120 VLLVFANKQDLPNAMNAAE 138
             +V  NK DLP      E
Sbjct: 277 PRIVVLNKIDLPLDEEELE 295

Length = 369

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 38.4 bits (89), Expect = 9e-04
 Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNISFTVWDVGGQDKIR 75
           ++++++G    GKT++L++        T+ T+G  F ++     NIS  +WD  G+++  
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNIS--IWDTAGREQFH 58

Query: 76  PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
            L   Y +    +I   D ++   + E  D    +  +    D +  V  NK DL
Sbjct: 59  GLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLT-DTANEDCLFAVVGNKLDL 112

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 23 VGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDKIRPL 77
          VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+K   L
Sbjct: 1  VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 78 WRHYFQNTQGLIFVVDSNDR 97
             Y+   Q  I + D   R
Sbjct: 61 RDGYYIQGQCAIIMFDVTAR 80

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 12/95 (12%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN---VETVEYKNISFTVWDVGGQ--- 71
           +++++G  A GKT++L     G       PT+  N      V+   +  ++WD  GQ   
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 72  DKIRPLWRHYFQNTQ--GLIFVVDSNDRDRVVEAR 104
           D++R L    + +T    L F VD+ D    VE++
Sbjct: 62  DRLRSL---SYADTHVIMLCFSVDNPDSLENVESK 93

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 24/130 (18%)

Query: 18  MRILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNVETVEY---KNISF 63
           ++I+++G  A+GKT+++           YK  +G        + F    +      N++ 
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIG--------LDFFSRRITLPGSLNVTL 52

Query: 64  TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD--ELHRMLNEDELRDAVL 121
            VWD+GGQ     +   Y    Q +  V D  +        D   + + +NE+      +
Sbjct: 53  QVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKM 112

Query: 122 LVFANKQDLP 131
           ++  NK DL 
Sbjct: 113 VLVGNKTDLE 122

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
PLN00223	181	ADP-ribosylation factor; Provisional	100.0
PTZ00133	182	ADP-ribosylation factor; Provisional	100.0
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	100.0
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	100.0
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	100.0
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	100.0
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	100.0
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	100.0
smart00178	184	SAR Sar1p-like members of the Ras-family of small	100.0
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	100.0
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	100.0
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	100.0
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.98
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.98
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.98
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.98
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.98
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.98
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.98
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.97
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.97
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.97
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.97
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.97
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.97
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.97
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.97
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.97
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.97
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.97
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.97
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.97
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.97
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.97
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.97
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.97
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.97
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.97
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.97
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.97
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.97
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.97
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.97
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.97
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.97
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.97
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.97
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.97
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.97
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.97
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.97
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.97
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.97
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.97
PLN03118	211	Rab family protein; Provisional	99.97
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.97
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.97
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.97
PLN03110	216	Rab GTPase; Provisional	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.96
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.96
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.96
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.96
PLN03108	210	Rab family protein; Provisional	99.96
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.96
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.96
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.96
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.96
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.96
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.96
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.95
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.95
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.95
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.95
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.95
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
KOG0395	196	consensus Ras-related GTPase [General function pre	99.94
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.94
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.94
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.94
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
PRK04213	201	GTP-binding protein; Provisional	99.93
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.92
PRK15494	339	era GTPase Era; Provisional	99.92
cd00881	189	GTP_translation_factor GTP translation factor fami	99.92
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.92
PRK03003	472	GTP-binding protein Der; Reviewed	99.92
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
PLN00023	334	GTP-binding protein; Provisional	99.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.91
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.91
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
COG1100	219	GTPase SAR1 and related small G proteins [General	99.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.9
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.9
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.9
PRK12296	500	obgE GTPase CgtA; Reviewed	99.9
PRK11058	426	GTPase HflX; Provisional	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
PTZ00099	176	rab6; Provisional	99.89
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.89
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.89
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.88
PRK00089	292	era GTPase Era; Reviewed	99.88
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
COG1159	298	Era GTPase [General function prediction only]	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.88
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.87
COG1160	444	Predicted GTPases [General function prediction onl	99.87
PRK05306	787	infB translation initiation factor IF-2; Validated	99.87
PRK12298	390	obgE GTPase CgtA; Reviewed	99.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.86
PRK12317	425	elongation factor 1-alpha; Reviewed	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.86
COG0486	454	ThdF Predicted GTPase [General function prediction	99.86
PRK05433	600	GTP-binding protein LepA; Provisional	99.85
COG2229	187	Predicted GTPase [General function prediction only	99.85
COG0218	200	Predicted GTPase [General function prediction only	99.85
KOG1673	205	consensus Ras GTPases [General function prediction	99.85
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.84
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.84
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.84
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.84
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.84
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.83
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.83
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.83
PRK10218	607	GTP-binding protein; Provisional	99.83
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.83
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.83
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.82
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.82
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.82
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.81
PRK04004	586	translation initiation factor IF-2; Validated	99.81
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.8
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.8
COG1084	346	Predicted GTPase [General function prediction only	99.8
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.8
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.79
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.79
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.79
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.78
PRK12736	394	elongation factor Tu; Reviewed	99.78
KOG0090	238	consensus Signal recognition particle receptor, be	99.78
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.78
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.78
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.77
PRK12735	396	elongation factor Tu; Reviewed	99.77
PRK13351	687	elongation factor G; Reviewed	99.77
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.76
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.76
CHL00071	409	tufA elongation factor Tu	99.76
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.76
COG2262	411	HflX GTPases [General function prediction only]	99.76
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.76
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.75
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.75
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.74
COG1163	365	DRG Predicted GTPase [General function prediction	99.74
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.74
PRK00049	396	elongation factor Tu; Reviewed	99.74
PLN03126	478	Elongation factor Tu; Provisional	99.73
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.73
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.73
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.73
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.73
PTZ00141	446	elongation factor 1- alpha; Provisional	99.72
PLN00043	447	elongation factor 1-alpha; Provisional	99.72
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.72
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.72
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.72
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.72
PLN03127	447	Elongation factor Tu; Provisional	99.71
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.7
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.7
COG0536	369	Obg Predicted GTPase [General function prediction	99.69
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.69
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.69
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.68
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.67
PRK12739	691	elongation factor G; Reviewed	99.66
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.66
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.66
PRK00007	693	elongation factor G; Reviewed	99.65
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.65
PRK12740	668	elongation factor G; Reviewed	99.64
COG3596	296	Predicted GTPase [General function prediction only	99.63
KOG1145	683	consensus Mitochondrial translation initiation fac	99.62
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.62
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.6
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.59
PRK09602	396	translation-associated GTPase; Reviewed	99.58
PRK09866	741	hypothetical protein; Provisional	99.57
PRK13768	253	GTPase; Provisional	99.56
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.56
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.54
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.53
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.52
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.52
PRK14845	1049	translation initiation factor IF-2; Provisional	99.51
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.5
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.5
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.49
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.49
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.48
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.47
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.46
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.46
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.43
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.42
PTZ00416	836	elongation factor 2; Provisional	99.42
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.42
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.41
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.41
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.4
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.39
PRK07560	731	elongation factor EF-2; Reviewed	99.36
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.35
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.35
PTZ00258	390	GTP-binding protein; Provisional	99.35
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.34
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.34
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.32
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.32
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.31
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.3
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.28
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.27
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.24
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.24
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.2
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.19
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.18
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.18
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	99.15
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.14
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.13
KOG0410	410	consensus Predicted GTP binding protein [General f	99.1
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.08
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.07
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.05
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.04
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.02
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.01
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.01
PRK09601	364	GTP-binding protein YchF; Reviewed	99.0
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.98
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.98
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.98
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.98
PRK12289	352	GTPase RsgA; Reviewed	98.97
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.95
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.94
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.93
KOG2486	320	consensus Predicted GTPase [General function predi	98.92
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.91
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.89
PRK00098	298	GTPase RsgA; Reviewed	98.87
PRK12288	347	GTPase RsgA; Reviewed	98.86
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.86
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.85
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.84
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.83
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.83
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.78
COG1161	322	Predicted GTPases [General function prediction onl	98.76
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.76
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.74
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.74
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.73
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.72
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.72
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.71
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.7
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.67
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.66
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.65
KOG1143	591	consensus Predicted translation elongation factor	98.64
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.61
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.6
KOG0460	449	consensus Mitochondrial translation elongation fac	98.59
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.56
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.56
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.55
PRK10416	318	signal recognition particle-docking protein FtsY;	98.53
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.52
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.51
PRK14974	336	cell division protein FtsY; Provisional	98.51
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.51
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.5
PRK12289	352	GTPase RsgA; Reviewed	98.49
cd03112	158	CobW_like The function of this protein family is u	98.49
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.48
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.47
PRK12288	347	GTPase RsgA; Reviewed	98.45
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.45
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.43
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.42
PRK13796	365	GTPase YqeH; Provisional	98.39
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.37
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.36
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.35
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.34
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.3
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.3
cd03114	148	ArgK-like The function of this protein family is u	98.28
PRK13796	365	GTPase YqeH; Provisional	98.27
PRK01889	356	GTPase RsgA; Reviewed	98.26
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.23
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.22
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.21
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.19
PRK00098	298	GTPase RsgA; Reviewed	98.19
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.19
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.15
COG0523	323	Putative GTPases (G3E family) [General function pr	98.12
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.11
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.09
COG1162	301	Predicted GTPases [General function prediction onl	98.08
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.05
KOG2484	435	consensus GTPase [General function prediction only	98.03
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.02
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.98
PRK13695	174	putative NTPase; Provisional	97.98
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.98
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.95
COG1162	301	Predicted GTPases [General function prediction onl	97.95
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.93
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.92
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.86
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.86
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.82
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.81
COG3523	1188	IcmF Type VI protein secretion system component Va	97.81
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.81
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.81
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.75
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.73
PRK10867	433	signal recognition particle protein; Provisional	97.72
TIGR00959	428	ffh signal recognition particle protein. This mode	97.7
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.69
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.68
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.67
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.66
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.66
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.65
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.64
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.63
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.62
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.58
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.56
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.55
PRK07261	171	topology modulation protein; Provisional	97.54
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.53
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.51
PRK08118	167	topology modulation protein; Reviewed	97.5
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.5
KOG1533	290	consensus Predicted GTPase [General function predi	97.45
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.43
cd03111	106	CpaE_like This protein family consists of proteins	97.43
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.41
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.38
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.38
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.38
cd03116	159	MobB Molybdenum is an essential trace element in t	97.38
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.33
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.32
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.32
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.31
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.3
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.29
PRK01889	356	GTPase RsgA; Reviewed	97.29
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.29
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.27
PRK05480	209	uridine/cytidine kinase; Provisional	97.25
smart00382	148	AAA ATPases associated with a variety of cellular	97.25
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.25
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.24
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.23
PF00004	132	AAA: ATPase family associated with various cellula	97.21
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.21
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.21
PRK13851	344	type IV secretion system protein VirB11; Provision	97.21
PRK03839	180	putative kinase; Provisional	97.2
PRK06217	183	hypothetical protein; Validated	97.2
PRK14530	215	adenylate kinase; Provisional	97.2
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.19
PRK08233	182	hypothetical protein; Provisional	97.18
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.18
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.17
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.15
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.14
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.14
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.13
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.13
PRK05439	311	pantothenate kinase; Provisional	97.13
PRK06547	172	hypothetical protein; Provisional	97.13
PRK14738	206	gmk guanylate kinase; Provisional	97.12
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.11
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.1
PRK14532	188	adenylate kinase; Provisional	97.1
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.09
PRK14531	183	adenylate kinase; Provisional	97.09
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.09
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.08
PHA00729	226	NTP-binding motif containing protein	97.07
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.07
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.05
PRK00625	173	shikimate kinase; Provisional	97.04
PRK00300	205	gmk guanylate kinase; Provisional	97.03
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.03
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.03
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.02
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	97.01
PRK13949	169	shikimate kinase; Provisional	97.01
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.01
PRK14737	186	gmk guanylate kinase; Provisional	97.0
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.99
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	96.99

>PLN00223 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=3.3e-39  Score=223.71  Aligned_cols=181  Identities=99%  Similarity=1.466  Sum_probs=161.8

Q ss_pred             CchhHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhh
Q 030192            1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH   80 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (181)
                      ||..++.+.++...++.++|+++|++|||||||++++..+.+..+.||.+.++..++..++.+++||+||+++++..|..
T Consensus         1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~   80 (181)
T PLN00223          1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH   80 (181)
T ss_pred             CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence            78778888777777788999999999999999999999887777788999888888888999999999999999999999


Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      +++++|++|+|||+++++++.....++...+.+....++|+++++||+|+.+....+++.+.+++.......+.++++||
T Consensus        81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa  160 (181)
T PLN00223         81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
T ss_pred             HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence            99999999999999999999999888888877655567999999999999887777888888887766666778889999


Q ss_pred             cCCCChHHHHHHHHHHhhhcC
Q 030192          161 TSGEGLYEGLDWLSNNIASKA  181 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~~~  181 (181)
                      ++|+|++++|+++.+.+.+||
T Consensus       161 ~~g~gv~e~~~~l~~~~~~~~  181 (181)
T PLN00223        161 TSGEGLYEGLDWLSNNIANKA  181 (181)
T ss_pred             CCCCCHHHHHHHHHHHHhhcC
Confidence            999999999999999999886

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=4.1e-38  Score=218.50  Aligned_cols=180  Identities=78%  Similarity=1.279  Sum_probs=159.3

Q ss_pred             CchhHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhh
Q 030192            1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH   80 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (181)
                      ||++++.+.++.+.++.++|+++|++|||||||++++..+.+....||.+..+..+...++.+++||+||+++++..+..
T Consensus         1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~   80 (182)
T PTZ00133          1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH   80 (182)
T ss_pred             CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence            89889899998888889999999999999999999998877777778888888778888999999999999999999999


Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      +++.+|++|+|+|+++++++.....++...+......++|+++++||.|+.+....+++...++...++...++++++||
T Consensus        81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa  160 (182)
T PTZ00133         81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA  160 (182)
T ss_pred             HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence            99999999999999999999999888888877654457899999999999776666677777777666667788889999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030192          161 TSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~~  180 (181)
                      ++|.|++++|+++.+.+.++
T Consensus       161 ~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        161 TTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999887764

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=100.00  E-value=2.8e-36  Score=208.19  Aligned_cols=169  Identities=87%  Similarity=1.368  Sum_probs=147.2

Q ss_pred             HhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +....++.++|+++|++|+|||||++++..+.+..+.||.+.....+....+.+.+||+||+.++...+..+++++|+++
T Consensus         6 ~~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177        6 SKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            33344667999999999999999999998777766778888887777788899999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +|+|+++++++....+++...+.+....++|+++|+||+|+.+....+++.+.++...++...+.++++||++|.|++++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  165 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG  165 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence            99999999999999999998887655567999999999999876666778777777766667788889999999999999


Q ss_pred             HHHHHHHhh
Q 030192          170 LDWLSNNIA  178 (181)
Q Consensus       170 ~~~i~~~~~  178 (181)
                      |++|.+.+.
T Consensus       166 ~~~l~~~~~  174 (175)
T smart00177      166 LTWLSNNLK  174 (175)
T ss_pred             HHHHHHHhc
Confidence            999988754

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04149 Arf6 Arf6 subfamily

Probab=100.00  E-value=2.6e-36  Score=207.04  Aligned_cols=163  Identities=75%  Similarity=1.285  Sum_probs=142.5

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +.++.++|+++|++|+|||||++++..+.+..+.||.+.....+...++.+++||+||++++...+..+++++|++++||
T Consensus         5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~   84 (168)
T cd04149           5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV   84 (168)
T ss_pred             cCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence            44567999999999999999999998887777778888887777788899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      |++++.++.+...++.+.+......++|+++|+||+|+.+....+++.+.++....++..++++++||++|.|++++|++
T Consensus        85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~  164 (168)
T cd04149          85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW  164 (168)
T ss_pred             eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence            99999999999999988887654467999999999999766566777777766656666778999999999999999999


Q ss_pred             HHH
Q 030192          173 LSN  175 (181)
Q Consensus       173 i~~  175 (181)
                      |.+
T Consensus       165 l~~  167 (168)
T cd04149         165 LSS  167 (168)
T ss_pred             Hhc
Confidence            864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=8.8e-35  Score=200.50  Aligned_cols=173  Identities=54%  Similarity=1.000  Sum_probs=159.9

Q ss_pred             HHHHHHhhhc-ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccc
Q 030192            5 FTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ   83 (181)
Q Consensus         5 ~~~~~~~~~~-~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   83 (181)
                      |+.+++.... ++..+|+++|+.||||||+++++..+......||.+++...+...++.+.+||.+|+..++..|..+++
T Consensus         1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~   80 (175)
T PF00025_consen    1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ   80 (175)
T ss_dssp             HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred             CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence            4567777765 899999999999999999999999888878899999999999999999999999999999999999999


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc-CcceEEEEccccC
Q 030192           84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATS  162 (181)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~  162 (181)
                      ++|++|||+|+++++.+.+....+..++......++|+++++||.|+.+....+++...+.+..+. ...+.++.||+.+
T Consensus        81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~  160 (175)
T PF00025_consen   81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT  160 (175)
T ss_dssp             TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred             ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence            999999999999999999999999999998777889999999999999888888999888888776 7889999999999


Q ss_pred             CCChHHHHHHHHHHh
Q 030192          163 GEGLYEGLDWLSNNI  177 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~  177 (181)
                      |.|+.+.++||.+.+
T Consensus       161 g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  161 GEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TBTHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcC
Confidence            999999999998864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=100.00  E-value=2.8e-35  Score=200.24  Aligned_cols=158  Identities=93%  Similarity=1.436  Sum_probs=137.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   97 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (181)
                      +||+++|.+|||||||++++..+.+..+.||.+.....+....+.+.+||+||++++...+..+++++|++++|+|++++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~   80 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence            58999999999999999999887777778888887777778899999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192           98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                      .++....+++...+......++|+++++||+|+.+....+++...++...++...+.++++||++|.|++++|++|.+
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150          81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            999999998988876654457999999999999765555666666666656667788999999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-35  Score=196.71  Aligned_cols=180  Identities=83%  Similarity=1.314  Sum_probs=173.9

Q ss_pred             CchhHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhh
Q 030192            1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH   80 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (181)
                      ||..++++...++.++..+|+++|-.++||||++.++..+++....||+|+++..+.+.++.|.+||..|+++++..|.+
T Consensus         1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~   80 (181)
T KOG0070|consen    1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH   80 (181)
T ss_pred             CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence            89999999999999999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      |+++.+++|||+|+++++++.+....+..++.+....+.|+++.+||.|++......++.+.+.+..++...|++..|||
T Consensus        81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a  160 (181)
T KOG0070|consen   81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA  160 (181)
T ss_pred             hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence            99999999999999999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030192          161 TSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~~  180 (181)
                      .+|+|+.+.++++.+.+.++
T Consensus       161 ~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  161 ISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             cccccHHHHHHHHHHHHhcc
Confidence            99999999999999988765

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.1e-36  Score=200.05  Aligned_cols=163  Identities=20%  Similarity=0.381  Sum_probs=140.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE--E--EECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~--~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      .+.+|++++|+.++||||||++|+.+.|. .+.+|+|+.+..  +  .+..+++++|||+|+++|+.+.+.|++++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            45699999999999999999999999998 568899988743  3  335689999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +|||+++..+|++...|+.+...+....+..+++|+||.||.+..   ++....+...++..+..|+++||+.|.||+.+
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr---qvs~eEg~~kAkel~a~f~etsak~g~NVk~l  176 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR---QVSIEEGERKAKELNAEFIETSAKAGENVKQL  176 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh---hhhHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence            999999999999999999999998776678899999999998863   33333344555566678999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030192          170 LDWLSNNIASK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |..|..++.++
T Consensus       177 FrrIaa~l~~~  187 (221)
T KOG0094|consen  177 FRRIAAALPGM  187 (221)
T ss_pred             HHHHHHhccCc
Confidence            99998887653

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-36  Score=201.76  Aligned_cols=161  Identities=20%  Similarity=0.373  Sum_probs=134.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE----EEECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ...+||+++|+.|+|||+|+.||..+.+. ++..|+|+++..    +++..+++++|||+|+++|+.+..+|++++|++|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            45689999999999999999999999988 568899987743    4456789999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceE-EEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWY-IQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~S~~~~~gv~  167 (181)
                      +|||+++.+||+.+..|+.++-++.. .+.|.++|+||+|+.+..... +..+    .++...+.+ ++++|||++.||+
T Consensus        87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~----~fa~~~~~~~f~ETSAK~~~NVe  161 (205)
T KOG0084|consen   87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQ----EFADELGIPIFLETSAKDSTNVE  161 (205)
T ss_pred             EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHH----HHHHhcCCcceeecccCCccCHH
Confidence            99999999999999999998877655 568999999999997753221 1111    122223334 8999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      +.|..+...+.++
T Consensus       162 ~~F~~la~~lk~~  174 (205)
T KOG0084|consen  162 DAFLTLAKELKQR  174 (205)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999877653

>cd04154 Arl2 Arl2 subfamily

Probab=100.00  E-value=4.2e-34  Score=197.02  Aligned_cols=165  Identities=49%  Similarity=0.897  Sum_probs=140.7

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      .-++...++|+++|++|||||||++++.+..+....||.++....+..+.+.+.+||+||++.++..+..+++.+|++++
T Consensus         8 ~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154           8 QKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             hhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            34446779999999999999999999998877666788887777777788999999999999988889999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |+|++++.++.....++..++......++|+++|+||+|+.+....+++...++....+...++++++||++|.|++++|
T Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  167 (173)
T cd04154          88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGI  167 (173)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHH
Confidence            99999999998888888888765555689999999999998765666676666654445567889999999999999999


Q ss_pred             HHHHH
Q 030192          171 DWLSN  175 (181)
Q Consensus       171 ~~i~~  175 (181)
                      +++.+
T Consensus       168 ~~l~~  172 (173)
T cd04154         168 DWLVD  172 (173)
T ss_pred             HHHhc
Confidence            99864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=100.00  E-value=6.5e-34  Score=196.25  Aligned_cols=170  Identities=54%  Similarity=0.975  Sum_probs=145.3

Q ss_pred             HHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccc
Q 030192            6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT   85 (181)
Q Consensus         6 ~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (181)
                      ..+.+.....+.++|+++|++|+|||||++++..+.+....||.+..+..+..+++.+.+||+||++++...+..+++.+
T Consensus         4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   83 (174)
T cd04153           4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNT   83 (174)
T ss_pred             hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcC
Confidence            44555554456799999999999999999999988877778888888888888899999999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      |++++|+|+++++++.....++..++......++|+++++||+|+.+....+++.+.+.....+...++++++||++|.|
T Consensus        84 d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~g  163 (174)
T cd04153          84 DAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEG  163 (174)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCC
Confidence            99999999999988988888888887765556799999999999976555667777776655556678899999999999


Q ss_pred             hHHHHHHHHH
Q 030192          166 LYEGLDWLSN  175 (181)
Q Consensus       166 v~~~~~~i~~  175 (181)
                      ++++|++|.+
T Consensus       164 i~e~~~~l~~  173 (174)
T cd04153         164 LPEGLDWIAS  173 (174)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-34  Score=192.82  Aligned_cols=160  Identities=21%  Similarity=0.399  Sum_probs=135.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEE--EEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ...+|++++|+.++|||||+-||..+.|++. .||+|-.+.+  +..  ..++|.||||+|+++|..+.+.|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            4578999999999999999999999999975 8898866644  333  4589999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||+++.+||..+..|+.++-.+.. +++.+.+++||+|+.+..  ..++....     +...+..++++|||+|.|++
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~y-----Ae~~gll~~ETSAKTg~Nv~  156 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAY-----AESQGLLFFETSAKTGENVN  156 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHH-----HHhcCCEEEEEecccccCHH
Confidence            99999999999999999999988766 778888999999998732  33333222     22345579999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      ++|..|.+.+...
T Consensus       157 ~if~~Ia~~lp~~  169 (200)
T KOG0092|consen  157 EIFQAIAEKLPCS  169 (200)
T ss_pred             HHHHHHHHhccCc
Confidence            9999999987653

>cd04158 ARD1 ARD1 subfamily

Probab=100.00  E-value=1e-33  Score=194.38  Aligned_cols=161  Identities=62%  Similarity=1.076  Sum_probs=137.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   98 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (181)
                      ||+++|++|||||||++++.+..+..+.||.+..+..+...++.+.+||+||+.++...+..+++.+|++++|+|+++++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~   80 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD   80 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence            58999999999999999999988777788888888778888999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192           99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      ++.+...|+..++......+.|+++++||+|+.+....+++...+..... ....+.++++||++|.|++++|+++.+.+
T Consensus        81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~  160 (169)
T cd04158          81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL  160 (169)
T ss_pred             HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence            99999999999987655556899999999999766556666655543322 23356788999999999999999999877


Q ss_pred             hh
Q 030192          178 AS  179 (181)
Q Consensus       178 ~~  179 (181)
                      .+
T Consensus       161 ~~  162 (169)
T cd04158         161 VA  162 (169)
T ss_pred             hh
Confidence            65

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=100.00  E-value=1.3e-33  Score=183.93  Aligned_cols=176  Identities=45%  Similarity=0.830  Sum_probs=162.2

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccc
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN   84 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (181)
                      ++.+.+.-.+++.++|+++|..|||||+++++|.+.......||.+++..+...+++.+++||.+|+...+..|++|+..
T Consensus         4 lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfes   83 (185)
T KOG0073|consen    4 LSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFES   83 (185)
T ss_pred             HHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhc
Confidence            34455555567899999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEccccCC
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSG  163 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~  163 (181)
                      +|++|+|+|++++.++++..+.+...+......+.|++++.||.|+..+...+++...+++..+ +..+|+++.||+.+|
T Consensus        84 tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tg  163 (185)
T KOG0073|consen   84 TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTG  163 (185)
T ss_pred             cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccc
Confidence            9999999999999999999999999888877788999999999999988888999998988877 788999999999999


Q ss_pred             CChHHHHHHHHHHhhhc
Q 030192          164 EGLYEGLDWLSNNIASK  180 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~~~  180 (181)
                      +++.+.++|+++.+.++
T Consensus       164 e~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  164 EDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             ccHHHHHHHHHHHHHHH
Confidence            99999999999988764

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=100.00  E-value=3.5e-33  Score=194.16  Aligned_cols=174  Identities=34%  Similarity=0.592  Sum_probs=147.4

Q ss_pred             hHHHHHHhhhc-ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcc
Q 030192            4 TFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF   82 (181)
Q Consensus         4 ~~~~~~~~~~~-~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   82 (181)
                      +|.++++-+.. ++.++|+++|++|+|||||++++.++.+....||.+.....+...++++.+||+||+.+++..+..++
T Consensus         3 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~   82 (184)
T smart00178        3 WFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYF   82 (184)
T ss_pred             HHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence            56777773322 78899999999999999999999998776666777777777777889999999999999999999999


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc-------CcceEE
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYI  155 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~  155 (181)
                      +++|++++|+|+++++++.....++..++......++|+++++||+|+......+++...+++....       ...+.+
T Consensus        83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i  162 (184)
T smart00178       83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEV  162 (184)
T ss_pred             CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEE
Confidence            9999999999999999898888888887766555679999999999998777778888888765432       246779


Q ss_pred             EEccccCCCChHHHHHHHHHHh
Q 030192          156 QSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       156 ~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      ++|||++|.|++++++|+..++
T Consensus       163 ~~~Sa~~~~g~~~~~~wl~~~~  184 (184)
T smart00178      163 FMCSVVRRMGYGEGFKWLSQYI  184 (184)
T ss_pred             EEeecccCCChHHHHHHHHhhC
Confidence            9999999999999999998653

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04151 Arl1 Arl1 subfamily

Probab=100.00  E-value=4.6e-33  Score=189.15  Aligned_cols=157  Identities=66%  Similarity=1.132  Sum_probs=133.4

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   98 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (181)
                      ||+++|++|+|||||++++..+.+....||.+.....+.+.+..+++||+||++++...+..+++.+|++++|+|++++.
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   80 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD   80 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence            68999999999999999998887776778888877778888899999999999999999999999999999999999988


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192           99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                      ++.....++...+......++|+++++||+|+.+.....++...+........+++++++||++|.|++++|+++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151          81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            88777777877766554467999999999999765555666666655444555678999999999999999999865

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=2.2e-33  Score=197.09  Aligned_cols=157  Identities=20%  Similarity=0.369  Sum_probs=123.4

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      ++|+++|+.|+|||||+++|..+.+.. +.+|.+..+  ..+...  .+.+++|||+|++++..++..+++++|++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            479999999999999999999988864 456766544  334443  488999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccC-cceEEEEccccCCCChHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQ-RHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |++++++++.+..|+..+ ......+.|+++|+||+|+.+..... +..+.    .++. .++.+++|||++|.|++++|
T Consensus        81 Dvtd~~Sf~~l~~w~~~i-~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~----~a~~~~~~~~~etSAktg~gV~e~F  155 (202)
T cd04120          81 DITKKETFDDLPKWMKMI-DKYASEDAELLLVGNKLDCETDREISRQQGEK----FAQQITGMRFCEASAKDNFNVDEIF  155 (202)
T ss_pred             ECcCHHHHHHHHHHHHHH-HHhCCCCCcEEEEEECcccccccccCHHHHHH----HHHhcCCCEEEEecCCCCCCHHHHH
Confidence            999999999998877654 43334679999999999996532211 11111    1111 24579999999999999999


Q ss_pred             HHHHHHhhh
Q 030192          171 DWLSNNIAS  179 (181)
Q Consensus       171 ~~i~~~~~~  179 (181)
                      .++.+.+.+
T Consensus       156 ~~l~~~~~~  164 (202)
T cd04120         156 LKLVDDILK  164 (202)
T ss_pred             HHHHHHHHH
Confidence            999987754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-34  Score=193.84  Aligned_cols=164  Identities=24%  Similarity=0.393  Sum_probs=134.2

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .....++|+++|++|||||+++.+|..+.|.. ...|+|+.+.  ++..  ..+.+++|||+|+++|+.+...|++.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            34577999999999999999999999999874 4678887764  3443  56799999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +++|||+++..+++++..|+..+-.+ ....+|.++|+||+|+....   ++....+...+...++.++|+||++|.||+
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R---~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~  163 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKR---QVSKERGEALAREYGIKFFETSAKTNFNIE  163 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccc---cccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence            99999999999999999966555444 33589999999999987632   222223333344455679999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      ++|-.+.+.+.++
T Consensus       164 eaF~~La~~i~~k  176 (207)
T KOG0078|consen  164 EAFLSLARDILQK  176 (207)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998865

>cd00879 Sar1 Sar1 subfamily

Probab=100.00  E-value=2.6e-32  Score=190.78  Aligned_cols=173  Identities=35%  Similarity=0.638  Sum_probs=143.6

Q ss_pred             HHHHHHhhh-cccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccc
Q 030192            5 FTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ   83 (181)
Q Consensus         5 ~~~~~~~~~-~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   83 (181)
                      +..+++.+. ..+..+|+++|++|||||||++++.+..+..+.||.+.....+...+.++.+||+||+.++...+..+++
T Consensus         6 ~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~   85 (190)
T cd00879           6 FYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFP   85 (190)
T ss_pred             HHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhc
Confidence            344445443 2568999999999999999999999888776777887777778888899999999999999888889999


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-----------cCcc
Q 030192           84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-----------RQRH  152 (181)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~  152 (181)
                      .+|++++|+|++++.++.....++..++......+.|+++++||+|+.+....+++...+.....           ....
T Consensus        86 ~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
T cd00879          86 EVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRP  165 (190)
T ss_pred             cCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCcee
Confidence            99999999999998889888888888887665567999999999999876666777776654322           1245


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHh
Q 030192          153 WYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       153 ~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      +.+++|||++|.|++++|+++.+.+
T Consensus       166 ~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         166 IEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EEEEEeEecCCCChHHHHHHHHhhC
Confidence            6799999999999999999998754

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-32  Score=174.17  Aligned_cols=180  Identities=70%  Similarity=1.197  Sum_probs=172.3

Q ss_pred             CchhHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhh
Q 030192            1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH   80 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (181)
                      ||.-+++++.+++..+.++|+++|..++||||++..+..+......||+|+++..+.+..+.|++||.+|+++.+..|.+
T Consensus         1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh   80 (180)
T KOG0071|consen    1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH   80 (180)
T ss_pred             CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence            77788999999999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      |+....++|+|+|+.+.+.+++..+.+.+++.+.+..+.|+++..||.|++++...+++...+++..++...|.+.++|+
T Consensus        81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a  160 (180)
T KOG0071|consen   81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA  160 (180)
T ss_pred             hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence            99999999999999999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030192          161 TSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~~  180 (181)
                      .+|.|+.+.|.|+...+.++
T Consensus       161 ~~gdgL~eglswlsnn~~~k  180 (180)
T KOG0071|consen  161 LSGDGLKEGLSWLSNNLKEK  180 (180)
T ss_pred             ccchhHHHHHHHHHhhccCC
Confidence            99999999999999877653

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=100.00  E-value=1.7e-32  Score=188.01  Aligned_cols=157  Identities=36%  Similarity=0.615  Sum_probs=136.4

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   98 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (181)
                      +|+++|++|||||||++++.+.....+.||.+.....+...++.+++||+||+.+++..+..+++++|++++|||++++.
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~   80 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD   80 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence            48999999999999999999874445678888887788889999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc---CcceEEEEccccCC------CChHHH
Q 030192           99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR---QRHWYIQSTCATSG------EGLYEG  169 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~S~~~~------~gv~~~  169 (181)
                      ++.....++..+.......++|+++|+||+|+.+.....++.+.+.+..+.   ...+++++|||++|      .|+++.
T Consensus        81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~  160 (167)
T cd04161          81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG  160 (167)
T ss_pred             HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence            999999999988876555689999999999998877777777777665542   34678999999998      899999


Q ss_pred             HHHHHH
Q 030192          170 LDWLSN  175 (181)
Q Consensus       170 ~~~i~~  175 (181)
                      |+||..
T Consensus       161 ~~wl~~  166 (167)
T cd04161         161 LRWLLA  166 (167)
T ss_pred             HHHHhc
Confidence            999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=6.8e-34  Score=184.87  Aligned_cols=162  Identities=24%  Similarity=0.405  Sum_probs=139.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccC-ccceeEE----EEEECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ...+||+++|++|+|||||+.+|..+.+....| |+|+.+.    .+.+..+++-+|||+|+++|+.+.++|++.+.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            456999999999999999999999999987655 4776653    34557789999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +|||++.+++|..+..|+.++-..-..+++..++|+||+|..+   ...+.+..++.+++....-++++||++.+||+..
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence            9999999999999988888776555556788899999999543   3456666778888888889999999999999999


Q ss_pred             HHHHHHHhhh
Q 030192          170 LDWLSNNIAS  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |+.++.++.+
T Consensus       166 FeelveKIi~  175 (209)
T KOG0080|consen  166 FEELVEKIIE  175 (209)
T ss_pred             HHHHHHHHhc
Confidence            9999998865

>cd04157 Arl6 Arl6 subfamily

Probab=100.00  E-value=1.8e-32  Score=186.74  Aligned_cols=157  Identities=50%  Similarity=0.859  Sum_probs=130.4

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCc-c-cccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCC
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEI-V-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   96 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   96 (181)
                      +|+++|++|||||||++++.+..+ . ...||.+.....+...++.+.+||+||++++...+..+++++|++++|+|+++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~   80 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD   80 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence            589999999999999999998753 2 45788887777777788999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192           97 RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS  174 (181)
Q Consensus        97 ~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~  174 (181)
                      +.++.....++..+.....  ..++|+++++||+|+.+....+++...+.........++++++||++|.|++++|+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157          81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence            9888888888777766432  24799999999999987655566666665544344566799999999999999999986


Q ss_pred             H
Q 030192          175 N  175 (181)
Q Consensus       175 ~  175 (181)
                      +
T Consensus       161 ~  161 (162)
T cd04157         161 A  161 (162)
T ss_pred             c
Confidence            4

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=5e-33  Score=197.31  Aligned_cols=161  Identities=18%  Similarity=0.295  Sum_probs=128.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   97 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (181)
                      +||+++|.+|+|||||+++|..+.+....||.+..+.......+.+.+|||+|++++...+..+++.+|++|+|||++++
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~   80 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV   80 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence            58999999999999999999999987778888877666666778999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-------------------C--CHh---HHHhhhCCC------c
Q 030192           98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-------------------M--NAA---EITDKLGLH------S  147 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-------------------~--~~~---~~~~~~~~~------~  147 (181)
                      +++..+..||..+.... ..++|+|+|+||+|+.+.                   .  ..+   .+.+.....      .
T Consensus        81 ~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~  159 (220)
T cd04126          81 QSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL  159 (220)
T ss_pred             HHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence            99999999998876542 357899999999998651                   1  111   111111100      0


Q ss_pred             ccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       148 ~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      ....+.+|++|||++|.||+++|..+++.+..
T Consensus       160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            00112579999999999999999999987653

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2.1e-33  Score=193.28  Aligned_cols=160  Identities=19%  Similarity=0.248  Sum_probs=125.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE-EE--EECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~-~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      .++|+++|.+|+|||||++++..+.+. .+.||.+..+. .+  .+..+.+.+||+||++++..++..+++.+|++++||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            479999999999999999999998886 44677664443 23  334578999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      |++++.++.....|+..+.......++|+++|+||+|+.+......   .......+..++++++|||++|.|++++|++
T Consensus        82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~---~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~  158 (172)
T cd04141          82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTT---EEGRNLAREFNCPFFETSAALRHYIDDAFHG  158 (172)
T ss_pred             ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCH---HHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence            9999999999988765554433335799999999999865422211   1111122334568999999999999999999


Q ss_pred             HHHHhhh
Q 030192          173 LSNNIAS  179 (181)
Q Consensus       173 i~~~~~~  179 (181)
                      +++.+.+
T Consensus       159 l~~~~~~  165 (172)
T cd04141         159 LVREIRR  165 (172)
T ss_pred             HHHHHHH
Confidence            9987764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=2.1e-33  Score=196.31  Aligned_cols=163  Identities=20%  Similarity=0.291  Sum_probs=124.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +.+||+++|++|+|||||+.++..+.+. .+.||.+..+.   .+....+.+.+|||+|+++++.++..+++++|++++|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            4589999999999999999999998885 45778775543   2334568899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhh--------hCCCcccCcc-eEEEEcccc
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDK--------LGLHSLRQRH-WYIQSTCAT  161 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~--------~~~~~~~~~~-~~~~~~S~~  161 (181)
                      ||++++++++.+...|...+... ..++|+++|+||.|+.+... .+.+.+.        .....++..+ ++++++||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            99999999999976444433332 25799999999999965422 1111110        0111122334 589999999


Q ss_pred             CCCChHHHHHHHHHHhhh
Q 030192          162 SGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~~~  179 (181)
                      +|.|++++|.++.+.+..
T Consensus       161 ~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999987754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=2.5e-33  Score=195.07  Aligned_cols=158  Identities=17%  Similarity=0.261  Sum_probs=126.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ...+||+++|+.|+|||||+.+|..+.+... .++.+..+  ..+..  ..+.+++||++|++++..++..+++.+|+++
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            3568999999999999999999998877543 45555443  33333  4478999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||++++.+++.+..|+.++....  ++.|+++|+||+|+.+..  ..++....     ++..++++++|||++|.||+
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~-----a~~~~~~~~e~SAk~g~~V~  156 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAY-----AERNGMTFFEVSPLCNFNIT  156 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHH-----HHHcCCEEEEecCCCCCCHH
Confidence            9999999999999988887775542  579999999999996532  22222221     23345679999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|+++.+.+..
T Consensus       157 ~~F~~l~~~i~~  168 (189)
T cd04121         157 ESFTELARIVLM  168 (189)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987764

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-33  Score=188.35  Aligned_cols=161  Identities=22%  Similarity=0.372  Sum_probs=136.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE----EEEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      -.+|+.++|+.|+|||+|+.+|....|.+. ..|.|+++    ..++...+++++|||+|++.|+....+|++.+.++++
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL   84 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL   84 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence            468999999999999999999999998754 56777765    3466688999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |||++..++|..+..|+.+...+.. ++.-+++++||+|+....   ++.++.+..++++.+..++++||+++.||+|.|
T Consensus        85 Vydit~r~sF~hL~~wL~D~rq~~~-~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF  160 (216)
T KOG0098|consen   85 VYDITRRESFNHLTSWLEDARQHSN-ENMVIMLIGNKSDLEARR---EVSKEEGEAFAREHGLIFMETSAKTAENVEEAF  160 (216)
T ss_pred             EEEccchhhHHHHHHHHHHHHHhcC-CCcEEEEEcchhhhhccc---cccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence            9999999999999999999988754 688999999999997642   334444445555566678899999999999999


Q ss_pred             HHHHHHhhhc
Q 030192          171 DWLSNNIASK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      ......+..+
T Consensus       161 ~nta~~Iy~~  170 (216)
T KOG0098|consen  161 INTAKEIYRK  170 (216)
T ss_pred             HHHHHHHHHH
Confidence            9988877653

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=100.00  E-value=3.4e-32  Score=189.10  Aligned_cols=164  Identities=50%  Similarity=0.878  Sum_probs=132.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE-----CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      +.++|+++|++|||||||++++....+....||.+........     ..+.+.+|||||++++...+..+++++|++++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999988877667777655543322     56899999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEccccCCCChHHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      |+|+++++++.....++..+.......++|+++++||+|+.+....+++...+..... ....++++++||++|.|++++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  161 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG  161 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence            9999998888888888777766544467999999999998765445555554443322 223467889999999999999


Q ss_pred             HHHHHHHhhh
Q 030192          170 LDWLSNNIAS  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      ++++.+.+.+
T Consensus       162 ~~~l~~~l~~  171 (183)
T cd04152         162 LEKLYEMILK  171 (183)
T ss_pred             HHHHHHHHHH
Confidence            9999988754

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=9e-33  Score=191.34  Aligned_cols=164  Identities=15%  Similarity=0.208  Sum_probs=124.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      +..+||+++|++|+|||||++++..+.+.. +.||.+..+.   .+....+.+.+|||+|+++|..++..+++++|++++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            567899999999999999999999998864 4677765442   233356789999999999999999999999999999


Q ss_pred             EEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-H--------hHHHhhhCCCcccCcce-EEEEcc
Q 030192           91 VVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN-A--------AEITDKLGLHSLRQRHW-YIQSTC  159 (181)
Q Consensus        91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~--------~~~~~~~~~~~~~~~~~-~~~~~S  159 (181)
                      |||+++++++.++ ..|+..+... . ++.|+++|+||+|+.+... .        ..+....+...+++.+. +|++||
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~-~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEF-C-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHH-C-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            9999999999997 4555554332 2 5799999999999864210 0        01111112223334453 799999


Q ss_pred             ccCCCC-hHHHHHHHHHHhhhc
Q 030192          160 ATSGEG-LYEGLDWLSNNIASK  180 (181)
Q Consensus       160 ~~~~~g-v~~~~~~i~~~~~~~  180 (181)
                      |++|.| |+++|..++..+.++
T Consensus       161 Ak~~~n~v~~~F~~~~~~~~~~  182 (182)
T cd04172         161 ALQSENSVRDIFHVATLACVNK  182 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHHhcC
Confidence            999998 999999999876653

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=100.00  E-value=3e-32  Score=186.18  Aligned_cols=155  Identities=40%  Similarity=0.682  Sum_probs=133.2

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   97 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (181)
                      +|+++|++|+|||||++++.++.+. .+.||.+.....+...++.+.+||+||+++++..+..+++++|++++|||++++
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~   80 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS   80 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence            4799999999999999999988765 457888887777888899999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEccccC------CCChHHHH
Q 030192           98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATS------GEGLYEGL  170 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~------~~gv~~~~  170 (181)
                      .++.....|+..+....  .++|+++|+||+|+......+++...++...+ ++.+++++++||++      ++||+++|
T Consensus        81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~  158 (164)
T cd04162          81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL  158 (164)
T ss_pred             HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence            88988888888876543  57999999999999877777777666655544 55688999999999      99999999


Q ss_pred             HHHHH
Q 030192          171 DWLSN  175 (181)
Q Consensus       171 ~~i~~  175 (181)
                      +.++.
T Consensus       159 ~~~~~  163 (164)
T cd04162         159 SQLIN  163 (164)
T ss_pred             HHHhc
Confidence            98763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=2.8e-32  Score=187.83  Aligned_cols=160  Identities=17%  Similarity=0.212  Sum_probs=122.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      +||+++|++|+|||||+.++..+.+. .+.||.+..+.   .+++..+++.+|||+|++++..++..+++++|++++|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            68999999999999999999999887 45777765442   223345899999999999999999999999999999999


Q ss_pred             CCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-------HhHHHhhhCCCcccCcce-EEEEccccCCC
Q 030192           94 SNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRQRHW-YIQSTCATSGE  164 (181)
Q Consensus        94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~  164 (181)
                      ++++++++++. .|+..+....  .+.|+++|+||+|+.+...       ...+.........+..+. .+++|||++|.
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999984 5666554332  4799999999999965311       001111111122233344 58999999999


Q ss_pred             ChHHHHHHHHHHhhh
Q 030192          165 GLYEGLDWLSNNIAS  179 (181)
Q Consensus       165 gv~~~~~~i~~~~~~  179 (181)
                      ||+++|+.+.+.+..
T Consensus       160 nV~~~F~~~~~~~~~  174 (176)
T cd04133         160 NVKAVFDAAIKVVLQ  174 (176)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999987643

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.5e-32  Score=188.73  Aligned_cols=161  Identities=16%  Similarity=0.204  Sum_probs=121.4

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE-E--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      ++||+++|++|+|||||++++.++.+. .+.||.+..+. .  +....+.+.+|||+|++++......+++++|++++||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            479999999999999999999998876 44677665442 2  2335678999999999999999999999999999999


Q ss_pred             ECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-H--------hHHHhhhCCCcccCcce-EEEEcccc
Q 030192           93 DSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN-A--------AEITDKLGLHSLRQRHW-YIQSTCAT  161 (181)
Q Consensus        93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~--------~~~~~~~~~~~~~~~~~-~~~~~S~~  161 (181)
                      |+++++++..+ ..|+..+... . ++.|+++|+||+|+.+... .        ..+........++..+. ++++|||+
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~-~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEF-C-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHH-C-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            99999999996 5565555432 2 5799999999999854100 0        00111112222333444 78999999


Q ss_pred             CCCC-hHHHHHHHHHHhhh
Q 030192          162 SGEG-LYEGLDWLSNNIAS  179 (181)
Q Consensus       162 ~~~g-v~~~~~~i~~~~~~  179 (181)
                      +|.| |+++|..++....+
T Consensus       159 ~~~~~v~~~F~~~~~~~~~  177 (178)
T cd04131         159 TSEKSVRDIFHVATMACLN  177 (178)
T ss_pred             cCCcCHHHHHHHHHHHHhc
Confidence            9995 99999999986554

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=100.00  E-value=9.6e-32  Score=182.59  Aligned_cols=157  Identities=69%  Similarity=1.199  Sum_probs=138.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   98 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (181)
                      ||+++|++|||||||++++.+..+....++.+.....+...+..+.+||+||+..+...+..++..+|++++|+|+++++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~   80 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE   80 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence            68999999999999999999998767788888888888888999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192           99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                      ++.....++..+.......+.|+++++||+|+......+++.+.+.........++++++||++|.|++++|++|..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878          81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            99999999988888665578999999999999876666677777665545556778999999999999999999864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.8e-32  Score=189.07  Aligned_cols=160  Identities=16%  Similarity=0.203  Sum_probs=121.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      .+||+++|++|+|||||++++..+.+. .+.||.+..+. .+..  ..+.+.+||++|++++...+..+++++|++++||
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            368999999999999999999998885 55778765543 3333  3478999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHh--------hhCCCcccCcc-eEEEEccccC
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITD--------KLGLHSLRQRH-WYIQSTCATS  162 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~--------~~~~~~~~~~~-~~~~~~S~~~  162 (181)
                      |++++++++.+..+|...+.... .++|+++|+||+|+.+..... .+..        .......+..+ +.++++||++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            99999999999764544444322 579999999999986532111 1100        00001122233 6899999999


Q ss_pred             CCChHHHHHHHHHHh
Q 030192          163 GEGLYEGLDWLSNNI  177 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~  177 (181)
                      |.|++++|+.++...
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=100.00  E-value=9.4e-32  Score=182.95  Aligned_cols=157  Identities=49%  Similarity=0.918  Sum_probs=131.6

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE-CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   97 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (181)
                      +|+++|++|+|||||++++.+..+....||.+.....+.. ..+.+.+||+||+..+...+..+++.+|++++|+|++++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~   80 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE   80 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence            5899999999999999999999887777888876665554 457999999999999998899899999999999999998


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEccccCCCChHHHHHHHHH
Q 030192           98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                      .++.....++..+++.....+.|+++++||+|+......+++...+....+ ...++++++|||++|.|++++|++|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156          81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            888888888888877655468999999999999765555666666554333 335678999999999999999998864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04155 Arl3 Arl3 subfamily

Probab=100.00  E-value=1.7e-31  Score=183.92  Aligned_cols=164  Identities=50%  Similarity=0.853  Sum_probs=141.8

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+..+.++|+++|++|+|||||++++.+..+....|+.+++...+...+..+.+||+||+..+...+..+++.+|++++|
T Consensus         9 ~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v   88 (173)
T cd04155           9 RKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYV   88 (173)
T ss_pred             hccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence            34456899999999999999999999998776677888887777888889999999999998888888889999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      +|+++..++.....++..........++|+++++||+|+.+....+++.+.++...+....++++++||++|.|++++|+
T Consensus        89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  168 (173)
T cd04155          89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMN  168 (173)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHH
Confidence            99998888888888888877765556799999999999987766777877777766666677888999999999999999


Q ss_pred             HHHH
Q 030192          172 WLSN  175 (181)
Q Consensus       172 ~i~~  175 (181)
                      ++.+
T Consensus       169 ~l~~  172 (173)
T cd04155         169 WVCK  172 (173)
T ss_pred             HHhc
Confidence            9875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.7e-32  Score=186.80  Aligned_cols=157  Identities=20%  Similarity=0.340  Sum_probs=125.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE--EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+||+++|++|+|||||++++.++.+... .+|.+..+.  .+.  ...+.+.+||+||++++...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            37999999999999999999999887644 456665543  233  3457899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      ||++++++++.+..|+....... ..+.|+++|+||+|+.+...  .++....     ++..+++++++||++|.|++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~e~  155 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQF-----ADENGLLFLECSAKTGENVEDA  155 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHH
Confidence            99999999999999887765432 25789999999999976432  2222221     2233568999999999999999


Q ss_pred             HHHHHHHhhh
Q 030192          170 LDWLSNNIAS  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |..++..+.+
T Consensus       156 f~~l~~~~~~  165 (166)
T cd04122         156 FLETAKKIYQ  165 (166)
T ss_pred             HHHHHHHHhh
Confidence            9999988765

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.1e-32  Score=182.96  Aligned_cols=164  Identities=15%  Similarity=0.272  Sum_probs=132.7

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE----EEECCEEEEEEEcCCCCCcccchhhccccccE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .++.-+||.+.|++|+|||||+|++.+.+|.. +..|+|..+.+    ++...+.+++|||+|+++|+.+.-.+++.+|.
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            44667999999999999999999999999874 56788765533    34456789999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCC---CCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcccCcceEEEEcccc
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELR---DAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCAT  161 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~piivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~S~~  161 (181)
                      .++|||++++++++.+..|..+++.+..-.   .-|.|+++||+|+....   ......+....   .+.+++|||+|||
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~---s~gnipyfEtSAK  161 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK---SKGNIPYFETSAK  161 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH---hcCCceeEEeccc
Confidence            999999999999999999999998876533   35999999999986631   11122221111   1346799999999


Q ss_pred             CCCChHHHHHHHHHHhhh
Q 030192          162 SGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~~~  179 (181)
                      ...||+++|+.+...+++
T Consensus       162 ~~~NV~~AFe~ia~~aL~  179 (210)
T KOG0394|consen  162 EATNVDEAFEEIARRALA  179 (210)
T ss_pred             ccccHHHHHHHHHHHHHh
Confidence            999999999999987654

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=3.3e-32  Score=190.09  Aligned_cols=160  Identities=18%  Similarity=0.248  Sum_probs=126.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ...+||+++|++|+|||||++++.++.+. ...||.+..+.   .++...+.+++|||||++++..++..+++.+|++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            45689999999999999999999998875 44566665443   233455789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |||++++++++....|+..+.......+.|+++|+||+|+.+..  ..++....     .+..+++++++||++|.|+++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~-----~~~~~~~~~e~Sak~~~gi~~  157 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQEL-----AKSFGIPFLETSAKQRVNVDE  157 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH-----HHHhCCEEEEeeCCCCCCHHH
Confidence            99999999999999888877665444579999999999986532  21111111     112235799999999999999


Q ss_pred             HHHHHHHHhhh
Q 030192          169 GLDWLSNNIAS  179 (181)
Q Consensus       169 ~~~~i~~~~~~  179 (181)
                      +|.++.+.+.+
T Consensus       158 ~~~~l~~~l~~  168 (189)
T PTZ00369        158 AFYELVREIRK  168 (189)
T ss_pred             HHHHHHHHHHH
Confidence            99999987754

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.1e-31  Score=191.11  Aligned_cols=159  Identities=23%  Similarity=0.326  Sum_probs=129.1

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEE----ECCEEEEEEEcCCCCCcccchhhccccccE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .....+||+++|++|||||||++++..+.+. .+.||.+..+....    ...+.+.+|||+|++++...+..+++.+|+
T Consensus         9 ~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   88 (219)
T PLN03071          9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (219)
T ss_pred             cCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence            3467899999999999999999999988876 45778876655433    245799999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      +|+|||+++++++..+..|+..+....  .+.|+++|+||+|+.+... .+++      ...+..++++++|||++|.|+
T Consensus        89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~~i  160 (219)
T PLN03071         89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYEISAKSNYNF  160 (219)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH------HHHHhcCCEEEEcCCCCCCCH
Confidence            999999999999999988887776432  5799999999999864322 2222      112234567999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030192          167 YEGLDWLSNNIAS  179 (181)
Q Consensus       167 ~~~~~~i~~~~~~  179 (181)
                      +++|.++.+.+.+
T Consensus       161 ~~~f~~l~~~~~~  173 (219)
T PLN03071        161 EKPFLYLARKLAG  173 (219)
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999988753

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=4.1e-32  Score=188.17  Aligned_cols=160  Identities=19%  Similarity=0.373  Sum_probs=126.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--EE------------ECCEEEEEEEcCCCCCcccchhh
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VE------------YKNISFTVWDVGGQDKIRPLWRH   80 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~~------------~~~~~~~i~D~~g~~~~~~~~~~   80 (181)
                      ..+||+++|++|+|||||++++.++.+.. ..+|.+..+..  +.            ...+.+.+||+||++++...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            45899999999999999999999988764 46666654432  22            23478999999999999999999


Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQST  158 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      +++++|++++|||+++++++..+..|+..+.......++|+++|+||+|+.+..  ..++..+.     .+..+.+++++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~  157 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKAL-----ADKYGIPYFET  157 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHH-----HHHcCCeEEEE
Confidence            999999999999999999999999988877665444678999999999987532  21222111     11223468999


Q ss_pred             cccCCCChHHHHHHHHHHhhhc
Q 030192          159 CATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       159 S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      ||++|.|++++|+++.+.+.++
T Consensus       158 Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         158 SAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             eCCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999987764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=4.6e-32  Score=184.92  Aligned_cols=156  Identities=21%  Similarity=0.300  Sum_probs=121.4

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      +||+++|++|||||||++++..+.+.. ..||.+..+ ..+..  ..+.+.+|||||++++...+..+++++|++++|||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence            699999999999999999999888764 355554222 22333  34678899999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      +++++++.....|+..+.......++|+++|+||+|+.+..... +....+    .+..+.+++++||++|.|++++|.+
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~l~~~  157 (163)
T cd04136          82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQAL----ARQWGCPFYETSAKSKINVDEVFAD  157 (163)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHH----HHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999888887765544679999999999986532211 111111    1122357999999999999999999


Q ss_pred             HHHHh
Q 030192          173 LSNNI  177 (181)
Q Consensus       173 i~~~~  177 (181)
                      +.+.+
T Consensus       158 l~~~~  162 (163)
T cd04136         158 LVRQI  162 (163)
T ss_pred             HHHhc
Confidence            98765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=3.4e-31  Score=181.34  Aligned_cols=155  Identities=22%  Similarity=0.370  Sum_probs=124.4

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEEE----CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|||||||++++..+.+. ...||.+........    ..+.+.+|||+|++++...+..++..+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999987765 456777766544332    4578999999999999988888999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      |++++++++.+..|+..+....  .++|+++|+||+|+.+.....+..+     ..+...++++++||++|.|++++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~~~f~~  153 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT-----FHRKKNLQYYEISAKSNYNFEKPFLW  153 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH-----HHHHcCCEEEEEeCCCCCChHHHHHH
Confidence            9999999999988877776543  2799999999999874432222211     11234567999999999999999999


Q ss_pred             HHHHhhh
Q 030192          173 LSNNIAS  179 (181)
Q Consensus       173 i~~~~~~  179 (181)
                      +.+.+.+
T Consensus       154 l~~~~~~  160 (166)
T cd00877         154 LARKLLG  160 (166)
T ss_pred             HHHHHHh
Confidence            9988764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.98  E-value=1.1e-31  Score=191.55  Aligned_cols=162  Identities=18%  Similarity=0.213  Sum_probs=123.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      ..+||+++|++|+|||||+++|.++.+. .+.||.+..+.   .+....+.+.+|||+|+++|..+...+++++|++++|
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV   91 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC   91 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence            5689999999999999999999998876 45677765543   2233568899999999999999999999999999999


Q ss_pred             EECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcccCcce-EEEEccc
Q 030192           92 VDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTCA  160 (181)
Q Consensus        92 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S~  160 (181)
                      ||+++++++... ..|+..+... . ++.|+++|+||+|+.+...         ...+.......+++..+. .|++|||
T Consensus        92 yDit~~~Sf~~~~~~w~~~i~~~-~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA  169 (232)
T cd04174          92 FDISRPETVDSALKKWKAEIMDY-C-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA  169 (232)
T ss_pred             EECCChHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence            999999999885 5665555432 2 4789999999999864200         011111122233334455 6899999


Q ss_pred             cCCC-ChHHHHHHHHHHhhh
Q 030192          161 TSGE-GLYEGLDWLSNNIAS  179 (181)
Q Consensus       161 ~~~~-gv~~~~~~i~~~~~~  179 (181)
                      ++|. ||+++|..++..+.+
T Consensus       170 ktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         170 FTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             CcCCcCHHHHHHHHHHHHHH
Confidence            9998 899999999887654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.98  E-value=4.7e-31  Score=185.93  Aligned_cols=157  Identities=22%  Similarity=0.338  Sum_probs=123.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEE---ECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~---~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +||+++|++|+|||||+++|.++.+.. +.||.+..+.  .+.   ...+.+.+|||||++++...+..+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999988764 4677775542  333   3467899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcccCcc-eEEEEccccCCCC
Q 030192           92 VDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEG  165 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~g  165 (181)
                      ||++++++++.+..|+..+...   ....++|+++|+||+|+.+  ....+++.+...     ..+ ..++++||++|.|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sak~~~~  155 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCK-----ENGFIGWFETSAKEGIN  155 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCceEEEEeCCCCCC
Confidence            9999999999998887665432   1235789999999999973  223333322221     112 3689999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030192          166 LYEGLDWLSNNIAS  179 (181)
Q Consensus       166 v~~~~~~i~~~~~~  179 (181)
                      ++++|+++.+.+.+
T Consensus       156 v~e~f~~l~~~l~~  169 (201)
T cd04107         156 IEEAMRFLVKNILA  169 (201)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988765

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.98  E-value=1.9e-31  Score=189.40  Aligned_cols=162  Identities=15%  Similarity=0.219  Sum_probs=124.9

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE-E--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      ++||+++|++|+|||||+++|.++.+. .+.||.+..+. .  +....+.+.+|||+|++.|..+++.+++.+|++++||
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            379999999999999999999998877 45777775553 2  3335678999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhH--------HHhhhCCCcccCcc-eEEEEccccC
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAE--------ITDKLGLHSLRQRH-WYIQSTCATS  162 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~--------~~~~~~~~~~~~~~-~~~~~~S~~~  162 (181)
                      |++++++++.+..+|...+.... ++.|+++|+||+|+.+... ..+        +....+...++..+ .+|+||||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            99999999999777766554433 6799999999999965311 111        11111222223344 3899999999


Q ss_pred             CCC-hHHHHHHHHHHhhh
Q 030192          163 GEG-LYEGLDWLSNNIAS  179 (181)
Q Consensus       163 ~~g-v~~~~~~i~~~~~~  179 (181)
                      +.| |+++|..+..+...
T Consensus       160 ~~~~V~~~F~~~~~~~~~  177 (222)
T cd04173         160 SERSVRDVFHVATVASLG  177 (222)
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            885 99999999987654

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04175 Rap1 Rap1 subgroup

Probab=99.98  E-value=7e-32  Score=184.37  Aligned_cols=156  Identities=21%  Similarity=0.296  Sum_probs=123.9

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      +||+++|++|+|||||++++..+.+.. ..||.+..+. .+..  ..+.+++|||||++++...+..+++.+|++++|||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYS   81 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEE
Confidence            689999999999999999999887754 3566554332 2333  45678899999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      ++++.+++...+|+..+.......+.|+++++||+|+.+....  ++... +    .+..+++++++||++|.|++++|.
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~~~~  156 (164)
T cd04175          82 ITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-L----ARQWGCAFLETSAKAKINVNEIFY  156 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH-H----HHHhCCEEEEeeCCCCCCHHHHHH
Confidence            9999999999999888877655568999999999999754321  11111 1    122335799999999999999999


Q ss_pred             HHHHHhh
Q 030192          172 WLSNNIA  178 (181)
Q Consensus       172 ~i~~~~~  178 (181)
                      ++.+.+.
T Consensus       157 ~l~~~l~  163 (164)
T cd04175         157 DLVRQIN  163 (164)
T ss_pred             HHHHHhh
Confidence            9998764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.98  E-value=6.5e-31  Score=179.98  Aligned_cols=157  Identities=38%  Similarity=0.731  Sum_probs=129.5

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCc-------ccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +|+++|++|+|||||++++.+...       ....||.+.....+...+..+.+||+||+.++...+..+++.+|++++|
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v   80 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV   80 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            589999999999999999976432       1335677777777888899999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--ccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--LRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +|+++++++.....++..+.......++|+++++||+|+.+....+++...+....  ....+++++++||++|.|++++
T Consensus        81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  160 (167)
T cd04160          81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG  160 (167)
T ss_pred             EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence            99998888888888888887765556899999999999977655555555544322  2335678999999999999999


Q ss_pred             HHHHHH
Q 030192          170 LDWLSN  175 (181)
Q Consensus       170 ~~~i~~  175 (181)
                      +++|.+
T Consensus       161 ~~~l~~  166 (167)
T cd04160         161 IEWLVE  166 (167)
T ss_pred             HHHHhc
Confidence            999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.98  E-value=3.8e-31  Score=181.04  Aligned_cols=157  Identities=25%  Similarity=0.409  Sum_probs=123.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|+|||||++++.+..+. .+.|+.+..+.  .+.  ...+.+++|||||++++...+..+++.+|++++||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999998876 44677765542  233  34678999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCC----CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           93 DSNDRDRVVEARDELHRMLNEDE----LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~----~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      |+++++++.....|+..+.....    ..++|+++|+||+|+.+..  ..++....     .+..+.+++++||++|.|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi  155 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLW-----AESKGFKYFETSACTGEGV  155 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHH-----HHHcCCeEEEEECCCCCCH
Confidence            99999999988888777765433    2469999999999987422  22222211     1122357899999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030192          167 YEGLDWLSNNIAS  179 (181)
Q Consensus       167 ~~~~~~i~~~~~~  179 (181)
                      +++|+++.+.+.+
T Consensus       156 ~~l~~~l~~~l~~  168 (168)
T cd04119         156 NEMFQTLFSSIVD  168 (168)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999988753

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04128 Spg1 Spg1p

Probab=99.98  E-value=4.2e-31  Score=183.27  Aligned_cols=159  Identities=18%  Similarity=0.284  Sum_probs=123.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|+|||||+++|.++.+.. +.||.+..+.  .+..  ..+.+.+||++|++++...+..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            589999999999999999999988874 5788876653  3443  3478999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      |+++++++..+..|+..+..... ...| ++|+||+|+.+...   .+.+. .......+..+++++++||++|.|++++
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l  157 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI  157 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999888877755422 3567 67899999863211   11111 1111122334467899999999999999


Q ss_pred             HHHHHHHhhh
Q 030192          170 LDWLSNNIAS  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |+++.+.+.+
T Consensus       158 f~~l~~~l~~  167 (182)
T cd04128         158 FKIVLAKAFD  167 (182)
T ss_pred             HHHHHHHHHh
Confidence            9999987754

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04134 Rho3 Rho3 subfamily

Probab=99.97  E-value=1.1e-31  Score=187.36  Aligned_cols=161  Identities=20%  Similarity=0.263  Sum_probs=120.9

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-E--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      .||+++|++|+|||||+++|.++.+.. +.||.+..+. .  +.+..+.+++||++|++++...+..+++.+|++++|||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            489999999999999999999988864 4566655443 2  22345789999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---------hhCCCcccCc-ceEEEEccccCC
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD---------KLGLHSLRQR-HWYIQSTCATSG  163 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~S~~~~  163 (181)
                      ++++++++.....|...+... ..+.|+++|+||+|+.+.....+...         ......++.. .++++++||++|
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            999999988875444443332 25799999999999976433222111         1111112222 257999999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030192          164 EGLYEGLDWLSNNIAS  179 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~~  179 (181)
                      .|++++|.++.+.+..
T Consensus       160 ~~v~e~f~~l~~~~~~  175 (189)
T cd04134         160 RGVNEAFTEAARVALN  175 (189)
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999987653

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.97  E-value=4e-31  Score=179.93  Aligned_cols=155  Identities=19%  Similarity=0.283  Sum_probs=121.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      +||+++|++|+|||||++++.++.+.. ..|+.+..+. .+..  ..+.+.+||++|++++..++..+++.+|++++|||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~   81 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA   81 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999999888753 4555554332 2222  34678899999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      ++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++.....     +..+++++++||++|.|++++|++
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~  156 (162)
T cd04138          82 INSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFYT  156 (162)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHHH
Confidence            99999999988888887765544679999999999987532 222222211     122447899999999999999999


Q ss_pred             HHHHh
Q 030192          173 LSNNI  177 (181)
Q Consensus       173 i~~~~  177 (181)
                      +.+.+
T Consensus       157 l~~~~  161 (162)
T cd04138         157 LVREI  161 (162)
T ss_pred             HHHHh
Confidence            98764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.97  E-value=4.2e-31  Score=182.13  Aligned_cols=158  Identities=19%  Similarity=0.253  Sum_probs=117.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      +||+++|++|+|||||+.++..+.+. .+.|+.+..+.   .+....+++.+|||+|++++...+..+++++|++|+|||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS   81 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence            68999999999999999999998875 44666653322   233345789999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhh--------CCCcccCcc-eEEEEccccCC
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKL--------GLHSLRQRH-WYIQSTCATSG  163 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~-~~~~~~S~~~~  163 (181)
                      +++++++......|...+.... .+.|+++|+||+|+.+.. ..+.+....        .....+..+ .++++|||++|
T Consensus        82 ~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  160 (174)
T cd01871          82 LVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ  160 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence            9999999998764444444332 579999999999996432 111111110        001112223 37899999999


Q ss_pred             CChHHHHHHHHHH
Q 030192          164 EGLYEGLDWLSNN  176 (181)
Q Consensus       164 ~gv~~~~~~i~~~  176 (181)
                      .|++++|+.+.+.
T Consensus       161 ~~i~~~f~~l~~~  173 (174)
T cd01871         161 KGLKTVFDEAIRA  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01865 Rab3 Rab3 subfamily

Probab=99.97  E-value=2.4e-31  Score=181.94  Aligned_cols=157  Identities=19%  Similarity=0.371  Sum_probs=123.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|+|||||++++.+..+.. +.|+.+..+.  .+..  ..+.+.+||++|++++...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            689999999999999999999998763 4667665442  3322  3478999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |++++++++.+..|+..+... ...++|+++|+||+|+.+...  .++..+.     .+..+++++++||++|.|++++|
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~~l~  155 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQL-----ADQLGFEFFEASAKENINVKQVF  155 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHH
Confidence            999999999998887766443 234789999999999975432  2222211     11233478999999999999999


Q ss_pred             HHHHHHhhhc
Q 030192          171 DWLSNNIASK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      +++.+.+.+|
T Consensus       156 ~~l~~~~~~~  165 (165)
T cd01865         156 ERLVDIICDK  165 (165)
T ss_pred             HHHHHHHHhC
Confidence            9999887654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.97  E-value=3.4e-31  Score=181.99  Aligned_cols=157  Identities=24%  Similarity=0.327  Sum_probs=123.2

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      ||+++|++|||||||++++.++.+. .+.||.+..+.  .+.  +..+.+++|||||++++...+..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            7999999999999999999999886 45677776553  232  235789999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      +++++++.....|+..+.......+.|+++|+||.|+.+....   ++....+    .++.+.+++++||++|.|++++|
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~v~~lf  157 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL----AAEMQAEYWSVSALSGENVREFF  157 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH----HHHcCCeEEEEECCCCCCHHHHH
Confidence            9999999999888877766543345789999999998653221   1111111    12223468899999999999999


Q ss_pred             HHHHHHhhh
Q 030192          171 DWLSNNIAS  179 (181)
Q Consensus       171 ~~i~~~~~~  179 (181)
                      +.+.+.+.+
T Consensus       158 ~~l~~~~~~  166 (170)
T cd04108         158 FRVAALTFE  166 (170)
T ss_pred             HHHHHHHHH
Confidence            999987754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.97  E-value=3.5e-31  Score=181.49  Aligned_cols=159  Identities=23%  Similarity=0.384  Sum_probs=126.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ..+||+++|++|+|||||++++.+..+.. +.|+.+..+.  .+..  ..+.+.+||+||++++...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            35899999999999999999999988764 4666665442  3333  34689999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |||+++++++..+.+|+..+... ...+.|+++++||+|+.+..  ..++.....     +..+.+++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~  155 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE  155 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence            99999999999998877776553 23578999999999997532  222222221     22345789999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030192          169 GLDWLSNNIASK  180 (181)
Q Consensus       169 ~~~~i~~~~~~~  180 (181)
                      +|.++.+.+..+
T Consensus       156 ~~~~i~~~~~~~  167 (167)
T cd01867         156 AFFTLAKDIKKK  167 (167)
T ss_pred             HHHHHHHHHHhC
Confidence            999999988754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.6e-31  Score=181.37  Aligned_cols=161  Identities=20%  Similarity=0.381  Sum_probs=132.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE----EEECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +..+||+++|++|+|||-|+.||..+.|. ...+|+|+.+.+    +++..++.+||||+|+++|+.....|++.+.+.+
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl   91 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   91 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence            46689999999999999999999999987 557888888754    4457789999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +|||+++..+|+++..|+.++..+.. .++++++|+||+||.+....   ...-...+++..+..++++||..+.|++++
T Consensus        92 lVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV---~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a  167 (222)
T KOG0087|consen   92 LVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAV---PTEDGKAFAEKEGLFFLETSALDATNVEKA  167 (222)
T ss_pred             EEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhcccc---chhhhHhHHHhcCceEEEecccccccHHHH
Confidence            99999999999988888888777655 68999999999999763211   111112222333446889999999999999


Q ss_pred             HHHHHHHhhh
Q 030192          170 LDWLSNNIAS  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |..++..+.+
T Consensus       168 F~~~l~~I~~  177 (222)
T KOG0087|consen  168 FERVLTEIYK  177 (222)
T ss_pred             HHHHHHHHHH
Confidence            9999887765

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.97  E-value=2.9e-31  Score=181.16  Aligned_cols=156  Identities=19%  Similarity=0.262  Sum_probs=122.4

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-E--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      .+||+++|++|+|||||++++.++.+.. ..++.+..+. .  +.+..+.+++|||||++++...+..+++.+|++++||
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            4799999999999999999999887653 3455443222 2  3334468999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |++++.++.....|+..+.......+.|+++++||+|+.+...  .++..+.     .+..+++++++||++|.|++++|
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~l~  156 (164)
T cd04145          82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL-----ARKLKIPYIETSAKDRLNVDKAF  156 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH-----HHHcCCcEEEeeCCCCCCHHHHH
Confidence            9999999999999888877655446799999999999875432  1222111     12234578999999999999999


Q ss_pred             HHHHHHh
Q 030192          171 DWLSNNI  177 (181)
Q Consensus       171 ~~i~~~~  177 (181)
                      +++.+.+
T Consensus       157 ~~l~~~~  163 (164)
T cd04145         157 HDLVRVI  163 (164)
T ss_pred             HHHHHhh
Confidence            9998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04117 Rab15 Rab15 subfamily

Probab=99.97  E-value=7.4e-31  Score=178.85  Aligned_cols=154  Identities=21%  Similarity=0.380  Sum_probs=121.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      ++|+++|++|+|||||++++.++.+.. +.||.+..+.  .+...  .+.+.+||++|++++...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            589999999999999999999988764 4677775543  33333  468899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      |++++++++.+..|+..+.... ..+.|+++|+||.|+.+.... .+....+    .+..+.+++++||++|.|++++|.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~  155 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKL----AKEYGMDFFETSACTNSNIKESFT  155 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHH----HHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999988887665432 246999999999998654321 1111111    122234789999999999999999


Q ss_pred             HHHHH
Q 030192          172 WLSNN  176 (181)
Q Consensus       172 ~i~~~  176 (181)
                      ++.+.
T Consensus       156 ~l~~~  160 (161)
T cd04117         156 RLTEL  160 (161)
T ss_pred             HHHhh
Confidence            99875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04144 Ras2 Ras2 subfamily

Probab=99.97  E-value=2.2e-31  Score=186.06  Aligned_cols=158  Identities=18%  Similarity=0.237  Sum_probs=121.1

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-E--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   94 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (181)
                      +|+++|.+|+|||||+++|..+.+.. ..||.+..+. .  +.+..+.+.+|||||++++...+..+++.+|++++|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            58999999999999999999888764 4556553332 2  223346799999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192           95 NDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      ++++++..+..|+..+.....  ..+.|+++|+||+|+.+........   .....+..+++++++||++|.|++++|.+
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~---~~~~~~~~~~~~~e~SAk~~~~v~~l~~~  157 (190)
T cd04144          81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEE---GAALARRLGCEFIEASAKTNVNVERAFYT  157 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHH---HHHHHHHhCCEEEEecCCCCCCHHHHHHH
Confidence            999999999888877654322  2578999999999986532211110   01112223457999999999999999999


Q ss_pred             HHHHhhh
Q 030192          173 LSNNIAS  179 (181)
Q Consensus       173 i~~~~~~  179 (181)
                      +.+.+.+
T Consensus       158 l~~~l~~  164 (190)
T cd04144         158 LVRALRQ  164 (190)
T ss_pred             HHHHHHH
Confidence            9988764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=99.97  E-value=3.8e-31  Score=180.50  Aligned_cols=157  Identities=17%  Similarity=0.282  Sum_probs=121.2

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccc-eeEEEEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      .++|+++|++|+|||||++++..+.+... .||.+ .....+.  +..+.+++|||||++++...+..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            37899999999999999999999887643 45543 1122333  34567889999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      |+++++++.+...|+..+.......++|+++|+||+|+.+..... +....+    .+..+.+++++||++|.|++++|.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~l~~  156 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRAL----AEEWGCPFMETSAKSKTMVNELFA  156 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHH----HHHhCCEEEEecCCCCCCHHHHHH
Confidence            999999999998888777765444679999999999986532211 111111    112235789999999999999999


Q ss_pred             HHHHHh
Q 030192          172 WLSNNI  177 (181)
Q Consensus       172 ~i~~~~  177 (181)
                      ++.+.+
T Consensus       157 ~l~~~l  162 (163)
T cd04176         157 EIVRQM  162 (163)
T ss_pred             HHHHhc
Confidence            998764

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.97  E-value=3.6e-30  Score=174.34  Aligned_cols=157  Identities=36%  Similarity=0.680  Sum_probs=133.6

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   97 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (181)
                      .|+++|++|+|||||++++.+..+. .+.|+.+.....+....+.+.+||+||+..+...+..+++.+|++++|+|++++
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~   80 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR   80 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH
Confidence            3799999999999999999998876 457888887777777789999999999999999999999999999999999998


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192           98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                      +++.....++..........++|+++|+||+|+.+....+++...+.........++++++|+++|.|++++++++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159          81 TALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            888888888888877655567999999999998776555566666655555556678999999999999999999865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04111 Rab39 Rab39 subfamily

Probab=99.97  E-value=3.9e-31  Score=187.40  Aligned_cols=158  Identities=23%  Similarity=0.453  Sum_probs=126.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE---CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      .+||+++|++|+|||||++++.+..+.. ..||.+..+.  .+..   ..+.+++||++|++++...+..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            4899999999999999999999988764 3567665543  2322   35789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |||+++++++..+..|+..+........+|+++|+||+|+.+...  .++..+     ..+..+++++++||++|.|+++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~Sak~g~~v~e  156 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEK-----LAKDLGMKYIETSARTGDNVEE  156 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHH-----HHHHhCCEEEEEeCCCCCCHHH
Confidence            999999999999999888877654445688999999999875322  112111     1122346799999999999999


Q ss_pred             HHHHHHHHhhh
Q 030192          169 GLDWLSNNIAS  179 (181)
Q Consensus       169 ~~~~i~~~~~~  179 (181)
                      +|+++.+.+.+
T Consensus       157 ~f~~l~~~~~~  167 (211)
T cd04111         157 AFELLTQEIYE  167 (211)
T ss_pred             HHHHHHHHHHH
Confidence            99999987764

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.97  E-value=4.4e-31  Score=180.32  Aligned_cols=157  Identities=20%  Similarity=0.303  Sum_probs=122.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE-EE--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      +||+++|++|||||||++++.+..+... .++.+..+ ..  +....+.+.+|||||++++...+..+++.+|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            4899999999999999999998877643 44444222 12  22345789999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      +++++++.....|+..+.......++|+++++||+|+.+..  ..++.....     +..+.+++++||++|.|++++|+
T Consensus        81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~  155 (164)
T smart00173       81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence            99999999998888777665554579999999999987532  222222111     12235799999999999999999


Q ss_pred             HHHHHhhh
Q 030192          172 WLSNNIAS  179 (181)
Q Consensus       172 ~i~~~~~~  179 (181)
                      ++.+.+.+
T Consensus       156 ~l~~~~~~  163 (164)
T smart00173      156 DLVREIRK  163 (164)
T ss_pred             HHHHHHhh
Confidence            99987653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04109 Rab28 Rab28 subfamily

Probab=99.97  E-value=6.9e-31  Score=186.82  Aligned_cols=157  Identities=18%  Similarity=0.262  Sum_probs=123.2

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE---CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +||+++|++|+|||||+++|.++.+.. +.||.+..+.  .+..   ..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            589999999999999999999988764 4677776543  3333   357999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      ||+++++++..+..|+..+.....  ..++|+++|+||+|+.+...  .++...     ..+..+++++++||++|.|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~-----~~~~~~~~~~~iSAktg~gv~  155 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHAR-----FAQANGMESCLVSAKTGDRVN  155 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHH-----HHHHcCCEEEEEECCCCCCHH
Confidence            999999999999887776655432  24578999999999975321  111111     112233568899999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|+++...+..
T Consensus       156 ~lf~~l~~~l~~  167 (215)
T cd04109         156 LLFQQLAAELLG  167 (215)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.9e-31  Score=171.06  Aligned_cols=161  Identities=20%  Similarity=0.386  Sum_probs=127.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--E-EE-CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--V-EY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~-~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      -.+|++++|...+|||||+.++....|.. ...|.|+.+..  + .. ..+++++|||+|+++++.+...++++++++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            34699999999999999999999998864 46788876532  2 22 45799999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      +||+++.+|+.....|. .+++...+.+.|+|+++||||+.++...   ..+.+...+++.|..+||+|||.+.||+.+|
T Consensus       100 myDitNeeSf~svqdw~-tqIktysw~naqvilvgnKCDmd~eRvi---s~e~g~~l~~~LGfefFEtSaK~NinVk~~F  175 (193)
T KOG0093|consen  100 MYDITNEESFNSVQDWI-TQIKTYSWDNAQVILVGNKCDMDSERVI---SHERGRQLADQLGFEFFETSAKENINVKQVF  175 (193)
T ss_pred             EEecCCHHHHHHHHHHH-HHheeeeccCceEEEEecccCCccceee---eHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence            99999999997766655 5556667789999999999999765321   1111222233344468899999999999999


Q ss_pred             HHHHHHhhhc
Q 030192          171 DWLSNNIASK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      +.+++.+.++
T Consensus       176 e~lv~~Ic~k  185 (193)
T KOG0093|consen  176 ERLVDIICDK  185 (193)
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.97  E-value=1.4e-30  Score=166.93  Aligned_cols=173  Identities=32%  Similarity=0.649  Sum_probs=159.4

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccc
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ   83 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   83 (181)
                      +.++.+.++ ...+.+.++|..+||||||+|....+.+.++ .||.|++...+....+.+.+||.||+.+++..|..|++
T Consensus         9 L~wi~~~f~-k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR   87 (186)
T KOG0075|consen    9 LVWICNSFW-KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR   87 (186)
T ss_pred             HHHHHHHHH-HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhh
Confidence            444544455 5669999999999999999999988877755 89999999999999999999999999999999999999


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192           84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  163 (181)
                      .+++++||+|+++++.++.....+.+++..+.+.++|+++++||.|+..+....++...+++..++...+.+|.+|+++.
T Consensus        88 ~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~  167 (186)
T KOG0075|consen   88 GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEK  167 (186)
T ss_pred             cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCC
Confidence            99999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhh
Q 030192          164 EGLYEGLDWLSNNIA  178 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~  178 (181)
                      .|++-+..|+.+.-.
T Consensus       168 ~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  168 VNIDITLDWLIEHSK  182 (186)
T ss_pred             ccHHHHHHHHHHHhh
Confidence            999999999988643

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.97  E-value=5.6e-31  Score=180.24  Aligned_cols=157  Identities=22%  Similarity=0.381  Sum_probs=123.5

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+||+++|++|+|||||++++.++.+.. ..++.+..+  ..+..  ..+.+++||+||++++...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            3799999999999999999999887763 356655443  23333  346899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      ||+++++++..+..|+..+.... ..+.|+++++||+|+.+...  .++.....     +..+++++++||++|.|++++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~  155 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFA-----DELGIPFLETSAKNATNVEQA  155 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCcCHHHH
Confidence            99999999999999887765432 25689999999999865432  22222211     123457999999999999999


Q ss_pred             HHHHHHHhhh
Q 030192          170 LDWLSNNIAS  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |..+.+.+.+
T Consensus       156 ~~~i~~~~~~  165 (166)
T cd01869         156 FMTMAREIKK  165 (166)
T ss_pred             HHHHHHHHHh
Confidence            9999988764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.8e-31  Score=170.03  Aligned_cols=161  Identities=22%  Similarity=0.336  Sum_probs=132.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE----EEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      --+|++++|+.|+|||+|+.+|...++... ..|+|+.+.    .+.++.+++++|||+|+++|+.....|++.+.+.++
T Consensus         8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL   87 (214)
T KOG0086|consen    8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL   87 (214)
T ss_pred             hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence            347999999999999999999999998754 668887763    344467899999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |||+++.++|+.+..|+.+...... +++-+++++||.|+.+..++.   -.....+.+.....+.++|+++|+||++.|
T Consensus        88 VYD~TsrdsfnaLtnWL~DaR~lAs-~nIvviL~GnKkDL~~~R~Vt---flEAs~FaqEnel~flETSa~TGeNVEEaF  163 (214)
T KOG0086|consen   88 VYDITSRDSFNALTNWLTDARTLAS-PNIVVILCGNKKDLDPEREVT---FLEASRFAQENELMFLETSALTGENVEEAF  163 (214)
T ss_pred             EEeccchhhHHHHHHHHHHHHhhCC-CcEEEEEeCChhhcChhhhhh---HHHHHhhhcccceeeeeecccccccHHHHH
Confidence            9999999999999999988766543 678899999999997653322   112223344455568899999999999999


Q ss_pred             HHHHHHhhhc
Q 030192          171 DWLSNNIASK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      -...+.+..|
T Consensus       164 l~c~~tIl~k  173 (214)
T KOG0086|consen  164 LKCARTILNK  173 (214)
T ss_pred             HHHHHHHHHH
Confidence            9988887654

>cd01864 Rab19 Rab19 subfamily

Probab=99.97  E-value=4.3e-30  Score=175.71  Aligned_cols=154  Identities=22%  Similarity=0.418  Sum_probs=120.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCcccee--EEEEEECC--EEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ..+||+++|++|+|||||++++..+.+.. ..++.+..  ...+...+  +.+++||+||++++...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999887764 34555433  33444444  689999999999999989999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHh---HHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAA---EITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      |||++++++++.+..|+..+.... ..++|+++|+||+|+.+..  ..+   ++.+....       ..++++||++|.|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~e~Sa~~~~~  153 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGM-------LAVLETSAKESQN  153 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-------cEEEEEECCCCCC
Confidence            999999999998888877765532 3579999999999987542  112   22222221       3688999999999


Q ss_pred             hHHHHHHHHHHh
Q 030192          166 LYEGLDWLSNNI  177 (181)
Q Consensus       166 v~~~~~~i~~~~  177 (181)
                      ++++|+++.+.+
T Consensus       154 v~~~~~~l~~~l  165 (165)
T cd01864         154 VEEAFLLMATEL  165 (165)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998753

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.97  E-value=4.1e-30  Score=179.19  Aligned_cols=156  Identities=19%  Similarity=0.244  Sum_probs=118.9

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEE---ECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~---~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|+|||||++++.++.+.. +.|+.+..+. .+.   ...+++.+|||||++++...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            589999999999999999999988763 4566554432 232   23578999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC------CHhHHHhhhCCCcccCcce-EEEEccccCCCC
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------NAAEITDKLGLHSLRQRHW-YIQSTCATSGEG  165 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~g  165 (181)
                      |++++++++.....|...+... ..+.|+++|+||+|+.+..      ..++..+     ..+..+. +++++||++|.|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~e~Sa~~~~~  154 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAES-----VAKKQGAFAYLECSAKTMEN  154 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHH-----HHHHcCCcEEEEccCCCCCC
Confidence            9999999998876444333322 2578999999999986532      1111111     1112223 689999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030192          166 LYEGLDWLSNNIAS  179 (181)
Q Consensus       166 v~~~~~~i~~~~~~  179 (181)
                      ++++|..+.+.+..
T Consensus       155 v~~~f~~l~~~~~~  168 (187)
T cd04132         155 VEEVFDTAIEEALK  168 (187)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987764

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=1.9e-30  Score=176.15  Aligned_cols=154  Identities=16%  Similarity=0.233  Sum_probs=112.9

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   94 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (181)
                      +||+++|++|+|||||+.++..+.+... .|+.+.....+..+  .+.+.+||++|++.     ..+++.+|++++|||+
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~   75 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL   75 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence            4899999999999999999998877644 34333222334444  47799999999975     2456789999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccC-cceEEEEccccCCCChHHHHHHH
Q 030192           95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYIQSTCATSGEGLYEGLDWL  173 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~gv~~~~~~i  173 (181)
                      +++++++++..|+..+.......++|+++|+||+|+.... .+++.........++ ..+.+++|||++|.||+++|..+
T Consensus        76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~  154 (158)
T cd04103          76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA  154 (158)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence            9999999999988888766544678999999999984310 011111111111212 24679999999999999999999


Q ss_pred             HHHh
Q 030192          174 SNNI  177 (181)
Q Consensus       174 ~~~~  177 (181)
                      .+.+
T Consensus       155 ~~~~  158 (158)
T cd04103         155 AQKI  158 (158)
T ss_pred             HhhC
Confidence            8653

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04125 RabA_like RabA-like subfamily

Probab=99.97  E-value=1.6e-30  Score=181.41  Aligned_cols=158  Identities=23%  Similarity=0.376  Sum_probs=123.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|+|||||++++.++.+.. +.|+.+..+.  .+..  ..+.+.+||++|++++...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            589999999999999999999998864 5677665432  3333  4578899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      |+++++++..+..|+..+.... ..++|+++++||+|+.+..... +....+    .+..+++++++||++|.|++++|.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~evSa~~~~~i~~~f~  155 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSF----CDSLNIPFFETSAKQSINVEEAFI  155 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHH----HHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999998777665432 2468999999999987543211 111111    112344789999999999999999


Q ss_pred             HHHHHhhhc
Q 030192          172 WLSNNIASK  180 (181)
Q Consensus       172 ~i~~~~~~~  180 (181)
                      ++.+.+.++
T Consensus       156 ~l~~~~~~~  164 (188)
T cd04125         156 LLVKLIIKR  164 (188)
T ss_pred             HHHHHHHHH
Confidence            999987653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=99.97  E-value=1.9e-30  Score=177.49  Aligned_cols=156  Identities=15%  Similarity=0.233  Sum_probs=118.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE---EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      ++|+++|++|+|||||++++.++.+. .+.|+.+..+..   .....+.+.+|||||++++...+..+++.+|++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            68999999999999999999998875 345655543322   22345789999999999999988888999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           94 SNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      +++++++.....|+..+...  ....++|+++|+||+|+.+........   ........+..++++||++|.|++++|+
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---~~~~~~~~~~~~~e~SA~~g~~v~~~f~  158 (165)
T cd04140          82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNE---GAACATEWNCAFMETSAKTNHNVQELFQ  158 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHH---HHHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence            99999999988887655332  122579999999999996532221110   0111122345789999999999999999


Q ss_pred             HHHHH
Q 030192          172 WLSNN  176 (181)
Q Consensus       172 ~i~~~  176 (181)
                      ++...
T Consensus       159 ~l~~~  163 (165)
T cd04140         159 ELLNL  163 (165)
T ss_pred             HHHhc
Confidence            98753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04110 Rab35 Rab35 subfamily

Probab=99.97  E-value=2.2e-30  Score=182.24  Aligned_cols=157  Identities=22%  Similarity=0.390  Sum_probs=124.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ..++|+++|++|+|||||+++|.+..+. .+.||.+..+  ..+..  ..+.+.+||+||++.+...+..+++++|++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            4689999999999999999999998876 4567776544  33333  34689999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |||++++++++.+..|+..+....  ...|+++|+||+|+.+....  ++..+..     ++.+++++++|+++|.|+++
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~~  157 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVEE  157 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHHH
Confidence            999999999999988887765432  46899999999998764321  2222111     12345799999999999999


Q ss_pred             HHHHHHHHhhh
Q 030192          169 GLDWLSNNIAS  179 (181)
Q Consensus       169 ~~~~i~~~~~~  179 (181)
                      +|+++.+.+..
T Consensus       158 lf~~l~~~~~~  168 (199)
T cd04110         158 MFNCITELVLR  168 (199)
T ss_pred             HHHHHHHHHHH
Confidence            99999987754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01866 Rab2 Rab2 subfamily

Probab=99.97  E-value=2.4e-30  Score=177.46  Aligned_cols=157  Identities=19%  Similarity=0.317  Sum_probs=124.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+||+++|++|+|||||++++.+..+... .++.+....  .+..  ....+.+||+||++++......+++.+|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999998876543 455554432  2333  456899999999999999888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +|++++.++..+..|+..+.... .+++|+++|+||.|+.+..  ..++.....     +..+++++++||+++.|++++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~  157 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEEA  157 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999998887775543 2679999999999987432  222332221     223457999999999999999


Q ss_pred             HHHHHHHhhh
Q 030192          170 LDWLSNNIAS  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |.++.+.+.+
T Consensus       158 ~~~~~~~~~~  167 (168)
T cd01866         158 FINTAKEIYE  167 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999988765

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04116 Rab9 Rab9 subfamily

Probab=99.97  E-value=1e-29  Score=174.64  Aligned_cols=159  Identities=14%  Similarity=0.304  Sum_probs=123.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--E--EEECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ...+||+++|++|+|||||++++.++.+.. ..++.+..+.  .  +....+.+++||+||++++...+..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            456899999999999999999999888764 4566665532  2  3335578899999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCC---CCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      +|||+++++++.....|...+.....   ..+.|+++++||+|+.... ..++..+.....    ...+++++||++|.|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~e~Sa~~~~~  158 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN----GDYPYFETSAKDATN  158 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC----CCCeEEEEECCCCCC
Confidence            99999999999998888876655322   2468999999999986432 233333222111    123689999999999


Q ss_pred             hHHHHHHHHHHh
Q 030192          166 LYEGLDWLSNNI  177 (181)
Q Consensus       166 v~~~~~~i~~~~  177 (181)
                      ++++|..+++.+
T Consensus       159 v~~~~~~~~~~~  170 (170)
T cd04116         159 VAAAFEEAVRRV  170 (170)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04112 Rab26 Rab26 subfamily

Probab=99.97  E-value=2e-30  Score=181.33  Aligned_cols=157  Identities=18%  Similarity=0.402  Sum_probs=122.4

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc--cccCccceeEEE--EEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +||+++|++|||||||++++..+.+.  ...++.+..+..  +..  ..+.+++|||||++++...+..+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999988875  345666554432  333  457899999999999998888899999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +|+++++++.++..|+..+... ...++|+++++||+|+....  ..++.....     +..+.+++++||++|.|++++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~~~e~Sa~~~~~v~~l  154 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVPFMETSAKTGLNVELA  154 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence            9999999999888877666543 22478999999999986432  222222211     223457999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030192          170 LDWLSNNIASK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |.++.+.+.++
T Consensus       155 ~~~l~~~~~~~  165 (191)
T cd04112         155 FTAVAKELKHR  165 (191)
T ss_pred             HHHHHHHHHHh
Confidence            99999887654

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01868 Rab11_like Rab11-like

Probab=99.97  E-value=3.7e-30  Score=175.97  Aligned_cols=155  Identities=21%  Similarity=0.381  Sum_probs=122.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .++|+++|++|||||||++++.+..+. ...|+.+..+.  .+...  .+.+.+||+||++++...+..+++.++++++|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            479999999999999999999988876 44677665443  33333  36899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      ||+++++++..+..|+..+.... ..++|+++|+||+|+.+..  ..++.....     +..+++++++||++|.|++++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l  156 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEEA  156 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence            99999999999888877665543 2468999999999987532  222222221     123457899999999999999


Q ss_pred             HHHHHHHh
Q 030192          170 LDWLSNNI  177 (181)
Q Consensus       170 ~~~i~~~~  177 (181)
                      |+++...+
T Consensus       157 ~~~l~~~i  164 (165)
T cd01868         157 FKQLLTEI  164 (165)
T ss_pred             HHHHHHHh
Confidence            99998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.97  E-value=6.1e-30  Score=176.31  Aligned_cols=159  Identities=17%  Similarity=0.237  Sum_probs=116.9

Q ss_pred             EEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EE--EECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC
Q 030192           20 ILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (181)
                      |+++|++|+|||||++++.++.+.. +.|+....+. .+  ....+.+.+|||||++++...+..+++.+|++++|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            5899999999999999999988764 3455443332 22  234568999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHh--------hhCCCcccCcc-eEEEEccccCCCC
Q 030192           96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITD--------KLGLHSLRQRH-WYIQSTCATSGEG  165 (181)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~--------~~~~~~~~~~~-~~~~~~S~~~~~g  165 (181)
                      ++++++.....|...+.... .++|+++|+||+|+..... .+++..        .......+..+ ..++++||++|.|
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  159 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG  159 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            99999988764444443322 5799999999999865321 111110        00011122233 2789999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030192          166 LYEGLDWLSNNIAS  179 (181)
Q Consensus       166 v~~~~~~i~~~~~~  179 (181)
                      ++++|+.+.+.+.+
T Consensus       160 v~~lf~~l~~~~~~  173 (174)
T smart00174      160 VREVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.97  E-value=6.2e-30  Score=179.33  Aligned_cols=150  Identities=23%  Similarity=0.328  Sum_probs=121.2

Q ss_pred             EcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEE----ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192           23 VGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   97 (181)
Q Consensus        23 ~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (181)
                      +|++|||||||++++..+.+.. +.||.+..+....    ...+.+.+|||+|++++..++..+++++|++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            6999999999999999888764 5778876664332    2468999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192           98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      .++..+..|+..+....  .++|+++|+||+|+.......+..     ...+..++.+++|||++|.|++++|.++.+.+
T Consensus        81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-----~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i  153 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-----TFHRKKNLQYYDISAKSNYNFEKPFLWLARKL  153 (200)
T ss_pred             HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-----HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999988777676532  579999999999986432211111     12234567899999999999999999999877


Q ss_pred             hh
Q 030192          178 AS  179 (181)
Q Consensus       178 ~~  179 (181)
                      .+
T Consensus       154 ~~  155 (200)
T smart00176      154 IG  155 (200)
T ss_pred             Hh
Confidence            54

Ran is involved in the active transport of proteins through nuclear pores.

>cd04113 Rab4 Rab4 subfamily

Probab=99.97  E-value=3.8e-30  Score=175.23  Aligned_cols=154  Identities=21%  Similarity=0.370  Sum_probs=119.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|+|||||++++.+..+.. ..++.+..+.  .+.  ...+.+.+||+||++++...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            589999999999999999999888753 4555554432  223  33468999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |+++++++..+..|+...... ..+++|+++++||+|+.+...  .++.....     +..++.++++||+++.|++++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~  154 (161)
T cd04113          81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFA-----QENGLLFLETSALTGENVEEAF  154 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence            999999999988887765433 236799999999999865322  22222211     1223579999999999999999


Q ss_pred             HHHHHHh
Q 030192          171 DWLSNNI  177 (181)
Q Consensus       171 ~~i~~~~  177 (181)
                      +++.+.+
T Consensus       155 ~~~~~~~  161 (161)
T cd04113         155 LKCARSI  161 (161)
T ss_pred             HHHHHhC
Confidence            9998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.97  E-value=2.9e-30  Score=175.88  Aligned_cols=152  Identities=18%  Similarity=0.341  Sum_probs=119.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--EE----ECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      +||+++|++|+|||||++++.++.+.. ..|+.+..+..  +.    ...+.+++||+||++++...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999987763 45676665432  22    346789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |||+++++++.....|+..+...  ..++|+++|+||+|+.....  .++....     .+..+++++++|+++|.|+++
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~  153 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEAL-----AKRLQLPLFRTSVKDDFNVTE  153 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHH-----HHHcCCeEEEEECCCCCCHHH
Confidence            99999999999888877666432  25799999999999865432  2222211     112334789999999999999


Q ss_pred             HHHHHHHH
Q 030192          169 GLDWLSNN  176 (181)
Q Consensus       169 ~~~~i~~~  176 (181)
                      +|+++.+.
T Consensus       154 l~~~l~~~  161 (162)
T cd04106         154 LFEYLAEK  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04124 RabL2 RabL2 subfamily

Probab=99.97  E-value=1.1e-29  Score=173.06  Aligned_cols=154  Identities=17%  Similarity=0.267  Sum_probs=119.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE----EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|+|||||++++.++.+... .++.+....    .+....+.+.+|||+|++++...+..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999998887643 444443322    22334578999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      |++++.++.....|+..+...  ..++|+++++||+|+.... .++..     ...+..+++++++||++|.|++++|+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-----~~~~~~~~~~~~~Sa~~~~gv~~l~~~  152 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-----NFAEKHNLPLYYVSAADGTNVVKLFQD  152 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-----HHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999998888777666442  2468999999999985321 11111     111223457899999999999999999


Q ss_pred             HHHHhhh
Q 030192          173 LSNNIAS  179 (181)
Q Consensus       173 i~~~~~~  179 (181)
                      +.+.+.+
T Consensus       153 l~~~~~~  159 (161)
T cd04124         153 AIKLAVS  159 (161)
T ss_pred             HHHHHHh
Confidence            9987765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=3.4e-29  Score=171.93  Aligned_cols=155  Identities=19%  Similarity=0.178  Sum_probs=122.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccCccceeE--EEEE--ECCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~--~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      ++.+||+++|++|+|||||+++|.++.+.  .+.||.+..+  ..+.  +..+.+.+||++|++.+...+..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            56789999999999999999999998875  4567776543  2333  3447899999999999998889899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  163 (181)
                      ++|+|++++.++.....|+......   .++|+++|+||+|+.+..     ..+++.+.++..       .++++||++|
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~  151 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLG  151 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccC
Confidence            9999999999988887777654222   479999999999986432     223444443332       3578999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030192          164 EGLYEGLDWLSNNIAS  179 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~~  179 (181)
                      .|++++|+.+.+.+..
T Consensus       152 ~~v~~lf~~l~~~~~~  167 (169)
T cd01892         152 DSSNELFTKLATAAQY  167 (169)
T ss_pred             ccHHHHHHHHHHHhhC
Confidence            9999999999988754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04118 Rab24 Rab24 subfamily

Probab=99.97  E-value=6.9e-30  Score=178.92  Aligned_cols=156  Identities=17%  Similarity=0.297  Sum_probs=120.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc--ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +||+++|++|+|||||+++|.++.+..  +.+|.+..+.  .+..  ..+.+.+||++|++++...+..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988763  5666665442  2333  446788999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      ||++++.++.....|+..+...  ..+.|+++|+||+|+.+...      .++..+     +....+++++++||++|.|
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~g  153 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD-----FADEIKAQHFETSSKTGQN  153 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHH-----HHHHcCCeEEEEeCCCCCC
Confidence            9999999998887777665443  24789999999999864321      111111     1122345788999999999


Q ss_pred             hHHHHHHHHHHhhhc
Q 030192          166 LYEGLDWLSNNIASK  180 (181)
Q Consensus       166 v~~~~~~i~~~~~~~  180 (181)
                      ++++|+.+.+.+.++
T Consensus       154 v~~l~~~i~~~~~~~  168 (193)
T cd04118         154 VDELFQKVAEDFVSR  168 (193)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999877653

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=2.5e-30  Score=176.30  Aligned_cols=154  Identities=26%  Similarity=0.438  Sum_probs=123.7

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--EEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      ||+++|++|+|||||+++|.++.+.. +.+|.+.....  +..  ..+.+.+||++|++++......+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999988774 46676655543  333  55789999999999999988899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      +++++++..+..|+..+..... .+.|+++++||.|+.+..  ..++..+..     +..+.+++++|++++.|+.++|.
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~  154 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ  154 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred             cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence            9999999999988877765543 469999999999987622  222222111     12234799999999999999999


Q ss_pred             HHHHHhh
Q 030192          172 WLSNNIA  178 (181)
Q Consensus       172 ~i~~~~~  178 (181)
                      .+++.++
T Consensus       155 ~~i~~i~  161 (162)
T PF00071_consen  155 ELIRKIL  161 (162)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.8e-31  Score=168.37  Aligned_cols=158  Identities=21%  Similarity=0.352  Sum_probs=129.9

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE----EEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      -+||+++|..|+|||+|+++|.++-|+ ...+|+|..+    ..++++++++++|||+|+++|+.+..+|++.++++++|
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            479999999999999999999999877 4577877654    34556889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      ||++...+|.-+.+|+.++-.... .+..-|+|+||.|+.+..   ++-+..+..+....+..+.++||+...|++.+|.
T Consensus        87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drr---evp~qigeefs~~qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen   87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRR---EVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhh---hhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence            999999999999999888766544 457789999999987753   3333334444444556788999999999999999


Q ss_pred             HHHHHhh
Q 030192          172 WLSNNIA  178 (181)
Q Consensus       172 ~i~~~~~  178 (181)
                      .+.-.+.
T Consensus       163 ~~a~rli  169 (213)
T KOG0095|consen  163 DLACRLI  169 (213)
T ss_pred             HHHHHHH
Confidence            8876554

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.97  E-value=6e-30  Score=175.85  Aligned_cols=158  Identities=21%  Similarity=0.397  Sum_probs=122.6

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEE--CCEEEEEEEcCCCCCcc-cchhhccccccEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIR-PLWRHYFQNTQGLIF   90 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~   90 (181)
                      .++|+++|++|+|||||++++....+. .+.++.+..+.  .+..  ..+.+.+||++|+++++ ..+..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            579999999999999999999988876 34566654432  3333  44789999999999886 467888899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEccccC---CCCh
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATS---GEGL  166 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~---~~gv  166 (181)
                      |||+++++++.....|...+.......++|+++|+||+|+.+.... .+..+.+.    +...++++++||++   +.|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i  157 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV  157 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence            9999999999999888877766554467999999999998654321 12222121    22335789999999   9999


Q ss_pred             HHHHHHHHHHhh
Q 030192          167 YEGLDWLSNNIA  178 (181)
Q Consensus       167 ~~~~~~i~~~~~  178 (181)
                      +++|..+++.+.
T Consensus       158 ~~~f~~l~~~~~  169 (170)
T cd04115         158 EAIFMTLAHKLK  169 (170)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988763

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PLN03118 Rab family protein; Provisional

Probab=99.97  E-value=6.6e-30  Score=181.34  Aligned_cols=160  Identities=23%  Similarity=0.409  Sum_probs=125.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ...+||+++|++|+|||||+++|.+..+....|+.+..+.  .+..  ..+.+.+|||||++++...+..+++.+|++++
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl   91 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL   91 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            4578999999999999999999999887666777765442  3333  34689999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      |||+++++++..+..+|...+.. ....+.|+++|+||+|+......  ++....     .+..++.++++||++|.|++
T Consensus        92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~-----~~~~~~~~~e~SAk~~~~v~  166 (211)
T PLN03118         92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMAL-----AKEHGCLFLECSAKTRENVE  166 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence            99999999999998876655543 22346899999999998754322  222111     12234578999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|+++.+.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (211)
T PLN03118        167 QCFEELALKIME  178 (211)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.97  E-value=8.1e-30  Score=173.91  Aligned_cols=157  Identities=21%  Similarity=0.438  Sum_probs=123.4

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|||||||++++.+..+.. ..++.+..+.  .+...  .+.+.+||+||++++...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            589999999999999999999887653 3456555432  33443  368999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |++++++++.+..|+..+..... .++|+++++||+|+....  ..+.....     .++.+++++++|+++|.|+++++
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~~l~  154 (164)
T smart00175       81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAF-----AEEHGLPFFETSAKTNTNVEEAF  154 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHH-----HHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999888887766655432 579999999999987632  22222221     12234579999999999999999


Q ss_pred             HHHHHHhhhc
Q 030192          171 DWLSNNIASK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      +.+.+.+.++
T Consensus       155 ~~i~~~~~~~  164 (164)
T smart00175      155 EELAREILKR  164 (164)
T ss_pred             HHHHHHHhhC
Confidence            9999988764

Rab GTPases are implicated in vesicle trafficking.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=3.7e-31  Score=169.93  Aligned_cols=156  Identities=19%  Similarity=0.353  Sum_probs=128.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE----EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      ++.+|+|++|+|||||+-+|..+.|. ++..|+|+.+.    .++++.++++|||++|+++|+.+...+++..+++++||
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY   88 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY   88 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence            56789999999999999999988876 45667776643    35567899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      |+++.+||.+...|+..+..+-  ...|-++|+||.|.++........   ...++.+.++.+|++|+|.++|++..|..
T Consensus        89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~d---Ar~~A~~mgie~FETSaKe~~NvE~mF~c  163 (198)
T KOG0079|consen   89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTED---ARAFALQMGIELFETSAKENENVEAMFHC  163 (198)
T ss_pred             ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHH---HHHHHHhcCchheehhhhhcccchHHHHH
Confidence            9999999999999998886543  478999999999998754322111   12234456677999999999999999999


Q ss_pred             HHHHhh
Q 030192          173 LSNNIA  178 (181)
Q Consensus       173 i~~~~~  178 (181)
                      |.+.+.
T Consensus       164 it~qvl  169 (198)
T KOG0079|consen  164 ITKQVL  169 (198)
T ss_pred             HHHHHH
Confidence            887654

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.97  E-value=5e-30  Score=179.40  Aligned_cols=157  Identities=15%  Similarity=0.186  Sum_probs=111.9

Q ss_pred             ccEEEEEcCCCCChHHHHh-hHhcCCc-----c-cccCccce-e-EE-----------EEEECCEEEEEEEcCCCCCccc
Q 030192           17 EMRILMVGLDAAGKTTILY-KLKLGEI-----V-TTIPTIGF-N-VE-----------TVEYKNISFTVWDVGGQDKIRP   76 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~-~l~~~~~-----~-~~~~~~~~-~-~~-----------~~~~~~~~~~i~D~~g~~~~~~   76 (181)
                      .+||+++|++|+|||||+. ++.+..+     . .+.||.+. . +.           .+++..+.+++|||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 5654432     2 34577642 1 11           2344578999999999875  2


Q ss_pred             chhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----------------HhHHH
Q 030192           77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----------------AAEIT  140 (181)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----------------~~~~~  140 (181)
                      ....+++++|++++|||++++.++..+...|...+.... .+.|+++|+||+|+.+...                ...+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            455688999999999999999999999754434333322 4789999999999864210                01122


Q ss_pred             hhhCCCcccCcceEEEEccccCCCChHHHHHHHHHH
Q 030192          141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN  176 (181)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~  176 (181)
                      .......++..+++|++|||++|.||+++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            222233344556689999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PLN03110 Rab GTPase; Provisional

Probab=99.97  E-value=9e-30  Score=181.08  Aligned_cols=160  Identities=21%  Similarity=0.355  Sum_probs=126.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +..+||+++|++|+|||||+++|.+..+. .+.+|.+..+.  .+..  ..+.+++||++|++++...+..+++.+++++
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            35689999999999999999999998876 45677776543  3333  3478999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.... ++..+.+.    ...+++++++||++|.|+++
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~  164 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK  164 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999888877665432 257999999999998654322 12222221    22356899999999999999


Q ss_pred             HHHHHHHHhhh
Q 030192          169 GLDWLSNNIAS  179 (181)
Q Consensus       169 ~~~~i~~~~~~  179 (181)
                      +|+++...+.+
T Consensus       165 lf~~l~~~i~~  175 (216)
T PLN03110        165 AFQTILLEIYH  175 (216)
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=3.7e-29  Score=180.64  Aligned_cols=156  Identities=18%  Similarity=0.207  Sum_probs=122.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccce-eEEEEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-NVETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      ++|+++|++|+|||||+++|.++.+.. +.||.+. ....+.  +..+.+.+|||+|++.+...+..++..+|++++|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            489999999999999999999888764 4566642 222333  345789999999999998888888899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcC--------CCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192           94 SNDRDRVVEARDELHRMLNE--------DELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~--------~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  163 (181)
                      ++++++++.+..|+..+...        ....++|+++|+||+|+..  ....+++.+.....    ..+.++++||++|
T Consensus        81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----~~~~~~evSAktg  156 (247)
T cd04143          81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----ENCAYFEVSAKKN  156 (247)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----CCCEEEEEeCCCC
Confidence            99999999998888777543        1235799999999999974  23444444443321    2457899999999


Q ss_pred             CChHHHHHHHHHHh
Q 030192          164 EGLYEGLDWLSNNI  177 (181)
Q Consensus       164 ~gv~~~~~~i~~~~  177 (181)
                      .|++++|+++.+..
T Consensus       157 ~gI~elf~~L~~~~  170 (247)
T cd04143         157 SNLDEMFRALFSLA  170 (247)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998854

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=9.5e-30  Score=174.51  Aligned_cols=156  Identities=17%  Similarity=0.244  Sum_probs=122.0

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      ++|+++|++|+|||||++++.++.+.. ..|+.+..+ ..+.  ...+.+++||+||++++..++..+++.++++++|||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~   81 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS   81 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence            689999999999999999999888753 455555333 2233  344789999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcc-eEEEEccccCCCChHHHH
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~gv~~~~  170 (181)
                      ++++++++....|...+.......+.|+++++||.|+.+...  .++....     .+..+ .+++++||++|.|++++|
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~~SA~~~~~i~~~f  156 (168)
T cd04177          82 VTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSL-----SQQWGNVPFYETSARKRTNVDEVF  156 (168)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHH-----HHHcCCceEEEeeCCCCCCHHHHH
Confidence            999999999988877776544446799999999999865432  1121111     11222 578999999999999999


Q ss_pred             HHHHHHhh
Q 030192          171 DWLSNNIA  178 (181)
Q Consensus       171 ~~i~~~~~  178 (181)
                      .+++..+.
T Consensus       157 ~~i~~~~~  164 (168)
T cd04177         157 IDLVRQII  164 (168)
T ss_pred             HHHHHHHh
Confidence            99987653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.97  E-value=2.5e-29  Score=171.43  Aligned_cols=155  Identities=20%  Similarity=0.405  Sum_probs=122.8

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEE--EECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+||+++|++|+|||||++++.+..+.. ..++.+..+  ..+  ....+.+.+||+||++++...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            3799999999999999999999998775 566666433  233  33457899999999999999899999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +|+++++++.....|+..+..... .+.|+++++||+|+....  ..++.....     +..++.++++||++|.|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l  154 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYA-----DENGLLFFETSAKTGENVNEL  154 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence            999999999999888877766543 679999999999987422  222222211     112357999999999999999


Q ss_pred             HHHHHHHh
Q 030192          170 LDWLSNNI  177 (181)
Q Consensus       170 ~~~i~~~~  177 (181)
                      |+++.+.+
T Consensus       155 ~~~l~~~l  162 (163)
T cd01860         155 FTEIAKKL  162 (163)
T ss_pred             HHHHHHHh
Confidence            99998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=1.4e-29  Score=174.51  Aligned_cols=159  Identities=18%  Similarity=0.194  Sum_probs=117.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      +||+++|++|+|||||++++.++.+.. +.|+....+ ..+..  ..+.+.+||+||++++...+..+++.+|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            589999999999999999999988764 345543222 12333  34668899999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---------hhCCCcccCcc-eEEEEccccCC
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD---------KLGLHSLRQRH-WYIQSTCATSG  163 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~S~~~~  163 (181)
                      ++++++++.....|...+... ..++|+++++||+|+.+.........         .......+..+ .+++++||++|
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  159 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ  159 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence            999999988876555555433 46899999999999865321111110         00111112223 26899999999


Q ss_pred             CChHHHHHHHHHHh
Q 030192          164 EGLYEGLDWLSNNI  177 (181)
Q Consensus       164 ~gv~~~~~~i~~~~  177 (181)
                      .|++++|+.+++.+
T Consensus       160 ~gi~~~f~~~~~~~  173 (174)
T cd04135         160 KGLKTVFDEAILAI  173 (174)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04142 RRP22 RRP22 subfamily

Probab=99.97  E-value=2e-29  Score=176.88  Aligned_cols=159  Identities=17%  Similarity=0.152  Sum_probs=116.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccc--------hhhcccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPL--------WRHYFQN   84 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~--------~~~~~~~   84 (181)
                      +||+++|++|+|||||++++.++.+.. +.|+.+...  ..+..  ..+.+++|||||...+...        ...+++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999988764 466665432  22333  3478999999997654211        2344688


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEcccc
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCAT  161 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~  161 (181)
                      +|++++|||++++++++....|+..+....  ...++|+++|+||+|+...... .+..+.+.   .+..++++++|||+
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~e~Sak  157 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV---RKSWKCGYLECSAK  157 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH---HHhcCCcEEEecCC
Confidence            999999999999999999988887776543  2357999999999999653211 11111110   11234579999999


Q ss_pred             CCCChHHHHHHHHHHhhh
Q 030192          162 SGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~~~  179 (181)
                      +|.|++++|+.+.+.+..
T Consensus       158 ~g~~v~~lf~~i~~~~~~  175 (198)
T cd04142         158 YNWHILLLFKELLISATT  175 (198)
T ss_pred             CCCCHHHHHHHHHHHhhc
Confidence            999999999999987654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=2.3e-29  Score=171.34  Aligned_cols=155  Identities=25%  Similarity=0.437  Sum_probs=122.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|+|||||++++.+..+.. ..|+.+..+.  .+..  ..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            589999999999999999999988753 5566665432  2333  4478999999999999988899999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      |+++++++.....|+..+.......+.|+++++||+|+.... ..++....     .+..+++++++|+++|.|++++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~~~~  155 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKF-----ARKHNMLFIETSAKTRDGVQQAFE  155 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHH-----HHHcCCEEEEEecCCCCCHHHHHH
Confidence            999999999888877766665555689999999999997432 22222221     122345799999999999999999


Q ss_pred             HHHHHh
Q 030192          172 WLSNNI  177 (181)
Q Consensus       172 ~i~~~~  177 (181)
                      .+.+.+
T Consensus       156 ~~~~~~  161 (161)
T cd01863         156 ELVEKI  161 (161)
T ss_pred             HHHHhC
Confidence            988753

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01861 Rab6 Rab6 subfamily

Probab=99.97  E-value=1.6e-29  Score=172.02  Aligned_cols=154  Identities=20%  Similarity=0.388  Sum_probs=120.4

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      .||+++|++|||||||++++.+..+. ...|+.+..+  ..+...  .+.+++||+||+.++...+..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999988875 3456655443  233333  367999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |+++++++.....|+..+..... .+.|+++++||+|+.+..  ..++.....     +..+++++++|++++.|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~  154 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA-----KELNAMFIETSAKAGHNVKELF  154 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHHHH
Confidence            99999999999988887765432 369999999999995432  222222221     1223578999999999999999


Q ss_pred             HHHHHHh
Q 030192          171 DWLSNNI  177 (181)
Q Consensus       171 ~~i~~~~  177 (181)
                      .++.+.+
T Consensus       155 ~~i~~~l  161 (161)
T cd01861         155 RKIASAL  161 (161)
T ss_pred             HHHHHhC
Confidence            9998754

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=2.7e-29  Score=171.99  Aligned_cols=160  Identities=14%  Similarity=0.212  Sum_probs=117.4

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE-E--EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-E--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   94 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (181)
                      +||+++|++|+|||||++++.++.+....++....+ .  .+....+++.+|||||++++...+..++..+|++++|||+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence            489999999999999999999988865444322111 1  2333668999999999988877777778999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC--CCcccCcceEEEEccccCCCChHHHHHH
Q 030192           95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      ++++++.....+|...+.... .+.|+++|+||+|+.+........+...  ...+. ....++++||++|.|++++|..
T Consensus        81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~lf~~  158 (166)
T cd01893          81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFR-EIETCVECSAKTLINVSEVFYY  158 (166)
T ss_pred             CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHh-cccEEEEeccccccCHHHHHHH
Confidence            999999888766666555433 4799999999999976543211111100  00000 0126889999999999999999


Q ss_pred             HHHHhhh
Q 030192          173 LSNNIAS  179 (181)
Q Consensus       173 i~~~~~~  179 (181)
                      +...+..
T Consensus       159 ~~~~~~~  165 (166)
T cd01893         159 AQKAVLH  165 (166)
T ss_pred             HHHHhcC
Confidence            9887754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=4.5e-30  Score=167.53  Aligned_cols=161  Identities=22%  Similarity=0.409  Sum_probs=131.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--E---EECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--V---EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ..+++.++|++-+|||||++.|..+++.+ ..||.|.++..  +   .+..+++++|||+|+++|+.+..+|++++-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            45899999999999999999999999885 47898877632  2   235689999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      +|||+++..||+....|..+.......+.++ ..+|++|+|+....   ++..+....+++..+..++|+|+++|.||++
T Consensus        87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR---qVt~EEaEklAa~hgM~FVETSak~g~NVeE  163 (213)
T KOG0091|consen   87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR---QVTAEEAEKLAASHGMAFVETSAKNGCNVEE  163 (213)
T ss_pred             EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc---cccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence            9999999999999999998887766655555 46888999997643   2222222233445566799999999999999


Q ss_pred             HHHHHHHHhhh
Q 030192          169 GLDWLSNNIAS  179 (181)
Q Consensus       169 ~~~~i~~~~~~  179 (181)
                      .|..+.+.+..
T Consensus       164 AF~mlaqeIf~  174 (213)
T KOG0091|consen  164 AFDMLAQEIFQ  174 (213)
T ss_pred             HHHHHHHHHHH
Confidence            99999987754

>cd01862 Rab7 Rab7 subfamily

Probab=99.96  E-value=1e-28  Score=169.79  Aligned_cols=159  Identities=15%  Similarity=0.269  Sum_probs=120.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|||||||++++.+..+.. ..++.+..+  ..+..  ..+.+++||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            589999999999999999999987653 345555433  22333  4467889999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCC---CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      |+++++++.....|...+.....   ..++|+++|+||+|+.++.  ..++........    ...+++++|+++|.|++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gv~  156 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN----GNIPYFETSAKEAINVE  156 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc----CCceEEEEECCCCCCHH
Confidence            99999888888777665544322   3479999999999997422  233332222111    12478999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      ++++++.+.+.++
T Consensus       157 ~l~~~i~~~~~~~  169 (172)
T cd01862         157 QAFETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.96  E-value=2.2e-29  Score=173.46  Aligned_cols=157  Identities=17%  Similarity=0.197  Sum_probs=112.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE-EE--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      +|++++|++|+|||||+.++.++.+... .||....+ ..  ++...+.+.+||+||++++...+..+++++|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            5899999999999999999998877643 44432111 12  22335788999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---------hHHHhhhCCCcccCcce-EEEEccccCC
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---------AEITDKLGLHSLRQRHW-YIQSTCATSG  163 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~S~~~~  163 (181)
                      ++++++++.....|...+... ..+.|+++++||+|+......         ..+.......+.+..+. .++++||++|
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~  159 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ  159 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            999999988865444433322 246999999999998643110         00000001111122233 7999999999


Q ss_pred             CChHHHHHHHHH
Q 030192          164 EGLYEGLDWLSN  175 (181)
Q Consensus       164 ~gv~~~~~~i~~  175 (181)
                      .|++++|+.+.-
T Consensus       160 ~~v~~lf~~~~~  171 (173)
T cd04130         160 KNLKEVFDTAIL  171 (173)
T ss_pred             CCHHHHHHHHHh
Confidence            999999988764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.96  E-value=8.3e-29  Score=168.86  Aligned_cols=157  Identities=18%  Similarity=0.310  Sum_probs=123.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      +||+++|++|+|||||++++....+... .++.+..+.   .+....+.+.+||+||+.++...+..+++.+|++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            5899999999999999999998877533 444333222   223345789999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      ++++.++.....|+..+.......++|+++|+||+|+....  ..++.....     ++.+.+++++||++|.|++++|+
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~  155 (164)
T cd04139          81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWGVPYVETSAKTRQNVEKAFY  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEeeCCCCCCHHHHHH
Confidence            99999999999999888876555689999999999987621  222211111     12234789999999999999999


Q ss_pred             HHHHHhhh
Q 030192          172 WLSNNIAS  179 (181)
Q Consensus       172 ~i~~~~~~  179 (181)
                      .+.+.+.+
T Consensus       156 ~l~~~~~~  163 (164)
T cd04139         156 DLVREIRQ  163 (164)
T ss_pred             HHHHHHHh
Confidence            99987765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PLN03108 Rab family protein; Provisional

Probab=99.96  E-value=2e-29  Score=178.62  Aligned_cols=159  Identities=18%  Similarity=0.308  Sum_probs=124.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +..+||+++|++|+|||||++++.+..+.. ..++.+..+.  .+..  ..+.+.+||++|++++...+..+++.+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            346899999999999999999999887653 4566665542  2333  4467999999999999988999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||++++++++.+..|+..+.... ..+.|+++++||+|+.+..  ..++..+..     +..+++++++||+++.|++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~  157 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVE  157 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence            9999999999999888877665432 2579999999999987532  222222221     2234579999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|.++++.+.+
T Consensus       158 e~f~~l~~~~~~  169 (210)
T PLN03108        158 EAFIKTAAKIYK  169 (210)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.96  E-value=3.5e-29  Score=170.93  Aligned_cols=154  Identities=18%  Similarity=0.285  Sum_probs=118.4

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC--Ccc-cccCccceeEE--EEE---ECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVE--TVE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~--~~~-~~~~~~~~~~~--~~~---~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +||+++|++|||||||++++..+  .+. .+.++.+..+.  .+.   ...+++.+||+||++.+...+..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  444 45667665542  222   24589999999999999888899999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      +|||+++++++.....|+..+....  .++|+++|+||+|+.+...... ..+.+.    ...+.+++++||++|.|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~  154 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE  154 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence            9999999999988887776655432  4699999999999865432221 111111    11234789999999999999


Q ss_pred             HHHHHHHHh
Q 030192          169 GLDWLSNNI  177 (181)
Q Consensus       169 ~~~~i~~~~  177 (181)
                      +|+.+.+.+
T Consensus       155 l~~~l~~~~  163 (164)
T cd04101         155 PFESLARAF  163 (164)
T ss_pred             HHHHHHHHh
Confidence            999998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.96  E-value=1.5e-28  Score=169.59  Aligned_cols=160  Identities=18%  Similarity=0.296  Sum_probs=117.5

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +.||+++|++|||||||++++.++.+.. +.|+.+..+ ..+..  ..+.+.+|||+|++++...+..++.++|++++||
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            3689999999999999999999988764 456655433 23333  4568899999999999988888889999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhC--------CCcccCc-ceEEEEccccC
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLG--------LHSLRQR-HWYIQSTCATS  162 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~S~~~  162 (181)
                      |+++++++......|...+... ..+.|+++++||+|+.+..... ++.....        ....+.. ..++++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            9999999988876555544432 2478999999999986532111 1110000        0001111 23789999999


Q ss_pred             CCChHHHHHHHHHHh
Q 030192          163 GEGLYEGLDWLSNNI  177 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~  177 (181)
                      |.|++++|.++.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.1e-29  Score=159.74  Aligned_cols=180  Identities=56%  Similarity=0.943  Sum_probs=167.2

Q ss_pred             CchhHHHHHHhhhcc-cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchh
Q 030192            1 MGLTFTKLFSRLFAK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR   79 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~-~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (181)
                      |+--++.+++.+... +..+++++|.-|+||+++.-++.-.+.....|+++++..++.+.+.++++||..|+-..+..|.
T Consensus         1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR   80 (182)
T KOG0072|consen    1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR   80 (182)
T ss_pred             CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence            455567788887775 8999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcc
Q 030192           80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC  159 (181)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      .|+.+.|++|||+|.++.+........+..++.+.++++..+++++||.|........+....+++..++...+.++++|
T Consensus        81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS  160 (182)
T KOG0072|consen   81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS  160 (182)
T ss_pred             HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence            99999999999999999999999999999999998888999999999999988888889999999999999999999999


Q ss_pred             ccCCCChHHHHHHHHHHhhhc
Q 030192          160 ATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       160 ~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      |.+|+|++++++|+.+-+.++
T Consensus       161 A~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  161 AVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             cccccCCcHHHHHHHHHHhcc
Confidence            999999999999999988765

>cd04148 RGK RGK subfamily

Probab=99.96  E-value=1.1e-28  Score=175.94  Aligned_cols=155  Identities=18%  Similarity=0.163  Sum_probs=115.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc--cccCccc--eeEEEEE--ECCEEEEEEEcCCCCCcccchhhccc-cccEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVE--YKNISFTVWDVGGQDKIRPLWRHYFQ-NTQGLIF   90 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~--~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~   90 (181)
                      +||+++|++|+|||||+++|..+.+.  .+.++.+  .....+.  +....+.+||++|++.  .....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999887764  3445543  2223333  3567899999999982  23344556 8999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      |||+++++++....+|+..+.......++|+++|+||+|+.+..... +....+    ....+++++++||++|.|++++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----a~~~~~~~~e~SA~~~~gv~~l  154 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRAC----AVVFDCKFIETSAGLQHNVDEL  154 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHH----HHHcCCeEEEecCCCCCCHHHH
Confidence            99999999999888888777665444679999999999986543211 111111    1223457899999999999999


Q ss_pred             HHHHHHHhh
Q 030192          170 LDWLSNNIA  178 (181)
Q Consensus       170 ~~~i~~~~~  178 (181)
                      |+++++.+.
T Consensus       155 ~~~l~~~~~  163 (221)
T cd04148         155 LEGIVRQIR  163 (221)
T ss_pred             HHHHHHHHH
Confidence            999998875

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.96  E-value=6.9e-29  Score=169.71  Aligned_cols=155  Identities=15%  Similarity=0.221  Sum_probs=113.9

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE---EEEEECCEEEEEEEcCCCCC-cccchhhccccccEEEEEEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV---ETVEYKNISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~d   93 (181)
                      ||+++|++|+|||||++++....+.. +.++....+   ..+++..+.+++||+||+.+ .......+++.+|++++|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            58999999999999999999877653 344443222   22333456799999999985 34456778899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCC-CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCC-CChHHH
Q 030192           94 SNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG-EGLYEG  169 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~-~gv~~~  169 (181)
                      ++++++++.+..|+..+..... ..++|+++|+||+|+.+..  ..++..+.     .+..+.+++++||++| .|++++
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~~~~v~~~  155 (165)
T cd04146          81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL-----ASELGCLFFEVSAAEDYDGVHSV  155 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHH-----HHHcCCEEEEeCCCCCchhHHHH
Confidence            9999999988887766554332 3579999999999986432  12221111     1122347899999999 599999


Q ss_pred             HHHHHHHhh
Q 030192          170 LDWLSNNIA  178 (181)
Q Consensus       170 ~~~i~~~~~  178 (181)
                      |..+++.+.
T Consensus       156 f~~l~~~~~  164 (165)
T cd04146         156 FHELCREVR  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999998765

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=8.6e-29  Score=170.00  Aligned_cols=157  Identities=21%  Similarity=0.283  Sum_probs=116.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE---EEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~---~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      +||+++|++|+|||||+++|.+..+. ...|+.....   ....+..+.+++||+||++++......+++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999998874 3344433222   1223346789999999999888888888899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH--------HHhhhCCCcccCcce-EEEEccccCCC
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--------ITDKLGLHSLRQRHW-YIQSTCATSGE  164 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~S~~~~~  164 (181)
                      ++++.++......|...+.... .++|+++|+||+|+.+......        +............+. +++++||++|.
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            9999999888776666555433 4799999999999876542211        111111122222233 79999999999


Q ss_pred             ChHHHHHHHHH
Q 030192          165 GLYEGLDWLSN  175 (181)
Q Consensus       165 gv~~~~~~i~~  175 (181)
                      |+++++.++.+
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04123 Rab21 Rab21 subfamily

Probab=99.96  E-value=6e-28  Score=164.23  Aligned_cols=154  Identities=21%  Similarity=0.348  Sum_probs=118.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|+|||||++++.+..+.. ..++.....  ..+.  ...+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            589999999999999999999887653 233433222  2233  24467999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |++++++++....|+..+..... .++|+++++||+|+.....  .+++.+..     +..+.+++++|++++.|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~  154 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF  154 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999888887766655433 3799999999999875332  22222222     1224468899999999999999


Q ss_pred             HHHHHHh
Q 030192          171 DWLSNNI  177 (181)
Q Consensus       171 ~~i~~~~  177 (181)
                      +++.+.+
T Consensus       155 ~~l~~~~  161 (162)
T cd04123         155 LSLAKRM  161 (162)
T ss_pred             HHHHHHh
Confidence            9998875

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=8.2e-28  Score=169.03  Aligned_cols=156  Identities=17%  Similarity=0.231  Sum_probs=120.9

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccc-cCccc-eeEEEEEECC--EEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   94 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~-~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (181)
                      ||+++|++|+|||||++++.+..+... .++.. .....+...+  +.+++||+||+..+..++..+++.+|++++|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            689999999999999999999887643 34432 2223344444  7899999999999998888899999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-MN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      +++++++....|+..+.......++|+++|+||+|+.+. ..  .++..+...    ...+.+++++||++|.|++++|+
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~  156 (198)
T cd04147          81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK  156 (198)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence            999999999888888777655567999999999998653 11  112221111    12234688999999999999999


Q ss_pred             HHHHHhh
Q 030192          172 WLSNNIA  178 (181)
Q Consensus       172 ~i~~~~~  178 (181)
                      ++.+.+.
T Consensus       157 ~l~~~~~  163 (198)
T cd04147         157 ELLRQAN  163 (198)
T ss_pred             HHHHHhh
Confidence            9998764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.8e-30  Score=167.89  Aligned_cols=160  Identities=21%  Similarity=0.395  Sum_probs=132.9

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEE--EE-----------ECCEEEEEEEcCCCCCcccchhhccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VE-----------YKNISFTVWDVGGQDKIRPLWRHYFQ   83 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~--~~-----------~~~~~~~i~D~~g~~~~~~~~~~~~~   83 (181)
                      +|.+.+|++|+||||++.++..++|... ..|+|+.+..  +-           ...+.+++|||+|+++|+.+...+++
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR   89 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR   89 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence            5778899999999999999999988755 6677776543  21           13478999999999999999999999


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192           84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  163 (181)
                      .+=+++++||+++.+||.+...|+.++..+....++-|++++||+|+.+...+.+-   .....+.+.++|||++||-+|
T Consensus        90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~---qa~~La~kyglPYfETSA~tg  166 (219)
T KOG0081|consen   90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSED---QAAALADKYGLPYFETSACTG  166 (219)
T ss_pred             hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHH---HHHHHHHHhCCCeeeeccccC
Confidence            99999999999999999999999999999988899999999999999775432221   112223345567999999999


Q ss_pred             CChHHHHHHHHHHhhhc
Q 030192          164 EGLYEGLDWLSNNIASK  180 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~~~  180 (181)
                      .||++..+.+++.++++
T Consensus       167 ~Nv~kave~LldlvM~R  183 (219)
T KOG0081|consen  167 TNVEKAVELLLDLVMKR  183 (219)
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            99999999999988765

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.96  E-value=3.8e-28  Score=168.31  Aligned_cols=157  Identities=20%  Similarity=0.286  Sum_probs=123.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCcccee-EEEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~-~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      .||+++|++|+|||||++++.+..+.. ..|+.+.. ...+..  ..+.+.+||+||++++...+..++..++++++|||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            689999999999999999999887753 45554432 233333  34678999999999999899999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      +++..+++....++..++......+.|+++++||+|+.....  .++.....     +..+++++++|++++.|+++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~  156 (180)
T cd04137          82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAAFLESSARENENVEEAFE  156 (180)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999998888865556789999999999864321  11222111     12235789999999999999999


Q ss_pred             HHHHHhhh
Q 030192          172 WLSNNIAS  179 (181)
Q Consensus       172 ~i~~~~~~  179 (181)
                      ++.+.+..
T Consensus       157 ~l~~~~~~  164 (180)
T cd04137         157 LLIEEIEK  164 (180)
T ss_pred             HHHHHHHH
Confidence            99987754

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00154 Rab Rab family

Probab=99.95  E-value=2.5e-27  Score=160.31  Aligned_cols=151  Identities=23%  Similarity=0.436  Sum_probs=119.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEEE--EE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|+|||||++++.+..+... .++.+......  ..  ....+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999887754 66666655433  32  3578999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |+++++++.....|+..+..... .++|+++++||+|+..  ....++..+...     ..+.+++++|++++.|+++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~  154 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF  154 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence            99998888888887776665432 4699999999999962  223333333222     245679999999999999999


Q ss_pred             HHHH
Q 030192          171 DWLS  174 (181)
Q Consensus       171 ~~i~  174 (181)
                      .++.
T Consensus       155 ~~i~  158 (159)
T cd00154         155 QSLA  158 (159)
T ss_pred             HHHh
Confidence            9885

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04114 Rab30 Rab30 subfamily

Probab=99.95  E-value=2.1e-27  Score=162.92  Aligned_cols=157  Identities=20%  Similarity=0.355  Sum_probs=118.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ..++|+++|++|+|||||++++....+. ...++.+...  ..+...  .+.+.+||+||++.+...+..++..+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            4589999999999999999999977655 3455555332  233443  4678999999999999988899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      |||+++++++.....|+..+.. ....+.|+++++||+|+.+.... .+..+.+.    +....+++++|+++|.|++++
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l  160 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQ-YANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKL  160 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHH
Confidence            9999998888877776654432 22246999999999998754322 22222221    112357889999999999999


Q ss_pred             HHHHHHHh
Q 030192          170 LDWLSNNI  177 (181)
Q Consensus       170 ~~~i~~~~  177 (181)
                      |+.+.+.+
T Consensus       161 ~~~i~~~~  168 (169)
T cd04114         161 FLDLACRL  168 (169)
T ss_pred             HHHHHHHh
Confidence            99998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04129 Rho2 Rho2 subfamily

Probab=99.95  E-value=4.5e-27  Score=163.91  Aligned_cols=160  Identities=19%  Similarity=0.270  Sum_probs=113.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      .||+++|++|+|||||++++..+.+.. ..++....+. .+.  ...+.+.+||++|++.+......+++.+|++++|||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            589999999999999999998776653 3444433322 222  234678999999998888777777899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-H------HHhhhCCCcccCcc-eEEEEccccCCCC
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-E------ITDKLGLHSLRQRH-WYIQSTCATSGEG  165 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~------~~~~~~~~~~~~~~-~~~~~~S~~~~~g  165 (181)
                      +++++++......|...+.... .+.|+++|+||+|+.+..... +      ..........+..+ .++++|||++|.|
T Consensus        82 i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  160 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG  160 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence            9999999888764444444322 469999999999985421100 0      00000011112223 3689999999999


Q ss_pred             hHHHHHHHHHHhh
Q 030192          166 LYEGLDWLSNNIA  178 (181)
Q Consensus       166 v~~~~~~i~~~~~  178 (181)
                      ++++|+.+.+.+.
T Consensus       161 v~~~f~~l~~~~~  173 (187)
T cd04129         161 VDDVFEAATRAAL  173 (187)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999997654

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00876 Ras Ras family

Probab=99.95  E-value=1.4e-27  Score=162.09  Aligned_cols=154  Identities=21%  Similarity=0.317  Sum_probs=119.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   94 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (181)
                      ||+++|++|||||||++++.+..+... .++.+... ..+...  .+.+++||+||+..+...+..+++.+|++++|+|+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            689999999999999999998776533 44444222 223333  57899999999999988888999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192           95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      ++++++.....++..+........+|+++++||+|+.+..  ..++......     +.+.+++++|++++.|+++++++
T Consensus        81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~  155 (160)
T cd00876          81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL  155 (160)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence            9999999999998888776554679999999999987632  2222222211     22257899999999999999999


Q ss_pred             HHHHh
Q 030192          173 LSNNI  177 (181)
Q Consensus       173 i~~~~  177 (181)
                      +.+.+
T Consensus       156 l~~~i  160 (160)
T cd00876         156 LVREI  160 (160)
T ss_pred             HHhhC
Confidence            98753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.95  E-value=1.4e-26  Score=164.83  Aligned_cols=161  Identities=23%  Similarity=0.356  Sum_probs=127.6

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEE----ECCEEEEEEEcCCCCCcccchhhccccccE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .....+||+++|++|||||||++++..+.+. .+.||.+..+....    ...+.+.+||++|++++...+..++..+++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            3456799999999999999999988877765 45778877665433    256899999999999999888889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +++|||+++..++..+..|+..+....  .+.|+++++||+|+.+.....+...     ..+..++.++++|+++|.|++
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~  157 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQIT-----FHRKKNLQYYDISAKSNYNFE  157 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHH-----HHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999988877765432  4789999999999865432222211     112234578999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      +.|.++.+.+...
T Consensus       158 ~~f~~ia~~l~~~  170 (215)
T PTZ00132        158 KPFLWLARRLTND  170 (215)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887653

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=4.3e-28  Score=157.59  Aligned_cols=162  Identities=20%  Similarity=0.330  Sum_probs=125.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccc--ee--EEEEEECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FN--VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~--~~--~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      .-.+|++++|+.=+|||||+-+++.++|... ..|.-  +.  ...+......+.||||+|+++|.++-+.|++.+++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal   90 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL   90 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence            4568999999999999999999999887632 22221  11  2234446678999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +|||+++++||+....|..++..... ..+.+++|+||+|+.++..+   .......+++.-+..++++||+.+.|+.++
T Consensus        91 LVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~V---t~qeAe~YAesvGA~y~eTSAk~N~Gi~el  166 (218)
T KOG0088|consen   91 LVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQV---TRQEAEAYAESVGALYMETSAKDNVGISEL  166 (218)
T ss_pred             EEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhh---hHHHHHHHHHhhchhheecccccccCHHHH
Confidence            99999999999999999887755432 45788999999998654321   111112223334556889999999999999


Q ss_pred             HHHHHHHhhhc
Q 030192          170 LDWLSNNIASK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |+.+...+.+.
T Consensus       167 Fe~Lt~~MiE~  177 (218)
T KOG0088|consen  167 FESLTAKMIEH  177 (218)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=2.7e-26  Score=157.18  Aligned_cols=154  Identities=16%  Similarity=0.168  Sum_probs=106.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc---cCccceeEEEEEECCEEEEEEEcCCCCCccc---------chhhccccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRP---------LWRHYFQNT   85 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~~   85 (181)
                      .+|+++|++|+|||||++++.+..+...   .+|.+.....+...++.+++|||||......         ........+
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR   80 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence            3799999999999999999998876421   2344455555556778999999999742110         011111236


Q ss_pred             cEEEEEEECCCcccH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192           86 QGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
Q Consensus        86 d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  163 (181)
                      |++++|+|+++..++  .....|+..+....  .+.|+++|+||+|+.+.....+..+.     .+...++++++||++|
T Consensus        81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~  153 (168)
T cd01897          81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEEE-----EELEGEEVLKISTLTE  153 (168)
T ss_pred             CcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHHh-----hhhccCceEEEEeccc
Confidence            899999999887653  44445555443321  47999999999999765433331111     1224567999999999


Q ss_pred             CChHHHHHHHHHHhh
Q 030192          164 EGLYEGLDWLSNNIA  178 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~  178 (181)
                      .|++++++++.+.+.
T Consensus       154 ~gi~~l~~~l~~~~~  168 (168)
T cd01897         154 EGVDEVKNKACELLL  168 (168)
T ss_pred             CCHHHHHHHHHHHhC
Confidence            999999999998763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.94  E-value=5.3e-27  Score=163.42  Aligned_cols=161  Identities=22%  Similarity=0.301  Sum_probs=132.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +..+|.++|.+|+|||+|..+|.++.|.. +.||++..+.   .+..+.+.+.++||+|++++..+...+++..|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            46799999999999999999999999874 5788775443   3445667899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      |+++++.||+.+..++..+.........|+++|+||+|+.+.....   ...+...++.++++++|+||+.+.+++++|.
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~---~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~  158 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVS---EEEGKALARSWGCAFIETSAKLNYNVDEVFY  158 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccC---HHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence            9999999999999999999666665668999999999998742111   1111122455666799999999999999999


Q ss_pred             HHHHHhhh
Q 030192          172 WLSNNIAS  179 (181)
Q Consensus       172 ~i~~~~~~  179 (181)
                      .+...+..
T Consensus       159 ~L~r~~~~  166 (196)
T KOG0395|consen  159 ELVREIRL  166 (196)
T ss_pred             HHHHHHHh
Confidence            99987654

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.94  E-value=4.9e-26  Score=159.62  Aligned_cols=146  Identities=22%  Similarity=0.309  Sum_probs=108.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE-------CCEEEEEEEcCCCCCcccchhhccccccE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY-------KNISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~-------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      +||+++|++|+|||||++++.++.+.. +.||++..+.  .+..       ..+.+++||++|++++...+..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999988764 4677775442  2322       45789999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCC------------------CCCCCeEEEEEeCCCCCCCCCHhHHH-hhhCCCcc
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNED------------------ELRDAVLLVFANKQDLPNAMNAAEIT-DKLGLHSL  148 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~piivv~nK~Dl~~~~~~~~~~-~~~~~~~~  148 (181)
                      +|+|||++++++++++..|+..+....                  ...++|+++|+||+|+.+........ ..-....+
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999998888776531                  12468999999999996542111111 00011123


Q ss_pred             cCcceEEEEccccCC
Q 030192          149 RQRHWYIQSTCATSG  163 (181)
Q Consensus       149 ~~~~~~~~~~S~~~~  163 (181)
                      .+.+.+.++.+++++
T Consensus       161 ~~~~~~~i~~~c~~~  175 (202)
T cd04102         161 EQGNAEEINLNCTNG  175 (202)
T ss_pred             HhcCCceEEEecCCc
Confidence            445556667777753

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=7.9e-27  Score=149.23  Aligned_cols=158  Identities=20%  Similarity=0.326  Sum_probs=130.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE----EEEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ..+|-.++|+-|+|||+|+.+|...+|... +.|++..+    ..+++.++++++|||+|+++|+....+|++.+.+.+.
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            357899999999999999999999998855 55777665    3466788999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |||++.+..+..+..|+.+...... ++..+++++||.|+....  ..++.     ..++...+..+.++|+++|.|+++
T Consensus        90 vyditrrstynhlsswl~dar~ltn-pnt~i~lignkadle~qrdv~yeea-----k~faeengl~fle~saktg~nved  163 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSSWLTDARNLTN-PNTVIFLIGNKADLESQRDVTYEEA-----KEFAEENGLMFLEASAKTGQNVED  163 (215)
T ss_pred             EEEehhhhhhhhHHHHHhhhhccCC-CceEEEEecchhhhhhcccCcHHHH-----HHHHhhcCeEEEEecccccCcHHH
Confidence            9999999999999998887655433 778899999999986543  22222     233444566799999999999999


Q ss_pred             HHHHHHHHhhh
Q 030192          169 GLDWLSNNIAS  179 (181)
Q Consensus       169 ~~~~i~~~~~~  179 (181)
                      .|-...+++..
T Consensus       164 afle~akkiyq  174 (215)
T KOG0097|consen  164 AFLETAKKIYQ  174 (215)
T ss_pred             HHHHHHHHHHH
Confidence            99888777654

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.94  E-value=6.7e-27  Score=159.96  Aligned_cols=163  Identities=17%  Similarity=0.251  Sum_probs=129.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE---EEEE-ECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV---ETVE-YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~---~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ..+|+++||+.++|||+++-.+..+.|+ .+.||.--++   ..+. +..+++.+|||+|+++|+++++..+.++|.+++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~   82 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL   82 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence            5689999999999999999999988887 4577776444   3343 567899999999999999999889999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhh--------hCCCcccCcc-eEEEEccc
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDK--------LGLHSLRQRH-WYIQSTCA  160 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~--------~~~~~~~~~~-~~~~~~S~  160 (181)
                      ||++.++.++.+....|...+.++. ++.|+|+|++|.|+.+.. ..+.+...        .+...+++.+ ..|+||||
T Consensus        83 cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa  161 (198)
T KOG0393|consen   83 CFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA  161 (198)
T ss_pred             EEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence            9999999999999998888888776 899999999999998432 11111110        0011111222 47999999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030192          161 TSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~  179 (181)
                      ++..|++++|+..+.....
T Consensus       162 ~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  162 LTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             hhhCCcHHHHHHHHHHHhc
Confidence            9999999999999987754

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.1e-27  Score=155.74  Aligned_cols=179  Identities=37%  Similarity=0.707  Sum_probs=156.9

Q ss_pred             chhHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCc--------ccccCccceeEEEEEECCEEEEEEEcCCCCC
Q 030192            2 GLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI--------VTTIPTIGFNVETVEYKNISFTVWDVGGQDK   73 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (181)
                      =.+.+.+.+..+.+..+.++|+|..++|||||+.+......        ..-.||.+.+..++......+.+||..|++.
T Consensus         2 ~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~   81 (197)
T KOG0076|consen    2 FTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQES   81 (197)
T ss_pred             hhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHH
Confidence            34567788888999999999999999999999999854331        2336789999999988899999999999999


Q ss_pred             cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-CcccCcc
Q 030192           74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL-HSLRQRH  152 (181)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~  152 (181)
                      .+.+|..|+..+|++++++|+++++.++.....+.....+-...+.|+++.+||.|+.+..+..++...++. .....++
T Consensus        82 lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd  161 (197)
T KOG0076|consen   82 LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRD  161 (197)
T ss_pred             HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCcc
Confidence            999999999999999999999999999999998888888777789999999999999998888899888873 3344567


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192          153 WYIQSTCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       153 ~~~~~~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      .++.++||.+|+||++...|++..+.+.
T Consensus       162 ~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  162 NPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             CccccchhhhcccHHHHHHHHHHHHhhc
Confidence            8899999999999999999999988653

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=9e-26  Score=154.86  Aligned_cols=156  Identities=26%  Similarity=0.251  Sum_probs=107.7

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECCE-EEEEEEcCCCCC----cccchhhc---cccccE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNI-SFTVWDVGGQDK----IRPLWRHY---FQNTQG   87 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~-~~~i~D~~g~~~----~~~~~~~~---~~~~d~   87 (181)
                      +|+++|++|||||||++++.+.... ..  .+|.......+...+. .+.+|||||..+    .......+   ++.+|+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~   81 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL   81 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence            6899999999999999999876542 11  2233333344555555 999999999632    22222333   346999


Q ss_pred             EEEEEECCCc-ccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           88 LIFVVDSNDR-DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        88 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      +++|+|++++ +++.....|...+.... ...++|+++|+||+|+.+.....+....+...   ....+++++|++++.|
T Consensus        82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~g  158 (170)
T cd01898          82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE---LWGKPVFPISALTGEG  158 (170)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhh---CCCCCEEEEecCCCCC
Confidence            9999999988 77877776666554432 12468999999999997654433332222111   0244688999999999


Q ss_pred             hHHHHHHHHHHh
Q 030192          166 LYEGLDWLSNNI  177 (181)
Q Consensus       166 v~~~~~~i~~~~  177 (181)
                      ++++++++.+.+
T Consensus       159 i~~l~~~i~~~~  170 (170)
T cd01898         159 LDELLRKLAELL  170 (170)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998754

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.94  E-value=3.8e-26  Score=145.82  Aligned_cols=164  Identities=47%  Similarity=0.803  Sum_probs=153.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECC-EEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      .+.++|+++|-.++|||||+..|....+....||.|++...+..++ ..+++||.+|+...+..|..|+.+.|++|||+|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVID   94 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVID   94 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEe
Confidence            7889999999999999999999999998888999999999998865 899999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHH
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL  173 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i  173 (181)
                      +++...++++.+-+.+++........|+.+..||.|+.-+...+++...+.+..++.+.|++.+||+.+++|+.+-.+|+
T Consensus        95 S~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv  174 (185)
T KOG0074|consen   95 STDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWV  174 (185)
T ss_pred             CCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhh
Confidence            99999999999999999888887889999999999998888889999999999999999999999999999999999998


Q ss_pred             HHHhh
Q 030192          174 SNNIA  178 (181)
Q Consensus       174 ~~~~~  178 (181)
                      .+...
T Consensus       175 ~sn~~  179 (185)
T KOG0074|consen  175 QSNPE  179 (185)
T ss_pred             hcCCC
Confidence            87654

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=2.1e-25  Score=154.34  Aligned_cols=150  Identities=18%  Similarity=0.216  Sum_probs=107.4

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCC--c-----c-cccC------ccceeE----EEE-----EECCEEEEEEEcCCCCCcc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGE--I-----V-TTIP------TIGFNV----ETV-----EYKNISFTVWDVGGQDKIR   75 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~--~-----~-~~~~------~~~~~~----~~~-----~~~~~~~~i~D~~g~~~~~   75 (181)
                      +|+++|++|+|||||+++|.+..  +     . ...+      +.+...    ..+     ...++.+++|||||+.++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999998742  1     1 1111      112221    112     3357889999999999999


Q ss_pred             cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccCcc
Q 030192           76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRH  152 (181)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~  152 (181)
                      ..+..+++.+|++++|+|+++..+.+....++. ...    .++|+++|+||+|+.+...   .+++.+.++..     .
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~  151 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P  151 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence            999999999999999999988766655544432 222    4689999999999865321   12333333322     1


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHhh
Q 030192          153 WYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       153 ~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ..++++||++|.|++++++++.+.+.
T Consensus       152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         152 SEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            24889999999999999999988764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=4.1e-25  Score=150.59  Aligned_cols=152  Identities=23%  Similarity=0.167  Sum_probs=101.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCC---ccc-c--cCccceeEEEEEEC-CEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGE---IVT-T--IPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~---~~~-~--~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      +.|+++|++|+|||||+++|.+..   +.. .  ..|.+..+..+... +..+.+|||||++++......+++.+|++++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            468999999999999999998643   221 1  22344444444444 6789999999999887766777889999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      |+|+++.... .....+. .+...  ..+|+++++||+|+.+...    .+++.+.+....  ..+.+++++|+++|.|+
T Consensus        81 V~d~~~~~~~-~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v  154 (164)
T cd04171          81 VVAADEGIMP-QTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--LADAPIFPVSAVTGEGI  154 (164)
T ss_pred             EEECCCCccH-hHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--cCCCcEEEEeCCCCcCH
Confidence            9999763211 1111111 11111  1248999999999975421    122222222110  13457999999999999


Q ss_pred             HHHHHHHHH
Q 030192          167 YEGLDWLSN  175 (181)
Q Consensus       167 ~~~~~~i~~  175 (181)
                      +++++.+..
T Consensus       155 ~~l~~~l~~  163 (164)
T cd04171         155 EELKEYLDE  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.93  E-value=9.9e-27  Score=147.27  Aligned_cols=150  Identities=19%  Similarity=0.439  Sum_probs=123.5

Q ss_pred             EEEcCCCCChHHHHhhHhcCCccc--ccCccceeEEE----EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192           21 LMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   94 (181)
Q Consensus        21 ~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (181)
                      +++|++++|||+|+-++..+.|..  -.+|.|+.+..    +...++++++|||+|+++|+.....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            368999999999999998777653  36677777643    445678999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      .+..||.+...|+.++-.... ....+.+++||+|+.++     +..+.+.+.+++        |+.++|+++|.|++..
T Consensus        81 ankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i--------pfmetsaktg~nvd~a  151 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI--------PFMETSAKTGFNVDLA  151 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHHHHCC--------CceeccccccccHhHH
Confidence            999999999999887755432 45778899999999653     344556665555        5889999999999999


Q ss_pred             HHHHHHHhhh
Q 030192          170 LDWLSNNIAS  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |-.|.+.+.+
T Consensus       152 f~~ia~~l~k  161 (192)
T KOG0083|consen  152 FLAIAEELKK  161 (192)
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=6.6e-25  Score=154.97  Aligned_cols=153  Identities=21%  Similarity=0.215  Sum_probs=107.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc---ccCccceeEEEEEECC-EEEEEEEcCCCCCc---------ccchhhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKN-ISFTVWDVGGQDKI---------RPLWRHY   81 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~---------~~~~~~~   81 (181)
                      +..++|+++|++|||||||++++.+..+..   ..+|.......+...+ ..+.+|||||..+.         ...+ ..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~  117 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE  117 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence            446899999999999999999999876431   2344444444455444 38999999997321         1111 22


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcccc
Q 030192           82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT  161 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  161 (181)
                      +..+|++++|+|++++.+......+. ..+......++|+++|+||+|+.+.....        ..+.....+++++||+
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~~~~~-~~l~~~~~~~~~viiV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~Sa~  188 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQIETVE-KVLKELGAEDIPMILVLNKIDLLDDEELE--------ERLEAGRPDAVFISAK  188 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHHHHHH-HHHHHcCcCCCCEEEEEEccccCChHHHH--------HHhhcCCCceEEEEcC
Confidence            46799999999999887766554333 33333333468999999999987643222        1122334568899999


Q ss_pred             CCCChHHHHHHHHHHh
Q 030192          162 SGEGLYEGLDWLSNNI  177 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~  177 (181)
                      ++.|++++++++.+.+
T Consensus       189 ~~~gi~~l~~~L~~~~  204 (204)
T cd01878         189 TGEGLDELLEAIEELL  204 (204)
T ss_pred             CCCCHHHHHHHHHhhC
Confidence            9999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK04213 GTP-binding protein; Provisional

Probab=99.93  E-value=1e-25  Score=158.79  Aligned_cols=160  Identities=23%  Similarity=0.318  Sum_probs=105.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEEECCEEEEEEEcCC-----------CCCcccchhhcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYF   82 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~   82 (181)
                      ...++|+++|++|+|||||++++.+..+.. ..|+.+.....+...  .+.+|||||           +++++..+..++
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI   84 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence            456899999999999999999999877542 334333333333333  689999999           344555554454


Q ss_pred             c----cccEEEEEEECCCcccHH---------HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCC-
Q 030192           83 Q----NTQGLIFVVDSNDRDRVV---------EARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLH-  146 (181)
Q Consensus        83 ~----~~d~~i~v~d~~~~~s~~---------~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~-  146 (181)
                      .    .++++++|+|.++.....         .....+...+..   .++|+++|+||+|+.+..  ..+++.+.++.. 
T Consensus        85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~  161 (201)
T PRK04213         85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP  161 (201)
T ss_pred             HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence            3    467888899886432210         011112222222   479999999999986543  334555555542 


Q ss_pred             cccCcceEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192          147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       147 ~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      .++..+.+++++||++| |++++++++.+.+.+.
T Consensus       162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             cccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            12222346899999999 9999999999987653

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.93  E-value=1.8e-24  Score=148.09  Aligned_cols=154  Identities=23%  Similarity=0.213  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccc---cCccceeEEEEEE---CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      .|+++|++|+|||||+++|....+...   .++.......+..   .+..+.+|||||+..+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            589999999999999999998876543   2233333344444   3678999999999988888888889999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---hhCCCc--ccCcceEEEEccccCCCChH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD---KLGLHS--LRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~S~~~~~gv~  167 (181)
                      |+++....+.. ..+.. +..   .++|+++|+||+|+.... .+.+..   .+....  .....++++++|+++|.|++
T Consensus        82 d~~~~~~~~~~-~~~~~-~~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (168)
T cd01887          82 AADDGVMPQTI-EAIKL-AKA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID  155 (168)
T ss_pred             ECCCCccHHHH-HHHHH-HHH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence            99875432221 11222 222   468999999999987532 122221   111111  11235679999999999999


Q ss_pred             HHHHHHHHHhh
Q 030192          168 EGLDWLSNNIA  178 (181)
Q Consensus       168 ~~~~~i~~~~~  178 (181)
                      ++++++.+...
T Consensus       156 ~l~~~l~~~~~  166 (168)
T cd01887         156 DLLEAILLLAE  166 (168)
T ss_pred             HHHHHHHHhhh
Confidence            99999987654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=2.9e-24  Score=160.92  Aligned_cols=158  Identities=23%  Similarity=0.224  Sum_probs=112.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEE-CCEEEEEEEcCCCCC-------cccchhhcccccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEY-KNISFTVWDVGGQDK-------IRPLWRHYFQNTQ   86 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d   86 (181)
                      ..|+++|.||||||||++++.+.+.. ..  .+|.......+.. +..++.+||+||..+       ....+..+++.++
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~  238 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  238 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence            47999999999999999999986533 22  3455555666666 557899999999632       1122333456799


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCcccCcceEEEEccccCCC
Q 030192           87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~  164 (181)
                      ++++|+|+++.++++....|...+.... ...++|+++|+||+|+.+.....+ ..+..    .+..+++++++||+++.
T Consensus       239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~  314 (335)
T PRK12299        239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGE  314 (335)
T ss_pred             EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCC
Confidence            9999999998878877777666554432 234789999999999876432221 11111    11223578999999999


Q ss_pred             ChHHHHHHHHHHhhh
Q 030192          165 GLYEGLDWLSNNIAS  179 (181)
Q Consensus       165 gv~~~~~~i~~~~~~  179 (181)
                      |++++++++.+.+.+
T Consensus       315 GI~eL~~~L~~~l~~  329 (335)
T PRK12299        315 GLDELLRALWELLEE  329 (335)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999987754

>PRK15494 era GTPase Era; Provisional

Probab=99.92  E-value=6.9e-24  Score=159.72  Aligned_cols=157  Identities=15%  Similarity=0.222  Sum_probs=109.3

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccccc----CccceeEEEEEECCEEEEEEEcCCCCC-cccc-------hhhc
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYKNISFTVWDVGGQDK-IRPL-------WRHY   81 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~-------~~~~   81 (181)
                      +.+..+|+++|.+|+|||||+|+|.+..+....    +|.......+..++..+.+|||||..+ +..+       ...+
T Consensus        49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~  128 (339)
T PRK15494         49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS  128 (339)
T ss_pred             ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence            356679999999999999999999988765322    233333445666788999999999743 2222       1124


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcccc
Q 030192           82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT  161 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  161 (181)
                      +..+|++++|+|..+  ++.....++...+..   .+.|.++|+||+|+.+. ...++.+.+...   .....++++||+
T Consensus       129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAk  199 (339)
T PRK15494        129 LHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISAL  199 (339)
T ss_pred             hhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEecc
Confidence            678999999999754  444454555554443   34677889999998653 333444433211   112468999999


Q ss_pred             CCCChHHHHHHHHHHhhh
Q 030192          162 SGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~~~  179 (181)
                      +|.|++++++++.+.+.+
T Consensus       200 tg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        200 SGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             CccCHHHHHHHHHHhCCC
Confidence            999999999999987654

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.92  E-value=1.2e-23  Score=146.49  Aligned_cols=155  Identities=24%  Similarity=0.229  Sum_probs=112.9

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCccccc-------------------CccceeEEEEEECCEEEEEEEcCCCCCcccchh
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTI-------------------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR   79 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (181)
                      +|+++|.+|+|||||++++.+.......                   .+.......+......+.+||+||..++...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            4899999999999999999887654321                   122333444566788999999999998888888


Q ss_pred             hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCcc-------
Q 030192           80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSL-------  148 (181)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~----~~~~~~~~~~~-------  148 (181)
                      .+++.+|++++|+|+..+.+... ...+.. +..   .+.|+++++||+|+..+....    ++.+.+.....       
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~-~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRI-ARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG  155 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHH-HHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence            88999999999999987654322 222222 222   479999999999998643322    23333332211       


Q ss_pred             --cCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          149 --RQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       149 --~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                        .....+++++|+++|.|+++++.++.+.+.
T Consensus       156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence              235678999999999999999999998764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.92  E-value=1e-23  Score=142.27  Aligned_cols=152  Identities=22%  Similarity=0.296  Sum_probs=112.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE--EEECC--EEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+||+++|++|+|||||++++.+..+. ...++.+.....  +...+  +.+.+||+||+.++...+..+.++++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            379999999999999999999988854 334555544433  45556  7899999999999988888888999999999


Q ss_pred             EECCCc-ccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDR-DRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +|.... .++.... .+...+..... .+.|+++++||+|+......++....+...    ...+++++||++|.|++++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~sa~~~~gv~~~  155 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKL----NGEPIIPLSAETGKNIDSA  155 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhc----cCCceEEeecCCCCCHHHH
Confidence            998766 6665555 33333333222 378999999999997654333333333222    1235889999999999999


Q ss_pred             HHHH
Q 030192          170 LDWL  173 (181)
Q Consensus       170 ~~~i  173 (181)
                      ++++
T Consensus       156 ~~~l  159 (161)
T TIGR00231       156 FKIV  159 (161)
T ss_pred             HHHh
Confidence            9876

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.92  E-value=8.9e-24  Score=165.75  Aligned_cols=159  Identities=16%  Similarity=0.155  Sum_probs=109.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc--cccCccc--eeEEEEEECCEEEEEEEcCCCCC----------cccc-hhh
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDK----------IRPL-WRH   80 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~~~   80 (181)
                      ..++|+++|.+|+|||||+|+|++....  +..++++  .....+...+..+.+|||||..+          +... ...
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~  289 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA  289 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence            4589999999999999999999988753  3333322  22344566778899999999532          2111 123


Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      +++.+|++++|+|+++..+.+... ++.....    .++|+|+|+||+|+.+.....................+++++||
T Consensus       290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA  364 (472)
T PRK03003        290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA  364 (472)
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence            567899999999999887776553 3333332    47899999999999754322222222111111112346889999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030192          161 TSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~  179 (181)
                      ++|.|++++|+.+.+.+.+
T Consensus       365 k~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        365 KTGRAVDKLVPALETALES  383 (472)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999887643

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.92  E-value=2.2e-23  Score=140.96  Aligned_cols=143  Identities=21%  Similarity=0.202  Sum_probs=105.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc--------hhhccccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNT   85 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~   85 (181)
                      ++|+++|++|+|||||++++.+....  ...+  +.......+...+.++.+|||||..++...        ...++..+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   81 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA   81 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence            68999999999999999999987643  2222  222333445567789999999997655422        22356789


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      |++++|+|++++.+......+..       ..++|+++++||+|+.+....          .....+.+++++|++++.|
T Consensus        82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~  144 (157)
T cd04164          82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG  144 (157)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence            99999999998777665544332       257999999999998764332          1233455799999999999


Q ss_pred             hHHHHHHHHHHh
Q 030192          166 LYEGLDWLSNNI  177 (181)
Q Consensus       166 v~~~~~~i~~~~  177 (181)
                      ++++++++.+.+
T Consensus       145 v~~l~~~l~~~~  156 (157)
T cd04164         145 LDELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=7.4e-24  Score=155.43  Aligned_cols=151  Identities=18%  Similarity=0.136  Sum_probs=102.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccc--cC-ccceeEE-EEEECCEEEEEEEcCCCCCccc--------chhhcccccc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTT--IP-TIGFNVE-TVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQ   86 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~--~~-~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d   86 (181)
                      +|+++|.||+|||||+|+|.+.+....  .| |+..... .....+..+.+|||||......        ....+++.+|
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD   81 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD   81 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence            689999999999999999999876422  22 2222222 2234567899999999654321        1334568899


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh-CCCcccCcceEEEEccccCCCC
Q 030192           87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL-GLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      ++++|+|+++..+..   ..+...+..   .+.|+++|+||+|+.+.....+....+ ....    -.+++++||++|.|
T Consensus        82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~----~~~v~~iSA~~g~g  151 (270)
T TIGR00436        82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILED----FKDIVPISALTGDN  151 (270)
T ss_pred             EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcC----CCceEEEecCCCCC
Confidence            999999998766553   333344333   468999999999987533222211111 1111    11688999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030192          166 LYEGLDWLSNNIAS  179 (181)
Q Consensus       166 v~~~~~~i~~~~~~  179 (181)
                      ++++++.+.+.+.+
T Consensus       152 i~~L~~~l~~~l~~  165 (270)
T TIGR00436       152 TSFLAAFIEVHLPE  165 (270)
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999987754

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=1.2e-24  Score=145.13  Aligned_cols=134  Identities=19%  Similarity=0.208  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCC-----CcccchhhccccccEEEEEEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD-----KIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      ||+++|++|+|||||++++.+..+. ..+|.+..+     ..   .+|||||..     .+..... .++++|++++|+|
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~-----~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d   71 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEY-----ND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS   71 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc-cccceeEEE-----cC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence            7999999999999999999987652 334433322     22   789999972     2333323 4689999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      ++++.++.. . .|....      ..|+++|+||+|+.+.. ..++..+.....    ...+++++||++|.|++++|++
T Consensus        72 ~~~~~s~~~-~-~~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~  139 (142)
T TIGR02528        72 ATDPESRFP-P-GFASIF------VKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDEQGLEALVDY  139 (142)
T ss_pred             CCCCCcCCC-h-hHHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCCCCHHHHHHH
Confidence            999887644 2 233321      24899999999986532 222222211111    1126889999999999999998


Q ss_pred             HH
Q 030192          173 LS  174 (181)
Q Consensus       173 i~  174 (181)
                      +.
T Consensus       140 l~  141 (142)
T TIGR02528       140 LN  141 (142)
T ss_pred             Hh
Confidence            74

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=1.3e-23  Score=158.48  Aligned_cols=150  Identities=21%  Similarity=0.230  Sum_probs=107.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-c--ccCccceeEEEEEE-CCEEEEEEEcCCCCC---------cccchhhcc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEY-KNISFTVWDVGGQDK---------IRPLWRHYF   82 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~--~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~---------~~~~~~~~~   82 (181)
                      ..++|+++|.+|+|||||+|+|.+.... .  ..+|.+.....+.. .+..+.+|||+|..+         +...+ ..+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~  266 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV  266 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence            4589999999999999999999997643 2  24566666666666 567999999999722         22222 236


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      .++|++++|+|++++.+...... +..++......++|+++|+||+|+.+.......   ..      ...+++++||++
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~---~~------~~~~~i~iSAkt  336 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDEPRIERL---EE------GYPEAVFVSAKT  336 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCChHhHHHH---Hh------CCCCEEEEEccC
Confidence            78999999999998877655533 333344333357899999999998753222111   11      112478999999


Q ss_pred             CCChHHHHHHHHHH
Q 030192          163 GEGLYEGLDWLSNN  176 (181)
Q Consensus       163 ~~gv~~~~~~i~~~  176 (181)
                      |.|++++++.+.+.
T Consensus       337 g~GI~eL~~~I~~~  350 (351)
T TIGR03156       337 GEGLDLLLEAIAER  350 (351)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=4.7e-24  Score=147.01  Aligned_cols=152  Identities=22%  Similarity=0.198  Sum_probs=105.1

Q ss_pred             EEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEEC-CEEEEEEEcCCCCC----cccc---hhhccccccEEEE
Q 030192           22 MVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPL---WRHYFQNTQGLIF   90 (181)
Q Consensus        22 i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~---~~~~~~~~d~~i~   90 (181)
                      ++|++|||||||++++.+.... ..  .+|.......+... +..+.+|||||...    .+..   ....++.+|++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~   80 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH   80 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence            5899999999999999988641 11  23344444445566 78999999999632    2222   2334678999999


Q ss_pred             EEECCCc------ccHHHHHHHHHHHHcCCC------CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEc
Q 030192           91 VVDSNDR------DRVVEARDELHRMLNEDE------LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST  158 (181)
Q Consensus        91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      |+|++++      .++.....+...+.....      ..++|+++|+||+|+.......+..   ........+.+++++
T Consensus        81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~  157 (176)
T cd01881          81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI  157 (176)
T ss_pred             EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence            9999987      456666666655544322      1479999999999997654333321   111122234568899


Q ss_pred             cccCCCChHHHHHHHHHH
Q 030192          159 CATSGEGLYEGLDWLSNN  176 (181)
Q Consensus       159 S~~~~~gv~~~~~~i~~~  176 (181)
                      |++++.|++++++++...
T Consensus       158 Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         158 SAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             ehhhhcCHHHHHHHHHhh
Confidence            999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01894 EngA1 EngA1 subfamily

Probab=99.91  E-value=1.9e-23  Score=141.28  Aligned_cols=145  Identities=21%  Similarity=0.245  Sum_probs=100.9

Q ss_pred             EEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCccc--------chhhccccccEE
Q 030192           21 LMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQGL   88 (181)
Q Consensus        21 ~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d~~   88 (181)
                      +++|.+|+|||||++++.+....  +..+  |...........+..+.+|||||...+..        .+...++.+|++
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i   80 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI   80 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence            47899999999999999987532  2222  23334455666788999999999877543        334566789999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      ++|+|..+..+...  ..+...+..   .+.|+++++||+|+.+.....+....+..       .+++++|+++|.|+++
T Consensus        81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv~~  148 (157)
T cd01894          81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGF-------GEPIPISAEHGRGIGD  148 (157)
T ss_pred             EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCC-------CCeEEEecccCCCHHH
Confidence            99999976543322  223333333   36999999999999765332111111111       1478999999999999


Q ss_pred             HHHHHHHHh
Q 030192          169 GLDWLSNNI  177 (181)
Q Consensus       169 ~~~~i~~~~  177 (181)
                      +++++.+.+
T Consensus       149 l~~~l~~~~  157 (157)
T cd01894         149 LLDAILELL  157 (157)
T ss_pred             HHHHHHhhC
Confidence            999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=6.7e-24  Score=141.75  Aligned_cols=141  Identities=23%  Similarity=0.313  Sum_probs=101.0

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEECCEEEEEEEcCCCCCc------ccchhhcc--cccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI------RPLWRHYF--QNTQ   86 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~--~~~d   86 (181)
                      ++|+++|.||+|||||+|+|++.+.. ...|  |.......+...+..+.++|+||--..      ......++  .+.|
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D   80 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD   80 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence            58999999999999999999998854 3334  566666778888999999999993221      22233343  5899


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEccccC
Q 030192           87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      ++++|+|+++.   ++......++..    .++|+++++||+|.....    ..+.+.+.++.        +++.+||++
T Consensus        81 ~ii~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~  145 (156)
T PF02421_consen   81 LIIVVVDATNL---ERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSART  145 (156)
T ss_dssp             EEEEEEEGGGH---HHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTT
T ss_pred             EEEEECCCCCH---HHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCC
Confidence            99999999763   333333444443    479999999999987543    34566666654        699999999


Q ss_pred             CCChHHHHHHH
Q 030192          163 GEGLYEGLDWL  173 (181)
Q Consensus       163 ~~gv~~~~~~i  173 (181)
                      +.|++++++.|
T Consensus       146 ~~g~~~L~~~I  156 (156)
T PF02421_consen  146 GEGIDELKDAI  156 (156)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHhhC
Confidence            99999999865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PLN00023 GTP-binding protein; Provisional

Probab=99.91  E-value=1e-23  Score=155.05  Aligned_cols=123  Identities=21%  Similarity=0.377  Sum_probs=102.0

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE---------------CCEEEEEEEcCCCC
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---------------KNISFTVWDVGGQD   72 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~---------------~~~~~~i~D~~g~~   72 (181)
                      ..++...+||+++|+.|||||||+++|.++.+.. +.+|++..+.  .+..               ..+.+++||++|++
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            3456678999999999999999999999988764 4678876542  2332               24789999999999


Q ss_pred             CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCC-----------CCCCeEEEEEeCCCCCCC
Q 030192           73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-----------LRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piivv~nK~Dl~~~  133 (181)
                      +|..++..+++++|++|+|||+++++++..+..|+..+.....           ..++|+++|+||+|+.+.
T Consensus        95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023         95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence            9999999999999999999999999999999998887765421           135899999999999653

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.91  E-value=6e-23  Score=159.02  Aligned_cols=149  Identities=15%  Similarity=0.174  Sum_probs=108.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc--ccccCccc--eeEEEEEECCEEEEEEEcCCCCCcccc--------hhhcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF   82 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~   82 (181)
                      +..++|+++|++|+|||||+|+|.+...  .+..|.++  .....+...+..+.+|||||..++...        ...++
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~  280 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI  280 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence            5779999999999999999999998753  33344333  334456678889999999998655432        23567


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      +.+|++++|+|++++.+....  |+.....    .++|+++|+||+|+.+. ..+++..        ..+.+++++|+++
T Consensus       281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~--------~~~~~~~~vSak~  345 (442)
T TIGR00450       281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVS--------SKVLNSSNLSAKQ  345 (442)
T ss_pred             hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhh--------hcCCceEEEEEec
Confidence            889999999999988776554  4444322    46899999999998654 2222222        1233578999998


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030192          163 GEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~~~  179 (181)
                       .|++++++.+.+.+.+
T Consensus       346 -~gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       346 -LKIKALVDLLTQKINA  361 (442)
T ss_pred             -CCHHHHHHHHHHHHHH
Confidence             6999999998887754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=2.3e-23  Score=163.37  Aligned_cols=152  Identities=20%  Similarity=0.259  Sum_probs=106.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc--ccCcc--ceeEEEEEECCEEEEEEEcCCCCC--------cccchhhccc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTI--GFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ   83 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   83 (181)
                      ...+|+++|.+|+|||||+|++.+.....  ..|..  ......+...+..+.+|||||.+.        +...+..+++
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            34789999999999999999999876532  23322  223344556778899999999763        2334556778


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192           84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  163 (181)
                      .+|++++|+|+++..+...  ..+...+..   .++|+++|+||+|+.....  +........ +   + ..+++||++|
T Consensus       117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g-~---~-~~~~iSA~~g  184 (472)
T PRK03003        117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSLG-L---G-EPHPVSALHG  184 (472)
T ss_pred             hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhcC-C---C-CeEEEEcCCC
Confidence            9999999999988765432  333344433   4799999999999864321  111111111 1   1 2358999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030192          164 EGLYEGLDWLSNNIAS  179 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~~  179 (181)
                      .|++++++++.+.+.+
T Consensus       185 ~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        185 RGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCcHHHHHHHHhhccc
Confidence            9999999999988754

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=5.5e-24  Score=142.44  Aligned_cols=150  Identities=27%  Similarity=0.428  Sum_probs=112.6

Q ss_pred             EEcCCCCChHHHHhhHhcCCc-ccc-cCccceeEEEEEEC----CEEEEEEEcCCCCCcccchhhccccccEEEEEEECC
Q 030192           22 MVGLDAAGKTTILYKLKLGEI-VTT-IPTIGFNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        22 i~G~~~~GKSsli~~l~~~~~-~~~-~~~~~~~~~~~~~~----~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (181)
                      ++|++|+|||||++++.+... ... .++. .........    ...+.+||+||...+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998876 332 3333 444444333    678999999999888887788889999999999999


Q ss_pred             CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192           96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS  174 (181)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~  174 (181)
                      ++.+......++..........++|+++++||+|+..........  ..........++++++|++++.|++++++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            988888888774444444455789999999999987654333321  00111123456799999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=2.1e-23  Score=156.16  Aligned_cols=156  Identities=24%  Similarity=0.240  Sum_probs=109.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECC-EEEEEEEcCCCCCc----ccc---hhhcccccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKI----RPL---WRHYFQNTQ   86 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~----~~~---~~~~~~~~d   86 (181)
                      ..|+++|.||||||||++++.+.+.. ..  .+|...+...+...+ ..+.+||+||..+.    ..+   +..++..++
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad  237 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  237 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence            58999999999999999999987532 11  234445555566665 89999999996422    122   223345799


Q ss_pred             EEEEEEECCCc---ccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192           87 GLIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        87 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      ++++|+|+++.   ++++....|..++... ....++|+++|+||+|+.+....+++.+.+..    ..+.+++++||++
T Consensus       238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iSAkt  313 (329)
T TIGR02729       238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPISALT  313 (329)
T ss_pred             EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEEccC
Confidence            99999999876   5666666555544332 12347899999999999765433333333221    1235789999999


Q ss_pred             CCChHHHHHHHHHHh
Q 030192          163 GEGLYEGLDWLSNNI  177 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~  177 (181)
                      +.|++++++++.+.+
T Consensus       314 g~GI~eL~~~I~~~l  328 (329)
T TIGR02729       314 GEGLDELLYALAELL  328 (329)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=2.1e-23  Score=146.20  Aligned_cols=145  Identities=21%  Similarity=0.252  Sum_probs=100.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc--CCccccc-------------Cccc----eeEEEEEECCEEEEEEEcCCCCCcccch
Q 030192           18 MRILMVGLDAAGKTTILYKLKL--GEIVTTI-------------PTIG----FNVETVEYKNISFTVWDVGGQDKIRPLW   78 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~--~~~~~~~-------------~~~~----~~~~~~~~~~~~~~i~D~~g~~~~~~~~   78 (181)
                      .+|+++|++|+|||||+++|.+  +.+....             ++.+    .....+......+.+|||||++++...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            5899999999999999999987  3333211             1122    2234566788999999999999999999


Q ss_pred             hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhC-CC-cccCcce
Q 030192           79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLG-LH-SLRQRHW  153 (181)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~-~~-~~~~~~~  153 (181)
                      ..+++.+|++++|+|+++.. ......++.....    .++|+++++||+|+.+...   .+++...+. .. ...+.++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF  157 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence            99999999999999998632 2222333333322    4689999999999965322   222233221 11 1133467


Q ss_pred             EEEEccccCCCChH
Q 030192          154 YIQSTCATSGEGLY  167 (181)
Q Consensus       154 ~~~~~S~~~~~gv~  167 (181)
                      +++++||++|.|+.
T Consensus       158 ~iv~~Sa~~g~~~~  171 (194)
T cd01891         158 PVLYASAKNGWASL  171 (194)
T ss_pred             CEEEeehhcccccc
Confidence            89999999998764

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.91  E-value=5e-23  Score=160.34  Aligned_cols=158  Identities=18%  Similarity=0.174  Sum_probs=109.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccch-----------hh
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW-----------RH   80 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------~~   80 (181)
                      ..++|+++|.+|+|||||+|++.+....  ...+  |.......+...+..+.+|||||..+.....           ..
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~  250 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK  250 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence            4589999999999999999999987643  2222  2222234455677789999999976544321           23


Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcccCcceEEEEcc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTC  159 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      +++.+|++++|+|++++.+.+.. ..+.....    .++|+++|+||+|+. +....+++...+......-...+++++|
T Consensus       251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S  325 (429)
T TIGR03594       251 AIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS  325 (429)
T ss_pred             HHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence            56889999999999877665443 22222222    478999999999997 3222333333332221122346799999


Q ss_pred             ccCCCChHHHHHHHHHHhh
Q 030192          160 ATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       160 ~~~~~gv~~~~~~i~~~~~  178 (181)
                      |++|.|++++|+++.+...
T Consensus       326 A~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       326 ALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999988654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01889 SelB_euk SelB subfamily

Probab=99.91  E-value=2e-23  Score=146.06  Aligned_cols=156  Identities=21%  Similarity=0.122  Sum_probs=102.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC----Ccc----c--ccCccceeEEEEEE--------------CCEEEEEEEcCCCCC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG----EIV----T--TIPTIGFNVETVEY--------------KNISFTVWDVGGQDK   73 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~----~~~----~--~~~~~~~~~~~~~~--------------~~~~~~i~D~~g~~~   73 (181)
                      ++|+++|++|+|||||+++|...    .+.    +  ...|.+..+..+..              .+..+++|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    111    1  12344444333333              277999999999966


Q ss_pred             cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCc--
Q 030192           74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHS--  147 (181)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~--  147 (181)
                      +........+.+|++++|+|+.+.........+.  +...   .++|+++++||+|+.....    .+++.+.+....  
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~  155 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK  155 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            5444444456789999999998654433322222  1111   2579999999999875332    222222211110  


Q ss_pred             ccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       148 ~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ....+++++++||++|.|++++++++.+.+.
T Consensus       156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            1124568999999999999999999988763

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.91  E-value=4.7e-23  Score=160.31  Aligned_cols=146  Identities=21%  Similarity=0.286  Sum_probs=108.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc--ccccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc--------hhhcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF   82 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~   82 (181)
                      +..++|+++|.+|+|||||+|+|.+...  .+..+  |.......+...+..+.+|||||..++...        ...++
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            4568999999999999999999998764  23333  333444566678889999999998654332        23356


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      +.+|++++|+|++++.+..... .|..      ..++|+++|+||+|+.+.....           ...+.+++++|+++
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~-~l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt  354 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDE-ILEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT  354 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHH-HHHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence            8899999999999887766433 3332      2578999999999997543221           11234688999999


Q ss_pred             CCChHHHHHHHHHHhh
Q 030192          163 GEGLYEGLDWLSNNIA  178 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~~  178 (181)
                      |.|++++++++.+.+.
T Consensus       355 g~GI~~L~~~L~~~l~  370 (449)
T PRK05291        355 GEGIDELREAIKELAF  370 (449)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999988764

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=9e-23  Score=138.25  Aligned_cols=146  Identities=21%  Similarity=0.195  Sum_probs=102.0

Q ss_pred             EEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc------hhhccc--cccEEEE
Q 030192           22 MVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYFQ--NTQGLIF   90 (181)
Q Consensus        22 i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~--~~d~~i~   90 (181)
                      ++|++|+|||||++++.+.... ...+  |.......+...+..+.+|||||...+...      +..++.  .+|++++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~   80 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN   80 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence            5899999999999999987633 2233  444445566677789999999998766542      444554  8999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |+|+.+++..   ..++..+..    .++|+++++||+|+.+..........+    .+..+.+++++|+++|.|+++++
T Consensus        81 v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~iSa~~~~~~~~l~  149 (158)
T cd01879          81 VVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKL----SELLGVPVVPTSARKGEGIDELK  149 (158)
T ss_pred             EeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHH----HHhhCCCeEEEEccCCCCHHHHH
Confidence            9999875443   233333322    368999999999997643222111111    11123468899999999999999


Q ss_pred             HHHHHHhh
Q 030192          171 DWLSNNIA  178 (181)
Q Consensus       171 ~~i~~~~~  178 (181)
                      +++.+.+.
T Consensus       150 ~~l~~~~~  157 (158)
T cd01879         150 DAIAELAE  157 (158)
T ss_pred             HHHHHHhc
Confidence            99988754

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.90  E-value=4.6e-23  Score=147.02  Aligned_cols=163  Identities=28%  Similarity=0.377  Sum_probs=121.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEEEEE--C--CEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--K--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~--~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .++|+++|++|+|||||+++|.++.+... .++.+..+.....  .  .+.+.+|||+|+++++..+..++..++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999998854 5565544433222  2  57899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhh----------hCCCccc-CcceEEEEcc
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDK----------LGLHSLR-QRHWYIQSTC  159 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~----------~~~~~~~-~~~~~~~~~S  159 (181)
                      +|.++..+..+....|...+......+.|+++++||+|+....... .+.+.          ....... .....++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            9999877776666666666555443469999999999998753211 11111          0000001 1122378999


Q ss_pred             cc--CCCChHHHHHHHHHHhhh
Q 030192          160 AT--SGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       160 ~~--~~~gv~~~~~~i~~~~~~  179 (181)
                      ++  ++.+++++|..+...+.+
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~  186 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLE  186 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHH
Confidence            99  999999999999988753

>cd01895 EngA2 EngA2 subfamily

Probab=99.90  E-value=3.3e-22  Score=137.20  Aligned_cols=155  Identities=19%  Similarity=0.196  Sum_probs=103.6

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCccc-----------chhhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP-----------LWRHY   81 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~~~   81 (181)
                      .++|+++|++|+|||||++++.+....  ...+  +.......+...+..+.+||+||..+...           ....+
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~   81 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA   81 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence            578999999999999999999887632  2222  22222234555677899999999654311           01234


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEcc
Q 030192           82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTC  159 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      +..+|++++|+|++++.+.... ..+. ....   .+.|+++++||+|+.+.  ...+++........-.....+++++|
T Consensus        82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~-~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  156 (174)
T cd01895          82 IERADVVLLVIDATEGITEQDL-RIAG-LILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS  156 (174)
T ss_pred             HhhcCeEEEEEeCCCCcchhHH-HHHH-HHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence            5689999999999887665433 2222 2222   36899999999998765  23333333332211111235799999


Q ss_pred             ccCCCChHHHHHHHHHH
Q 030192          160 ATSGEGLYEGLDWLSNN  176 (181)
Q Consensus       160 ~~~~~gv~~~~~~i~~~  176 (181)
                      ++++.|++++++.+.+.
T Consensus       157 a~~~~~i~~~~~~l~~~  173 (174)
T cd01895         157 ALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccCCCCHHHHHHHHHHh
Confidence            99999999999988764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.90  E-value=1e-22  Score=143.49  Aligned_cols=157  Identities=27%  Similarity=0.402  Sum_probs=115.1

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE----CCEEEEEEEcCCCCCcccchhhccccc-cEEEEEEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNT-QGLIFVVD   93 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~d   93 (181)
                      +|+++|++|||||||+++|..+.+....+++......+..    .+..+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            6899999999999999999998876555554444433332    367899999999999998888889998 99999999


Q ss_pred             CCCc-ccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhC-------------C------------
Q 030192           94 SNDR-DRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLG-------------L------------  145 (181)
Q Consensus        94 ~~~~-~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~-------------~------------  145 (181)
                      +.+. .++.....++.+++....  ..++|+++++||+|+......+.+++.+.             +            
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~  161 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES  161 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence            9987 677777777776654322  25799999999999875433222221110             0            


Q ss_pred             -------C-ccc--CcceEEEEccccCCC-ChHHHHHHHHH
Q 030192          146 -------H-SLR--QRHWYIQSTCATSGE-GLYEGLDWLSN  175 (181)
Q Consensus       146 -------~-~~~--~~~~~~~~~S~~~~~-gv~~~~~~i~~  175 (181)
                             . .+.  ...+.+.++|++.+. |++...+|+.+
T Consensus       162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence                   0 011  246788999999876 68888888754

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.90  E-value=7.1e-23  Score=143.65  Aligned_cols=165  Identities=18%  Similarity=0.184  Sum_probs=105.9

Q ss_pred             HHhhhcccccEEEEEcCCCCChHHHHhhHhcCCc-ccccCccceeEE-EEEECCEEEEEEEcCCCC----------Cccc
Q 030192            9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQD----------KIRP   76 (181)
Q Consensus         9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~----------~~~~   76 (181)
                      +++.+.....+|+++|++|+|||||++++.+..+ ....++.+.+.. .....+..+.+|||||..          ++..
T Consensus        16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~   95 (196)
T PRK00454         16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQK   95 (196)
T ss_pred             HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence            3455667889999999999999999999998763 333444332221 111124789999999953          2223


Q ss_pred             chhhccc---cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce
Q 030192           77 LWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW  153 (181)
Q Consensus        77 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  153 (181)
                      ....+++   ..+++++|+|.+.+.+...  .++...+..   .+.|+++++||+|+.+....++....+. ..+.....
T Consensus        96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~-~~l~~~~~  169 (196)
T PRK00454         96 LIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVR-KALKFGDD  169 (196)
T ss_pred             HHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHH-HHHHhcCC
Confidence            3334444   3468888999876544322  222233332   4688999999999876433222221111 11111134


Q ss_pred             EEEEccccCCCChHHHHHHHHHHhhh
Q 030192          154 YIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       154 ~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      .++++|++++.|++++++.+.+.+.+
T Consensus       170 ~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        170 EVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            68899999999999999999988765

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=9.5e-23  Score=158.30  Aligned_cols=158  Identities=26%  Similarity=0.294  Sum_probs=109.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECCEEEEEEEcCCCCC----cccc---hhhcccccc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDK----IRPL---WRHYFQNTQ   86 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~d   86 (181)
                      ..+|+++|.||||||||+|+|.+.+.. ..  .+|...+...+...+..+.+||+||...    ...+   ...++..+|
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad  238 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA  238 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence            458999999999999999999987643 22  3455666667778888999999999532    1111   233457799


Q ss_pred             EEEEEEECCCc----ccHHHHHHHHHHHHcCC----------CCCCCeEEEEEeCCCCCCCCCHhHH-HhhhCCCcccCc
Q 030192           87 GLIFVVDSNDR----DRVVEARDELHRMLNED----------ELRDAVLLVFANKQDLPNAMNAAEI-TDKLGLHSLRQR  151 (181)
Q Consensus        87 ~~i~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~piivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~  151 (181)
                      ++++|+|+++.    +.+.....+..++....          ...++|+++|+||+|+.+.....+. ...+     ...
T Consensus       239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~  313 (500)
T PRK12296        239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EAR  313 (500)
T ss_pred             EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHc
Confidence            99999999753    34444433332332211          2346899999999999754332222 2121     223


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          152 HWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       152 ~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      +++++++||+++.|+++++.++.+.+.+
T Consensus       314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        314 GWPVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5689999999999999999999887753

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=4.8e-22  Score=153.23  Aligned_cols=153  Identities=17%  Similarity=0.221  Sum_probs=104.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECCE-EEEEEEcCCCCCc--ccch------hhccccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNI-SFTVWDVGGQDKI--RPLW------RHYFQNT   85 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~-~~~i~D~~g~~~~--~~~~------~~~~~~~   85 (181)
                      .+|+++|.+|+|||||+|+|.+.... ..  ..|.......+...+. .+.+|||+|..+.  ...+      ....+.+
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A  277 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA  277 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence            68999999999999999999987643 12  3455555555655544 8899999997332  1122      2235789


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceE-EEEccccCCC
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY-IQSTCATSGE  164 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~  164 (181)
                      |++++|+|++++.+...... +..++......++|+++|+||+|+.+... ...... .      .+.+ ++.+||++|.
T Consensus       278 DlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~------~~~~~~v~ISAktG~  348 (426)
T PRK11058        278 TLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-E------ENKPIRVWLSAQTGA  348 (426)
T ss_pred             CEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchh-HHHHHH-h------cCCCceEEEeCCCCC
Confidence            99999999998876655432 22233332224789999999999864321 111111 0      1112 4689999999


Q ss_pred             ChHHHHHHHHHHhhh
Q 030192          165 GLYEGLDWLSNNIAS  179 (181)
Q Consensus       165 gv~~~~~~i~~~~~~  179 (181)
                      |++++++++.+.+..
T Consensus       349 GIdeL~e~I~~~l~~  363 (426)
T PRK11058        349 GIPLLFQALTERLSG  363 (426)
T ss_pred             CHHHHHHHHHHHhhh
Confidence            999999999988753

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=4.9e-22  Score=152.46  Aligned_cols=153  Identities=25%  Similarity=0.279  Sum_probs=106.9

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEEC-CEEEEEEEcCCCCC----cccchhh---ccccccE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPLWRH---YFQNTQG   87 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~~~~---~~~~~d~   87 (181)
                      .|+++|.||||||||++++.+.+.. ..  .+|...+...+... ...+.+||+||...    ...+...   ++..+++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l  239 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV  239 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence            8999999999999999999987643 22  33555555555555 68899999999632    2222233   3456999


Q ss_pred             EEEEEECCCc---ccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccC
Q 030192           88 LIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      +++|+|+++.   ++++....+...+... ....++|+++|+||+|+.+.. ..+++.+.+.        .+++++||++
T Consensus       240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~t  311 (424)
T PRK12297        240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALT  311 (424)
T ss_pred             EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCC
Confidence            9999999864   5566555554444332 123478999999999985431 1223333322        3688999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030192          163 GEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~~~  179 (181)
                      +.|++++++++.+.+.+
T Consensus       312 geGI~eL~~~L~~~l~~  328 (424)
T PRK12297        312 GQGLDELLYAVAELLEE  328 (424)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999887754

>PTZ00099 rab6; Provisional

Probab=99.89  E-value=5.6e-23  Score=141.61  Aligned_cols=130  Identities=20%  Similarity=0.371  Sum_probs=102.0

Q ss_pred             cccCccceeEEE--E--EECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCC
Q 030192           44 TTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA  119 (181)
Q Consensus        44 ~~~~~~~~~~~~--~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  119 (181)
                      .+.||.+..+..  +  ....+.+.+|||+|++++...+..+++.+|++++|||++++++++....|+..+..... .++
T Consensus         8 ~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~   86 (176)
T PTZ00099          8 NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDV   86 (176)
T ss_pred             CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCC
Confidence            356788866643  2  23468999999999999999999999999999999999999999999888887766532 578


Q ss_pred             eEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          120 VLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       120 piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      |+++|+||+|+.+..  ..++...     ..+..++.++++||++|.|++++|.++.+.+.+
T Consensus        87 piilVgNK~DL~~~~~v~~~e~~~-----~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         87 IIALVGNKTDLGDLRKVTYEEGMQ-----KAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             eEEEEEECcccccccCCCHHHHHH-----HHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            999999999996432  2222211     122234568999999999999999999988765

>cd04163 Era Era subfamily

Probab=99.89  E-value=7.4e-22  Score=134.48  Aligned_cols=154  Identities=20%  Similarity=0.175  Sum_probs=103.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccccc---Ccc-ceeEEEEEECCEEEEEEEcCCCCCccc--------chhhccc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTI-GFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQ   83 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~---~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   83 (181)
                      +..+|+++|++|+|||||++++.+.......   ++. ......+...+..+.+|||||......        .....+.
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999987643211   111 112223444668899999999754332        2334567


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192           84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      .+|++++|+|++++.  .....++...+..   .+.|+++++||+|+.. .....+....+...   ....+++++|+++
T Consensus        82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~  153 (168)
T cd04163          82 DVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALK  153 (168)
T ss_pred             hCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEecc
Confidence            899999999998762  2233334344433   3689999999999873 33333333333221   1234688999999


Q ss_pred             CCChHHHHHHHHHHh
Q 030192          163 GEGLYEGLDWLSNNI  177 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~  177 (181)
                      +.|++++++.+.+.+
T Consensus       154 ~~~~~~l~~~l~~~~  168 (168)
T cd04163         154 GENVDELLEEIVKYL  168 (168)
T ss_pred             CCChHHHHHHHHhhC
Confidence            999999999987653

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.89  E-value=2.8e-22  Score=139.82  Aligned_cols=158  Identities=23%  Similarity=0.204  Sum_probs=112.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc---------------------cccCccceeEEEEE--ECCEEEEEEEcCCCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV---------------------TTIPTIGFNVETVE--YKNISFTVWDVGGQD   72 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~---------------------~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~   72 (181)
                      +.++|+++|+.++|||||+++|....-.                     ...-|.......+.  .....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            5689999999999999999999753210                     01224555666777  789999999999999


Q ss_pred             CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhh-CCCcc
Q 030192           73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKL-GLHSL  148 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~-~~~~~  148 (181)
                      +|.......+..+|++++|+|+.+.-.. ...+.+.....    .++|+++++||+|+....   ..+++...+ .....
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~  156 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGE  156 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhcccccc
Confidence            9988888888999999999999765332 22333333333    478899999999988321   122222222 11111


Q ss_pred             cC-cceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          149 RQ-RHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       149 ~~-~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      .. ..++++++||++|.|++++++.+.+.+.
T Consensus       157 ~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  157 NGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             CccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            22 3578999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.89  E-value=2.9e-24  Score=142.61  Aligned_cols=155  Identities=17%  Similarity=0.341  Sum_probs=130.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE----EEEECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +..+|++++|..++||||+|.+++.+-|.. +..+++..+.    .+..+++...+||++|+++|..+...|++.+.+.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            467899999999999999999999988874 4567776542    34557788999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  164 (181)
                      +||+.++..||+....|+..+..+.  ..+|.++|-||+|+.+.     .+.+-+...+++.        ++.+|++...
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~R--------lyRtSvked~  167 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKR--------LYRTSVKEDF  167 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhh--------hhhhhhhhhh
Confidence            9999999999999999999987754  47999999999999763     2344455555554        5579999999


Q ss_pred             ChHHHHHHHHHHhhh
Q 030192          165 GLYEGLDWLSNNIAS  179 (181)
Q Consensus       165 gv~~~~~~i~~~~~~  179 (181)
                      |+..+|.++..++..
T Consensus       168 NV~~vF~YLaeK~~q  182 (246)
T KOG4252|consen  168 NVMHVFAYLAEKLTQ  182 (246)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999999987754

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=1.9e-22  Score=136.79  Aligned_cols=141  Identities=21%  Similarity=0.202  Sum_probs=93.6

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCC----cccchhhccccccEEEEEEEC
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK----IRPLWRHYFQNTQGLIFVVDS   94 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~   94 (181)
                      +|+++|++|+|||||+|++.+.... ..++.+.     .....  .+|||||...    +.......++++|++++|+|+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~   74 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL-ARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA   74 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc-CccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence            7999999999999999998865421 1222222     22111  3799999632    222223346889999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192           95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS  174 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~  174 (181)
                      ++.++..  ..++... .    .++|+++++||+|+.+. ..+.+.+......   ...+++++||++|.|++++|+++.
T Consensus        75 ~~~~s~~--~~~~~~~-~----~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~---~~~p~~~~Sa~~g~gi~~l~~~l~  143 (158)
T PRK15467         75 NDPESRL--PAGLLDI-G----VSKRQIAVISKTDMPDA-DVAATRKLLLETG---FEEPIFELNSHDPQSVQQLVDYLA  143 (158)
T ss_pred             CCccccc--CHHHHhc-c----CCCCeEEEEEccccCcc-cHHHHHHHHHHcC---CCCCEEEEECCCccCHHHHHHHHH
Confidence            9876652  2233332 1    36789999999998653 2333332221111   114799999999999999999998


Q ss_pred             HHhh
Q 030192          175 NNIA  178 (181)
Q Consensus       175 ~~~~  178 (181)
                      +.+.
T Consensus       144 ~~~~  147 (158)
T PRK15467        144 SLTK  147 (158)
T ss_pred             Hhch
Confidence            8764

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.88  E-value=1.7e-22  Score=139.85  Aligned_cols=150  Identities=19%  Similarity=0.246  Sum_probs=96.6

Q ss_pred             HHhhhcccccEEEEEcCCCCChHHHHhhHhcCCc-ccccCccceeE--EEEEECCEEEEEEEcCCCCC----------cc
Q 030192            9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IR   75 (181)
Q Consensus         9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~----------~~   75 (181)
                      +.+.++.+..+|+++|++|+|||||+|++.+..+ ....++.+.+.  ..+... ..+.+|||||...          +.
T Consensus        10 ~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~   88 (179)
T TIGR03598        10 LKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQ   88 (179)
T ss_pred             HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHH
Confidence            3567778999999999999999999999998763 23333333221  112222 3699999999532          22


Q ss_pred             cchhhccc---cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcc
Q 030192           76 PLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSL  148 (181)
Q Consensus        76 ~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~  148 (181)
                      .....+++   .++++++|+|++++-+....  .+...+..   .++|+++++||+|+.++..    .+++...+...  
T Consensus        89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~--  161 (179)
T TIGR03598        89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD--  161 (179)
T ss_pred             HHHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc--
Confidence            22334444   46899999999865443333  22233333   4689999999999875422    22333333321  


Q ss_pred             cCcceEEEEccccCCCChH
Q 030192          149 RQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus       149 ~~~~~~~~~~S~~~~~gv~  167 (181)
                       ...+.++++||++|+|++
T Consensus       162 -~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       162 -ADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             -cCCCceEEEECCCCCCCC
Confidence             223479999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00089 era GTPase Era; Reviewed

Probab=99.88  E-value=1e-21  Score=145.82  Aligned_cols=156  Identities=20%  Similarity=0.238  Sum_probs=104.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccccc--C-ccceeEEE-EEECCEEEEEEEcCCCCCcc--------cchhhccc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI--P-TIGFNVET-VEYKNISFTVWDVGGQDKIR--------PLWRHYFQ   83 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--~-~~~~~~~~-~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~   83 (181)
                      +.-.|+++|++|||||||+|++.+.+.....  | |....... ...++..+.++||||.....        ......+.
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            4567999999999999999999998764322  2 22222222 23355799999999965432        22334567


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192           84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      .+|++++|+|+++.  +.....++...+..   .+.|+++|+||+|+... ....+..+.+...   .....++++||++
T Consensus        84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~  155 (292)
T PRK00089         84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK  155 (292)
T ss_pred             cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence            89999999999873  22333444444442   46899999999999732 2222222222211   0123688999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030192          163 GEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~~~  179 (181)
                      +.|++++++++.+.+.+
T Consensus       156 ~~gv~~L~~~L~~~l~~  172 (292)
T PRK00089        156 GDNVDELLDVIAKYLPE  172 (292)
T ss_pred             CCCHHHHHHHHHHhCCC
Confidence            99999999999887643

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.88  E-value=4.8e-22  Score=140.18  Aligned_cols=157  Identities=16%  Similarity=0.106  Sum_probs=100.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc---c---ccCccceeEEEEEE---------------------------CC----
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV---T---TIPTIGFNVETVEY---------------------------KN----   60 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~---~---~~~~~~~~~~~~~~---------------------------~~----   60 (181)
                      ++|+++|+.|+|||||+..+.+....   .   ...+....+..+..                           .+    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            47999999999999999999654211   0   01111111111111                           02    


Q ss_pred             --EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-
Q 030192           61 --ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-  137 (181)
Q Consensus        61 --~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-  137 (181)
                        ..+.+|||||++++...+...+..+|++++|+|++++.........+..+...   ...|+++++||+|+.+..... 
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~  157 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE  157 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence              67999999999988887777788899999999998632111112222222111   235799999999997532221 


Q ss_pred             ---HHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          138 ---EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       138 ---~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                         ++.+.+..  .....++++++||++|.|++++++.+.+.+.+
T Consensus       158 ~~~~i~~~~~~--~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         158 NYEQIKKFVKG--TIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHHhc--cccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence               22221111  11234578999999999999999999887654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=1.9e-21  Score=151.65  Aligned_cols=159  Identities=17%  Similarity=0.177  Sum_probs=108.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccCccce--eEEEEEECCEEEEEEEcCCCCCcccc-----------hh
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGF--NVETVEYKNISFTVWDVGGQDKIRPL-----------WR   79 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~   79 (181)
                      ...++|+++|.+|+|||||+|++++....  ...+....  ....+...+..+.+|||||..+....           ..
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            35699999999999999999999987643  22332222  22334567788999999996432221           12


Q ss_pred             hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcc
Q 030192           80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC  159 (181)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      .+++.+|++++|+|++++.+.+.. ..+ ..+..   .++|+++++||+|+.+....+++...+..........+++++|
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~-~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S  325 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDL-RIA-GLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS  325 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence            356789999999999887665443 222 22222   4689999999999975433334443332221122345799999


Q ss_pred             ccCCCChHHHHHHHHHHhh
Q 030192          160 ATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       160 ~~~~~gv~~~~~~i~~~~~  178 (181)
                      |++|.|++++++.+.+...
T Consensus       326 A~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        326 ALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999887554

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=6.9e-22  Score=158.02  Aligned_cols=153  Identities=18%  Similarity=0.228  Sum_probs=110.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCC-------ccc-ccC------ccceeE----EEEEE-----CCEEEEEEEcCCCCC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGE-------IVT-TIP------TIGFNV----ETVEY-----KNISFTVWDVGGQDK   73 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~-------~~~-~~~------~~~~~~----~~~~~-----~~~~~~i~D~~g~~~   73 (181)
                      ..+++++|+.++|||||+++|+...       +.. ...      ..++++    ..+.+     ..+.+++|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4589999999999999999998642       111 111      123222    22322     247899999999999


Q ss_pred             cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccC
Q 030192           74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQ  150 (181)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~  150 (181)
                      |...+..+++.+|++++|+|+++..+.+....|+... .    .++|+++++||+|+.+...   .+++.+.++..    
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~----  153 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD----  153 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC----
Confidence            9999999999999999999999876666555554333 2    3689999999999865321   12343333322    


Q ss_pred             cceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          151 RHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       151 ~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                       ...++++||++|.|++++|+.+.+.+..
T Consensus       154 -~~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       154 -ASEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             -cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence             1247899999999999999999887653

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd00880 Era_like Era (E

Probab=99.88  E-value=2e-21  Score=131.18  Aligned_cols=150  Identities=25%  Similarity=0.230  Sum_probs=104.5

Q ss_pred             EEcCCCCChHHHHhhHhcCCcccc--cC--ccceeEEEEEEC-CEEEEEEEcCCCCCccc-------chhhccccccEEE
Q 030192           22 MVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYK-NISFTVWDVGGQDKIRP-------LWRHYFQNTQGLI   89 (181)
Q Consensus        22 i~G~~~~GKSsli~~l~~~~~~~~--~~--~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~i   89 (181)
                      ++|++|||||||++++.+......  .+  +........... ...+.+||+||......       ....+++.+|+++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            589999999999999998765421  11  222222333333 67899999999766543       3344678899999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +|+|..+........ +......    .+.|+++++||+|+.......................+++++|++++.|++++
T Consensus        81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            999999877665554 2322222    57999999999998876544443221222223345668999999999999999


Q ss_pred             HHHHHHH
Q 030192          170 LDWLSNN  176 (181)
Q Consensus       170 ~~~i~~~  176 (181)
                      +.++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=1e-21  Score=152.97  Aligned_cols=148  Identities=22%  Similarity=0.281  Sum_probs=105.1

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCC--------Ccccchhhcccccc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNTQ   86 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~d   86 (181)
                      +|+++|.+|+|||||+|++.+....  ...|  |.......+...+..+.+|||||..        .+......+++.+|
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad   80 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD   80 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence            5899999999999999999987642  2333  3334455667788899999999963        23344566778999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      ++++|+|+.+..+.  ....+..+++.   .++|+++|+||+|+.+..........++..       +++++||++|.|+
T Consensus        81 ~vl~vvD~~~~~~~--~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~~-------~~~~vSa~~g~gv  148 (429)
T TIGR03594        81 VILFVVDGREGLTP--EDEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGFG-------EPIPISAEHGRGI  148 (429)
T ss_pred             EEEEEEeCCCCCCH--HHHHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCCC-------CeEEEeCCcCCCh
Confidence            99999999764332  22333444443   468999999999987543221111122221       4789999999999


Q ss_pred             HHHHHHHHHHhh
Q 030192          167 YEGLDWLSNNIA  178 (181)
Q Consensus       167 ~~~~~~i~~~~~  178 (181)
                      +++++.+.+.+.
T Consensus       149 ~~ll~~i~~~l~  160 (429)
T TIGR03594       149 GDLLDAILELLP  160 (429)
T ss_pred             HHHHHHHHHhcC
Confidence            999999988764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.88  E-value=1.2e-22  Score=131.51  Aligned_cols=109  Identities=25%  Similarity=0.452  Sum_probs=79.9

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc---cccC----ccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV---TTIP----TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~---~~~~----~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      ||+++|++|||||||+++|.+..+.   ...+    +.......+......+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988865   1111    22222222333444699999999998888877778999999999


Q ss_pred             EECCCcccHHHHHHH---HHHHHcCCCCCCCeEEEEEeCCC
Q 030192           92 VDSNDRDRVVEARDE---LHRMLNEDELRDAVLLVFANKQD  129 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~piivv~nK~D  129 (181)
                      ||++++++++.+.++   +..+...  ..++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            999999999887554   3333321  24699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=1.2e-21  Score=152.84  Aligned_cols=146  Identities=23%  Similarity=0.299  Sum_probs=102.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCC--------cccchhhccccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNT   85 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~~   85 (181)
                      .+|+++|.+|+|||||+|+|.+....  ...+  |.......+...+..+.+|||||...        +......++..+
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a   81 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA   81 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            58999999999999999999987742  2233  33344556677789999999999876        223345567899


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      |++++|+|+.+..+.  ...++..++..   .++|+++|+||+|+.+..  ....+..... +.    .++++||++|.|
T Consensus        82 d~il~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~lg-~~----~~~~iSa~~g~g  149 (435)
T PRK00093         82 DVILFVVDGRAGLTP--ADEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSLG-LG----EPYPISAEHGRG  149 (435)
T ss_pred             CEEEEEEECCCCCCH--HHHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhcC-CC----CCEEEEeeCCCC
Confidence            999999999765333  22233333333   378999999999975422  1222211111 10    367899999999


Q ss_pred             hHHHHHHHHH
Q 030192          166 LYEGLDWLSN  175 (181)
Q Consensus       166 v~~~~~~i~~  175 (181)
                      ++++++.+..
T Consensus       150 v~~l~~~I~~  159 (435)
T PRK00093        150 IGDLLDAILE  159 (435)
T ss_pred             HHHHHHHHHh
Confidence            9999999987

>COG1159 Era GTPase [General function prediction only]

Probab=99.88  E-value=4.9e-22  Score=142.71  Aligned_cols=157  Identities=18%  Similarity=0.189  Sum_probs=111.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccC-ccceeE-EEEEECCEEEEEEEcCCCCC--------cccchhhcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP-TIGFNV-ETVEYKNISFTVWDVGGQDK--------IRPLWRHYF   82 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~-~~~~~~-~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~   82 (181)
                      .+.-.|+++|.||+|||||+|++++.+..  +..| |+-... ..+..++..+.++||||--.        ..+.....+
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            45567999999999999999999999865  3322 322222 33455788999999999322        222344556


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEcccc
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCAT  161 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~  161 (181)
                      ..+|++++|+|++....  .-.+++.+.++.   .+.|+++++||+|...+.. ...+.+.+....-.   ..++++||+
T Consensus        84 ~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f---~~ivpiSA~  155 (298)
T COG1159          84 KDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPF---KEIVPISAL  155 (298)
T ss_pred             ccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCc---ceEEEeecc
Confidence            78999999999976433  345555555554   4689999999999887765 33333333222111   168999999


Q ss_pred             CCCChHHHHHHHHHHhhh
Q 030192          162 SGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~~~  179 (181)
                      +|.|++.+.+.+...+.+
T Consensus       156 ~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         156 KGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             ccCCHHHHHHHHHHhCCC
Confidence            999999999999988765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.88  E-value=2e-21  Score=158.91  Aligned_cols=159  Identities=16%  Similarity=0.148  Sum_probs=109.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCC----------cccc-hhh
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRPL-WRH   80 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~~~   80 (181)
                      ..++|+++|.+|+|||||+|++.+....  +..+  |.......+...+..+.+|||||..+          +... ...
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~  528 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA  528 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence            3589999999999999999999988742  3333  22232334556777889999999532          1111 123


Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      +++.+|++++|+|+++..+.+... .+.....    .++|+++|+||+|+.+....+.+...+..........+++.+||
T Consensus       529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA  603 (712)
T PRK09518        529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA  603 (712)
T ss_pred             HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence            467899999999999887776553 3333333    47899999999999764333333332221111112235788999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030192          161 TSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~  179 (181)
                      ++|.|++++++.+.+.+.+
T Consensus       604 ktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        604 KTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999887754

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.88  E-value=3.2e-21  Score=153.65  Aligned_cols=155  Identities=19%  Similarity=0.239  Sum_probs=109.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cC--ccceeEEEEEECCE-EEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~--~~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      .+..+|+++|++++|||||++++.+..+... .+  |.......+...+. .+.+|||||++.|..++...++.+|++++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            4678999999999999999999998776532 22  33333344555444 89999999999999998888899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc--c--CcceEEEEccccCCCCh
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL--R--QRHWYIQSTCATSGEGL  166 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~S~~~~~gv  166 (181)
                      |+|+++....+.. +.+...    ...++|+++++||+|+.+. ..+++...+....+  .  ....+++++||++|.|+
T Consensus       165 VVda~dgv~~qT~-e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI  238 (587)
T TIGR00487       165 VVAADDGVMPQTI-EAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI  238 (587)
T ss_pred             EEECCCCCCHhHH-HHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence            9999864322222 222222    1247899999999998643 22333332211111  1  12357899999999999


Q ss_pred             HHHHHHHHH
Q 030192          167 YEGLDWLSN  175 (181)
Q Consensus       167 ~~~~~~i~~  175 (181)
                      +++++++..
T Consensus       239 ~eLl~~I~~  247 (587)
T TIGR00487       239 DELLDMILL  247 (587)
T ss_pred             HHHHHhhhh
Confidence            999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.87  E-value=2.6e-21  Score=158.32  Aligned_cols=153  Identities=20%  Similarity=0.231  Sum_probs=104.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccCcccee----EEEEEECCEEEEEEEcCCCCC--------cccchhhcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDK--------IRPLWRHYF   82 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~   82 (181)
                      ....+|+++|.+|+|||||+|++.+.......++.+.+    .......+..+.+|||||.+.        +......++
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            34578999999999999999999987643222222222    233455678999999999753        223345567


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      +.+|++++|+|+++.  +......+...+..   .++|+++|+||+|+.+...  .......+. +   + ..+++||++
T Consensus       353 ~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg-~---~-~~~~iSA~~  420 (712)
T PRK09518        353 SLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLG-L---G-EPYPISAMH  420 (712)
T ss_pred             HhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcC-C---C-CeEEEECCC
Confidence            899999999999753  33334444444443   5799999999999864321  111111111 1   1 246899999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030192          163 GEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~~~  179 (181)
                      |.|++++++++.+.+.+
T Consensus       421 g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        421 GRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCchHHHHHHHHhccc
Confidence            99999999999987754

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.87  E-value=1.2e-21  Score=147.89  Aligned_cols=148  Identities=24%  Similarity=0.285  Sum_probs=112.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCcc---------cchhhcccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQN   84 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~   84 (181)
                      ..|+++|.||+|||||.|+|.+.+..  +..|  |....+....+.+.+|.++||+|-+...         ......+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            57999999999999999999998754  4444  5556677788889999999999965322         234556678


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  164 (181)
                      +|+++||+|.  .+.....++.+..+++.   .++|+++|+||+|....+.....-..+++.       ..+.+||-+|.
T Consensus        84 ADvilfvVD~--~~Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~  151 (444)
T COG1160          84 ADVILFVVDG--REGITPADEEIAKILRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGR  151 (444)
T ss_pred             CCEEEEEEeC--CCCCCHHHHHHHHHHHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhcc
Confidence            9999999999  44455666777777774   579999999999976432222222223333       46789999999


Q ss_pred             ChHHHHHHHHHHh
Q 030192          165 GLYEGLDWLSNNI  177 (181)
Q Consensus       165 gv~~~~~~i~~~~  177 (181)
                      |+.++++.+...+
T Consensus       152 Gi~dLld~v~~~l  164 (444)
T COG1160         152 GIGDLLDAVLELL  164 (444)
T ss_pred             CHHHHHHHHHhhc
Confidence            9999999999886

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.87  E-value=7.9e-21  Score=154.86  Aligned_cols=156  Identities=19%  Similarity=0.204  Sum_probs=111.1

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcccc-cC--ccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ..+...|+++|+.++|||||+++|.+..+... .+  |.......+...+..+.+|||||++.|..++..+++.+|++++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            35778999999999999999999987765432 11  2333334566677899999999999999999888899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC-c-cc--CcceEEEEccccCCCCh
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-S-LR--QRHWYIQSTCATSGEGL  166 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~S~~~~~gv  166 (181)
                      |+|+++...-+. ...+...    ...++|+|+++||+|+.+. ..+++...+... . ..  ...++++++||++|.|+
T Consensus       367 VVdAddGv~~qT-~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI  440 (787)
T PRK05306        367 VVAADDGVMPQT-IEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI  440 (787)
T ss_pred             EEECCCCCCHhH-HHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence            999986432222 1222222    1257899999999999653 222332222111 1 11  12468999999999999


Q ss_pred             HHHHHHHHH
Q 030192          167 YEGLDWLSN  175 (181)
Q Consensus       167 ~~~~~~i~~  175 (181)
                      +++++.+..
T Consensus       441 ~eLle~I~~  449 (787)
T PRK05306        441 DELLEAILL  449 (787)
T ss_pred             hHHHHhhhh
Confidence            999999874

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=5.4e-21  Score=145.95  Aligned_cols=159  Identities=21%  Similarity=0.163  Sum_probs=106.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECC-EEEEEEEcCCCCCcc-------cchhhccccccE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKIR-------PLWRHYFQNTQG   87 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~-------~~~~~~~~~~d~   87 (181)
                      .|+|+|.||||||||+|++.+.+.. +.  ..|.......+...+ ..+.++||||..+..       .....++..+|+
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv  240 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV  240 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence            7999999999999999999987643 22  234445555566654 569999999964321       112234678999


Q ss_pred             EEEEEECC---CcccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192           88 LIFVVDSN---DRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
Q Consensus        88 ~i~v~d~~---~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  163 (181)
                      +++|+|++   ..+.+.....+...+... ....++|+++|+||+|+.......+..+.+...  .....+++.+||+++
T Consensus       241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAASG  318 (390)
T ss_pred             EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCCC
Confidence            99999987   344555555555444432 122468999999999987543333222222110  011125789999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030192          164 EGLYEGLDWLSNNIAS  179 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~~  179 (181)
                      .|++++++.+.+.+.+
T Consensus       319 ~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        319 LGVKELCWDLMTFIEE  334 (390)
T ss_pred             cCHHHHHHHHHHHhhh
Confidence            9999999999988754

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.86  E-value=8e-21  Score=151.80  Aligned_cols=155  Identities=21%  Similarity=0.162  Sum_probs=107.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCC---cc-ccc--CccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGE---IV-TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~---~~-~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +.|+++|++++|||||+++|.+..   +. +..  .|....+..+...+..+.+||+||+++|......++.++|++++|
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV   80 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV   80 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence            478999999999999999998743   22 122  244444555666778999999999999988888888999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHhH----HHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      +|+++....+ ..+.+ .++..   .++| +++++||+|+.+....+.    +...+....+ ..+++++++|+++|.|+
T Consensus        81 VDa~~G~~~q-T~ehl-~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG~GI  154 (581)
T TIGR00475        81 VDADEGVMTQ-TGEHL-AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTGQGI  154 (581)
T ss_pred             EECCCCCcHH-HHHHH-HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCCCCc
Confidence            9998732111 11111 12222   3566 999999999976432222    2221111111 12468999999999999


Q ss_pred             HHHHHHHHHHhh
Q 030192          167 YEGLDWLSNNIA  178 (181)
Q Consensus       167 ~~~~~~i~~~~~  178 (181)
                      ++++..+...+.
T Consensus       155 ~eL~~~L~~l~~  166 (581)
T TIGR00475       155 GELKKELKNLLE  166 (581)
T ss_pred             hhHHHHHHHHHH
Confidence            999998877654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.86  E-value=7.3e-21  Score=147.81  Aligned_cols=154  Identities=18%  Similarity=0.173  Sum_probs=102.6

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcc----------------------------------cccCccceeEEEEEEC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV----------------------------------TTIPTIGFNVETVEYK   59 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~----------------------------------~~~~~~~~~~~~~~~~   59 (181)
                      .+..++|+++|++++|||||+++|+...-.                                  ....|.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            467899999999999999999999742100                                  0112444555567778


Q ss_pred             CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----
Q 030192           60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----  135 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----  135 (181)
                      ++.+.+|||||++++.......+..+|++++|+|+++..+......+...+....  ...|+++++||+|+.+...    
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence            8999999999998887665566788999999999986322222222222232221  2257999999999975211    


Q ss_pred             --HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192          136 --AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus       136 --~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                        .+++...+....+....++++++||++|.|+++.
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK  196 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence              1223332222222223468999999999999874

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=2e-20  Score=151.35  Aligned_cols=156  Identities=19%  Similarity=0.217  Sum_probs=109.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc-c--CccceeEEE--EEE--CCEEEEEEEcCCCCCcccchhhccccccE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~--~~~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .+...|+++|++++|||||+++|.+..+... .  .|.......  +..  .+..+.+|||||++.|...+..+++.+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            5778999999999999999999987765422 1  222222222  222  45899999999999999999889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--cc--CcceEEEEccccCC
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--LR--QRHWYIQSTCATSG  163 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~S~~~~  163 (181)
                      +++|+|+++....+.. +.+... .   ..++|+|+++||+|+.+. ..+++.+.+....  ..  ...++++++||++|
T Consensus       322 aILVVDA~dGv~~QT~-E~I~~~-k---~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG  395 (742)
T CHL00189        322 AILIIAADDGVKPQTI-EAINYI-Q---AANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG  395 (742)
T ss_pred             EEEEEECcCCCChhhH-HHHHHH-H---hcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence            9999999864332222 222222 1   257899999999998753 2333333322110  11  12368999999999


Q ss_pred             CChHHHHHHHHHH
Q 030192          164 EGLYEGLDWLSNN  176 (181)
Q Consensus       164 ~gv~~~~~~i~~~  176 (181)
                      .|++++++.+...
T Consensus       396 ~GIdeLle~I~~l  408 (742)
T CHL00189        396 TNIDKLLETILLL  408 (742)
T ss_pred             CCHHHHHHhhhhh
Confidence            9999999998764

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.86  E-value=3.4e-20  Score=133.10  Aligned_cols=149  Identities=21%  Similarity=0.180  Sum_probs=101.1

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECCEEEEEEEcCCCCCcc-------cchhhccccccEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL   88 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d~~   88 (181)
                      +|+++|++|+|||||++++.+.... ..  .+|.......+...+..+++||+||..+..       .....+++++|++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i   81 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI   81 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence            6899999999999999999987632 21  334445555667788999999999974332       1234567899999


Q ss_pred             EEEEECCCccc-HHHHHHHHH----------------------------------------HHHcCC-------------
Q 030192           89 IFVVDSNDRDR-VVEARDELH----------------------------------------RMLNED-------------  114 (181)
Q Consensus        89 i~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~-------------  114 (181)
                      ++|+|++++.. ...+...+.                                        .++++.             
T Consensus        82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~  161 (233)
T cd01896          82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI  161 (233)
T ss_pred             EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence            99999987542 222211111                                        111110             


Q ss_pred             -----------CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          115 -----------ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       115 -----------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                                 ....+|+++|+||+|+....+.+.+..        .  ..++++||++|.|++++++.+.+.+
T Consensus       162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~--------~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLAR--------Q--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhc--------C--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       112368999999999875432222111        1  1477899999999999999998865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.86  E-value=4.9e-20  Score=139.61  Aligned_cols=151  Identities=19%  Similarity=0.244  Sum_probs=110.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc--------hhhcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF   82 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~   82 (181)
                      +..++++++|.||+|||||+|.|.+....  +..|  |-......++..++++.+.||+|-.+....        ....+
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            57899999999999999999999998743  5555  444556678889999999999996543322        23345


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      +++|.+++|+|.+.+.+-.....  .....    .++|+++|.||.|+......... ...       .+.+++.+|+++
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~~~--~~~~~----~~~~~i~v~NK~DL~~~~~~~~~-~~~-------~~~~~i~iSa~t  360 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDLAL--IELLP----KKKPIIVVLNKADLVSKIELESE-KLA-------NGDAIISISAKT  360 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhHHH--HHhcc----cCCCEEEEEechhcccccccchh-hcc-------CCCceEEEEecC
Confidence            78999999999987633222222  22222    57999999999999876543333 111       122578999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030192          163 GEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~~~  179 (181)
                      |+|++.+.+.+.+.+..
T Consensus       361 ~~Gl~~L~~~i~~~~~~  377 (454)
T COG0486         361 GEGLDALREAIKQLFGK  377 (454)
T ss_pred             ccCHHHHHHHHHHHHhh
Confidence            99999999998876643

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.85  E-value=3.7e-20  Score=148.31  Aligned_cols=155  Identities=21%  Similarity=0.221  Sum_probs=109.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC--cc---------cc-------cCccceeEEEEEE-----CCEEEEEEEcCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV---------TT-------IPTIGFNVETVEY-----KNISFTVWDVGGQ   71 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~---------~~-------~~~~~~~~~~~~~-----~~~~~~i~D~~g~   71 (181)
                      ++..+++++|+.++|||||+++|+...  +.         ..       ..|.......+.+     .++.+++|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            355699999999999999999997531  10         00       1122222223322     3689999999999


Q ss_pred             CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcc
Q 030192           72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL  148 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~  148 (181)
                      .+|...+..+++.+|++++|+|+++....+....|.. ...    .++|+++|+||+|+.+...   .+++...++..  
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~--  157 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID--  157 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC--
Confidence            9999999999999999999999987655554444332 222    3689999999999865321   12333333322  


Q ss_pred             cCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       149 ~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                         ...++++||++|.|++++++.+.+.+..
T Consensus       158 ---~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        158 ---ASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             ---cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence               1247899999999999999999887653

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.85  E-value=4.2e-20  Score=123.67  Aligned_cols=157  Identities=25%  Similarity=0.338  Sum_probs=124.9

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCccc---------c-c---CccceeEEEEEECC-EEEEEEEcCCCCCcccch
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------T-I---PTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW   78 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---------~-~---~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~   78 (181)
                      .+....||++.|+.++||||+++++.......         . .   .|..+.+......+ ..+.+++||||++|...|
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence            34567899999999999999999998776321         1 1   34455555555544 899999999999999999


Q ss_pred             hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEc
Q 030192           79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST  158 (181)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      ..+++.+.++++++|.+.+..+ .... +.+++.+..  .+|+++.+||.|+.+....+++.+.+....   ...++++.
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~  158 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEI  158 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HHHH-HHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeee
Confidence            9999999999999999998777 3333 334444321  299999999999999988988888887663   35589999


Q ss_pred             cccCCCChHHHHHHHHHH
Q 030192          159 CATSGEGLYEGLDWLSNN  176 (181)
Q Consensus       159 S~~~~~gv~~~~~~i~~~  176 (181)
                      ++.++++..+.++.+...
T Consensus       159 ~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         159 DATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ecccchhHHHHHHHHHhh
Confidence            999999999999887765

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.85  E-value=2.3e-20  Score=127.49  Aligned_cols=161  Identities=17%  Similarity=0.241  Sum_probs=112.0

Q ss_pred             HHhhhcccccEEEEEcCCCCChHHHHhhHhcCC-cccccCccc----eeEEEEEECCEEEEEEEcCCC----------CC
Q 030192            9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG----FNVETVEYKNISFTVWDVGGQ----------DK   73 (181)
Q Consensus         9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~-~~~~~~~~~----~~~~~~~~~~~~~~i~D~~g~----------~~   73 (181)
                      ..+.++.....|+++|.+|+|||||||++++.+ ......|.|    +++..+...   +.++|.||.          +.
T Consensus        16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~   92 (200)
T COG0218          16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEK   92 (200)
T ss_pred             HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHH
Confidence            456777888999999999999999999999966 333444444    344444333   899999993          33


Q ss_pred             cccchhhccc---cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCC
Q 030192           74 IRPLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLH  146 (181)
Q Consensus        74 ~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~~~~~~~~~  146 (181)
                      +.+....|++   +-.++++++|+.  ......+..+.+++.+   .++|+++++||+|.....+.    ..+.+.+...
T Consensus        93 w~~~i~~YL~~R~~L~~vvlliD~r--~~~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~  167 (200)
T COG0218          93 WKKLIEEYLEKRANLKGVVLLIDAR--HPPKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP  167 (200)
T ss_pred             HHHHHHHHHhhchhheEEEEEEECC--CCCcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence            4455566665   367788889984  4445555566666665   68999999999998764322    3444444433


Q ss_pred             cccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       147 ~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      ..-  ...++..|+.++.|++++...|.+.+.+
T Consensus       168 ~~~--~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         168 PPD--DQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             CCc--cceEEEEecccccCHHHHHHHHHHHhhc
Confidence            221  1116678999999999999999887754

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.85  E-value=5.2e-21  Score=124.29  Aligned_cols=165  Identities=15%  Similarity=0.240  Sum_probs=127.7

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE----EEEEECCEEEEEEEcCCCCCcccchhhccccccE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .+.-.+||.++|++..|||||+-.+.++.+. +...+.|.++    ..+.+.++.+.+||.+|++++....+..+..+-+
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva   95 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA   95 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence            4456789999999999999999999999886 3355666654    2345567899999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      ++++||++.++++....+|+.+....+.  ...-|+|+||.|+.-..  +.++--.......++-.+.+.|.||+..+.|
T Consensus        96 IlFmFDLt~r~TLnSi~~WY~QAr~~Nk--tAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN  173 (205)
T KOG1673|consen   96 ILFMFDLTRRSTLNSIKEWYRQARGLNK--TAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN  173 (205)
T ss_pred             EEEEEecCchHHHHHHHHHHHHHhccCC--ccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence            9999999999999999999998877543  33447899999975322  2222111122233344555788899999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030192          166 LYEGLDWLSNNIAS  179 (181)
Q Consensus       166 v~~~~~~i~~~~~~  179 (181)
                      ++.+|..+..++.+
T Consensus       174 v~KIFK~vlAklFn  187 (205)
T KOG1673|consen  174 VQKIFKIVLAKLFN  187 (205)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999998887754

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.84  E-value=1.4e-20  Score=146.27  Aligned_cols=153  Identities=18%  Similarity=0.118  Sum_probs=101.0

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcC--Ccc-------------------------c-------ccCccceeEEEEEEC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLG--EIV-------------------------T-------TIPTIGFNVETVEYK   59 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~-------------------------~-------~~~~~~~~~~~~~~~   59 (181)
                      .+..++|+++|+.++|||||+++|+..  ...                         +       ...|.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            456789999999999999999999752  111                         0       011333444556667


Q ss_pred             CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 030192           60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN--A  136 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~  136 (181)
                      +..+.+||+||+++|.......+..+|++++|+|+++.++.... ......+....  ...|+++++||+|+.+...  .
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence            89999999999988877666677899999999999876432111 11111122221  2368999999999974211  1


Q ss_pred             ----hHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192          137 ----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus       137 ----~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                          +++...+....+....++++++||++|.|+++
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence                12222222222223356899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=1.1e-19  Score=137.40  Aligned_cols=158  Identities=17%  Similarity=0.203  Sum_probs=113.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc--ccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc-----------hhh
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WRH   80 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~   80 (181)
                      ..++|+++|.||+|||||+|+++++...-  ..+  |.......++.++.++.++||+|..+-.+.           ...
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~  256 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK  256 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence            46999999999999999999999988553  333  334444566778999999999994332111           233


Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQST  158 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      ....+|.+++|+|++.+  +......+...+.+   .+.++++++||+|+.+.  ...++....+...+..-...+++.+
T Consensus       257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            34679999999999755  44555555555555   68999999999998775  3444444444332222233478899


Q ss_pred             cccCCCChHHHHHHHHHHhh
Q 030192          159 CATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       159 S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ||++|.|++++|+.+.....
T Consensus       332 SA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         332 SALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             EecCCCChHHHHHHHHHHHH
Confidence            99999999999999877543

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.84  E-value=1.1e-19  Score=130.62  Aligned_cols=155  Identities=20%  Similarity=0.189  Sum_probs=109.4

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCc--------------ccc-------cCccceeEEEEEECCEEEEEEEcCCCCCcccc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEI--------------VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL   77 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~--------------~~~-------~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (181)
                      +|+++|++|+|||||+++++...-              .+.       ..+.......+.+.+..+++|||||+.++...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            589999999999999999975310              000       11233345567788999999999999999988


Q ss_pred             hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhC----------
Q 030192           78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLG----------  144 (181)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~----------  144 (181)
                      +..+++.+|++++|+|+++.... ....+|.....    .++|+++++||+|+....   ..+++...+.          
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~  155 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG  155 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence            88899999999999999875443 33344443332    478999999999986421   1111111111          


Q ss_pred             ----------------------------------------------CCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          145 ----------------------------------------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       145 ----------------------------------------------~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                                                                    .......-+|++..||.++.|++.+++.+.+.+.
T Consensus       156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p  235 (237)
T cd04168         156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP  235 (237)
T ss_pred             EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence                                                          0011234578999999999999999999988764

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.84  E-value=1.2e-19  Score=117.63  Aligned_cols=162  Identities=22%  Similarity=0.309  Sum_probs=124.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc---cccCccceeEEE-EEE---CCEEEEEEEcCCCCCc-ccchhhcccccc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVET-VEY---KNISFTVWDVGGQDKI-RPLWRHYFQNTQ   86 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~-~~~---~~~~~~i~D~~g~~~~-~~~~~~~~~~~d   86 (181)
                      -+..+|+++|..++|||++++++..+...   +..||++..+.. ++.   ....+.++||.|-..+ ..+..+|++-+|
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            46789999999999999999999866533   346677655432 322   3457999999997776 566788999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      ++++||+..+++||+.....-..+-+......+||++++||+|..++.+...   ...-.+++...+..+++++.++..+
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~---d~A~~Wa~rEkvkl~eVta~dR~sL  163 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDM---DVAQIWAKREKVKLWEVTAMDRPSL  163 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCH---HHHHHHHhhhheeEEEEEeccchhh
Confidence            9999999999999988877666666676667799999999999986643322   1122233445567889999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030192          167 YEGLDWLSNNIAS  179 (181)
Q Consensus       167 ~~~~~~i~~~~~~  179 (181)
                      -+-|.++...+..
T Consensus       164 ~epf~~l~~rl~~  176 (198)
T KOG3883|consen  164 YEPFTYLASRLHQ  176 (198)
T ss_pred             hhHHHHHHHhccC
Confidence            9999999877643

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.84  E-value=2.6e-20  Score=121.95  Aligned_cols=135  Identities=24%  Similarity=0.307  Sum_probs=95.7

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCC----CCcccchhhccccccEEEEEEEC
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRHYFQNTQGLIFVVDS   94 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~d~~i~v~d~   94 (181)
                      ||+++|+.|||||||+++|.+.... +..|..+     .+.+   .++||||.    ..+.+........+|.+++|.|+
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~-~~KTq~i-----~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da   73 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR-YKKTQAI-----EYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA   73 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC-cCcccee-----Eecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence            7999999999999999999987652 3333322     2222   56999993    34455455555789999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHH
Q 030192           95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL  173 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i  173 (181)
                      +++.+.  ....+...      .++|+|-|+||+|+. +....+...+.+.....+    .+|++|+.+|+|++++.++|
T Consensus        74 t~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L  141 (143)
T PF10662_consen   74 TEPRSV--FPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYL  141 (143)
T ss_pred             CCCCcc--CCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHH
Confidence            876442  11112222      358999999999998 444555555555555444    36899999999999999987


Q ss_pred             H
Q 030192          174 S  174 (181)
Q Consensus       174 ~  174 (181)
                      -
T Consensus       142 ~  142 (143)
T PF10662_consen  142 E  142 (143)
T ss_pred             h
Confidence            4

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.84  E-value=9e-20  Score=145.98  Aligned_cols=139  Identities=18%  Similarity=0.247  Sum_probs=98.3

Q ss_pred             cCCCCChHHHHhhHhcCCcc-cccCccc--eeEEEEEECCEEEEEEEcCCCCCcccc------hhhcc--ccccEEEEEE
Q 030192           24 GLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--QNTQGLIFVV   92 (181)
Q Consensus        24 G~~~~GKSsli~~l~~~~~~-~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~v~   92 (181)
                      |.+|+|||||+|++.+.... ...|+.+  .....+..++.++++|||||+.++...      ...++  +.+|++++|+
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv   80 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV   80 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence            89999999999999987753 3344333  333456667888999999998776543      23332  3699999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |+++.+.   ...+..+...    .++|+++++||+|+.+...    .+++.+.+        +.+++++||++|.|+++
T Consensus        81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l--------g~pvv~tSA~tg~Gi~e  145 (591)
T TIGR00437        81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL--------GVPVVPTSATEGRGIER  145 (591)
T ss_pred             cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc--------CCCEEEEECCCCCCHHH
Confidence            9987533   2233333332    4799999999999865332    22333333        34689999999999999


Q ss_pred             HHHHHHHHh
Q 030192          169 GLDWLSNNI  177 (181)
Q Consensus       169 ~~~~i~~~~  177 (181)
                      +++.+.+..
T Consensus       146 L~~~i~~~~  154 (591)
T TIGR00437       146 LKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHh
Confidence            999998753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.83  E-value=5e-20  Score=130.40  Aligned_cols=146  Identities=18%  Similarity=0.112  Sum_probs=92.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCc--cc--------------------------------ccCccceeEEEEEECCEEEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEI--VT--------------------------------TIPTIGFNVETVEYKNISFT   64 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~~~~   64 (181)
                      +|+++|++|+|||||+++|+...-  ..                                ...|.......+...+..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            589999999999999999965321  10                                01122233344556788999


Q ss_pred             EEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhh
Q 030192           65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDK  142 (181)
Q Consensus        65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~  142 (181)
                      +|||||+.++.......++.+|++++|+|+++....+.  .....++...  ..+++|+|+||+|+.+...  ..++...
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~  156 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD  156 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence            99999998887666677889999999999986532221  1112222221  1256788999999875321  1111111


Q ss_pred             hC--CCcccCcceEEEEccccCCCChHH
Q 030192          143 LG--LHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus       143 ~~--~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      +.  ...+.....+++++||++|.|+++
T Consensus       157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         157 YLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            11  001111134689999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.83  E-value=1.6e-19  Score=143.84  Aligned_cols=156  Identities=22%  Similarity=0.220  Sum_probs=102.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccccC-----ccceeEEEEEE----------------CCEEEEEEEcCCCCCc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY----------------KNISFTVWDVGGQDKI   74 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-----~~~~~~~~~~~----------------~~~~~~i~D~~g~~~~   74 (181)
                      +..-|+++|++++|||||++++.+..+....+     +.+..+.....                ....+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            45679999999999999999999876643221     22322221111                1123889999999999


Q ss_pred             ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHH
Q 030192           75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEIT  140 (181)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--------------~~~~~~  140 (181)
                      ..++..+++.+|++++|+|+++....+.. +.+ ..+..   .++|+++++||+|+.+..              ..+++.
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~-e~i-~~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQ-EAL-NILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHH-HHH-HHHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            99988899999999999999863222211 111 12222   468999999999986421              001110


Q ss_pred             h-----------hhCCCcc----------cCcceEEEEccccCCCChHHHHHHHHHH
Q 030192          141 D-----------KLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNN  176 (181)
Q Consensus       141 ~-----------~~~~~~~----------~~~~~~~~~~S~~~~~gv~~~~~~i~~~  176 (181)
                      .           .+....+          .....+++++||++|+|+++++.++...
T Consensus       158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence            0           1111111          1235789999999999999999988653

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.83  E-value=1.1e-19  Score=145.13  Aligned_cols=156  Identities=19%  Similarity=0.204  Sum_probs=112.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC--Ccccc-----------------cCccceeEEEEEECCEEEEEEEcCCCCCcccch
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG--EIVTT-----------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW   78 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   78 (181)
                      .+|+++|+.++|||||+++|+..  .+...                 ..|+......+.+.++.+++|||||+.+|...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            47999999999999999999852  22111                 123333445678889999999999999999888


Q ss_pred             hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcc--cCcce
Q 030192           79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL--RQRHW  153 (181)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~  153 (181)
                      ..+++.+|++++|+|+.+.. ......+|.....    .++|+++++||+|+.+...   .+++...+.....  .+..+
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence            99999999999999997532 3344455555544    4789999999999865321   2233333221111  23456


Q ss_pred             EEEEccccCCC----------ChHHHHHHHHHHhh
Q 030192          154 YIQSTCATSGE----------GLYEGLDWLSNNIA  178 (181)
Q Consensus       154 ~~~~~S~~~~~----------gv~~~~~~i~~~~~  178 (181)
                      +++.+|+++|.          |++.+|+.+++.+.
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            89999999996          79999999988764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK10218 GTP-binding protein; Provisional

Probab=99.83  E-value=2.5e-19  Score=143.11  Aligned_cols=159  Identities=18%  Similarity=0.194  Sum_probs=112.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc--CCcccc-------------cCcccee----EEEEEECCEEEEEEEcCCCCCcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVTT-------------IPTIGFN----VETVEYKNISFTVWDVGGQDKIR   75 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~~-------------~~~~~~~----~~~~~~~~~~~~i~D~~g~~~~~   75 (181)
                      ++-.+|+++|+.++|||||+++|+.  +.+...             .++.+++    ...+.+.++.+++|||||+.+|.
T Consensus         3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~   82 (607)
T PRK10218          3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG   82 (607)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence            3457999999999999999999986  222211             1122332    34566788999999999999999


Q ss_pred             cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCC-Ccc-cC
Q 030192           76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL-HSL-RQ  150 (181)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~~-~~~-~~  150 (181)
                      ..+..+++.+|++++|+|+.+.... .....+.....    .++|.++++||+|..+..   ..+++...+.. ... .+
T Consensus        83 ~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~  157 (607)
T PRK10218         83 GEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ  157 (607)
T ss_pred             HHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence            9999999999999999999764322 23333433333    478899999999987543   23334443321 111 23


Q ss_pred             cceEEEEccccCCC----------ChHHHHHHHHHHhh
Q 030192          151 RHWYIQSTCATSGE----------GLYEGLDWLSNNIA  178 (181)
Q Consensus       151 ~~~~~~~~S~~~~~----------gv~~~~~~i~~~~~  178 (181)
                      .+++++.+|+++|.          |+..+++.+.+.+.
T Consensus       158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            56789999999998          58888888887664

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.83  E-value=6.3e-20  Score=141.56  Aligned_cols=159  Identities=19%  Similarity=0.106  Sum_probs=103.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc------cCccceeEEEE--------------------EE------CCEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT------IPTIGFNVETV--------------------EY------KNIS   62 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~--------------------~~------~~~~   62 (181)
                      +..++|+++|+.++|||||+++|.+......      .-|....+..+                    +.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            5678999999999999999999976432111      11111111110                    01      1467


Q ss_pred             EEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hH
Q 030192           63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AE  138 (181)
Q Consensus        63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~  138 (181)
                      +.+||+||+++|...+......+|++++|+|+++........+.+. .+...  ...|+++++||+|+.+....    ++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEII--GIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence            9999999999998888777788999999999986431111222222 12211  13578999999999764322    22


Q ss_pred             HHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      +...+..  ....+++++++|+++|.|++++++.+...+.
T Consensus       159 i~~~l~~--~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       159 IKEFVKG--TVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHhhhhh--cccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            2221111  1123568999999999999999999987653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.83  E-value=1.8e-19  Score=147.46  Aligned_cols=147  Identities=20%  Similarity=0.212  Sum_probs=104.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc----------hhhcc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHYF   82 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~~   82 (181)
                      +.++|+++|++|+|||||+|++.+.+.. ...|  |.+.....+...+.+++++||||..++...          ...++
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l   81 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence            4579999999999999999999987643 2222  333344456678889999999998665421          12222


Q ss_pred             --ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcccCcceEEE
Q 030192           83 --QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQ  156 (181)
Q Consensus        83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~  156 (181)
                        +.+|++++|+|+++.++.   ..++.+...    .++|+++++||+|+.+....    +++.+.+        +.+++
T Consensus        82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L--------G~pVv  146 (772)
T PRK09554         82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARL--------GCPVI  146 (772)
T ss_pred             hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHh--------CCCEE
Confidence              479999999999876442   233333332    47999999999998754322    2233333        34688


Q ss_pred             EccccCCCChHHHHHHHHHHh
Q 030192          157 STCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       157 ~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      ++|+++|.|++++.+.+.+..
T Consensus       147 piSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        147 PLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EEEeecCCCHHHHHHHHHHhh
Confidence            999999999999999887754

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.82  E-value=5.8e-20  Score=130.99  Aligned_cols=146  Identities=21%  Similarity=0.211  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCC---------------------------cccc-------cCccceeEEEEEECCEEEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGE---------------------------IVTT-------IPTIGFNVETVEYKNISFT   64 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~---------------------------~~~~-------~~~~~~~~~~~~~~~~~~~   64 (181)
                      +|+++|++++|||||+++|+...                           ....       ..|.......+...+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            58999999999999999995321                           0000       1133333455667889999


Q ss_pred             EEEcCCCCCcccchhhccccccEEEEEEECCCccc-----H-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----C
Q 030192           65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR-----V-VEARDELHRMLNEDELRDAVLLVFANKQDLPNA----M  134 (181)
Q Consensus        65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-----~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~  134 (181)
                      +|||||+.++...+...+..+|++++|+|+++...     . ......+. ....  ...+|+++++||+|+...    .
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~iiivvNK~Dl~~~~~~~~  157 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART--LGVKQLIVAVNKMDDVTVNWSEE  157 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH--cCCCeEEEEEEccccccccccHH
Confidence            99999998877777777788999999999987421     1 11222222 2221  123789999999998732    1


Q ss_pred             CHhHHHhh----hCCCcccCcceEEEEccccCCCChH
Q 030192          135 NAAEITDK----LGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus       135 ~~~~~~~~----~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      ..+++...    +....+....++++++||++|.|++
T Consensus       158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            12222222    2222223346789999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=2.7e-20  Score=122.16  Aligned_cols=162  Identities=32%  Similarity=0.577  Sum_probs=137.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   94 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (181)
                      ++.=|++++|-.|+|||||++.+..++.....||...+...+...+..+..+|.+|+...++.|..|+-.+|++++.+|+
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda   97 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA   97 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence            56679999999999999999999999988778888877777889999999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC------------cccCcceEEEEccccC
Q 030192           95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATS  162 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~S~~~  162 (181)
                      .+.+.+.+...-+...+......+.|+++.+||+|.+.+...++++..+++.            ....+...+|.||...
T Consensus        98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~  177 (193)
T KOG0077|consen   98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR  177 (193)
T ss_pred             hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence            9999999999888888777666789999999999999887666666554321            1123456788899999


Q ss_pred             CCChHHHHHHHHHH
Q 030192          163 GEGLYEGLDWLSNN  176 (181)
Q Consensus       163 ~~gv~~~~~~i~~~  176 (181)
                      +.|.-+.|.|+.+.
T Consensus       178 ~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  178 KMGYGEGFKWLSQY  191 (193)
T ss_pred             cCccceeeeehhhh
Confidence            99988888877653

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.82  E-value=2.3e-19  Score=125.39  Aligned_cols=145  Identities=19%  Similarity=0.143  Sum_probs=95.8

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCc------------cc-------ccCccceeEEEEEECCEEEEEEEcCCCCCcccc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEI------------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL   77 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~------------~~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (181)
                      .++|+++|+.++|||||+++|++...            .+       ...|.......+..++..+.++||||+.++...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            47899999999999999999975310            00       011222333345556788999999999888877


Q ss_pred             hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCcccCc
Q 030192           78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSLRQR  151 (181)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~  151 (181)
                      ....+..+|++++|+|+...-.- .....+. .+..   .++| +|+++||+|+..... .+    ++...+....+...
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~-~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~  156 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMP-QTREHLL-LARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD  156 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcH-HHHHHHH-HHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence            77778899999999999754221 1222232 2332   3565 789999999864321 11    23333322223334


Q ss_pred             ceEEEEccccCCCCh
Q 030192          152 HWYIQSTCATSGEGL  166 (181)
Q Consensus       152 ~~~~~~~S~~~~~gv  166 (181)
                      +++++++|+++|.|+
T Consensus       157 ~v~iipiSa~~g~n~  171 (195)
T cd01884         157 NTPIVRGSALKALEG  171 (195)
T ss_pred             CCeEEEeeCccccCC
Confidence            678999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.81  E-value=3.7e-19  Score=137.30  Aligned_cols=159  Identities=18%  Similarity=0.111  Sum_probs=101.2

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc------ccCccceeEEEEEE--------------------------CCE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVETVEY--------------------------KNI   61 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~--------------------------~~~   61 (181)
                      .+..++|+++|+.++|||||+.+|.+.....      ...|....+.....                          ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            3567999999999999999999996532211      11122221111000                          025


Q ss_pred             EEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh---
Q 030192           62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---  137 (181)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~---  137 (181)
                      .+.+|||||+++|..........+|++++|+|++++. ..+ ....+.. +...  ...|+++++||+|+.+.....   
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~-t~~~l~~-l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQ-TKEHLMA-LDII--GIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChh-HHHHHHH-HHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence            7999999999888766555556789999999998643 121 1111221 1111  234789999999997643322   


Q ss_pred             -HHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          138 -EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       138 -~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                       ++...+..  ....+++++++||++|.|++++++.+.+.+.
T Consensus       162 ~~i~~~l~~--~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        162 EQIKEFVKG--TVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHhcc--ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence             22222111  1123568999999999999999999988654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.81  E-value=9.3e-19  Score=139.85  Aligned_cols=153  Identities=22%  Similarity=0.265  Sum_probs=101.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccC-----ccceeEEEEEE------CC-----E-----EEEEEEcCCCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY------KN-----I-----SFTVWDVGGQDK   73 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-----~~~~~~~~~~~------~~-----~-----~~~i~D~~g~~~   73 (181)
                      .+...|+++|++|+|||||++++.+.......+     +.+..+.....      ..     .     .+.+|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            466789999999999999999998765433222     23322221110      00     1     268999999999


Q ss_pred             cccchhhccccccEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------H
Q 030192           74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------A  136 (181)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------------~  136 (181)
                      |...+...+..+|++++|+|+++   ++++..+.     .+..   .++|+++++||+|+.....              .
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~  155 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS  155 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence            99888888889999999999986   33333221     2222   4789999999999852100              0


Q ss_pred             h-----------HHHhhhCCCccc----------CcceEEEEccccCCCChHHHHHHHHH
Q 030192          137 A-----------EITDKLGLHSLR----------QRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus       137 ~-----------~~~~~~~~~~~~----------~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                      .           ++...+....+.          ...++++++||++|.|+++++..+..
T Consensus       156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence            0           011111111111          13578999999999999999988764

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.80  E-value=6.1e-19  Score=125.76  Aligned_cols=152  Identities=24%  Similarity=0.223  Sum_probs=99.4

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccc-----------------cCc-------cceeE-----------------EEEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTT-----------------IPT-------IGFNV-----------------ETVE   57 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~-----------------~~~-------~~~~~-----------------~~~~   57 (181)
                      +|+++|+.++|||||+++|..+.+...                 ..+       .++..                 ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            589999999999999999986543210                 001       11110                 1223


Q ss_pred             ECCEEEEEEEcCCCCCcccchhhccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030192           58 YKNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN  135 (181)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  135 (181)
                      ..+..+.++|+||+.+|.+.....+.  .+|++++|+|+.....  .....+..++..   .++|+++++||+|+.+...
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~  155 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA---LNIPVFVVVTKIDLAPANI  155 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence            45678999999999888766554443  6999999999875432  233333333333   4689999999999875432


Q ss_pred             H----hHHHhhhCCCcc---------------------cCcceEEEEccccCCCChHHHHHHHHH
Q 030192          136 A----AEITDKLGLHSL---------------------RQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus       136 ~----~~~~~~~~~~~~---------------------~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                      .    +++.+.+.....                     .....++|.+|+.+|.|++++...|..
T Consensus       156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            2    233333332111                     123458999999999999999987754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=4.2e-19  Score=119.08  Aligned_cols=155  Identities=22%  Similarity=0.340  Sum_probs=131.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEEE----CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .++++++|..|.||++++.+.+.+.|. .+.+|.+...+....    ..+++..|||.|++.+......++-+..+.+++
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim   89 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM   89 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence            689999999999999999999999887 468899988765433    348999999999999999988888899999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      ||++..-.+.+...|..++++.-  .++||++++||.|.....     .......+.+..+..+++.|++.+-|.+.-|-
T Consensus        90 FdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPFl  162 (216)
T KOG0096|consen   90 FDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPFL  162 (216)
T ss_pred             eeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccchH
Confidence            99999999999999999987754  479999999999976543     12223455566778899999999999999999


Q ss_pred             HHHHHhh
Q 030192          172 WLSNNIA  178 (181)
Q Consensus       172 ~i~~~~~  178 (181)
                      |+.+++.
T Consensus       163 ~LarKl~  169 (216)
T KOG0096|consen  163 WLARKLT  169 (216)
T ss_pred             HHhhhhc
Confidence            9988764

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.80  E-value=1.5e-18  Score=126.16  Aligned_cols=163  Identities=20%  Similarity=0.177  Sum_probs=116.8

Q ss_pred             HHHhhhc--ccccEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECCEEEEEEEcCCCCC--------c
Q 030192            8 LFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDK--------I   74 (181)
Q Consensus         8 ~~~~~~~--~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~   74 (181)
                      .+++++.  ....+|++.|.||+|||||++.+.+.+.. ..  ..|.++....+..+..+++++||||--+        -
T Consensus       157 ~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~I  236 (346)
T COG1084         157 HLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEI  236 (346)
T ss_pred             HHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHH
Confidence            4444544  36789999999999999999999988764 22  4578888888888989999999999321        1


Q ss_pred             ccchhhccc-cccEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCc
Q 030192           75 RPLWRHYFQ-NTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR  151 (181)
Q Consensus        75 ~~~~~~~~~-~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  151 (181)
                      .......++ -.++++|++|.+..+  +++.....|.++-..   .+.|+++|+||+|..+.+..+++..........  
T Consensus       237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~--  311 (346)
T COG1084         237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGGE--  311 (346)
T ss_pred             HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhccc--
Confidence            111222223 378899999998654  557777777777665   458999999999999876666665544332221  


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHh
Q 030192          152 HWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       152 ~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                        ....+++..+.+++.+-+.+....
T Consensus       312 --~~~~~~~~~~~~~d~~~~~v~~~a  335 (346)
T COG1084         312 --EPLKISATKGCGLDKLREEVRKTA  335 (346)
T ss_pred             --cccceeeeehhhHHHHHHHHHHHh
Confidence              133578888888887777766653

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.80  E-value=5.6e-19  Score=141.76  Aligned_cols=154  Identities=21%  Similarity=0.143  Sum_probs=102.0

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCC---ccc---ccCccceeEEEEEE-CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGE---IVT---TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~---~~~---~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      +-|+++|+.++|||||+++|.+..   +.+   ...|+...+..+.. ++..+.+||+||+++|.......+..+|++++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            358999999999999999998643   221   13344443334433 45678999999999987777777889999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHhHHHhhhCCCcccC---cceEEEEccccCCCCh
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEITDKLGLHSLRQ---RHWYIQSTCATSGEGL  166 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~S~~~~~gv  166 (181)
                      |+|++....  ........++..   .++| +++|+||+|+.+....++....+.. .+..   ...+++++|+++|.|+
T Consensus        81 VVda~eg~~--~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~-~l~~~~~~~~~ii~VSA~tG~gI  154 (614)
T PRK10512         81 VVACDDGVM--AQTREHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKA-VLREYGFAEAKLFVTAATEGRGI  154 (614)
T ss_pred             EEECCCCCc--HHHHHHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHH-HHHhcCCCCCcEEEEeCCCCCCC
Confidence            999976321  111111223322   2344 6799999999764333222222210 1111   1357899999999999


Q ss_pred             HHHHHHHHHHh
Q 030192          167 YEGLDWLSNNI  177 (181)
Q Consensus       167 ~~~~~~i~~~~  177 (181)
                      +++++.+.+..
T Consensus       155 ~~L~~~L~~~~  165 (614)
T PRK10512        155 DALREHLLQLP  165 (614)
T ss_pred             HHHHHHHHHhh
Confidence            99999997654

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.79  E-value=2.4e-18  Score=135.56  Aligned_cols=150  Identities=22%  Similarity=0.267  Sum_probs=112.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEECCEEEEEEEcCCCCC------cccchhhcc--cc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDK------IRPLWRHYF--QN   84 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~------~~~~~~~~~--~~   84 (181)
                      +..+|+++|.||+|||||.|++++.+.. .+-|  |.+-....+...+.++++.|+||--.      -+....+++  .+
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            4567999999999999999999998754 5555  55555666778888999999999321      122233333  36


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEccc
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      .|+++.|+|+++.++-   .....+++.    .+.|+++++|++|..+..    ..+++.+.++.        +++++||
T Consensus        82 ~D~ivnVvDAtnLeRn---LyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA  146 (653)
T COG0370          82 PDLIVNVVDATNLERN---LYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVA  146 (653)
T ss_pred             CCEEEEEcccchHHHH---HHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEe
Confidence            8999999999876443   333333433    478999999999987643    45567777766        5999999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030192          161 TSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~~  180 (181)
                      ++|.|++++.+.+.+...++
T Consensus       147 ~~g~G~~~l~~~i~~~~~~~  166 (653)
T COG0370         147 KRGEGLEELKRAIIELAESK  166 (653)
T ss_pred             ecCCCHHHHHHHHHHhcccc
Confidence            99999999999998766554

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.79  E-value=1.1e-18  Score=119.00  Aligned_cols=152  Identities=20%  Similarity=0.227  Sum_probs=94.2

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECCEEEEEEEcCCCCC----------cccchhhccc--
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ--   83 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~--   83 (181)
                      .|+++|++|+|||||++.+.+.... ...++.+.+.  ..+... ..+.+||+||...          +......++.  
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR   79 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence            4899999999999999999965443 2333333322  222222 3899999999543          2233333333  


Q ss_pred             -cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc--cCcceEEEEccc
Q 030192           84 -NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL--RQRHWYIQSTCA  160 (181)
Q Consensus        84 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~S~  160 (181)
                       +.+++++++|.....+...  ..+...+..   .+.|+++++||+|+............... .+  .....+++++|+
T Consensus        80 ~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~Sa  153 (170)
T cd01876          80 ENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKK-ELKLFEIDPPIILFSS  153 (170)
T ss_pred             hhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHH-HHHhccCCCceEEEec
Confidence             4678999999976532211  112222222   25889999999998654332222222210 01  123346889999


Q ss_pred             cCCCChHHHHHHHHHHh
Q 030192          161 TSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~  177 (181)
                      +++.|++++++++.+.+
T Consensus       154 ~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         154 LKGQGIDELRALIEKWL  170 (170)
T ss_pred             CCCCCHHHHHHHHHHhC
Confidence            99999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.79  E-value=1.5e-18  Score=125.39  Aligned_cols=152  Identities=29%  Similarity=0.367  Sum_probs=106.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc--cc-cCccceeEEEEEECCE-EEEEEEcCCCCCcc-------cchhhccccc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNI-SFTVWDVGGQDKIR-------PLWRHYFQNT   85 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~i~D~~g~~~~~-------~~~~~~~~~~   85 (181)
                      ...+.++|-||+|||||++++...+..  ++ ..|.......+.+++. .+.+-|.||--+..       ......++.|
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            347899999999999999999987642  11 2233333334555544 49999999932211       1233445789


Q ss_pred             cEEEEEEECCCc---ccHHHHHHHHHHH-HcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEcc
Q 030192           86 QGLIFVVDSNDR---DRVVEARDELHRM-LNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTC  159 (181)
Q Consensus        86 d~~i~v~d~~~~---~s~~~~~~~~~~~-~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      +.+++|+|++.+   ..++.....+.++ ..+..+.+.|.++|+||+|+.+.+..  +++.+.+.-.       .++++|
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~pvs  348 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVPVS  348 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEEee
Confidence            999999999987   6676666655444 23445567999999999999654322  4555555433       688999


Q ss_pred             ccCCCChHHHHHHHHH
Q 030192          160 ATSGEGLYEGLDWLSN  175 (181)
Q Consensus       160 ~~~~~gv~~~~~~i~~  175 (181)
                      |+.++|++++++.+-.
T Consensus       349 A~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  349 AKSGEGLEELLNGLRE  364 (366)
T ss_pred             eccccchHHHHHHHhh
Confidence            9999999999987754

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.78  E-value=6.3e-18  Score=123.62  Aligned_cols=109  Identities=18%  Similarity=0.114  Sum_probs=80.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCC--cc------------c-------ccCccceeEEEEEECCEEEEEEEcCCCCCcccc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGE--IV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL   77 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~--~~------------~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (181)
                      +|+++|++|+|||||+++++...  ..            .       ...|.......+.+.+..++++||||+.++...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            58999999999999999996411  00            0       011333444567778999999999999988888


Q ss_pred             hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      +..+++.+|++++|+|+.+...-+ ....+.....    .++|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~----~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR----YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence            888999999999999997643322 2233333322    4689999999999863

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK12736 elongation factor Tu; Reviewed

Probab=99.78  E-value=2.5e-18  Score=132.20  Aligned_cols=159  Identities=19%  Similarity=0.149  Sum_probs=103.8

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCc------------c-------cccCccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI   74 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~------------~-------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (181)
                      .+..++|+++|+.++|||||+++|++...            .       ....|.......+...+..+.++||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            46789999999999999999999976310            0       0111333333344446778999999999888


Q ss_pred             ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHh-----HHHhhhCCCcc
Q 030192           75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAA-----EITDKLGLHSL  148 (181)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~-----~~~~~~~~~~~  148 (181)
                      ..........+|++++|+|+.....-+ ..+.+.. +..   .++| +|+++||+|+.+.++..     ++...+....+
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~-~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~  163 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILL-ARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHH-HHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence            777666678899999999997532221 2222222 222   3566 67899999987432211     22222222222


Q ss_pred             cCcceEEEEccccCCC--------ChHHHHHHHHHHh
Q 030192          149 RQRHWYIQSTCATSGE--------GLYEGLDWLSNNI  177 (181)
Q Consensus       149 ~~~~~~~~~~S~~~~~--------gv~~~~~~i~~~~  177 (181)
                      .....+++++|+++|.        +++++++.+.+.+
T Consensus       164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence            2234689999999983        5778888777654

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=8.1e-18  Score=115.19  Aligned_cols=165  Identities=25%  Similarity=0.387  Sum_probs=122.2

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccc---cccEE
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ---NTQGL   88 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~   88 (181)
                      ..+...-.|+++|+.+||||+|.-+|..+......+++..+...+........++|.||+.+.+.....++.   .+-++
T Consensus        33 ~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   33 FRRSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             HhhccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            333455789999999999999999999997777777887777777777777999999999998887777776   79999


Q ss_pred             EEEEECCC-cccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------------------
Q 030192           89 IFVVDSND-RDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLG---------------------  144 (181)
Q Consensus        89 i~v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------------------  144 (181)
                      ++|+|+.. ........+.+-+++...  ....+|+++.+||.|+.-+...+-+++.++                     
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~  192 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI  192 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence            99999864 344556666666666554  346789999999999865433222222110                     


Q ss_pred             --------------CCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          145 --------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       145 --------------~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                                    ...+....+.+.++|++++ +++++-+|+..++
T Consensus       193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                          0011224678999999998 7999988887653

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.78  E-value=2.6e-19  Score=138.03  Aligned_cols=160  Identities=16%  Similarity=0.193  Sum_probs=122.3

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE---EEEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ..+.++|+++|+.|+||||||-++..+.++...|..-..+   ..+.-+.+...+.|++..++-+.....-++++|++++
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            3678999999999999999999999999876544221111   2233456778999999777666665666799999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCH--hH----HHhhhCCCcccCcceEEEEccccC
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNA--AE----ITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      ||+.++++++..+...|...+++..  ..++|+|+|+||+|.......  +.    +...+..      --.+++|||++
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E------iEtciecSA~~  159 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE------IETCIECSALT  159 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH------HHHHHhhhhhh
Confidence            9999999999999999999998754  246999999999998765432  22    2222111      11477999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030192          163 GEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~~~  179 (181)
                      -.++.++|.+..+++..
T Consensus       160 ~~n~~e~fYyaqKaVih  176 (625)
T KOG1707|consen  160 LANVSELFYYAQKAVIH  176 (625)
T ss_pred             hhhhHhhhhhhhheeec
Confidence            99999999998887653

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.78  E-value=1.1e-17  Score=122.78  Aligned_cols=109  Identities=20%  Similarity=0.194  Sum_probs=80.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc--c-------------------ccCccceeEEEEEECCEEEEEEEcCCCCCcccc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV--T-------------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL   77 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~--~-------------------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (181)
                      +|+++|++|+|||||+++++...-.  .                   ...+.......+.+.+..+++|||||+.++...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            5899999999999999999743210  0                   012333344556778899999999999888888


Q ss_pred             hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      +..+++.+|++++|+|+++...... ...|.....    .++|.++++||+|...
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~----~~~p~iivvNK~D~~~  130 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE----AGIPRIIFINKMDRER  130 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCccCC
Confidence            8888899999999999987654432 223332222    4689999999999863

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.77  E-value=3.1e-18  Score=123.19  Aligned_cols=159  Identities=16%  Similarity=0.191  Sum_probs=104.3

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE----EEEEECCEEEEEEEcCCCCC------------cccc
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV----ETVEYKNISFTVWDVGGQDK------------IRPL   77 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~D~~g~~~------------~~~~   77 (181)
                      +.+.++|+++|.||+|||||.|.+.+.+.......+..+-    ..+.-+...+.++||||--.            +...
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~  148 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN  148 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence            3678999999999999999999999998764433222222    33444778999999999211            1112


Q ss_pred             hhhccccccEEEEEEECCCcccH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---------------C--HhH
Q 030192           78 WRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---------------N--AAE  138 (181)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~---------------~--~~~  138 (181)
                      .....+++|.+++|+|+++....  ......+...      .++|-++|+||.|.....               .  ..+
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~  222 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE  222 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence            23345789999999999864332  1222222222      368899999999976421               1  112


Q ss_pred             HHhhhCCCc-----ccCcce----EEEEccccCCCChHHHHHHHHHHhh
Q 030192          139 ITDKLGLHS-----LRQRHW----YIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       139 ~~~~~~~~~-----~~~~~~----~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      +.+.+....     -+.++|    .+|.+||++|+|++++-+++.....
T Consensus       223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            222222111     112334    4889999999999999999987653

>PRK12735 elongation factor Tu; Reviewed

Probab=99.77  E-value=4.3e-18  Score=131.05  Aligned_cols=158  Identities=20%  Similarity=0.154  Sum_probs=101.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC-------Cc-----cc-------ccCccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG-------EI-----VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR   75 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~-------~~-----~~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (181)
                      +..++|+++|++++|||||+++|++.       .+     ..       ..-|.......+..++..+.++||||+.+|.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence            56789999999999999999999862       11     00       0112223333344567789999999998887


Q ss_pred             cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCC-Hh----HHHhhhCCCccc
Q 030192           76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMN-AA----EITDKLGLHSLR  149 (181)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~-~~----~~~~~~~~~~~~  149 (181)
                      ......+..+|++++|+|+.+.... ...+.+.....    .++|.+ +++||+|+.+... .+    ++...+....+.
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~  164 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence            7666777889999999999763222 12222322222    356755 6799999974322 11    222222111111


Q ss_pred             CcceEEEEccccCCC----------ChHHHHHHHHHHh
Q 030192          150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI  177 (181)
Q Consensus       150 ~~~~~~~~~S~~~~~----------gv~~~~~~i~~~~  177 (181)
                      ...++++++|+++|.          ++.++++.+.+.+
T Consensus       165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            224789999999984          6778888777654

>PRK13351 elongation factor G; Reviewed

Probab=99.77  E-value=2.3e-17  Score=135.01  Aligned_cols=115  Identities=18%  Similarity=0.127  Sum_probs=88.6

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCC-------------cc--------cccCccceeEEEEEECCEEEEEEEcCCCC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGE-------------IV--------TTIPTIGFNVETVEYKNISFTVWDVGGQD   72 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-------------~~--------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (181)
                      .++..+|+++|+.|+|||||+++|+...             ..        ....|.......+.+.+..+++|||||+.
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~   84 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI   84 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence            3567899999999999999999997521             00        11234555556778889999999999999


Q ss_pred             CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      ++...+..+++.+|++++|+|+++....+.. ..|.....    .++|+++++||+|+...
T Consensus        85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence            9988889999999999999999876665433 33333322    47899999999998753

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.76  E-value=4e-17  Score=129.09  Aligned_cols=113  Identities=20%  Similarity=0.234  Sum_probs=82.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC--Ccc---------------c-c-------cCccceeEEEEEECCEEEEEEEcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV---------------T-T-------IPTIGFNVETVEYKNISFTVWDVG   69 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~---------------~-~-------~~~~~~~~~~~~~~~~~~~i~D~~   69 (181)
                      .+..+|+++|++|+|||||.++|+..  ...               . .       ..+.......+.+.++.+++||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            46789999999999999999999631  110               0 0       012222334577789999999999


Q ss_pred             CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      |+.+|......+++.+|++++|+|+++.... ....+|... ..   .++|+++++||+|+..
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~-~~---~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC-RL---RDTPIFTFINKLDRDG  145 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH-Hh---cCCCEEEEEECCcccc
Confidence            9999988777788999999999999865332 233334333 22   5799999999999865

>cd04169 RF3 RF3 subfamily

Probab=99.76  E-value=2.2e-17  Score=120.62  Aligned_cols=122  Identities=21%  Similarity=0.261  Sum_probs=86.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCC--ccc---------------c--------cCccceeEEEEEECCEEEEEEEcCCCC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGE--IVT---------------T--------IPTIGFNVETVEYKNISFTVWDVGGQD   72 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~--~~~---------------~--------~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (181)
                      .+|+++|++|+|||||+++++...  ...               .        ..+.......+.+.+..+++|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            579999999999999999997421  000               0        112223345677889999999999999


Q ss_pred             CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhC
Q 030192           73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLG  144 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~  144 (181)
                      +|......+++.+|++++|+|+++.... ....+|. ....   .++|+++++||+|+.....   .+++...++
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~-~~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~  152 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFE-VCRL---RGIPIITFINKLDREGRDPLELLDEIEEELG  152 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHH-HHHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence            8887777788999999999999865332 2223333 3222   4789999999999866432   345555444

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>CHL00071 tufA elongation factor Tu

Probab=99.76  E-value=7.3e-18  Score=130.28  Aligned_cols=147  Identities=19%  Similarity=0.171  Sum_probs=96.0

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcc-----------------cccC--ccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-----------------TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI   74 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-----------------~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (181)
                      .+..++|+++|++++|||||+++|++..-.                 +..+  |.......+..++..+.++||||+.+|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            466799999999999999999999864110                 0001  222223344556778999999999888


Q ss_pred             ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCcc
Q 030192           75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSL  148 (181)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~  148 (181)
                      .......+..+|++++|+|+...-. ....+.+ ..+..   .++| +|+++||+|+.+.... +    ++...+....+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~-~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~  163 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHI-LLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHH-HHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            7777777789999999999975322 1222222 23322   3567 7789999999753221 1    22233222222


Q ss_pred             cCcceEEEEccccCCCC
Q 030192          149 RQRHWYIQSTCATSGEG  165 (181)
Q Consensus       149 ~~~~~~~~~~S~~~~~g  165 (181)
                      ....++++++|+.+|.+
T Consensus       164 ~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        164 PGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCCcceEEEcchhhccc
Confidence            22347899999999874

>cd04167 Snu114p Snu114p subfamily

Probab=99.76  E-value=1.6e-17  Score=117.97  Aligned_cols=108  Identities=18%  Similarity=0.150  Sum_probs=76.7

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccc------------------cCcccee----EEEEE-----ECCEEEEEEEcCCC
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTT------------------IPTIGFN----VETVE-----YKNISFTVWDVGGQ   71 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~----~~~~~-----~~~~~~~i~D~~g~   71 (181)
                      +|+++|+.|+|||||+++|........                  ....+..    ...+.     ...+.+++|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999976432110                  0011111    12221     23578999999999


Q ss_pred             CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      .++......++..+|++++|+|+++..+... ..++.....    .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            9998888888899999999999987665432 233333322    358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.76  E-value=4.5e-17  Score=121.76  Aligned_cols=153  Identities=20%  Similarity=0.225  Sum_probs=110.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc---cccCccceeEEEEEEC-CEEEEEEEcCCCCC---------cccchhhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQDK---------IRPLWRHY   81 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~---------~~~~~~~~   81 (181)
                      ..-..|.++|-+|+|||||+|++.+....   ..+.|...+...+... +..+.+.||.|--+         |+..... 
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE-  268 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE-  268 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-
Confidence            46679999999999999999999977644   2356777777777775 57899999999322         2222222 


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccc
Q 030192           82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      ...+|+++.|+|+++|.-. .....-.+++.+.....+|+|+|.||+|+..... ...+....        + ..+.+||
T Consensus       269 ~~~aDlllhVVDaSdp~~~-~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~--------~-~~v~iSA  338 (411)
T COG2262         269 VKEADLLLHVVDASDPEIL-EKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS--------P-NPVFISA  338 (411)
T ss_pred             hhcCCEEEEEeecCChhHH-HHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC--------C-CeEEEEe
Confidence            2579999999999998443 3344445555555546799999999999765433 11221111        1 3567999


Q ss_pred             cCCCChHHHHHHHHHHhh
Q 030192          161 TSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~  178 (181)
                      ++|.|++.+.+.|...+.
T Consensus       339 ~~~~gl~~L~~~i~~~l~  356 (411)
T COG2262         339 KTGEGLDLLRERIIELLS  356 (411)
T ss_pred             ccCcCHHHHHHHHHHHhh
Confidence            999999999999988765

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.76  E-value=1.8e-18  Score=118.04  Aligned_cols=126  Identities=27%  Similarity=0.434  Sum_probs=79.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE---CCEEEEEEEcCCCCCcccchhhc---cccccEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHY---FQNTQGLI   89 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~---~~~~d~~i   89 (181)
                      +.-.|+++|+.|||||+|..+|..+....+..++..+.. +..   ....+.++|+||+.+.+......   ..++.++|
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II   80 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA-YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII   80 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE-CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce-EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence            346799999999999999999999977666555543332 222   34579999999999988755444   78899999


Q ss_pred             EEEECCC-cccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhh
Q 030192           90 FVVDSND-RDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDK  142 (181)
Q Consensus        90 ~v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~  142 (181)
                      ||+|++. +..+....+.+.+++...  ....+|+++++||.|+........+...
T Consensus        81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~  136 (181)
T PF09439_consen   81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKL  136 (181)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHH
T ss_pred             EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHH
Confidence            9999974 444555666665555432  2356999999999999875544444433

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.75  E-value=8.2e-18  Score=118.10  Aligned_cols=156  Identities=15%  Similarity=0.151  Sum_probs=95.2

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccce---e--EEEEEE-CCEEEEEEEcCCCCCcccchhhc-----ccc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF---N--VETVEY-KNISFTVWDVGGQDKIRPLWRHY-----FQN   84 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~---~--~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~-----~~~   84 (181)
                      .++|+++|++|+|||||+|.+.+..... ..++.+.   +  ...+.. ....+.+||+||..........+     +.+
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            3689999999999999999999865432 2222221   1  111111 12478999999975432222222     567


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhC---CCccc---
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLG---LHSLR---  149 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~---~~~~~---  149 (181)
                      +|++++|.+.    ++......+...+..   .+.|+++|+||+|+..+..         .+++.+.+.   ...++   
T Consensus        81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            8998887432    344455555555554   3678999999999843211         112221111   00011   


Q ss_pred             CcceEEEEcccc--CCCChHHHHHHHHHHhhh
Q 030192          150 QRHWYIQSTCAT--SGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       150 ~~~~~~~~~S~~--~~~gv~~~~~~i~~~~~~  179 (181)
                      ....++|.+|+.  .+.|+..+.+.+...|.+
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence            122368889998  578999999999988765

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.75  E-value=2.8e-17  Score=126.57  Aligned_cols=146  Identities=19%  Similarity=0.122  Sum_probs=93.3

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCC------------ccc-------ccCccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IVT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKI   74 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (181)
                      .+..++|+++|+.++|||||+++|++..            ...       ...|.......+...+..+.+|||||+++|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            3677999999999999999999997420            000       112333334445556778999999999988


Q ss_pred             ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCCCCCCCCH-h----HHHhhhCCCcc
Q 030192           75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQDLPNAMNA-A----EITDKLGLHSL  148 (181)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~~~~~~-~----~~~~~~~~~~~  148 (181)
                      ..........+|++++|+|+......+ ..+.+.....    .++|. |+++||+|+.+.... +    ++...+....+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~  163 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence            776666667899999999997632222 2222222222    35564 578999998753221 1    22222222222


Q ss_pred             cCcceEEEEccccCCC
Q 030192          149 RQRHWYIQSTCATSGE  164 (181)
Q Consensus       149 ~~~~~~~~~~S~~~~~  164 (181)
                      ....++++++|+++|.
T Consensus       164 ~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       164 PGDDTPIIRGSALKAL  179 (394)
T ss_pred             CccCccEEECcccccc
Confidence            2223789999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=7.4e-17  Score=123.93  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=113.7

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCC-----------cccc-------cCccceeEEEEEE---CCEEEEEEEcCCC
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGE-----------IVTT-------IPTIGFNVETVEY---KNISFTVWDVGGQ   71 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~-----------~~~~-------~~~~~~~~~~~~~---~~~~~~i~D~~g~   71 (181)
                      +.++-.++.|+.+...|||||.++++...           +.+.       .-|+.-....+-+   ..+.++++|||||
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            33677899999999999999999996421           1000       1122222233333   4599999999999


Q ss_pred             CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcc
Q 030192           72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL  148 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~  148 (181)
                      .+|.......+..|+++++|+|++..-..+.....+..+-     .+..+|.|+||+|++.+..   ..++.+.+.... 
T Consensus       136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~-  209 (650)
T KOG0462|consen  136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPP-  209 (650)
T ss_pred             ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc-
Confidence            9999999999999999999999987655566666665553     3677999999999986532   223333333332 


Q ss_pred             cCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       149 ~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                          .+++.+|||+|.|++++++.+++.+.
T Consensus       210 ----~~~i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  210 ----AEVIYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             ----cceEEEEeccCccHHHHHHHHHhhCC
Confidence                26778999999999999999998764

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.74  E-value=1.5e-16  Score=115.54  Aligned_cols=153  Identities=22%  Similarity=0.198  Sum_probs=107.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc--cc-cCccceeEEEEEECCEEEEEEEcCCC----CCc---ccchhhcccc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQ----DKI---RPLWRHYFQN   84 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~---~~~~~~~~~~   84 (181)
                      ...-+++++|.|++|||||++.+++.+..  ++ +.|......-+++++.++++.|+||-    ...   -+......++
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            34569999999999999999999987643  22 33444445558889999999999972    111   2445667799


Q ss_pred             ccEEEEEEECCCccc-HHHHHHHHHH----------------------------------------HHcCC---------
Q 030192           85 TQGLIFVVDSNDRDR-VVEARDELHR----------------------------------------MLNED---------  114 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~~---------  114 (181)
                      ||++++|+|+..... .+.+...+.+                                        ++++.         
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999986543 3233222221                                        11110         


Q ss_pred             ---------------CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          115 ---------------ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       115 ---------------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                                     ...-+|.++|.||.|+...+..+.+.+..          .++.+||+.+.|++++.+.+.+.+
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhh
Confidence                           01235799999999998755555554443          367899999999999999999876

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.74  E-value=2.1e-17  Score=134.02  Aligned_cols=160  Identities=16%  Similarity=0.092  Sum_probs=101.9

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCc--cc------------c----------------------cCc
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI--VT------------T----------------------IPT   48 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~------------~----------------------~~~   48 (181)
                      +..++.+...+..++|+++|++++|||||+++|+...-  .+            .                      .-|
T Consensus        12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T   91 (632)
T PRK05506         12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT   91 (632)
T ss_pred             HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence            45667777778889999999999999999999975321  00            0                      012


Q ss_pred             cceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030192           49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ  128 (181)
Q Consensus        49 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~  128 (181)
                      ....+..+...+..+.++||||++++..........+|++++|+|+.....-+.... + .++...  ..+++++++||+
T Consensus        92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~-~~~~~~--~~~~iivvvNK~  167 (632)
T PRK05506         92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-S-FIASLL--GIRHVVLAVNKM  167 (632)
T ss_pred             ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-H-HHHHHh--CCCeEEEEEEec
Confidence            222334455677889999999998876655666789999999999975422111111 1 111111  236789999999


Q ss_pred             CCCCC--CCHhHHHhhhCC--CcccCcceEEEEccccCCCChHH
Q 030192          129 DLPNA--MNAAEITDKLGL--HSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus       129 Dl~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |+.+.  ...+++...+..  ..+.....+++++||++|.|+++
T Consensus       168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            98742  112222222210  00111235688999999999874

>PRK00049 elongation factor Tu; Reviewed

Probab=99.74  E-value=3.8e-17  Score=125.74  Aligned_cols=158  Identities=18%  Similarity=0.152  Sum_probs=102.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc------------c-------cccCccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR   75 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~------------~-------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (181)
                      +..++|+++|+.++|||||+++|++...            .       ....|.......+..++..+.++||||+.+|.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence            6779999999999999999999986210            0       00113333333444467789999999998887


Q ss_pred             cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCC-Hh----HHHhhhCCCccc
Q 030192           76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMN-AA----EITDKLGLHSLR  149 (181)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~-~~----~~~~~~~~~~~~  149 (181)
                      ......+..+|++++|+|+.....- ...+.+ ..+..   .++|.+ +++||+|+.+... .+    ++...+....+.
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~-~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  164 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGPMP-QTREHI-LLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCch-HHHHHH-HHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence            7777777899999999999754221 222222 23332   357765 6899999975321 11    232333222222


Q ss_pred             CcceEEEEccccCCC----------ChHHHHHHHHHHh
Q 030192          150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI  177 (181)
Q Consensus       150 ~~~~~~~~~S~~~~~----------gv~~~~~~i~~~~  177 (181)
                      ...++++.+|++++.          |+.++++.+...+
T Consensus       165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            345688999999875          4667777766543

>PLN03126 Elongation factor Tu; Provisional

Probab=99.73  E-value=7.6e-17  Score=126.07  Aligned_cols=147  Identities=20%  Similarity=0.146  Sum_probs=97.5

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCC------cc-----------c--ccCccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGE------IV-----------T--TIPTIGFNVETVEYKNISFTVWDVGGQDKI   74 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------~~-----------~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (181)
                      .+..++|+++|++++|||||+++|++..      ..           +  ...|.......+..++..+.++|+||+.+|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            3567899999999999999999998521      00           0  011222333445567889999999999998


Q ss_pred             ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCcc
Q 030192           75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSL  148 (181)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~----~~~~~~~~~~~  148 (181)
                      .......+..+|++++|+|+.+...- ...+.+.....    .++| +|+++||+|+.+.+. .+    ++...+....+
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            87777777889999999999754322 22333333322    3666 788999999976322 11    22233322222


Q ss_pred             cCcceEEEEccccCCCC
Q 030192          149 RQRHWYIQSTCATSGEG  165 (181)
Q Consensus       149 ~~~~~~~~~~S~~~~~g  165 (181)
                      ....++++.+|+.++.+
T Consensus       233 ~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        233 PGDDIPIISGSALLALE  249 (478)
T ss_pred             CcCcceEEEEEcccccc
Confidence            33467899999988753

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.73  E-value=2.6e-19  Score=119.77  Aligned_cols=160  Identities=17%  Similarity=0.269  Sum_probs=124.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEE---CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      --++++++|.-|+||||++.++....+. .+.++++..+.  ...+   .-+++++||..|++++..+...+++.+++.+
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~  103 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF  103 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence            3468999999999999999999988876 45667775542  1222   3467899999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCC---CeEEEEEeCCCCCCCC---CHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRD---AVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~---~piivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  163 (181)
                      +|||+++.-.++....|.+++.....+++   .|+++..||||.....   ..+.+.+.-....+.    ..+++|+|.+
T Consensus       104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~----gwtets~Ken  179 (229)
T KOG4423|consen  104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE----GWTETSAKEN  179 (229)
T ss_pred             EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc----ceeeeccccc
Confidence            99999999999999999888877655544   7899999999976532   122333322222222    3779999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030192          164 EGLYEGLDWLSNNIAS  179 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~~  179 (181)
                      .+++|+.+.++.++.-
T Consensus       180 kni~Ea~r~lVe~~lv  195 (229)
T KOG4423|consen  180 KNIPEAQRELVEKILV  195 (229)
T ss_pred             cChhHHHHHHHHHHHh
Confidence            9999999999987753

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.73  E-value=2.9e-17  Score=128.71  Aligned_cols=152  Identities=18%  Similarity=0.128  Sum_probs=97.3

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCc--cc------------c----------------------cCccceeEEEE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI--VT------------T----------------------IPTIGFNVETV   56 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~------------~----------------------~~~~~~~~~~~   56 (181)
                      ..+..++|+++|++++|||||+++|+...-  ..            .                      .-|+...+..+
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            346789999999999999999999964320  00            0                      01223333445


Q ss_pred             EECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCC-
Q 030192           57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAM-  134 (181)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~-  134 (181)
                      ..++..+.++||||+++|.......+..+|++++|+|+...-.-+.... .+...+.     ..|+|+++||+|+.+.. 
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-----~~~iIvvvNKiD~~~~~~  177 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-----IKHLVVAVNKMDLVDYSE  177 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-----CCceEEEEEeeccccchh
Confidence            5677899999999998887665656789999999999975322111111 1112211     25789999999987422 


Q ss_pred             -CHhHHHhhhCC--Cccc-CcceEEEEccccCCCChHHH
Q 030192          135 -NAAEITDKLGL--HSLR-QRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus       135 -~~~~~~~~~~~--~~~~-~~~~~~~~~S~~~~~gv~~~  169 (181)
                       ..+++...+..  .... ....+++++|+++|.|++++
T Consensus       178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence             12233322210  0000 12467999999999999764

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.73  E-value=4.4e-17  Score=125.81  Aligned_cols=147  Identities=17%  Similarity=0.112  Sum_probs=93.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCc--cc------------c----------------------cCccceeEEEEEECCE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEI--VT------------T----------------------IPTIGFNVETVEYKNI   61 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~--~~------------~----------------------~~~~~~~~~~~~~~~~   61 (181)
                      ++|+++|+.++|||||+++|+...-  ..            .                      .-|....+..+...+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            5899999999999999999964210  00            0                      0123333445566788


Q ss_pred             EEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHH
Q 030192           62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEI  139 (181)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~  139 (181)
                      .+.++||||+++|.......+..+|++++|+|+......+....+  .++...  ..+++++++||+|+.+...  .+++
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~--~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i  156 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS--YIASLL--GIRHVVLAVNKMDLVDYDEEVFENI  156 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH--HHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence            999999999998877666777899999999999754322211111  111111  1346899999999875321  1222


Q ss_pred             HhhhCC--CcccCcceEEEEccccCCCChHH
Q 030192          140 TDKLGL--HSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus       140 ~~~~~~--~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      ...+..  ........+++++||++|.|+++
T Consensus       157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            222210  00111245799999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.73  E-value=3.8e-16  Score=127.84  Aligned_cols=114  Identities=19%  Similarity=0.129  Sum_probs=84.4

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCC--c---cc----------------ccCccceeEEEEEECCEEEEEEEcCCCC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGE--I---VT----------------TIPTIGFNVETVEYKNISFTVWDVGGQD   72 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~---~~----------------~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (181)
                      .++-.+|+++|++|+|||||+++|+...  .   ..                ...|.......+.+.+..+++|||||+.
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~   86 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV   86 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence            4566799999999999999999996421  1   00                0113334455677789999999999999


Q ss_pred             CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      ++...+..+++.+|++++|+|+.+....+. ...|... ..   .++|+++++||+|+..
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA-NR---YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH-HH---cCCCEEEEEECCCCCC
Confidence            888888888999999999999987544332 2333332 22   4689999999999875

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.72  E-value=7.2e-17  Score=125.66  Aligned_cols=151  Identities=18%  Similarity=0.148  Sum_probs=101.5

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCC--c-------------------------cc-------ccCccceeEEEEEEC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------------VT-------TIPTIGFNVETVEYK   59 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~-------------------------~~-------~~~~~~~~~~~~~~~   59 (181)
                      .+..++|+++|+.++|||||+.+|+...  .                         ..       ...|.......+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            3567899999999999999999996511  0                         00       011333444556678


Q ss_pred             CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCccc---H---HHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCC
Q 030192           60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAV-LLVFANKQDLPN  132 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~  132 (181)
                      +..++++|+||+.+|.......+..+|++++|+|+....-   +   ....+-+... ..   .++| +|+++||+|...
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQMIVCINKMDDKT  159 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCeEEEEEEcccccc
Confidence            8899999999999998888888899999999999975320   0   1222222222 22   3554 679999999432


Q ss_pred             ----CCC----HhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192          133 ----AMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus       133 ----~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                          ...    .+++...+....+....++++++|+.+|.|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence                112    233334443333444468899999999999863

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.72  E-value=3.8e-17  Score=127.17  Aligned_cols=150  Identities=16%  Similarity=0.137  Sum_probs=101.3

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCc---------------------------cc-------ccCccceeEEEEEEC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEI---------------------------VT-------TIPTIGFNVETVEYK   59 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~---------------------------~~-------~~~~~~~~~~~~~~~   59 (181)
                      .+..++|+++|+.++|||||+.+|+...-                           .+       ..-|+......+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            35678999999999999999999964110                           00       011334444556668


Q ss_pred             CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHH-------HHHHHHHHHHcCCCCCCC-eEEEEEeCCCCC
Q 030192           60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV-------EARDELHRMLNEDELRDA-VLLVFANKQDLP  131 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-piivv~nK~Dl~  131 (181)
                      +..++++|+||+++|.......+..+|++++|+|+++. .++       ...+.+. ++..   .++ ++|+++||+|+.
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~---~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT---LGVKQMICCCNKMDAT  158 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH---cCCCcEEEEEEcccCC
Confidence            88999999999999999888889999999999999752 121       2222222 2222   355 578899999976


Q ss_pred             CCC--------CHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192          132 NAM--------NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus       132 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      +..        ..+++...+....+....++++++|+++|.|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            211        1223333333333333457899999999999853

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.72  E-value=9.5e-17  Score=121.65  Aligned_cols=155  Identities=19%  Similarity=0.182  Sum_probs=116.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc-----------cc-------ccCccceeEEEE-----EECCEEEEEEEcCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI-----------VT-------TIPTIGFNVETV-----EYKNISFTVWDVGGQ   71 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-----------~~-------~~~~~~~~~~~~-----~~~~~~~~i~D~~g~   71 (181)
                      ++-.+..++.+-..|||||..|++...-           ..       ..-|+..+..++     +++.+.++++|||||
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            4556889999999999999999965220           00       011222222222     235689999999999


Q ss_pred             CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcc
Q 030192           72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSL  148 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~~~~~  148 (181)
                      -+|.......+..|.+.++|+|++..-..+.+.+.+..+-.     +.-+|-|+||+|++...   ...++.+.+++...
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~  161 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS  161 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc
Confidence            99999999999999999999999877666777777766643     57799999999998754   34456666665532


Q ss_pred             cCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       149 ~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                           ..+.+|||+|.|++++++.|++.+..
T Consensus       162 -----dav~~SAKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         162 -----DAVLVSAKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             -----hheeEecccCCCHHHHHHHHHhhCCC
Confidence                 35679999999999999999988743

>TIGR00503 prfC peptide chain release factor 3

Probab=99.72  E-value=4.1e-16  Score=123.41  Aligned_cols=112  Identities=22%  Similarity=0.253  Sum_probs=80.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC--Cccc----------------c-------cCccceeEEEEEECCEEEEEEEcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVT----------------T-------IPTIGFNVETVEYKNISFTVWDVG   69 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~----------------~-------~~~~~~~~~~~~~~~~~~~i~D~~   69 (181)
                      .+..+|+++|++++|||||+++++..  ....                .       ..++......+++.+..+++||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            56789999999999999999998531  1100                0       012222334567789999999999


Q ss_pred             CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      |+.+|......+++.+|++++|+|+++.... ....++ .....   .++|+++++||+|+.
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~-~~~~~---~~~PiivviNKiD~~  145 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLM-EVTRL---RDTPIFTFMNKLDRD  145 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHH-HHHHh---cCCCEEEEEECcccc
Confidence            9998887777788999999999999764221 223333 33333   478999999999985

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.72  E-value=3.1e-16  Score=101.05  Aligned_cols=103  Identities=21%  Similarity=0.328  Sum_probs=70.6

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc--cc--cCccceeEEEEEECCEEEEEEEcCCCCCc---------ccchhhccccc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQNT   85 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~--~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~~   85 (181)
                      +|+++|.+|+|||||+|+|.+....  ..  ..|.......+...+..+.++||||-...         .......+..+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS   80 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence            6899999999999999999986432  22  23444444556678889999999995432         11123334789


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK  127 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK  127 (181)
                      |++++|+|.+++  .......+.+.++    .++|+++|+||
T Consensus        81 d~ii~vv~~~~~--~~~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   81 DLIIYVVDASNP--ITEDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             SEEEEEEETTSH--SHHHHHHHHHHHH----TTSEEEEEEES
T ss_pred             CEEEEEEECCCC--CCHHHHHHHHHHh----cCCCEEEEEcC
Confidence            999999997662  1222223323332    57999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.72  E-value=5.1e-17  Score=115.56  Aligned_cols=159  Identities=24%  Similarity=0.310  Sum_probs=100.6

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCccc----ccCccceeEEEEEE-CCEEEEEEEcCCCCCccc-----chhhccccccEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRP-----LWRHYFQNTQGL   88 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~-----~~~~~~~~~d~~   88 (181)
                      ||+++|+.||||||+.+.+.++..+.    -.+|...+...+.. ....+++||.||+..+-.     .....+++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            79999999999999999998776542    24677777777764 677999999999865433     357778999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcccCc---ceEEEEccc
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQR---HWYIQSTCA  160 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~S~  160 (181)
                      |||+|+.+.+ +.....++...+..  ...+++.+.++++|+|+..+...++..+...   ...+...   .+.++.||-
T Consensus        81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI  159 (232)
T PF04670_consen   81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI  159 (232)
T ss_dssp             EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred             EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence            9999997443 44444444443332  1226788999999999875422222111111   0011111   478999999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030192          161 TSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~  179 (181)
                      .+ ..+-++|..+++.+..
T Consensus       160 ~D-~Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  160 WD-ESLYEAWSKIVQKLIP  177 (232)
T ss_dssp             TS-THHHHHHHHHHHTTST
T ss_pred             cC-cHHHHHHHHHHHHHcc
Confidence            98 5799999999887653

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.71  E-value=2.2e-16  Score=122.86  Aligned_cols=159  Identities=18%  Similarity=0.139  Sum_probs=101.1

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcC------Cc------cc-------ccCccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLG------EI------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKI   74 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~------~~------~~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (181)
                      .+..++|+++|+.++|||||+++|.+.      ..      .+       ...|.......++.++..+.++||||+.+|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            467899999999999999999999632      10      00       111333444455556788999999999888


Q ss_pred             ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-HhHH----HhhhCCCcc
Q 030192           75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEI----TDKLGLHSL  148 (181)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~~~----~~~~~~~~~  148 (181)
                      ..........+|++++|+|+.+...  .........+..   .++| +|+++||+|+.+... .+.+    .+.+....+
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~--~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPM--PQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc--hhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            7766666678999999999975422  222222223332   4677 578899999875322 1112    222211112


Q ss_pred             cCcceEEEEcccc---CCCC-------hHHHHHHHHHHh
Q 030192          149 RQRHWYIQSTCAT---SGEG-------LYEGLDWLSNNI  177 (181)
Q Consensus       149 ~~~~~~~~~~S~~---~~~g-------v~~~~~~i~~~~  177 (181)
                      ....++++.+|+.   +|.|       +.++++.+.+.+
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            2235678888876   4555       677777776654

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=3.6e-16  Score=120.32  Aligned_cols=156  Identities=22%  Similarity=0.215  Sum_probs=111.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccC---ccceeEEEEEE---CCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~---~~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      .+..-|.++|+...|||||+..+.+.......+   |..+--+.+..   ....+.++|||||+-|..+...-.+-+|.+
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            356779999999999999999998877553322   22222233444   345899999999999999998888899999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc----CcceEEEEccccCCC
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR----QRHWYIQSTCATSGE  164 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~  164 (181)
                      ++|+++++.--.+ ..+    -+.+....+.|+++..||+|.++. ....+...+....+.    .....++++||++|+
T Consensus        83 ILVVa~dDGv~pQ-TiE----AI~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532          83 ILVVAADDGVMPQ-TIE----AINHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEEEccCCcchh-HHH----HHHHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            9999997632111 111    122222268999999999999843 334444444333332    245789999999999


Q ss_pred             ChHHHHHHHHHH
Q 030192          165 GLYEGLDWLSNN  176 (181)
Q Consensus       165 gv~~~~~~i~~~  176 (181)
                      |+++|+..+.-.
T Consensus       157 Gi~eLL~~ill~  168 (509)
T COG0532         157 GIDELLELILLL  168 (509)
T ss_pred             CHHHHHHHHHHH
Confidence            999999987653

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.70  E-value=3.1e-16  Score=111.49  Aligned_cols=108  Identities=18%  Similarity=0.133  Sum_probs=77.3

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCc--c----------cc-------cCccceeEEEEEE----------CCEEEEEEEcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEI--V----------TT-------IPTIGFNVETVEY----------KNISFTVWDVG   69 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~--~----------~~-------~~~~~~~~~~~~~----------~~~~~~i~D~~   69 (181)
                      +|+++|+.++|||||+++|+...-  .          ..       ..|+......+.+          .++.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999975321  0          00       0121111122222          27889999999


Q ss_pred             CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      |+.+|......+++.+|++++|+|+.+....+. ...+.....    .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence            999999999999999999999999987655433 233333333    367999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.69  E-value=4.9e-16  Score=113.64  Aligned_cols=158  Identities=23%  Similarity=0.232  Sum_probs=101.1

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEE-ECCEEEEEEEcCCCCCcc-------cchhhccccccE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVE-YKNISFTVWDVGGQDKIR-------PLWRHYFQNTQG   87 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d~   87 (181)
                      .|.++|-||+|||||++.+...++. ..  ..|...+...+. .....|.+-|.||--+..       .....++..|.+
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v  240 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV  240 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence            6889999999999999999887643 11  122222222233 455679999999832211       113334567999


Q ss_pred             EEEEEECCCccc---HHHHHHHHHHHHc-CCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192           88 LIFVVDSNDRDR---VVEARDELHRMLN-EDELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        88 ~i~v~d~~~~~s---~~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      ++.|+|++..+.   .++......++-. ...+.++|.++|+||+|+... +..+++...+....  .+...++ +|+.+
T Consensus       241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~--~~~~~~~-ISa~t  317 (369)
T COG0536         241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL--GWEVFYL-ISALT  317 (369)
T ss_pred             eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc--CCCccee-eehhc
Confidence            999999985442   4444443333322 245567999999999996543 34444444443211  1111222 99999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030192          163 GEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~~~  179 (181)
                      +.|++++...+.+.+.+
T Consensus       318 ~~g~~~L~~~~~~~l~~  334 (369)
T COG0536         318 REGLDELLRALAELLEE  334 (369)
T ss_pred             ccCHHHHHHHHHHHHHH
Confidence            99999999998887654

>cd00066 G-alpha G protein alpha subunit

Probab=99.69  E-value=6.6e-16  Score=115.59  Aligned_cols=134  Identities=26%  Similarity=0.404  Sum_probs=103.4

Q ss_pred             CccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCC
Q 030192           47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL  116 (181)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~  116 (181)
                      ||.|+....+...+..+.+||++|+...++.|.+++.+++++++|+|+++.          ..+.+....+..++.+...
T Consensus       147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~  226 (317)
T cd00066         147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF  226 (317)
T ss_pred             ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence            466777777888899999999999999999999999999999999999864          4677788888899888777


Q ss_pred             CCCeEEEEEeCCCCCCC------------------CCHhHHHhhhCCCc---c--cCcceEEEEccccCCCChHHHHHHH
Q 030192          117 RDAVLLVFANKQDLPNA------------------MNAAEITDKLGLHS---L--RQRHWYIQSTCATSGEGLYEGLDWL  173 (181)
Q Consensus       117 ~~~piivv~nK~Dl~~~------------------~~~~~~~~~~~~~~---~--~~~~~~~~~~S~~~~~gv~~~~~~i  173 (181)
                      .++|+++++||.|+...                  ...++....+...+   .  .+..+..+.++|.+..+++.+|+.+
T Consensus       227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v  306 (317)
T cd00066         227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV  306 (317)
T ss_pred             cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence            88999999999997431                  11122221111110   0  2356677789999999999999998


Q ss_pred             HHHhhhc
Q 030192          174 SNNIASK  180 (181)
Q Consensus       174 ~~~~~~~  180 (181)
                      .+.+..+
T Consensus       307 ~~~i~~~  313 (317)
T cd00066         307 KDIILQN  313 (317)
T ss_pred             HHHHHHH
Confidence            8877653

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>smart00275 G_alpha G protein alpha subunit

Probab=99.69  E-value=9e-16  Score=115.76  Aligned_cols=134  Identities=25%  Similarity=0.415  Sum_probs=102.3

Q ss_pred             CccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCC
Q 030192           47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL  116 (181)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~  116 (181)
                      ||.|+....+...+..+.+||.+|+...++.|.+++.+++++++|+|+++.          ..+.+....+..++.....
T Consensus       170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~  249 (342)
T smart00275      170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF  249 (342)
T ss_pred             CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence            466677777788889999999999999999999999999999999999863          4677888889999988777


Q ss_pred             CCCeEEEEEeCCCCCCC-----------------CCHhHHHhhhC-----CCcc-cCcceEEEEccccCCCChHHHHHHH
Q 030192          117 RDAVLLVFANKQDLPNA-----------------MNAAEITDKLG-----LHSL-RQRHWYIQSTCATSGEGLYEGLDWL  173 (181)
Q Consensus       117 ~~~piivv~nK~Dl~~~-----------------~~~~~~~~~~~-----~~~~-~~~~~~~~~~S~~~~~gv~~~~~~i  173 (181)
                      .++|+++++||.|+...                 ...+.....+.     ...- .+..+..+.+||.+..++..+|+.+
T Consensus       250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v  329 (342)
T smart00275      250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV  329 (342)
T ss_pred             cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence            88999999999998531                 11112221111     1000 1245677789999999999999988


Q ss_pred             HHHhhhc
Q 030192          174 SNNIASK  180 (181)
Q Consensus       174 ~~~~~~~  180 (181)
                      .+.+..+
T Consensus       330 ~~~I~~~  336 (342)
T smart00275      330 KDIILQR  336 (342)
T ss_pred             HHHHHHH
Confidence            8776643

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.68  E-value=5.1e-16  Score=108.98  Aligned_cols=160  Identities=14%  Similarity=0.083  Sum_probs=98.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc-----cCccceeEEEEEECCEEEEEEEcCCCCCccc-------c----hhhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP-------L----WRHY   81 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~----~~~~   81 (181)
                      ++|+++|.+|+|||||+|++++......     ..|...........+..+.++||||-.+...       .    ....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            4799999999999999999998764321     2344455555666888999999999543321       1    1223


Q ss_pred             cccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcccCcceEEEE
Q 030192           82 FQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQRHWYIQS  157 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~  157 (181)
                      ..+.|++++|+++.... ......+++...+...  .-.+++++.|++|.......++......   ....+.++-.++.
T Consensus        81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            45789999999987621 1233333444433321  1257899999999765443333222111   0011122222222


Q ss_pred             c-----cccCCCChHHHHHHHHHHhhh
Q 030192          158 T-----CATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       158 ~-----S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      .     |+..+.+++++++.+.+.+.+
T Consensus       159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         159 FNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            2     256678899999999887765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.67  E-value=2e-15  Score=112.54  Aligned_cols=77  Identities=27%  Similarity=0.393  Sum_probs=54.0

Q ss_pred             EEEEcCCCCChHHHHhhHhcCCcc-------cccCccceeEEEE-------------------EE-CCEEEEEEEcCCC-
Q 030192           20 ILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVETV-------------------EY-KNISFTVWDVGGQ-   71 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~~~~-------~~~~~~~~~~~~~-------------------~~-~~~~~~i~D~~g~-   71 (181)
                      |+++|.||+|||||+|++++....       +..|+.+..+...                   .. ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999987632       2244444433211                   11 3468999999996 


Q ss_pred             ---CCcccch---hhccccccEEEEEEECCC
Q 030192           72 ---DKIRPLW---RHYFQNTQGLIFVVDSND   96 (181)
Q Consensus        72 ---~~~~~~~---~~~~~~~d~~i~v~d~~~   96 (181)
                         +++..+.   ...++++|++++|+|++.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               3344332   234789999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK12739 elongation factor G; Reviewed

Probab=99.66  E-value=1.8e-15  Score=123.86  Aligned_cols=114  Identities=19%  Similarity=0.121  Sum_probs=84.1

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCC-----c---c-------------cccCccceeEEEEEECCEEEEEEEcCCCC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGE-----I---V-------------TTIPTIGFNVETVEYKNISFTVWDVGGQD   72 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-----~---~-------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (181)
                      .++..+|+++|++++|||||+++|+...     .   .             ...-|.......+.+.+..++++||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            3566799999999999999999996421     0   0             01124444456677889999999999998


Q ss_pred             CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      ++...+...++.+|++++|+|+......+. ...+... ..   .++|+++++||+|+..
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~-~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA-DK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH-HH---cCCCEEEEEECCCCCC
Confidence            888888888899999999999976533222 2223332 22   4689999999999875

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.66  E-value=9e-16  Score=119.37  Aligned_cols=163  Identities=15%  Similarity=0.142  Sum_probs=103.2

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCccc---c---cCc--cceeEE---------------EEEE-----------
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT---T---IPT--IGFNVE---------------TVEY-----------   58 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~---~~~--~~~~~~---------------~~~~-----------   58 (181)
                      ..+-.++|+++|+..+|||||+.+|.+.....   .   .-|  .|+...               ....           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            34667899999999999999999998743211   1   111  111110               0000           


Q ss_pred             -----CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           59 -----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        59 -----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                           ....+.++|+||+++|.+........+|++++|+|+..........+.+. .+...  .-.++|+++||+|+.+.
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~  186 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKE  186 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCH
Confidence                 02368999999999988777777789999999999986311111122222 22211  12568999999999764


Q ss_pred             CCHhHHHhhhCC--CcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          134 MNAAEITDKLGL--HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       134 ~~~~~~~~~~~~--~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ...++..+.+..  ........+++++||++|.|++++++.|.+.+.
T Consensus       187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            322222221110  001124568999999999999999999986553

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=2.5e-15  Score=114.44  Aligned_cols=164  Identities=18%  Similarity=0.185  Sum_probs=104.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccc----eeEEEEEECCEEEEEEEcCCCCCcc---------cchhhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVEYKNISFTVWDVGGQDKIR---------PLWRHY   81 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~   81 (181)
                      +..++|+++|+||+|||||+|.|.+.+..-..|..|    .....++..++++.+.||+|-.+-.         ......
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            467999999999999999999999998654433333    3345677899999999999954311         112333


Q ss_pred             cccccEEEEEEECC--CcccHHHHHHHHHHHHc-----CCCCCCCeEEEEEeCCCCCCCC-CHhH-HHhhhCCCcccCcc
Q 030192           82 FQNTQGLIFVVDSN--DRDRVVEARDELHRMLN-----EDELRDAVLLVFANKQDLPNAM-NAAE-ITDKLGLHSLRQRH  152 (181)
Q Consensus        82 ~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~-----~~~~~~~piivv~nK~Dl~~~~-~~~~-~~~~~~~~~~~~~~  152 (181)
                      .+.+|++++|+|+.  ..++-..+.+.+...-.     .+...+.|++++.||.|+.... +... ....... ......
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~  424 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF  424 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence            46799999999993  32222222232322211     1223457899999999987641 1111 0011111 111112


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          153 WYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       153 ~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      -.+.++|+++++|++++...+...+..
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~  451 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVER  451 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence            235569999999999999888876543

>PRK00007 elongation factor G; Reviewed

Probab=99.65  E-value=4.4e-15  Score=121.55  Aligned_cols=114  Identities=17%  Similarity=0.077  Sum_probs=81.9

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcC--Cc------c-------------cccCccceeEEEEEECCEEEEEEEcCCCC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLG--EI------V-------------TTIPTIGFNVETVEYKNISFTVWDVGGQD   72 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~------~-------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (181)
                      .++-.+|+++|++|+|||||+++|+..  ..      .             ...-|.......+.+.+..++++||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            456679999999999999999999631  10      0             00113333345677789999999999998


Q ss_pred             CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      ++.......++.+|++++|+|+...-..+. ...+.....    .++|.++++||+|+.+
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence            877777777889999999999865433222 223333333    4688999999999874

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=6e-16  Score=115.79  Aligned_cols=150  Identities=21%  Similarity=0.226  Sum_probs=102.1

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCC----------------------c---------c---cccCccceeEEEEEEC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGE----------------------I---------V---TTIPTIGFNVETVEYK   59 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~----------------------~---------~---~~~~~~~~~~~~~~~~   59 (181)
                      .+..++++++|+..+|||||+-+|+.+-                      +         .   +..-|+...+..++.+
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            3567999999999999999999996421                      0         0   0112455555667778


Q ss_pred             CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc---cH-----HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV-----VEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~-----~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      .+.+.++|+||+.+|-........++|+.|+|+|+.+.+   ++     ..-...+...+.     -..+|+++||+|+.
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~lIVavNKMD~v  158 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQLIVAVNKMDLV  158 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----CceEEEEEEccccc
Confidence            899999999999998888888888999999999998653   11     111112222222     24578999999998


Q ss_pred             CC--CCHhH----HHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192          132 NA--MNAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus       132 ~~--~~~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      +-  ...++    +...+....+...+++++++|+..|.|+.+
T Consensus       159 ~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         159 SWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             ccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            62  12222    222222333344468899999999999853

>PRK12740 elongation factor G; Reviewed

Probab=99.64  E-value=7.8e-15  Score=120.06  Aligned_cols=105  Identities=19%  Similarity=0.152  Sum_probs=78.1

Q ss_pred             EcCCCCChHHHHhhHhcCCc--------------c-------cccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhc
Q 030192           23 VGLDAAGKTTILYKLKLGEI--------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY   81 (181)
Q Consensus        23 ~G~~~~GKSsli~~l~~~~~--------------~-------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   81 (181)
                      +|++|+|||||+++|+...-              .       ....|++.....+.+.++.+++|||||+.++...+..+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            59999999999999954210              0       01224445556677889999999999998888888888


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      ++.+|++++|+|++........ ..|.....    .++|+++++||+|...
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCC
Confidence            8999999999999876554332 33333322    4689999999999874

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.63  E-value=2.1e-15  Score=107.48  Aligned_cols=165  Identities=18%  Similarity=0.268  Sum_probs=106.0

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccc---cCcccee-EEEEEECCEEEEEEEcCCCCC-------cccchh
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFN-VETVEYKNISFTVWDVGGQDK-------IRPLWR   79 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~-~~~~~~~~~~~~i~D~~g~~~-------~~~~~~   79 (181)
                      ++.....++|+++|.+|+||||+||++++....+.   ..+.... +....++...+.+||+||-.+       +++...
T Consensus        33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~  112 (296)
T COG3596          33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYR  112 (296)
T ss_pred             hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHH
Confidence            34457889999999999999999999997553321   1122211 222334557899999999554       666678


Q ss_pred             hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC------------CHhHHHhhh-C--
Q 030192           80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------------NAAEITDKL-G--  144 (181)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~-~--  144 (181)
                      .++.+.|.+++++++.++.- .--...+.+++...  .+.++++++|.+|...+-            ..++..+.. +  
T Consensus       113 d~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~  189 (296)
T COG3596         113 DYLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL  189 (296)
T ss_pred             HHhhhccEEEEeccCCCccc-cCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence            88899999999999976532 11122233333321  248899999999976431            111111100 0  


Q ss_pred             CCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          145 LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       145 ~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      ..++ +.-.+++..|...+.|++++...++..+..
T Consensus       190 ~~~~-q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         190 GRLF-QEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HHHH-hhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence            0111 123356677889999999999999987643

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=1.5e-14  Score=111.50  Aligned_cols=156  Identities=19%  Similarity=0.161  Sum_probs=113.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc---cCccceeEEEEEE-CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      .+..-|.++|+...|||||++.|.+......   .-|..+--+.+.. .+..+.+.|||||.-|..+...-.+-+|.+++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            4777899999999999999999988775432   2233332233332 56789999999999999999988899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc----cCcceEEEEccccCCCCh
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~~~gv  166 (181)
                      |+.+.+.--     ..-.+.+++....+.|+|+.+||+|.+.. ..+.+.+.+-...+    -..+++++++||++|.|+
T Consensus       231 VVAadDGVm-----pQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl  304 (683)
T KOG1145|consen  231 VVAADDGVM-----PQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL  304 (683)
T ss_pred             EEEccCCcc-----HhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence            999976321     11222333444478999999999998754 44555555533333    235789999999999999


Q ss_pred             HHHHHHHHHH
Q 030192          167 YEGLDWLSNN  176 (181)
Q Consensus       167 ~~~~~~i~~~  176 (181)
                      +.+-+.+.-.
T Consensus       305 ~~L~eaill~  314 (683)
T KOG1145|consen  305 DLLEEAILLL  314 (683)
T ss_pred             HHHHHHHHHH
Confidence            9988877643

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.62  E-value=8.7e-16  Score=96.61  Aligned_cols=138  Identities=21%  Similarity=0.224  Sum_probs=94.5

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCC----CCCcccchhhccccccEEEEEEEC
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG----QDKIRPLWRHYFQNTQGLIFVVDS   94 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----~~~~~~~~~~~~~~~d~~i~v~d~   94 (181)
                      +++++|..|+|||||.+.+.+.... +..|..+     ++.+  =-.+||||    +.+++.........+|.+++|-.+
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l-ykKTQAv-----e~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a   74 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL-YKKTQAV-----EFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA   74 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh-hccccee-----eccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence            7899999999999999999987753 1222222     1111  02579999    344444455566789999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192           95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS  174 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~  174 (181)
                      +++++.  ....+..+      ..+|+|-+++|.|+++.+..+..++.+.....+    ++|++|+.++.|+++++.++.
T Consensus        75 nd~~s~--f~p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~----~IF~~s~~d~~gv~~l~~~L~  142 (148)
T COG4917          75 NDPESR--FPPGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAGAE----PIFETSAVDNQGVEELVDYLA  142 (148)
T ss_pred             cCcccc--CCcccccc------cccceEEEEecccccchHhHHHHHHHHHHcCCc----ceEEEeccCcccHHHHHHHHH
Confidence            887553  22222222      346699999999999755554444444333222    699999999999999999886


Q ss_pred             HH
Q 030192          175 NN  176 (181)
Q Consensus       175 ~~  176 (181)
                      ..
T Consensus       143 ~~  144 (148)
T COG4917         143 SL  144 (148)
T ss_pred             hh
Confidence            53

>cd01850 CDC_Septin CDC/Septin

Probab=99.60  E-value=1.3e-14  Score=106.63  Aligned_cols=113  Identities=15%  Similarity=0.222  Sum_probs=70.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccc-----------cCccceeEE--EEEECC--EEEEEEEcCCCCCccc----
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRP----   76 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~----   76 (181)
                      -.++|+++|++|+|||||+|++.+..+...           .+|.+....  .+...+  +.+.+|||||-.+...    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            358999999999999999999998775422           223333332  233333  6799999999432211    


Q ss_pred             ----------------------chhhccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           77 ----------------------LWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        77 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                                            .....+.  .+|+++|+++.+. ..+......+...+..    ++|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLSK----RVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHhc----cCCEEEEEECCCcCC
Confidence                                  0101222  5788888888764 2232332222233332    589999999999865


Q ss_pred             C
Q 030192          133 A  133 (181)
Q Consensus       133 ~  133 (181)
                      .
T Consensus       158 ~  158 (276)
T cd01850         158 P  158 (276)
T ss_pred             H
Confidence            3

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.59  E-value=2.5e-15  Score=114.60  Aligned_cols=173  Identities=15%  Similarity=0.161  Sum_probs=117.8

Q ss_pred             HHHHHHhhh--cccccEEEEEcCCCCChHHHHhhHhcCCcc-c-c-cCccceeEEEEEECCEEEEEEEcCCCCCcc----
Q 030192            5 FTKLFSRLF--AKKEMRILMVGLDAAGKTTILYKLKLGEIV-T-T-IPTIGFNVETVEYKNISFTVWDVGGQDKIR----   75 (181)
Q Consensus         5 ~~~~~~~~~--~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----   75 (181)
                      ..+.+.+++  .....+++++|-||+|||||+|.+...... . + .+|.+.-...+.+.-..++++||||-.+..    
T Consensus       154 Vrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdr  233 (620)
T KOG1490|consen  154 VRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDR  233 (620)
T ss_pred             HHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhh
Confidence            345566666  467889999999999999999999876643 1 1 345555455566666789999999943211    


Q ss_pred             cc-----hhhccccccEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc
Q 030192           76 PL-----WRHYFQNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL  148 (181)
Q Consensus        76 ~~-----~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~  148 (181)
                      +.     ......--.+++|+.|++..+  |.......+..+-.  -..++|+|+|+||+|+-.++.+.+-.+.+-....
T Consensus       234 N~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKp--LFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~  311 (620)
T KOG1490|consen  234 NIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLNKIDAMRPEDLDQKNQELLQTII  311 (620)
T ss_pred             hHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHH--HhcCCceEEEeecccccCccccCHHHHHHHHHHH
Confidence            10     111112356789999998765  45666666666533  3358999999999998877655544443322222


Q ss_pred             cCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       149 ~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      ...+++++++|+.+.+||-++-...++.++.
T Consensus       312 ~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa  342 (620)
T KOG1490|consen  312 DDGNVKVVQTSCVQEEGVMDVRTTACEALLA  342 (620)
T ss_pred             hccCceEEEecccchhceeeHHHHHHHHHHH
Confidence            2334689999999999999988888877653

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.58  E-value=7.7e-14  Score=107.02  Aligned_cols=78  Identities=27%  Similarity=0.398  Sum_probs=53.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-c------cCccceeEEEE-------------------E-ECCEEEEEEEcCC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-T------IPTIGFNVETV-------------------E-YKNISFTVWDVGG   70 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~------~~~~~~~~~~~-------------------~-~~~~~~~i~D~~g   70 (181)
                      ++|+++|.||+|||||+|++++..... .      .|+.+......                   . .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            689999999999999999999876531 1      23333322110                   0 1236789999999


Q ss_pred             C----CCcccchhh---ccccccEEEEEEECC
Q 030192           71 Q----DKIRPLWRH---YFQNTQGLIFVVDSN   95 (181)
Q Consensus        71 ~----~~~~~~~~~---~~~~~d~~i~v~d~~   95 (181)
                      -    .....+-..   .++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    223333223   378999999999996

>PRK09866 hypothetical protein; Provisional

Probab=99.57  E-value=9.5e-14  Score=109.92  Aligned_cols=112  Identities=14%  Similarity=0.135  Sum_probs=69.6

Q ss_pred             EEEEEEEcCCCCCc-----ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030192           61 ISFTVWDVGGQDKI-----RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN  135 (181)
Q Consensus        61 ~~~~i~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  135 (181)
                      ..+.++||||-...     .......+..+|++++|+|.....+...  ..+...++... .+.|+++|+||+|+.+...
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence            45789999996432     2223446789999999999976433322  22333333311 1359999999999865322


Q ss_pred             --HhHHHhhhCCC--cccCcceEEEEccccCCCChHHHHHHHHH
Q 030192          136 --AAEITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus       136 --~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                        .+.+.......  ...-.-..++++||++|.|++++++.+..
T Consensus       307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence              33333322100  00001225889999999999999998876

>PRK13768 GTPase; Provisional

Probab=99.56  E-value=1.6e-14  Score=105.00  Aligned_cols=117  Identities=17%  Similarity=0.149  Sum_probs=73.9

Q ss_pred             EEEEEEEcCCCCCc---ccchhhcccc-----ccEEEEEEECCCcccHHH-HHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           61 ISFTVWDVGGQDKI---RPLWRHYFQN-----TQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        61 ~~~~i~D~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      ..+.+||+||+.+.   +..+..+.+.     .+++++|+|+........ ...++........ .++|+++|+||+|+.
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~  175 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLL  175 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhc
Confidence            36899999997553   3333323322     899999999965443322 2222222211111 479999999999998


Q ss_pred             CCCCHhHHHhhhCC-----------------------CcccC--cceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          132 NAMNAAEITDKLGL-----------------------HSLRQ--RHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       132 ~~~~~~~~~~~~~~-----------------------~~~~~--~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      +..+.++....+..                       ..+++  ...+++++|++++.|++++++++.+.+.
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            76544444333321                       00111  2247899999999999999999988764

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.56  E-value=7.3e-14  Score=103.98  Aligned_cols=134  Identities=26%  Similarity=0.464  Sum_probs=102.6

Q ss_pred             cCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc----------cHHHHHHHHHHHHcCCC
Q 030192           46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDE  115 (181)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~  115 (181)
                      .||.|+....+...+..+.++|.+||...++.|.+++.+++++++|+++++-+          .+.+....+..++.+..
T Consensus       180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~  259 (354)
T KOG0082|consen  180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW  259 (354)
T ss_pred             cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence            45888888899999999999999999999999999999999999999987422          34555667888899888


Q ss_pred             CCCCeEEEEEeCCCCCCC-----------------CCHhHHHhhhC-----CCcccCcceEEEEccccCCCChHHHHHHH
Q 030192          116 LRDAVLLVFANKQDLPNA-----------------MNAAEITDKLG-----LHSLRQRHWYIQSTCATSGEGLYEGLDWL  173 (181)
Q Consensus       116 ~~~~piivv~nK~Dl~~~-----------------~~~~~~~~~~~-----~~~~~~~~~~~~~~S~~~~~gv~~~~~~i  173 (181)
                      ..+.++|+++||.|+..+                 ...++....+.     +..-....+.+..++|.+..+|+.+|..+
T Consensus       260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av  339 (354)
T KOG0082|consen  260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV  339 (354)
T ss_pred             cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence            889999999999999641                 11222222111     11111145667778999999999999998


Q ss_pred             HHHhhh
Q 030192          174 SNNIAS  179 (181)
Q Consensus       174 ~~~~~~  179 (181)
                      .+.+..
T Consensus       340 ~d~Ii~  345 (354)
T KOG0082|consen  340 TDTIIQ  345 (354)
T ss_pred             HHHHHH
Confidence            887754

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.54  E-value=7.6e-14  Score=114.77  Aligned_cols=113  Identities=21%  Similarity=0.116  Sum_probs=79.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC---------------Cccc----ccCccceeE----EEEEECCEEEEEEEcCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG---------------EIVT----TIPTIGFNV----ETVEYKNISFTVWDVGGQ   71 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~---------------~~~~----~~~~~~~~~----~~~~~~~~~~~i~D~~g~   71 (181)
                      ++..+|+++|+.++|||||+++|+..               .+..    ...|+....    ..+.+.++.+++|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            45679999999999999999999752               1111    111333222    124567899999999999


Q ss_pred             CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      .+|......+++.+|++++|+|+......+. ...+.....    .++|.++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence            9998888888999999999999976322221 222322222    3577889999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.53  E-value=4.9e-14  Score=105.31  Aligned_cols=107  Identities=16%  Similarity=0.114  Sum_probs=69.6

Q ss_pred             CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---
Q 030192           59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---  135 (181)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---  135 (181)
                      .++.+.++||+|..+-...   ....+|.+++|.+....+.++....-..+         ..-++|+||+|+.....   
T Consensus       147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E---------~aDIiVVNKaDl~~~~~a~~  214 (332)
T PRK09435        147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIME---------LADLIVINKADGDNKTAARR  214 (332)
T ss_pred             cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhh---------hhheEEeehhcccchhHHHH
Confidence            3578999999997633322   45679999999875445555443321111         22389999999876432   


Q ss_pred             -HhHHHhhhCCCccc--CcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          136 -AAEITDKLGLHSLR--QRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       136 -~~~~~~~~~~~~~~--~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                       ..++...+....-+  .+..+++.+||+++.|++++++.+.+.+
T Consensus       215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~  259 (332)
T PRK09435        215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR  259 (332)
T ss_pred             HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence             22344444332111  2334789999999999999999998764

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.52  E-value=3.6e-14  Score=102.01  Aligned_cols=109  Identities=19%  Similarity=0.141  Sum_probs=57.9

Q ss_pred             EEEEEEcCCCCCcccchhhcc--------ccccEEEEEEECCCcccHHHHHH----HHHHHHcCCCCCCCeEEEEEeCCC
Q 030192           62 SFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSNDRDRVVEARD----ELHRMLNEDELRDAVLLVFANKQD  129 (181)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~----~~~~~~~~~~~~~~piivv~nK~D  129 (181)
                      .+.++|||||.++...+....        ...-++++++|+....+......    .....++    .+.|.|.|+||+|
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D  167 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID  167 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence            689999999987655444333        34567888999865443222222    2222333    4799999999999


Q ss_pred             CCCCC---------C-----------Hh----HHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          130 LPNAM---------N-----------AA----EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       130 l~~~~---------~-----------~~----~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      +.+..         .           ..    ++.+.+...   ..-..++.+|+++++|+++++..+.+++
T Consensus       168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~---~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDF---GLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCC---SSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhc---CCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            98621         0           01    111111111   1112688999999999999999887764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.52  E-value=6.6e-14  Score=99.35  Aligned_cols=160  Identities=14%  Similarity=0.096  Sum_probs=93.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc-----cCccceeEEEEEECCEEEEEEEcCCCCCcc-------cch----hhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLW----RHY   81 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~----~~~   81 (181)
                      ++|+++|.+||||||++|.+++......     ..|...........+..+.++||||-.+..       ...    ...
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            4899999999999999999998875422     225555566667889999999999943211       111    122


Q ss_pred             cccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---C-CcccCcceEEE
Q 030192           82 FQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---L-HSLRQRHWYIQ  156 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~-~~~~~~~~~~~  156 (181)
                      ....|++++|++..... .-.....++..++....+  .-++||.|..|...+...++..+...   + ...+.++-.|.
T Consensus        81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~  158 (212)
T PF04548_consen   81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH  158 (212)
T ss_dssp             TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence            35699999999997432 223444556666554222  35888899998766554433322110   0 11122232344


Q ss_pred             Ecccc------CCCChHHHHHHHHHHhhh
Q 030192          157 STCAT------SGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       157 ~~S~~------~~~gv~~~~~~i~~~~~~  179 (181)
                      ..+.+      ....+.++++.+-+.+.+
T Consensus       159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~  187 (212)
T PF04548_consen  159 VFNNKTKDKEKDESQVSELLEKIEEMVQE  187 (212)
T ss_dssp             ECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence            44444      234578888877776654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.51  E-value=2.8e-13  Score=113.55  Aligned_cols=144  Identities=22%  Similarity=0.180  Sum_probs=89.5

Q ss_pred             CChHHHHhhHhcCCcccccC---ccceeEEEEEEC------------------CEEEEEEEcCCCCCcccchhhcccccc
Q 030192           28 AGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK------------------NISFTVWDVGGQDKIRPLWRHYFQNTQ   86 (181)
Q Consensus        28 ~GKSsli~~l~~~~~~~~~~---~~~~~~~~~~~~------------------~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (181)
                      ++||||++.+.+.......+   |..+-...+...                  .-.+.+|||||++.|..........+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            45999999998776543211   222211222211                  113899999999999888777788899


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------------------HhHHHh-------
Q 030192           87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------------------AAEITD-------  141 (181)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------------------~~~~~~-------  141 (181)
                      ++++|+|+++.-.-+  .......+..   .++|+++++||+|+.....                  ..++..       
T Consensus       552 ivlLVVDa~~Gi~~q--T~e~I~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~  626 (1049)
T PRK14845        552 LAVLVVDINEGFKPQ--TIEAINILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIG  626 (1049)
T ss_pred             EEEEEEECcccCCHh--HHHHHHHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence            999999998631111  1111122222   3689999999999864211                  111110       


Q ss_pred             hhCCCcc----------cCcceEEEEccccCCCChHHHHHHHHHH
Q 030192          142 KLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNN  176 (181)
Q Consensus       142 ~~~~~~~----------~~~~~~~~~~S~~~~~gv~~~~~~i~~~  176 (181)
                      .+....+          ....++++++||++|+|+++++..+...
T Consensus       627 ~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        627 KLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             HHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence            0111111          1246789999999999999999887643

>cd01882 BMS1 Bms1

Probab=99.50  E-value=2e-13  Score=97.69  Aligned_cols=143  Identities=12%  Similarity=0.035  Sum_probs=85.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      .....|+++|++|+|||||++.+.+..... .....+. +......+..+.++|+||..  .. .....+.+|++++|+|
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllviD  112 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLLID  112 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEEEe
Confidence            456789999999999999999998653211 1111221 11233467789999999864  22 2334578999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-HhHHHhhhCCCcc--cCcceEEEEccccCCCCh
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEITDKLGLHSL--RQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~S~~~~~gv  166 (181)
                      ++......  ...+...+..   .+.| +++|+||+|+.+... .++....+...+.  .-.+.+++.+||++...+
T Consensus       113 a~~~~~~~--~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~  184 (225)
T cd01882         113 ASFGFEME--TFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY  184 (225)
T ss_pred             cCcCCCHH--HHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence            97543322  2223333332   3466 456999999874321 2222222211111  012357889999986443

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.50  E-value=6.7e-13  Score=93.12  Aligned_cols=104  Identities=17%  Similarity=0.190  Sum_probs=64.3

Q ss_pred             EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhH
Q 030192           61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAE  138 (181)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~  138 (181)
                      ....++++.|..-.....+   .-+|.++.|+|+.+.++...   .....+.      ..-++++||+|+.+.  ...+.
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~  159 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGGPGIT------RSDLLVINKIDLAPMVGADLGV  159 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhHhHhh------hccEEEEEhhhccccccccHHH
Confidence            4667888888422222222   12688999999976544321   1111111      123899999999853  23333


Q ss_pred             HHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      +.+.....   +.+.+++++|+++|+|++++++++.+.+.-
T Consensus       160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~  197 (199)
T TIGR00101       160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYALL  197 (199)
T ss_pred             HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            33333221   234579999999999999999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.49  E-value=4.7e-13  Score=96.81  Aligned_cols=117  Identities=10%  Similarity=0.102  Sum_probs=75.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc----cCccceeEEEEEECCEEEEEEEcCCCCCccc---c-------hhh
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP---L-------WRH   80 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~-------~~~   80 (181)
                      ...++|+++|.+|+|||||+|++++......    ..|...........+..+.++||||-.+...   .       ...
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~  108 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR  108 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence            5779999999999999999999999765322    2233334444456778999999999654410   1       122


Q ss_pred             ccc--cccEEEEEEECCCcc-cHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           81 YFQ--NTQGLIFVVDSNDRD-RVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        81 ~~~--~~d~~i~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      ++.  ..|++++|..++... ...  .+.+.+.+.+....  -.++++|.||+|...+
T Consensus       109 ~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p  164 (249)
T cd01853         109 YLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCCC
Confidence            332  578888887665321 222  34444444443211  1469999999998654

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.49  E-value=2e-13  Score=99.51  Aligned_cols=163  Identities=15%  Similarity=0.138  Sum_probs=110.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE----CCEEEEEEEcCCCCCcccchhhccccc----cE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNT----QG   87 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~----d~   87 (181)
                      ..-+|+++|+.|+||||||.++.+.+........++.+-.+..    +-.++.+|-..|+..+..+....+...    -.
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl  130 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL  130 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence            4579999999999999999999988844444445554444433    335789999999888877776665532    46


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCC-----------------------------------------------------
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNED-----------------------------------------------------  114 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------------------------------------------------  114 (181)
                      +|++.|+++|+.+.+..+.|...+.++                                                     
T Consensus       131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll  210 (473)
T KOG3905|consen  131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL  210 (473)
T ss_pred             EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence            778899999987766555444332110                                                     


Q ss_pred             --------CCCCCeEEEEEeCCCCCCCCCHh--------HHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          115 --------ELRDAVLLVFANKQDLPNAMNAA--------EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       115 --------~~~~~piivv~nK~Dl~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                              ..-++|++||+||+|...-.+.+        ++-+..-..|.-+.+...+.+|+|...|++-+..+|+..++
T Consensus       211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y  290 (473)
T KOG3905|consen  211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY  290 (473)
T ss_pred             ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence                    00235699999999985421111        11111112222345677889999999999999999998764

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.48  E-value=5.8e-13  Score=101.21  Aligned_cols=159  Identities=18%  Similarity=0.241  Sum_probs=112.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC--cccc-------------cCccceeE----EEEEECCEEEEEEEcCCCCCccc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE--IVTT-------------IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRP   76 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~-------------~~~~~~~~----~~~~~~~~~~~i~D~~g~~~~~~   76 (181)
                      .-.+|+|+.+...|||||++.|+.+.  |.+.             ...-|++.    ..+.+.++.++++|||||.+|-.
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            34689999999999999999997643  2111             11222332    34678899999999999999999


Q ss_pred             chhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC-----cccCc
Q 030192           77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----SLRQR  151 (181)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~  151 (181)
                      .....+.=.|++++++|+... ......-.+...+.    .+.+-|+|+||+|.++....+-+.+.+.+.     .-.+.
T Consensus        84 EVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL  158 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL  158 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence            999999999999999999752 22333444444444    366678999999998765433333333211     12457


Q ss_pred             ceEEEEccccCCC----------ChHHHHHHHHHHhhh
Q 030192          152 HWYIQSTCATSGE----------GLYEGLDWLSNNIAS  179 (181)
Q Consensus       152 ~~~~~~~S~~~~~----------gv~~~~~~i~~~~~~  179 (181)
                      +++++..|+..|.          ++..+|+.|++.+..
T Consensus       159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            8888889998864          578888888887643

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.47  E-value=2.7e-13  Score=96.68  Aligned_cols=150  Identities=17%  Similarity=0.207  Sum_probs=94.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC------c--ccccCcc---------------------ceeEEEEE--------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE------I--VTTIPTI---------------------GFNVETVE--------   57 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~------~--~~~~~~~---------------------~~~~~~~~--------   57 (181)
                      .+...|+|.|+||+|||||++.|...-      .  ....|+.                     +.-+..+.        
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl  106 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL  106 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence            377899999999999999999995311      0  0111111                     11112221        


Q ss_pred             ------------ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030192           58 ------------YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA  125 (181)
Q Consensus        58 ------------~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~  125 (181)
                                  ..++.+.+++|.|--+-+-.   ...-+|.+++|....-.+..+..+.-+.++..         ++|+
T Consensus       107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~vV  174 (266)
T PF03308_consen  107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFVV  174 (266)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEEE
T ss_pred             cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEEE
Confidence                        13577899999875433322   33569999999999878888777777777755         9999


Q ss_pred             eCCCCCCCC-CHhHHHhhhCCCc--ccCcceEEEEccccCCCChHHHHHHHHHH
Q 030192          126 NKQDLPNAM-NAAEITDKLGLHS--LRQRHWYIQSTCATSGEGLYEGLDWLSNN  176 (181)
Q Consensus       126 nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gv~~~~~~i~~~  176 (181)
                      ||.|..... ...++...+.+..  ...+..+++.|||.++.|++++++.|.+.
T Consensus       175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~  228 (266)
T PF03308_consen  175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH  228 (266)
T ss_dssp             E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            999965432 2334455444322  23355689999999999999999988763

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.46  E-value=3.3e-13  Score=99.31  Aligned_cols=148  Identities=18%  Similarity=0.116  Sum_probs=100.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc------------c------------------------cccCccceeEEEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------V------------------------TTIPTIGFNVETVEY   58 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~------------~------------------------~~~~~~~~~~~~~~~   58 (181)
                      +..++++.+|+..-||||||-||+.+.-            .                        +..-|+...+..+.-
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            4568999999999999999999976320            0                        011244455666677


Q ss_pred             CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CH
Q 030192           59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NA  136 (181)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~  136 (181)
                      ++.+|.+-|||||++|.+-...-...||+.|+++|+  +..+.+....-.-+....  .-..+++.+||+||.+-.  ..
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHH
Confidence            889999999999999988777777889999999999  545544433322222211  124578889999998732  23


Q ss_pred             hHHHhhhCCCccc---CcceEEEEccccCCCChH
Q 030192          137 AEITDKLGLHSLR---QRHWYIQSTCATSGEGLY  167 (181)
Q Consensus       137 ~~~~~~~~~~~~~---~~~~~~~~~S~~~~~gv~  167 (181)
                      +++...+. .++.   -....++++||..|.||-
T Consensus       160 ~~I~~dy~-~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         160 EAIVADYL-AFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHH-HHHHHcCCCcceEEechhccCCccc
Confidence            34443332 1121   123478999999999873

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.46  E-value=3.3e-12  Score=94.07  Aligned_cols=116  Identities=13%  Similarity=0.180  Sum_probs=73.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccCccc--eeEEEEEECCEEEEEEEcCCCCCcccc-------hhhcc-
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPL-------WRHYF-   82 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~-   82 (181)
                      ...++|+++|.+|+||||++|++++....  +..++.+  .........+..+.++||||..+....       ...++ 
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~  115 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL  115 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence            46789999999999999999999987642  2222222  222333457889999999996643221       11111 


Q ss_pred             -ccccEEEEEEECCC--cccH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           83 -QNTQGLIFVVDSND--RDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        83 -~~~d~~i~v~d~~~--~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                       ...|++++|.+++.  .... ..+.+.+...+...-  -.++|++.|+.|...
T Consensus       116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVVfTh~d~~~  167 (313)
T TIGR00991       116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI--WRKSLVVLTHAQFSP  167 (313)
T ss_pred             cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh--hccEEEEEECCccCC
Confidence             25899999966542  2222 333444444443221  246899999999764

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=5.2e-13  Score=103.71  Aligned_cols=156  Identities=21%  Similarity=0.185  Sum_probs=102.9

Q ss_pred             HhhhcccccEEEEEcCCCCChHHHHhhHhcCC----------------------c------cc------ccCccceeEEE
Q 030192           10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGE----------------------I------VT------TIPTIGFNVET   55 (181)
Q Consensus        10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~----------------------~------~~------~~~~~~~~~~~   55 (181)
                      .+..++..++++++|+..+|||||+.+++..-                      |      ..      ..-|+......
T Consensus       170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~  249 (603)
T KOG0458|consen  170 EQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW  249 (603)
T ss_pred             cccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE
Confidence            34555678899999999999999999996410                      0      00      01133333444


Q ss_pred             EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc---ccHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192           56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVV--EARDELHRMLNEDELRDAVLLVFANKQDL  130 (181)
Q Consensus        56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl  130 (181)
                      ++-....+.+.|+||+.+|..-.......+|+.++|+|++..   .+|.  ....-...+++..  .-...||.+||+|+
T Consensus       250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~  327 (603)
T KOG0458|consen  250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDL  327 (603)
T ss_pred             EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccc
Confidence            555678899999999999988777777889999999999732   1121  1111222222221  13568899999998


Q ss_pred             CC--CCCHhHHHhhh-----CCCcccCcceEEEEccccCCCChH
Q 030192          131 PN--AMNAAEITDKL-----GLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus       131 ~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      .+  ....+++...+     ....+....+.+++||...|+|+-
T Consensus       328 V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~  371 (603)
T KOG0458|consen  328 VSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI  371 (603)
T ss_pred             cCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence            76  22333444333     233445567789999999999974

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.42  E-value=2.4e-12  Score=91.96  Aligned_cols=117  Identities=16%  Similarity=0.197  Sum_probs=74.3

Q ss_pred             CEEEEEEEcCCCCCc------ccchhhcc--ccccEEEEEEECC---CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030192           60 NISFTVWDVGGQDKI------RPLWRHYF--QNTQGLIFVVDSN---DRDRVVEARDELHRMLNEDELRDAVLLVFANKQ  128 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~------~~~~~~~~--~~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~  128 (181)
                      .....++||||+-+.      ..+....+  .-.-+++||+|..   ++..|.....+-..++..   .+.|.|++.||+
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~  191 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKT  191 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecc
Confidence            356889999997431      11111111  2356777888864   455665555566666665   578999999999


Q ss_pred             CCCCCCCHhHHHhh-------hCC--Ccc--------------cCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          129 DLPNAMNAAEITDK-------LGL--HSL--------------RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       129 Dl~~~~~~~~~~~~-------~~~--~~~--------------~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      |+.+.....++...       +..  ..+              .-.+...+-+|+.+|.|.+++|..+...+.+
T Consensus       192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE  265 (366)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence            99875432222221       110  000              0135567789999999999999999887654

>PTZ00416 elongation factor 2; Provisional

Probab=99.42  E-value=1.3e-12  Score=109.01  Aligned_cols=112  Identities=20%  Similarity=0.158  Sum_probs=79.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc------------cccc-------CccceeEEEEEEC----------CEEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTI-------PTIGFNVETVEYK----------NISFTV   65 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~------------~~~~-------~~~~~~~~~~~~~----------~~~~~i   65 (181)
                      ++..+|+++|+.++|||||+++|+...-            .+..       .|+......+.+.          +..+++
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            5567999999999999999999976321            0000       0111111222232          577999


Q ss_pred             EEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        66 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      +||||+.+|.......++.+|++++|+|+...-..+ ....|.....    .++|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence            999999999888888889999999999997643322 2234444443    468999999999986

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.42  E-value=1.8e-12  Score=97.84  Aligned_cols=156  Identities=13%  Similarity=0.126  Sum_probs=79.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCcc-----ceeEEEEEECC-EEEEEEEcCCCCCcccchhh-----cc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTI-----GFNVETVEYKN-ISFTVWDVGGQDKIRPLWRH-----YF   82 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~-----~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~-----~~   82 (181)
                      ...++|+|+|++|+|||||||.|.+-...+. .+.+     ......+.... -++.+||.||..........     -+
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            5779999999999999999999976332111 1111     12223333333 36999999995322222222     24


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC--C-----CCC------CHhHHHhhhCCCccc
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL--P-----NAM------NAAEITDKLGLHSLR  149 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl--~-----~~~------~~~~~~~~~~~~~~~  149 (181)
                      ...|.+|++.+-    .+....-++...+..   .++|+++|-||+|.  .     .+.      ..+++++.. ...++
T Consensus       113 ~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c-~~~L~  184 (376)
T PF05049_consen  113 YRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENC-LENLQ  184 (376)
T ss_dssp             GG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHH-HHHHH
T ss_pred             cccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHH-HHHHH
Confidence            579987776653    355555555555554   58999999999995  1     111      122222211 11111


Q ss_pred             C---cceEEEEccccC--CCChHHHHHHHHHHhh
Q 030192          150 Q---RHWYIQSTCATS--GEGLYEGLDWLSNNIA  178 (181)
Q Consensus       150 ~---~~~~~~~~S~~~--~~gv~~~~~~i~~~~~  178 (181)
                      .   ...++|-+|+.+  ..+...+.+.+.+.+.
T Consensus       185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp  218 (376)
T PF05049_consen  185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP  218 (376)
T ss_dssp             CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred             HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence            1   344688899887  3456777777766553

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.41  E-value=2.1e-12  Score=107.80  Aligned_cols=113  Identities=19%  Similarity=0.121  Sum_probs=80.6

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCc------------cccc-------CccceeEEEEEE----------------
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTI-------PTIGFNVETVEY----------------   58 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~------------~~~~-------~~~~~~~~~~~~----------------   58 (181)
                      .++..+|+++|+.++|||||+++|+...-            ....       .|+......+.+                
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            45677999999999999999999975321            0000       121211122222                


Q ss_pred             CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      .+..++++||||+.+|.......++.+|++++|+|+...-..+ ....|.....    .++|+++++||+|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~-t~~~~~~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCccc-HHHHHHHHHH----CCCCEEEEEECCccc
Confidence            2678899999999999988888889999999999997643332 2234444444    478999999999987

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.41  E-value=3.5e-12  Score=92.30  Aligned_cols=150  Identities=18%  Similarity=0.209  Sum_probs=100.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCc--------ccccCcccee---------------------EEEE----------
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEI--------VTTIPTIGFN---------------------VETV----------   56 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~--------~~~~~~~~~~---------------------~~~~----------   56 (181)
                      +...|+|.|.||+|||||+..|...-.        ....|+..++                     +..+          
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS  129 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS  129 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence            667999999999999999999953110        0111111110                     0111          


Q ss_pred             ----------EECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030192           57 ----------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN  126 (181)
Q Consensus        57 ----------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~n  126 (181)
                                +-.++.+.|++|.|--+.+..   ...-+|.+++|.-..-.+.++..+.-+.++..         |+|+|
T Consensus       130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vIN  197 (323)
T COG1703         130 RATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVIN  197 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeEe
Confidence                      113577889999875444432   23459999999888777888888887777755         89999


Q ss_pred             CCCCCCCC-CHhHHHhhhCCCc--c--cCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          127 KQDLPNAM-NAAEITDKLGLHS--L--RQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       127 K~Dl~~~~-~~~~~~~~~~~~~--~--~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      |.|....+ ...++...+++..  .  ..+..+++.+||.+|+|++++++.+.+..
T Consensus       198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~  253 (323)
T COG1703         198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR  253 (323)
T ss_pred             ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence            99955432 2334444444332  2  33566899999999999999999988754

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.40  E-value=3.7e-12  Score=90.13  Aligned_cols=153  Identities=18%  Similarity=0.179  Sum_probs=89.5

Q ss_pred             HhhhcccccEEEEEcCCCCChHHHHhhHhcCCc------------c-cc----cCccceeEEEEE---------------
Q 030192           10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI------------V-TT----IPTIGFNVETVE---------------   57 (181)
Q Consensus        10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~------------~-~~----~~~~~~~~~~~~---------------   57 (181)
                      ..+.+.....|.++|+.|+|||||++++.....            . ..    ....+.....+.               
T Consensus        15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~   94 (207)
T TIGR00073        15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHA   94 (207)
T ss_pred             HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHH
Confidence            345556788999999999999999999965310            0 00    001111111110               


Q ss_pred             -----ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           58 -----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        58 -----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                           ..+..+.++|+.|.-...   ..+.-..+..+.|+|+.+.+....  . ....      ...|.++++||+|+.+
T Consensus        95 l~~~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~~------~~~a~iiv~NK~Dl~~  162 (207)
T TIGR00073        95 LEDLPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL--K-YPGM------FKEADLIVINKADLAE  162 (207)
T ss_pred             HHHhccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh--h-hHhH------HhhCCEEEEEHHHccc
Confidence                 124578888888831111   111123566677888875433211  1 1111      2466799999999975


Q ss_pred             CC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          133 AM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       133 ~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      ..  ...+..+.+...   ....+++++|+++|.|++++++++.+..
T Consensus       163 ~~~~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       163 AVGFDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             cchhhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            32  222333322211   1345799999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.39  E-value=2.4e-12  Score=99.32  Aligned_cols=130  Identities=25%  Similarity=0.411  Sum_probs=96.4

Q ss_pred             ccceeEEEEEE-CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCC----------cccHHHHHHHHHHHHcCCCC
Q 030192           48 TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDEL  116 (181)
Q Consensus        48 ~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~  116 (181)
                      |.|+....+.. ....+.++|++|+...++.|.+++.++++++||+++++          ...+.+....|..++.....
T Consensus       222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~  301 (389)
T PF00503_consen  222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF  301 (389)
T ss_dssp             -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence            56677777888 89999999999999999999999999999999999863          23477888899999998888


Q ss_pred             CCCeEEEEEeCCCCCCC--------------------CCHhHHHhhhCCCc---c--cC--cceEEEEccccCCCChHHH
Q 030192          117 RDAVLLVFANKQDLPNA--------------------MNAAEITDKLGLHS---L--RQ--RHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus       117 ~~~piivv~nK~Dl~~~--------------------~~~~~~~~~~~~~~---~--~~--~~~~~~~~S~~~~~gv~~~  169 (181)
                      .+.|+||++||.|+...                    ...+.....+...+   .  ..  ..+.+..++|.+..++..+
T Consensus       302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v  381 (389)
T PF00503_consen  302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV  381 (389)
T ss_dssp             TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred             ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence            89999999999997421                    11122222111111   1  11  5567778999999999999


Q ss_pred             HHHHHHHh
Q 030192          170 LDWLSNNI  177 (181)
Q Consensus       170 ~~~i~~~~  177 (181)
                      |+.+.+.+
T Consensus       382 ~~~v~~~i  389 (389)
T PF00503_consen  382 FNAVKDII  389 (389)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhcCcC
Confidence            99887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.36  E-value=5.3e-12  Score=104.24  Aligned_cols=113  Identities=21%  Similarity=0.135  Sum_probs=77.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc--c----------ccc-------CccceeEEEE----EECCEEEEEEEcCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI--V----------TTI-------PTIGFNVETV----EYKNISFTVWDVGGQ   71 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~----------~~~-------~~~~~~~~~~----~~~~~~~~i~D~~g~   71 (181)
                      ++..+|+++|+.++|||||+++++...-  .          +..       -|+......+    ...+..++++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            4667999999999999999999975320  0          000       0222222222    225788999999999


Q ss_pred             CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      .+|.......++.+|++++|+|+...-.. .....|.....    .+.|.|+++||+|...
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~----~~~~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALR----ERVKPVLFINKVDRLI  153 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHH----cCCCeEEEEECchhhc
Confidence            99988888888999999999998754322 22233333333    2467799999999763

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.35  E-value=6.7e-12  Score=90.85  Aligned_cols=95  Identities=19%  Similarity=0.195  Sum_probs=72.3

Q ss_pred             CCcccchhhccccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccc
Q 030192           72 DKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLR  149 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~  149 (181)
                      +++..+...+++++|.+++|+|+.++. ++..+..|+.....    .++|+++|+||+|+.+..... +..+.     ++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~-----~~   94 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDI-----YR   94 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHH-----HH
Confidence            667777778899999999999999877 78888777764432    579999999999997543222 22222     22


Q ss_pred             CcceEEEEccccCCCChHHHHHHHHH
Q 030192          150 QRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus       150 ~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                      ..+.+++++||++|.|++++|..+..
T Consensus        95 ~~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        95 NIGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HCCCeEEEEecCCchhHHHHHhhhcC
Confidence            34568999999999999999987754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.35  E-value=2e-11  Score=91.02  Aligned_cols=107  Identities=14%  Similarity=0.071  Sum_probs=65.2

Q ss_pred             CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH
Q 030192           59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE  138 (181)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~  138 (181)
                      .++.+.++||+|.....   ......+|.++++.+....   .++......+      .++|.++++||+|+........
T Consensus       125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~  192 (300)
T TIGR00750       125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTI  192 (300)
T ss_pred             CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence            36789999999854222   2245668888888554322   2222222222      2467799999999876543222


Q ss_pred             HHhhh--CCC----cccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          139 ITDKL--GLH----SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       139 ~~~~~--~~~----~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      ....+  .+.    ....+..+++.+|++++.|++++++++....
T Consensus       193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            11111  111    1112334689999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.35  E-value=2e-11  Score=93.08  Aligned_cols=81  Identities=22%  Similarity=0.304  Sum_probs=55.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEEC-----------------CEEEEEEEcCCCCCc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDKI   74 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~~-----------------~~~~~i~D~~g~~~~   74 (181)
                      ...++|+++|.||+|||||+|++.+.... ...|  |...+...+...                 +..+.++|+||-...
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            56789999999999999999999876643 2222  334444434332                 335899999994321


Q ss_pred             -------ccchhhccccccEEEEEEECC
Q 030192           75 -------RPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        75 -------~~~~~~~~~~~d~~i~v~d~~   95 (181)
                             .......++++|++++|+|..
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                   112233457899999999974

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=1.6e-11  Score=93.00  Aligned_cols=153  Identities=18%  Similarity=0.080  Sum_probs=108.3

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc---c---ccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV---T---TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~---~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      .|+-.|+-..|||||+..+.+....   +   ...|+...+.....++..+.++|+||++++-.-........|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            5788899999999999999886543   1   233555556666667779999999999999888777788999999999


Q ss_pred             ECCCcccH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           93 DSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        93 d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      +.++.-.. ..-.-...+.+.     ....++|+||+|..+++..++..+..... ..-...++|.+|+++|.|++++.+
T Consensus        82 ~~deGl~~qtgEhL~iLdllg-----i~~giivltk~D~~d~~r~e~~i~~Il~~-l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          82 AADEGLMAQTGEHLLILDLLG-----IKNGIIVLTKADRVDEARIEQKIKQILAD-LSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             eCccCcchhhHHHHHHHHhcC-----CCceEEEEeccccccHHHHHHHHHHHHhh-cccccccccccccccCCCHHHHHH
Confidence            99642111 111112223322     23469999999998865444433322211 113345678999999999999999


Q ss_pred             HHHHHh
Q 030192          172 WLSNNI  177 (181)
Q Consensus       172 ~i~~~~  177 (181)
                      +|.+..
T Consensus       156 ~l~~L~  161 (447)
T COG3276         156 ELIDLL  161 (447)
T ss_pred             HHHHhh
Confidence            999877

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.34  E-value=1.7e-11  Score=95.57  Aligned_cols=162  Identities=14%  Similarity=0.181  Sum_probs=103.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEE--EEE----CCEEEEEEEcCCCCCcccchhhcccc----c
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--VEY----KNISFTVWDVGGQDKIRPLWRHYFQN----T   85 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~----~   85 (181)
                      ...+|+|+|..++|||||+.+|.+..-  ..++.+..|..  +..    +..++.+|...|...+..+....+..    -
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~  101 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN  101 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence            456999999999999999999976543  33444544443  322    22478999999877777766555542    3


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHH-----------------------------Hc---CC-------------------
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRM-----------------------------LN---ED-------------------  114 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~-----------------------------~~---~~-------------------  114 (181)
                      -.+|+|+|.+.|+.+.+..+.|...                             ..   ..                   
T Consensus       102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~  181 (472)
T PF05783_consen  102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES  181 (472)
T ss_pred             eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence            5677899999998764333222111                             00   00                   


Q ss_pred             -----------CCCCCeEEEEEeCCCCCCCCCHh--------HHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192          115 -----------ELRDAVLLVFANKQDLPNAMNAA--------EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus       115 -----------~~~~~piivv~nK~Dl~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                                 ...++|++||++|+|.....+.+        ++.+.+-..+.-++|...+.||++...+++.++.+|..
T Consensus       182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h  261 (472)
T PF05783_consen  182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH  261 (472)
T ss_pred             ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence                       00136899999999975421111        11111112222346777888999999999999999888


Q ss_pred             Hhhh
Q 030192          176 NIAS  179 (181)
Q Consensus       176 ~~~~  179 (181)
                      .+..
T Consensus       262 ~l~~  265 (472)
T PF05783_consen  262 RLYG  265 (472)
T ss_pred             Hhcc
Confidence            7653

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.32  E-value=2.1e-12  Score=83.74  Aligned_cols=113  Identities=19%  Similarity=0.162  Sum_probs=76.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccccc--CccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (181)
                      +|++++|..|+|||+|+.++....+....  ++.+                       +......+.+.++.+++||+..
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~   57 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD   57 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence            48999999999999999999777664221  2322                       3333455667899999999999


Q ss_pred             CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +.+++...  |...+. .....+.|.++++||.|+.+..   ++......        .++++|+++|.|+.
T Consensus        58 ~~~s~~~~--~~~~i~-~~~k~dl~~~~~~nk~dl~~~~---~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       58 DRDSADNK--NVPEVL-VGNKSDLPILVGGNRDVLEEER---QVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             CHHHHHHH--hHHHHH-hcCCCCCcEEEEeechhhHhhC---cCCHHHHH--------HHHHHhCCCcchhh
Confidence            88877554  443333 2233568899999999974322   11111111        24578999999884

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.32  E-value=8.3e-11  Score=91.73  Aligned_cols=154  Identities=17%  Similarity=0.163  Sum_probs=108.6

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCccc-----ccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccccc
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ   86 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (181)
                      -..++.+++.++|+.++|||.+++.+.+..+..     ..+....+...+.++...+.+-|.+-. ........- ..||
T Consensus       420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD  497 (625)
T KOG1707|consen  420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD  497 (625)
T ss_pred             cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence            444688999999999999999999999976553     222333333444456667778887764 222221111 6799


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCcccCcceEEEEcccc
Q 030192           87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCAT  161 (181)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S~~  161 (181)
                      +++++||++++.++......+......   ...|+++|++|+|+.+.     ....++++.+++..       -+..|++
T Consensus       498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~-------P~~~S~~  567 (625)
T KOG1707|consen  498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP-------PIHISSK  567 (625)
T ss_pred             eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-------CeeeccC
Confidence            999999999999998888877665444   57999999999998652     24578888888763       3356777


Q ss_pred             CCCChHHHHHHHHHHhh
Q 030192          162 SGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~~  178 (181)
                      ..-. .++|..|+.+..
T Consensus       568 ~~~s-~~lf~kL~~~A~  583 (625)
T KOG1707|consen  568 TLSS-NELFIKLATMAQ  583 (625)
T ss_pred             CCCC-chHHHHHHHhhh
Confidence            5222 788888876543

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.31  E-value=3.7e-11  Score=82.19  Aligned_cols=63  Identities=24%  Similarity=0.346  Sum_probs=42.5

Q ss_pred             EEEEEEcCCCC----CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030192           62 SFTVWDVGGQD----KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ  128 (181)
Q Consensus        62 ~~~i~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~  128 (181)
                      .+.++||||-.    .....+..++..+|++++|.+++...+-..... +......   ....+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~---~~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP---DKSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT---TCSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC---CCCeEEEEEcCC
Confidence            48899999953    234567888899999999999987555443333 3333333   234489999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.30  E-value=2.8e-10  Score=80.63  Aligned_cols=84  Identities=17%  Similarity=0.266  Sum_probs=61.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc--cc-cCccceeEEEEEECCEEEEEEEcCCCC------Cc-ccchhhccccc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQD------KI-RPLWRHYFQNT   85 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~i~D~~g~~------~~-~~~~~~~~~~~   85 (181)
                      ..-+|+++|-|.+|||||+..+..-...  ++ ..|.......+.+.+.++++.|.||--      +. .+......+.+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArta  140 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA  140 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence            4569999999999999999999764422  11 344445555677889999999999821      11 22344556889


Q ss_pred             cEEEEEEECCCccc
Q 030192           86 QGLIFVVDSNDRDR   99 (181)
Q Consensus        86 d~~i~v~d~~~~~s   99 (181)
                      |.++.|.|++..+.
T Consensus       141 DlilMvLDatk~e~  154 (364)
T KOG1486|consen  141 DLILMVLDATKSED  154 (364)
T ss_pred             cEEEEEecCCcchh
Confidence            99999999986543

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.28  E-value=2.4e-10  Score=86.84  Aligned_cols=113  Identities=22%  Similarity=0.217  Sum_probs=74.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC----Ccc-------------cc--c---CccceeE---EEEE-----ECCEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG----EIV-------------TT--I---PTIGFNV---ETVE-----YKNISFT   64 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~----~~~-------------~~--~---~~~~~~~---~~~~-----~~~~~~~   64 (181)
                      ...+.|+++|+.++||||||++|++.    ...             +.  .   .|++..+   ..++     +-..++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            57799999999999999999999876    221             11  1   2333333   2222     2347899


Q ss_pred             EEEcCCCC--------Cccc-----------------c----hhhccc-cccEEEEEE-ECC----CcccHHHHHHHHHH
Q 030192           65 VWDVGGQD--------KIRP-----------------L----WRHYFQ-NTQGLIFVV-DSN----DRDRVVEARDELHR  109 (181)
Q Consensus        65 i~D~~g~~--------~~~~-----------------~----~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~  109 (181)
                      ++|++|..        +..+                 .    ....++ +++..++|. |.+    .++.+......+..
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            99999821        1111                 0    122233 799999988 764    23456666666666


Q ss_pred             HHcCCCCCCCeEEEEEeCCCC
Q 030192          110 MLNEDELRDAVLLVFANKQDL  130 (181)
Q Consensus       110 ~~~~~~~~~~piivv~nK~Dl  130 (181)
                      .++.   .++|+++++||.|-
T Consensus       175 eLk~---~~kPfiivlN~~dp  192 (492)
T TIGR02836       175 ELKE---LNKPFIILLNSTHP  192 (492)
T ss_pred             HHHh---cCCCEEEEEECcCC
Confidence            6665   68999999999993

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.27  E-value=4.5e-11  Score=87.98  Aligned_cols=117  Identities=17%  Similarity=0.232  Sum_probs=67.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccccc-----------CccceeEEE--EEEC--CEEEEEEEcCCCCC--------
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-----------PTIGFNVET--VEYK--NISFTVWDVGGQDK--------   73 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~~~--~~~~--~~~~~i~D~~g~~~--------   73 (181)
                      .++|+++|.+|+|||||||.|.+.......           ++..+....  +...  .+.+.++||||-.+        
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999886543211           122222222  2222  45788999999211        


Q ss_pred             ----------cccc---------hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192           74 ----------IRPL---------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM  134 (181)
Q Consensus        74 ----------~~~~---------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  134 (181)
                                |...         ....=...|+++|.++.+. .++....-.....+.    ...++|-|+.|+|...+.
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence                      0000         0111135899999999874 333344444444444    358899999999976544


Q ss_pred             CHhH
Q 030192          135 NAAE  138 (181)
Q Consensus       135 ~~~~  138 (181)
                      +...
T Consensus       159 el~~  162 (281)
T PF00735_consen  159 ELQA  162 (281)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=1.5e-10  Score=94.16  Aligned_cols=126  Identities=20%  Similarity=0.195  Sum_probs=90.3

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCC--cc------------ccc-------CccceeEEEEEECC-EEEEEEEcCCC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV------------TTI-------PTIGFNVETVEYKN-ISFTVWDVGGQ   71 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~------------~~~-------~~~~~~~~~~~~~~-~~~~i~D~~g~   71 (181)
                      .++..+|+++|+-.+||||+..+++...  ..            +..       -|+.....++.+.+ +.++++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            4677899999999999999999996421  11            000       12223334566774 99999999999


Q ss_pred             CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhC
Q 030192           72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLG  144 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~  144 (181)
                      -+|.......++-+|+.++|+|+...-.. .....|.+..+    .++|.++++||+|.....   ..+++...+.
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~  157 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLG  157 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence            99999999999999999999999653222 23344555544    489999999999976532   3344444443

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=6.5e-11  Score=94.58  Aligned_cols=159  Identities=23%  Similarity=0.207  Sum_probs=103.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-----ccCccceeEEEEE----------------ECCEEEEEEEcCCCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVE----------------YKNISFTVWDVGGQDK   73 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~   73 (181)
                      -+..-|+|+|+..+|||-|+..+.+...-.     ....+|-+++...                ..---+.++||||++.
T Consensus       473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs  552 (1064)
T KOG1144|consen  473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES  552 (1064)
T ss_pred             cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence            366789999999999999999997643211     1112222222211                1223578999999999


Q ss_pred             cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC------------------CC
Q 030192           74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------------MN  135 (181)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------------~~  135 (181)
                      |.++.......||..|+|+|+...-.. .....+..+ +.   .+.|+|+.+||+|-...                  ..
T Consensus       553 FtnlRsrgsslC~~aIlvvdImhGlep-qtiESi~lL-R~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v  627 (1064)
T KOG1144|consen  553 FTNLRSRGSSLCDLAILVVDIMHGLEP-QTIESINLL-RM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV  627 (1064)
T ss_pred             hhhhhhccccccceEEEEeehhccCCc-chhHHHHHH-Hh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence            999999999999999999999642111 111222222 22   58999999999995320                  01


Q ss_pred             HhHHHhhh----------CCC---cccC----cceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          136 AAEITDKL----------GLH---SLRQ----RHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       136 ~~~~~~~~----------~~~---~~~~----~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ..++...+          +++   ++++    .-+.++++||..|+||.+++-+|+++..
T Consensus       628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence            11121111          111   1222    2356889999999999999999987653

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.20  E-value=5e-10  Score=82.09  Aligned_cols=151  Identities=20%  Similarity=0.189  Sum_probs=82.6

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcCCccc--------ccC---------ccceeEEEE-----------------
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT--------TIP---------TIGFNVETV-----------------   56 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--------~~~---------~~~~~~~~~-----------------   56 (181)
                      .+......-+.++|++|||||||++++.+.-...        ...         ..+.....+                 
T Consensus        98 ~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al  177 (290)
T PRK10463         98 RFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAA  177 (290)
T ss_pred             HHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHH
Confidence            4455678899999999999999998886531100        000         011111111                 


Q ss_pred             ---EECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           57 ---EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        57 ---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                         ...+..+.++++.|..-....   +--..+.-+.++++...+..  . ..+-.+      ...+-++|+||+|+.+.
T Consensus       178 ~~L~~~~~d~liIEnvGnLvcPa~---fdlge~~~v~vlsV~eg~dk--p-lKyp~~------f~~ADIVVLNKiDLl~~  245 (290)
T PRK10463        178 PRLPLDDNGILFIENVGNLVCPAS---FDLGEKHKVAVLSVTEGEDK--P-LKYPHM------FAAASLMLLNKVDLLPY  245 (290)
T ss_pred             HHHhhcCCcEEEEECCCCccCCCc---cchhhceeEEEEECcccccc--c-hhccch------hhcCcEEEEEhHHcCcc
Confidence               112345667777774211111   00112233466666532110  0 011111      23556999999999753


Q ss_pred             C--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHH
Q 030192          134 M--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN  176 (181)
Q Consensus       134 ~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~  176 (181)
                      .  ..+++.+.+...   ....+++++|+++|+|++++.+++...
T Consensus       246 ~~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        246 LNFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cHHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            2  233333322111   134579999999999999999999764

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.19  E-value=3.1e-10  Score=90.71  Aligned_cols=116  Identities=12%  Similarity=0.129  Sum_probs=72.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccc----cCccceeEEEEEECCEEEEEEEcCCCCCcc-------cc---hhhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PL---WRHY   81 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~~~~   81 (181)
                      ..++|+++|.+|+||||++|++++......    ..|...........+..+.++||||-....       ..   ...+
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~  196 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF  196 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence            446899999999999999999998763321    123332222233467889999999955421       11   2223


Q ss_pred             cc--cccEEEEEEECCCccc---HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           82 FQ--NTQGLIFVVDSNDRDR---VVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        82 ~~--~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      +.  .+|++++|..++....   -....+.+..++....+  ..+|||.|+.|...+
T Consensus       197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw--k~tIVVFThgD~lpp  251 (763)
T TIGR00993       197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW--FNAIVTLTHAASAPP  251 (763)
T ss_pred             HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH--cCEEEEEeCCccCCC
Confidence            33  4899999988753222   12334445444543221  348999999998753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=1.5e-10  Score=87.65  Aligned_cols=127  Identities=21%  Similarity=0.298  Sum_probs=90.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc--CCcc---------------c------c--cCccceeEEEEEECCEEEEEEEcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV---------------T------T--IPTIGFNVETVEYKNISFTVWDVG   69 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~--~~~~---------------~------~--~~~~~~~~~~~~~~~~~~~i~D~~   69 (181)
                      .++.+.+|+-+|.+|||||-..|+.  +.+.               +      .  .-++...+.++.+.+..+++.|||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP   89 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP   89 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence            3556789999999999999999953  1100               0      0  012223345677789999999999


Q ss_pred             CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCC
Q 030192           70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH  146 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~  146 (181)
                      ||++|..-.-..+..+|..+.|+|+...  ++.....+.+.++.   .++||+-++||.|-.....   ++++.+.+++.
T Consensus        90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~  164 (528)
T COG4108          90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDREGRDPLELLDEIEEELGIQ  164 (528)
T ss_pred             CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccccCChHHHHHHHHHHhCcc
Confidence            9999998887788899999999999654  44444445555554   6899999999999755433   44566666543

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=7.2e-11  Score=86.25  Aligned_cols=158  Identities=18%  Similarity=0.145  Sum_probs=99.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc----cC--ccceeE----------------EE----EEE------CCEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IP--TIGFNV----------------ET----VEY------KNIS   62 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----~~--~~~~~~----------------~~----~~~------~~~~   62 (181)
                      +-.++|.++|+...|||||..++.+-.....    ..  |+..-+                ..    ...      --..
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            5679999999999999999999977432110    00  000000                00    000      0136


Q ss_pred             EEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHH--HHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHH
Q 030192           63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL--HRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT  140 (181)
Q Consensus        63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~--~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~  140 (181)
                      +.++|.||++-.-+...+-..--|+.++|+.++.++.-....+-+  .+++.     -+.+|++-||+|+...+...+-.
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig-----ik~iiIvQNKIDlV~~E~AlE~y  162 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG-----IKNIIIVQNKIDLVSRERALENY  162 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc-----cceEEEEecccceecHHHHHHHH
Confidence            789999999754443333444589999999999765543333322  23333     25589999999998754222222


Q ss_pred             hhhCCCccc---CcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          141 DKLGLHSLR---QRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       141 ~~~~~~~~~---~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      +++ ..|.+   ..+.+++++||..+.|++-+++.|.+.+.
T Consensus       163 ~qI-k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         163 EQI-KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             HHH-HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            211 11222   24668999999999999999999988764

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.15  E-value=4.8e-10  Score=79.78  Aligned_cols=150  Identities=16%  Similarity=0.069  Sum_probs=97.9

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc--cc-cCccceeEEEEEECCEEEEEEEcCCCCC-------cccchhhccccccE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQG   87 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d~   87 (181)
                      -+|.++|-|.+||||++..+.+....  ++ ..+.........+..-++++.|.||--+       -.+......+.|+.
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl  139 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL  139 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence            48999999999999999999876532  11 2222222233456778899999998321       11234445688999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHH---------------------------------------------------------
Q 030192           88 LIFVVDSNDRDRVVEARDELHRM---------------------------------------------------------  110 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------------  110 (181)
                      +++|.|+..|-+...+.+.-.+-                                                         
T Consensus       140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D  219 (358)
T KOG1487|consen  140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD  219 (358)
T ss_pred             EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence            99999998776655554421110                                                         


Q ss_pred             --HcCCCC--CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          111 --LNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       111 --~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                        +...+.  ..+|.+.++||+|...   .+++.-.+...       ..+.+||.++.|++++++.+.+.+
T Consensus       220 dLIdvVegnr~yVp~iyvLNkIdsIS---iEELdii~~ip-------havpISA~~~wn~d~lL~~mweyL  280 (358)
T KOG1487|consen  220 DLIDVVEGNRIYVPCIYVLNKIDSIS---IEELDIIYTIP-------HAVPISAHTGWNFDKLLEKMWEYL  280 (358)
T ss_pred             hhhhhhccCceeeeeeeeecccceee---eeccceeeecc-------ceeecccccccchHHHHHHHhhcc
Confidence              000011  1357889999999554   34444334333       466899999999999999887654

>smart00053 DYNc Dynamin, GTPase

Probab=99.14  E-value=2.4e-09  Score=76.98  Aligned_cols=69  Identities=16%  Similarity=0.211  Sum_probs=43.2

Q ss_pred             EEEEEEEcCCCCC-------------cccchhhcccc-ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030192           61 ISFTVWDVGGQDK-------------IRPLWRHYFQN-TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN  126 (181)
Q Consensus        61 ~~~~i~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~n  126 (181)
                      ..+.++|+||-..             ...+...|+++ .+.+++|+|+...-.-+...... ..+..   .+.++++|+|
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia-~~ld~---~~~rti~ViT  200 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLA-KEVDP---QGERTIGVIT  200 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHH-HHHHH---cCCcEEEEEE
Confidence            5789999999642             12345566674 45888899886432222222222 22222   4789999999


Q ss_pred             CCCCCCC
Q 030192          127 KQDLPNA  133 (181)
Q Consensus       127 K~Dl~~~  133 (181)
                      |.|..++
T Consensus       201 K~D~~~~  207 (240)
T smart00053      201 KLDLMDE  207 (240)
T ss_pred             CCCCCCc
Confidence            9998764

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.13  E-value=7.8e-10  Score=75.64  Aligned_cols=148  Identities=20%  Similarity=0.143  Sum_probs=83.4

Q ss_pred             ccc-cEEEEEcCCCCChHHHHhhHhcC---Ccc---------c-c-----cCccceeEEEEE------------------
Q 030192           15 KKE-MRILMVGLDAAGKTTILYKLKLG---EIV---------T-T-----IPTIGFNVETVE------------------   57 (181)
Q Consensus        15 ~~~-~~i~i~G~~~~GKSsli~~l~~~---~~~---------~-~-----~~~~~~~~~~~~------------------   57 (181)
                      ++. +.|.+.|++|||||+|+.+++..   ++.         + .     ....+.....++                  
T Consensus        10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~   89 (202)
T COG0378          10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEE   89 (202)
T ss_pred             cCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHH
Confidence            344 79999999999999999997542   110         0 0     000111111110                  


Q ss_pred             ----ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           58 ----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        58 ----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                          ..+..+.+++..|+-   ....++.-..+.-|+|+|++..+....-   -     .+... ..=++|+||.|+++.
T Consensus        90 l~~~~~~~Dll~iEs~GNL---~~~~sp~L~d~~~v~VidvteGe~~P~K---~-----gP~i~-~aDllVInK~DLa~~  157 (202)
T COG0378          90 LVLDFPDLDLLFIESVGNL---VCPFSPDLGDHLRVVVIDVTEGEDIPRK---G-----GPGIF-KADLLVINKTDLAPY  157 (202)
T ss_pred             HhhcCCcCCEEEEecCcce---ecccCcchhhceEEEEEECCCCCCCccc---C-----CCcee-EeeEEEEehHHhHHH
Confidence                112467777777721   1112222234488999999754322100   0     11111 135899999999875


Q ss_pred             CCH--hHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          134 MNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       134 ~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      ...  +...+.....   +.+.+++++|.++|+|++++++++....
T Consensus       158 v~~dlevm~~da~~~---np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         158 VGADLEVMARDAKEV---NPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             hCccHHHHHHHHHHh---CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            432  3222211111   2345799999999999999999987654

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.10  E-value=2e-10  Score=83.99  Aligned_cols=151  Identities=20%  Similarity=0.205  Sum_probs=95.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc---ccCccceeEEEEEE-CCEEEEEEEcCCCC---------Ccccchhhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEY-KNISFTVWDVGGQD---------KIRPLWRHY   81 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~-~~~~~~i~D~~g~~---------~~~~~~~~~   81 (181)
                      ....-|.++|-+|+|||||+++|.......   -.+|...+...... .+..+.+.||.|--         .|++...+ 
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee-  254 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE-  254 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH-
Confidence            345689999999999999999998544321   24455544444443 45567888999832         23332222 


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe----EEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030192           82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS  157 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      ...+|.++-|.|++.|...+.....+ ..+++...+..|    ++=|-||+|.......++-    .         -.+.
T Consensus       255 VaeadlllHvvDiShP~ae~q~e~Vl-~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~----n---------~~v~  320 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQRETVL-HVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEK----N---------LDVG  320 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHHHHHH-HHHHhcCCCcHHHHhHHHhhccccccccccCcccc----C---------Cccc
Confidence            35799999999999987654444333 333332222222    5667788886543211110    0         0346


Q ss_pred             ccccCCCChHHHHHHHHHHhhhc
Q 030192          158 TCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       158 ~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      +|+++|.|++++.+.+-.++..-
T Consensus       321 isaltgdgl~el~~a~~~kv~~~  343 (410)
T KOG0410|consen  321 ISALTGDGLEELLKAEETKVASE  343 (410)
T ss_pred             cccccCccHHHHHHHHHHHhhhh
Confidence            89999999999999888776543

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=1.7e-09  Score=76.32  Aligned_cols=159  Identities=23%  Similarity=0.295  Sum_probs=103.9

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc----cCccceeEEEEEECCEEEEEEEcCCCCCcccc---hhhccccccEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL---WRHYFQNTQGLIF   90 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~d~~i~   90 (181)
                      .+|+++|...|||||+.....+...+..    ..|..+....+...-+++.+||.||+..+-..   ....++++.++++
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif  107 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF  107 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence            5699999999999999888776654321    22333333344556688999999998654322   4556789999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCC-CH-------hHHHhhhCCCcccCcceEEEEccc
Q 030192           91 VVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM-NA-------AEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      |+|+  .+.+.+....+...+...  -.+++.+=+.+.|.|....+ ..       ++..+.+....+....+.+..+|-
T Consensus       108 vIDa--Qddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI  185 (347)
T KOG3887|consen  108 VIDA--QDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI  185 (347)
T ss_pred             EEec--hHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence            9999  445655555444444332  23567888999999965432 11       111222223333445567777877


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030192          161 TSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~  179 (181)
                      .+ ..+-|+|..+++++..
T Consensus       186 yD-HSIfEAFSkvVQkLip  203 (347)
T KOG3887|consen  186 YD-HSIFEAFSKVVQKLIP  203 (347)
T ss_pred             cc-hHHHHHHHHHHHHHhh
Confidence            77 4588999998887753

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.07  E-value=4.7e-10  Score=78.45  Aligned_cols=116  Identities=24%  Similarity=0.402  Sum_probs=78.6

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCc----ccccCccceeEEEEEE-CCEEEEEEEcCCCCCc-----ccchhhcccccc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVETVEY-KNISFTVWDVGGQDKI-----RPLWRHYFQNTQ   86 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~-----~~~~~~~~~~~d   86 (181)
                      ..||++.|.+||||||+=.-+..+..    ....+|+++.+..+.+ +...+++||.+|++.+     .......+++.+
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~   83 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ   83 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence            46899999999999997666554432    1235566676666655 4588999999998743     224456778999


Q ss_pred             EEEEEEECCCcccHHHHH---HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192           87 GLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLPNAM  134 (181)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  134 (181)
                      ++++|||+...+-..+..   ..+..+++.  .+...+...++|.|+....
T Consensus        84 vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d  132 (295)
T KOG3886|consen   84 VLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQED  132 (295)
T ss_pred             eeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccc
Confidence            999999997543222222   222233332  2556688889999998654

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=6.8e-10  Score=88.04  Aligned_cols=111  Identities=16%  Similarity=0.187  Sum_probs=78.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc---------cC-------ccceeE---------EEEEECCEEEEEEEcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---------IP-------TIGFNV---------ETVEYKNISFTVWDVG   69 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~~-------~~~~~~---------~~~~~~~~~~~i~D~~   69 (181)
                      ....+|+++|+-.+|||+|+..|.....+.-         .+       .-++.+         .......+-+++.|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            4667999999999999999999976432211         00       111111         1122345779999999


Q ss_pred             CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192           70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL  130 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  130 (181)
                      |+-.|.......++.+|++++|+|+...-.+ +..+.+.....    .+.|+++|+||.|.
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVml-ntEr~ikhaiq----~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVML-NTERIIKHAIQ----NRLPIVVVINKVDR  261 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCcee-eHHHHHHHHHh----ccCcEEEEEehhHH
Confidence            9999999999999999999999999644333 22223333333    57999999999995

>cd01858 NGP_1 NGP-1

Probab=99.04  E-value=1.2e-09  Score=73.97  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=39.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE-CCEEEEEEEcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGG   70 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g   70 (181)
                      .+.++|+++|.||+|||||+|++.+.......++.+.+...... .+..+.++||||
T Consensus       100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG  156 (157)
T cd01858         100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG  156 (157)
T ss_pred             ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence            35688999999999999999999987765444433333222111 223488999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01859 MJ1464 MJ1464

Probab=99.02  E-value=7.7e-10  Score=74.82  Aligned_cols=94  Identities=17%  Similarity=0.104  Sum_probs=61.9

Q ss_pred             ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceE
Q 030192           75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY  154 (181)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  154 (181)
                      +++..+..+++|++++|+|+.++.....  ..+...+..   .++|+++|+||+|+.+....+++....     ...+.+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~-----~~~~~~   72 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIK-----ESEGIP   72 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHH-----HhCCCc
Confidence            4556777788999999999977543221  122222222   368999999999986432222221111     112346


Q ss_pred             EEEccccCCCChHHHHHHHHHHhh
Q 030192          155 IQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       155 ~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ++.+|++++.|++++++.+.+.+.
T Consensus        73 ~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          73 VVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEEEEccccccHHHHHHHHHHHHh
Confidence            889999999999999999987653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.01  E-value=1.2e-09  Score=74.93  Aligned_cols=54  Identities=20%  Similarity=0.331  Sum_probs=39.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE--EEEEECCEEEEEEEcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGG   70 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g   70 (181)
                      ..++++++|.||+|||||+|++.+.......+..|.+.  ..+.. +..+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-~~~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-DKKVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence            45899999999999999999999877644433333332  22332 24689999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01900 YchF YchF subfamily

Probab=99.01  E-value=7.9e-10  Score=80.93  Aligned_cols=76  Identities=24%  Similarity=0.244  Sum_probs=50.9

Q ss_pred             EEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECC-----------------EEEEEEEcCCCCCc----c
Q 030192           20 ILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKI----R   75 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~-----------------~~~~i~D~~g~~~~----~   75 (181)
                      |+++|.||+|||||+|++++.... ..  ..|.......+...+                 ..+.++|+||-.+.    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999987753 22  224344443333322                 25999999994321    1


Q ss_pred             c---chhhccccccEEEEEEECC
Q 030192           76 P---LWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        76 ~---~~~~~~~~~d~~i~v~d~~   95 (181)
                      .   .....++++|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            1   2233457899999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.00  E-value=1.4e-09  Score=82.25  Aligned_cols=78  Identities=22%  Similarity=0.260  Sum_probs=53.0

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECC-----------------EEEEEEEcCCCCCcc--
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR--   75 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~-----------------~~~~i~D~~g~~~~~--   75 (181)
                      ++|+++|.||+|||||+|++.+.... ..  ..|.......+...+                 ..+.++|+||-....  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999999987732 22  223344333333222                 358999999943211  


Q ss_pred             -----cchhhccccccEEEEEEECC
Q 030192           76 -----PLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        76 -----~~~~~~~~~~d~~i~v~d~~   95 (181)
                           ......++++|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                 12333457899999999984

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=9.5e-09  Score=76.12  Aligned_cols=159  Identities=21%  Similarity=0.188  Sum_probs=96.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC----cccccC------ccceeEEEE---------EECCEEEEEEEcCCCCCcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE----IVTTIP------TIGFNVETV---------EYKNISFTVWDVGGQDKIR   75 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~----~~~~~~------~~~~~~~~~---------~~~~~~~~i~D~~g~~~~~   75 (181)
                      ...++++++|+..||||+|.+++..-.    |.....      |.+.-+..+         +.+...+.++|.||+....
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            345899999999999999999996432    221111      111112222         2255788999999998777


Q ss_pred             cchhhccccccEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCC-C---CHhHHHhhh--CCCcc
Q 030192           76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNA-M---NAAEITDKL--GLHSL  148 (181)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~-~---~~~~~~~~~--~~~~~  148 (181)
                      +......+-.|..++|+|+.....-+...- .+.+++.      +..++|+||+|...+ .   ..++.....  .+...
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c------~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t  158 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC------KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST  158 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc------cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence            666666677999999999975332222222 2222222      335778888885432 2   122221111  11111


Q ss_pred             c-CcceEEEEccccCC----CChHHHHHHHHHHhhh
Q 030192          149 R-QRHWYIQSTCATSG----EGLYEGLDWLSNNIAS  179 (181)
Q Consensus       149 ~-~~~~~~~~~S~~~~----~gv~~~~~~i~~~~~~  179 (181)
                      . ....+++++|+..|    +++.++.+.+-..+.+
T Consensus       159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            1 23468999999999    7777777777666543

>cd01855 YqeH YqeH

Probab=98.98  E-value=9.9e-10  Score=76.72  Aligned_cols=97  Identities=19%  Similarity=0.067  Sum_probs=62.1

Q ss_pred             cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhh---CCCccc
Q 030192           74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKL---GLHSLR  149 (181)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~---~~~~~~  149 (181)
                      +...+..+++++|++++|+|+.++...  ....+   ...  ..++|+++|+||+|+..... ........   ......
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~--~~~~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS--LIPRL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc--cchhH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence            577788889999999999999875421  11111   111  14689999999999875432 22222111   000000


Q ss_pred             CcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          150 QRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       150 ~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      .....++.+||+++.|++++++.+.+.+
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            0112478999999999999999998765

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.98  E-value=1.1e-08  Score=76.32  Aligned_cols=120  Identities=20%  Similarity=0.234  Sum_probs=73.8

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc-----------ccCccceeEEEE--EEC--CEEEEEEEcCCCCC-----
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETV--EYK--NISFTVWDVGGQDK-----   73 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----------~~~~~~~~~~~~--~~~--~~~~~i~D~~g~~~-----   73 (181)
                      +...++|+++|+.|+|||||+|+|++.....           ..|++.+.....  ..+  ..+++++||||--+     
T Consensus        20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs   99 (373)
T COG5019          20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS   99 (373)
T ss_pred             cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence            3578999999999999999999998764321           123333433332  222  46889999999211     


Q ss_pred             -------------cc----------cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192           74 -------------IR----------PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL  130 (181)
Q Consensus        74 -------------~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  130 (181)
                                   ++          +.....=...|+++|.+..+ ..++..+.-....-+.    ..+.+|-|+.|+|.
T Consensus       100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~  174 (373)
T COG5019         100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLS----KRVNLIPVIAKADT  174 (373)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHh----cccCeeeeeecccc
Confidence                         00          00011112589999999976 3444444444444444    24668999999997


Q ss_pred             CCCCCHhH
Q 030192          131 PNAMNAAE  138 (181)
Q Consensus       131 ~~~~~~~~  138 (181)
                      .-..+..+
T Consensus       175 lT~~El~~  182 (373)
T COG5019         175 LTDDELAE  182 (373)
T ss_pred             CCHHHHHH
Confidence            65433333

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=6.6e-09  Score=77.55  Aligned_cols=123  Identities=20%  Similarity=0.231  Sum_probs=83.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc----ccCccceeEEEEEECC------------------------------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKN------------------------------   60 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~------------------------------   60 (181)
                      ....-|+++|.-..||||||+-|+...++.    ..||+..-...+.+..                              
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            356689999999999999999999888763    2333332222221100                              


Q ss_pred             -----------EEEEEEEcCCCCC-----------cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCC
Q 030192           61 -----------ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD  118 (181)
Q Consensus        61 -----------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  118 (181)
                                 ..+.++||||--.           |......+...+|.++++||....+--.+....+..+..+    .
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----E  211 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----E  211 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----c
Confidence                       2488999999322           3344566678999999999998765545555555555443    3


Q ss_pred             CeEEEEEeCCCCCCCCCHhHHHhhhC
Q 030192          119 AVLLVFANKQDLPNAMNAAEITDKLG  144 (181)
Q Consensus       119 ~piivv~nK~Dl~~~~~~~~~~~~~~  144 (181)
                      -.+=+|+||.|.+++   +++.+.++
T Consensus       212 dkiRVVLNKADqVdt---qqLmRVyG  234 (532)
T KOG1954|consen  212 DKIRVVLNKADQVDT---QQLMRVYG  234 (532)
T ss_pred             ceeEEEeccccccCH---HHHHHHHH
Confidence            457899999998765   55666554

>PRK12289 GTPase RsgA; Reviewed

Probab=98.97  E-value=2e-09  Score=81.62  Aligned_cols=89  Identities=19%  Similarity=0.209  Sum_probs=62.2

Q ss_pred             hhccccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030192           79 RHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS  157 (181)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      ...+.++|.+++|+|+.++. ....+..++... ..   .++|+++|+||+|+.+....+.+...+     +..++.++.
T Consensus        84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~~  154 (352)
T PRK12289         84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPLF  154 (352)
T ss_pred             chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEEE
Confidence            33568899999999998765 333445544433 22   579999999999997543333333222     234557889


Q ss_pred             ccccCCCChHHHHHHHHHH
Q 030192          158 TCATSGEGLYEGLDWLSNN  176 (181)
Q Consensus       158 ~S~~~~~gv~~~~~~i~~~  176 (181)
                      +||+++.|++++++.+...
T Consensus       155 iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        155 ISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEcCCCCCHHHHhhhhccc
Confidence            9999999999999887643

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.95  E-value=8.6e-10  Score=77.36  Aligned_cols=133  Identities=25%  Similarity=0.423  Sum_probs=92.7

Q ss_pred             CccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC----------CcccHHHHHHHHHHHHcCCCC
Q 030192           47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDEL  116 (181)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~  116 (181)
                      ||+|+....++...+.+.+.|.+|+...++.|.+++.+.-.+++++.++          +....++....+..++..+-.
T Consensus       185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF  264 (359)
T KOG0085|consen  185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF  264 (359)
T ss_pred             CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence            5666666667778888999999999999999999999988888765543          344566666677788887777


Q ss_pred             CCCeEEEEEeCCCCCCCC-----------------CHhHHHhhhC------CCcccCcceEEEEccccCCCChHHHHHHH
Q 030192          117 RDAVLLVFANKQDLPNAM-----------------NAAEITDKLG------LHSLRQRHWYIQSTCATSGEGLYEGLDWL  173 (181)
Q Consensus       117 ~~~piivv~nK~Dl~~~~-----------------~~~~~~~~~~------~~~~~~~~~~~~~~S~~~~~gv~~~~~~i  173 (181)
                      .+.++|+.+||.|+.+..                 .-.+..+.+-      ...-...-+....++|.+.+|+.-+|..+
T Consensus       265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV  344 (359)
T KOG0085|consen  265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV  344 (359)
T ss_pred             cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence            889999999999986421                 1111111111      11111122334458899999999999988


Q ss_pred             HHHhhh
Q 030192          174 SNNIAS  179 (181)
Q Consensus       174 ~~~~~~  179 (181)
                      -+.+..
T Consensus       345 kDtiLq  350 (359)
T KOG0085|consen  345 KDTILQ  350 (359)
T ss_pred             HHHHHH
Confidence            777654

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=3.3e-08  Score=74.19  Aligned_cols=121  Identities=17%  Similarity=0.256  Sum_probs=73.6

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcccc----------cCccceeEEEEEE--C--CEEEEEEEcCCCCC------
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVETVEY--K--NISFTVWDVGGQDK------   73 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~--~--~~~~~i~D~~g~~~------   73 (181)
                      +.-.++++++|+.|.|||||||+|+...+...          ..+..+.......  +  ..++.++||||-.+      
T Consensus        18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~   97 (366)
T KOG2655|consen   18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN   97 (366)
T ss_pred             cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence            34569999999999999999999987644321          1133333333322  2  35788999999111      


Q ss_pred             ------------cc-------cchhhcc--ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           74 ------------IR-------PLWRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        74 ------------~~-------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                                  ++       +.....+  ...|+++|.+..+ ..++....-....-+.    ....+|-|+.|.|...
T Consensus        98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT  172 (366)
T KOG2655|consen   98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPLDIEFMKKLS----KKVNLIPVIAKADTLT  172 (366)
T ss_pred             cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHhhHHHHHHHh----ccccccceeeccccCC
Confidence                        00       0111111  2589999999976 3334444443444444    3577899999999765


Q ss_pred             CCCHhHH
Q 030192          133 AMNAAEI  139 (181)
Q Consensus       133 ~~~~~~~  139 (181)
                      ..+...+
T Consensus       173 ~~El~~~  179 (366)
T KOG2655|consen  173 KDELNQF  179 (366)
T ss_pred             HHHHHHH
Confidence            5444333

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=1.5e-08  Score=80.67  Aligned_cols=147  Identities=14%  Similarity=0.278  Sum_probs=84.7

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccc--cCccce----------------------------e--------
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGF----------------------------N--------   52 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~~~~----------------------------~--------   52 (181)
                      +...+...||+|.|.+++||||+||+++.++.-..  .+++.+                            +        
T Consensus       103 ~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~  182 (749)
T KOG0448|consen  103 EVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKP  182 (749)
T ss_pred             HHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCc
Confidence            34457889999999999999999999976542110  111100                            0        


Q ss_pred             --------EEEEEE--C-----CEEEEEEEcCCCC---CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCC
Q 030192           53 --------VETVEY--K-----NISFTVWDVGGQD---KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED  114 (181)
Q Consensus        53 --------~~~~~~--~-----~~~~~i~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  114 (181)
                              ...+-+  +     .-.+.++|.||-+   ....-...++..+|++|+|.++.+  .+......+...... 
T Consensus       183 ~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs~-  259 (749)
T KOG0448|consen  183 DKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVSE-  259 (749)
T ss_pred             ccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhhc-
Confidence                    000000  0     1147788999843   334445666778999999999943  343333333333332 


Q ss_pred             CCCCCeEEEEEeCCCCCCCC--CHhHHHhh---hCCCcccCcceEEEEccccC
Q 030192          115 ELRDAVLLVFANKQDLPNAM--NAAEITDK---LGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus       115 ~~~~~piivv~nK~Dl~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~S~~~  162 (181)
                        .++.|.++.||+|....+  -.+++...   +...-.++..-.+|.+|++.
T Consensus       260 --~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  260 --EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             --cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence              356677778999976532  22233332   23223333444577788554

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.92  E-value=1.4e-09  Score=78.08  Aligned_cols=158  Identities=13%  Similarity=0.084  Sum_probs=95.6

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCccc--ccCccceeE-EEEEECCEEEEEEEcCCC----------CCcccchh
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNV-ETVEYKNISFTVWDVGGQ----------DKIRPLWR   79 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~-~~~~~~~~~~~i~D~~g~----------~~~~~~~~   79 (181)
                      ++.+...+.+.|.+|+|||||+|.+...+...  ..++.+.+. ...-.-+-.+.+.|.||.          .++.++..
T Consensus       132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~  211 (320)
T KOG2486|consen  132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTK  211 (320)
T ss_pred             CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHH
Confidence            45678999999999999999999998766432  222222211 111122446889999992          23445555


Q ss_pred             hcccccc---EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHh-hhC-CCcc
Q 030192           80 HYFQNTQ---GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITD-KLG-LHSL  148 (181)
Q Consensus        80 ~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------~~~~~~-~~~-~~~~  148 (181)
                      .|+-+-+   .+++++|++.+  ++..+....+++.+   .+.|+.+|.||||......      ...+.. ..+ ....
T Consensus       212 ~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~  286 (320)
T KOG2486|consen  212 SYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV  286 (320)
T ss_pred             HHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence            5654433   34455666543  44555555566665   6899999999999754211      111111 000 0111


Q ss_pred             cCcceEEEEccccCCCChHHHHHHHHH
Q 030192          149 RQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus       149 ~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                      .....+++.+|+.++.|+++++-.+.+
T Consensus       287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  287 FLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             eeccCCceeeecccccCceeeeeehhh
Confidence            122345557999999999988766654

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=1.3e-08  Score=73.82  Aligned_cols=140  Identities=21%  Similarity=0.172  Sum_probs=90.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC-------C---cc--cccC-------ccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG-------E---IV--TTIP-------TIGFNVETVEYKNISFTVWDVGGQDKIR   75 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~-------~---~~--~~~~-------~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (181)
                      +...+|+.+|+-+.|||||..++...       .   +.  ...|       |+......++..+..+-.+|.||+.+|-
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv   89 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence            56789999999999999998887431       1   11  1111       3333344555677888999999999988


Q ss_pred             cchhhccccccEEEEEEECCCc---ccHHHHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCCCCHh-----HHHhhhCCC
Q 030192           76 PLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDA-VLLVFANKQDLPNAMNAA-----EITDKLGLH  146 (181)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~-piivv~nK~Dl~~~~~~~-----~~~~~~~~~  146 (181)
                      +.......+.|+.|+|+.+++.   ++-+.+  .+.+.      -+. .+++++||+|+.+..+..     ++++.+...
T Consensus        90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHi--Llarq------vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y  161 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDGPMPQTREHI--LLARQ------VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY  161 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCCCCCcchhhh--hhhhh------cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence            7766666789999999999863   222221  11111      234 577888999999743222     222333333


Q ss_pred             cccCcceEEEEccccC
Q 030192          147 SLRQRHWYIQSTCATS  162 (181)
Q Consensus       147 ~~~~~~~~~~~~S~~~  162 (181)
                      .+..-+.|++.-|+..
T Consensus       162 ~f~gd~~Pii~gSal~  177 (394)
T COG0050         162 GFPGDDTPIIRGSALK  177 (394)
T ss_pred             CCCCCCcceeechhhh
Confidence            3334466787777776

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.89  E-value=5.6e-09  Score=69.46  Aligned_cols=52  Identities=23%  Similarity=0.264  Sum_probs=37.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCc--cceeEEEEEECCEEEEEEEcCCC
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPT--IGFNVETVEYKNISFTVWDVGGQ   71 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~   71 (181)
                      +++++|.+|+|||||+|++.+.........  .+.....+..++ .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence            899999999999999999998876433222  222223333333 6899999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.87  E-value=7.1e-09  Score=77.28  Aligned_cols=86  Identities=21%  Similarity=0.245  Sum_probs=59.9

Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEcc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTC  159 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      ...++|.+++|+|+.+++........|...+..   .++|+++|+||+|+.+.. ...++...     ++..+++++++|
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~~g~~v~~vS  148 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLAL-----YRAIGYDVLELS  148 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHH-----HHHCCCeEEEEe
Confidence            358899999999998887655554444444433   578999999999996321 11122222     223345789999


Q ss_pred             ccCCCChHHHHHHHH
Q 030192          160 ATSGEGLYEGLDWLS  174 (181)
Q Consensus       160 ~~~~~gv~~~~~~i~  174 (181)
                      |+++.|+++++..+.
T Consensus       149 A~~g~gi~~L~~~l~  163 (298)
T PRK00098        149 AKEGEGLDELKPLLA  163 (298)
T ss_pred             CCCCccHHHHHhhcc
Confidence            999999999998764

>PRK12288 GTPase RsgA; Reviewed

Probab=98.86  E-value=1.5e-08  Score=76.87  Aligned_cols=89  Identities=19%  Similarity=0.142  Sum_probs=63.4

Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcccc
Q 030192           82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT  161 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  161 (181)
                      ..++|.+++|++.....++..+..|+... ..   .++|.++|+||+|+.+...........  ..++..+++++++||+
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~--~~y~~~g~~v~~vSA~  191 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVAC-ET---LGIEPLIVLNKIDLLDDEGRAFVNEQL--DIYRNIGYRVLMVSSH  191 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCcHHHHHHHHHH--HHHHhCCCeEEEEeCC
Confidence            35699999999998777887777776533 22   568999999999997543221221111  1123345689999999


Q ss_pred             CCCChHHHHHHHHHH
Q 030192          162 SGEGLYEGLDWLSNN  176 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~  176 (181)
                      ++.|++++++.+...
T Consensus       192 tg~GideL~~~L~~k  206 (347)
T PRK12288        192 TGEGLEELEAALTGR  206 (347)
T ss_pred             CCcCHHHHHHHHhhC
Confidence            999999999988653

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.86  E-value=1.7e-08  Score=72.08  Aligned_cols=84  Identities=32%  Similarity=0.545  Sum_probs=63.3

Q ss_pred             ccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCCC
Q 030192           48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDELR  117 (181)
Q Consensus        48 ~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~  117 (181)
                      |.|+-...+..+.++|+.+|.+|+.+.++.|..++....++++|+..++-          ..+++....+..+-...-+.
T Consensus       189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~  268 (379)
T KOG0099|consen  189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR  268 (379)
T ss_pred             ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence            55666667788889999999999999999999999999999999887531          13344444444443333334


Q ss_pred             CCeEEEEEeCCCCC
Q 030192          118 DAVLLVFANKQDLP  131 (181)
Q Consensus       118 ~~piivv~nK~Dl~  131 (181)
                      .+.+|+.+||.|+.
T Consensus       269 tisvIlFLNKqDll  282 (379)
T KOG0099|consen  269 TISVILFLNKQDLL  282 (379)
T ss_pred             hhheeEEecHHHHH
Confidence            67899999999974

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.85  E-value=5.7e-08  Score=73.00  Aligned_cols=156  Identities=17%  Similarity=0.108  Sum_probs=97.3

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcccc-----------------cCccceeEEEEEE------------------
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------------IPTIGFNVETVEY------------------   58 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----------------~~~~~~~~~~~~~------------------   58 (181)
                      ....+.++..|+.++|||||.-.|..+....-                 .-+..+.+.-+-+                  
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            35678999999999999999999976543210                 1122222221111                  


Q ss_pred             -----CCEEEEEEEcCCCCCcccch--hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           59 -----KNISFTVWDVGGQDKIRPLW--RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        59 -----~~~~~~i~D~~g~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                           .+--+.++||.|+++|.+..  ...-++.|..++++.+++.-+  .....   .+........|+++++||+|+.
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkE---HLgi~~a~~lPviVvvTK~D~~  268 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKE---HLGIALAMELPVIVVVTKIDMV  268 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhH---hhhhhhhhcCCEEEEEEecccC
Confidence                 12347799999999987653  334468999999999976432  22221   1111122479999999999998


Q ss_pred             CCCCH----hHHHhhhC--------------------CCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192          132 NAMNA----AEITDKLG--------------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLS  174 (181)
Q Consensus       132 ~~~~~----~~~~~~~~--------------------~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~  174 (181)
                      +.+..    +++...+.                    .....+.-.|+|.+|+.+|.|++-+.+.+.
T Consensus       269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~  335 (527)
T COG5258         269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL  335 (527)
T ss_pred             cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence            74322    22222221                    011122357999999999999876655443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.84  E-value=4.9e-09  Score=81.60  Aligned_cols=155  Identities=19%  Similarity=0.313  Sum_probs=106.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccc-ee-EEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FN-VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~-~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      -.+|++|+|..++|||+|+.+++.+.+... .|.-+ +. ...+.+....+.+.|.+|....     .|....|++|+||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a-----Qft~wvdavIfvf  103 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA-----QFCQWVDAVVFVF  103 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchh-----hhhhhccceEEEE
Confidence            357999999999999999999998887644 33222 21 2334556778888888884332     2556799999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--C-CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--M-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      .+.+..+++.+...............+|.++++++.-....  . ..+.-...+.   .+.....+|++++..|.+++.+
T Consensus       104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~---~~~krcsy~et~atyGlnv~rv  180 (749)
T KOG0705|consen  104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLS---AQMKRCSYYETCATYGLNVERV  180 (749)
T ss_pred             EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHH---HhcCccceeecchhhhhhHHHH
Confidence            99999999888887777766555556888888887543211  1 1111111110   0112235889999999999999


Q ss_pred             HHHHHHHhh
Q 030192          170 LDWLSNNIA  178 (181)
Q Consensus       170 ~~~i~~~~~  178 (181)
                      |..+..++.
T Consensus       181 f~~~~~k~i  189 (749)
T KOG0705|consen  181 FQEVAQKIV  189 (749)
T ss_pred             HHHHHHHHH
Confidence            999888764

>cd01855 YqeH YqeH

Probab=98.83  E-value=1.1e-08  Score=71.49  Aligned_cols=54  Identities=22%  Similarity=0.351  Sum_probs=36.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc----------cccCccceeEEEEEECCEEEEEEEcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV----------TTIPTIGFNVETVEYKNISFTVWDVGG   70 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (181)
                      ...+++++|.+|+|||||+|++.+....          +..|.+......+.... .+.++||||
T Consensus       126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG  189 (190)
T cd01855         126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG  189 (190)
T ss_pred             cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence            4578999999999999999999875421          12222222223333332 579999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.83  E-value=2e-08  Score=74.53  Aligned_cols=88  Identities=18%  Similarity=0.106  Sum_probs=62.4

Q ss_pred             hhccccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030192           79 RHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS  157 (181)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      ...+.++|.+++|+|+.++. ++..+..|+.....    .++|+++|+||+|+.+.........     .+...+.+++.
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~-----~~~~~g~~v~~  143 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELV-----EALALGYPVLA  143 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHH-----HHHhCCCeEEE
Confidence            33568899999999999887 77777666554433    4789999999999975421111111     11224567889


Q ss_pred             ccccCCCChHHHHHHHHH
Q 030192          158 TCATSGEGLYEGLDWLSN  175 (181)
Q Consensus       158 ~S~~~~~gv~~~~~~i~~  175 (181)
                      +|++++.|+++++..+..
T Consensus       144 vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         144 VSAKTGEGLDELREYLKG  161 (287)
T ss_pred             EECCCCccHHHHHhhhcc
Confidence            999999999999887653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01859 MJ1464 MJ1464

Probab=98.78  E-value=2.5e-08  Score=67.41  Aligned_cols=55  Identities=25%  Similarity=0.344  Sum_probs=40.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEE-EEEECCEEEEEEEcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGG   70 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g   70 (181)
                      ...+++++|.+|+||||++|++.+.......++.+.+.. .+...+..+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence            567999999999999999999998765555555554432 1112334799999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.76  E-value=2.3e-08  Score=75.21  Aligned_cols=56  Identities=21%  Similarity=0.328  Sum_probs=40.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE--EEEEECCEEEEEEEcCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQ   71 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~   71 (181)
                      ....+++++|-||+||||+||+|.+.......+..|.+-  ..+.. +..+.++||||-
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~-~~~i~LlDtPGi  187 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL-DDGIYLLDTPGI  187 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc-CCCeEEecCCCc
Confidence            356889999999999999999999988765444334432  22322 233899999994

>cd01858 NGP_1 NGP-1

Probab=98.76  E-value=4.5e-08  Score=66.27  Aligned_cols=90  Identities=16%  Similarity=0.076  Sum_probs=57.9

Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      .++.+|.+++|+|+.++..-  ....+...+... ..++|+++|+||+|+.+......+...+...    .....+.+|+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iSa   77 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHASI   77 (157)
T ss_pred             hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEeec
Confidence            45789999999999876321  112222233221 2458999999999997543333333333221    1223578999


Q ss_pred             cCCCChHHHHHHHHHHh
Q 030192          161 TSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~  177 (181)
                      +++.|++++++.+.+.+
T Consensus        78 ~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          78 NNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             cccccHHHHHHHHHHHH
Confidence            99999999999987653

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.74  E-value=3.3e-08  Score=73.41  Aligned_cols=56  Identities=20%  Similarity=0.368  Sum_probs=40.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccCcccee--EEEEEECCEEEEEEEcCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQ   71 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~   71 (181)
                      ...++++++|.||+|||||+|++.+.......+..+.+  ...+.. +..+.++||||-
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKGLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCcEEEEECCCc
Confidence            35689999999999999999999987754443333332  222322 235889999995

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.74  E-value=4.8e-08  Score=66.01  Aligned_cols=82  Identities=17%  Similarity=0.163  Sum_probs=53.5

Q ss_pred             cEEEEEEECCCcccHHHHHHHHH-HHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192           86 QGLIFVVDSNDRDRVVEARDELH-RMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  164 (181)
                      |.+++|+|+.++.+...  .++. ..+..   .++|+++|+||+|+.+.....++...+..    .....++.+|++++.
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~----~~~~~ii~vSa~~~~   71 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRH----SYPTIPFKISATNGQ   71 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHh----hCCceEEEEeccCCc
Confidence            68999999987654432  2222 23222   47899999999999654322222212211    113357889999999


Q ss_pred             ChHHHHHHHHHH
Q 030192          165 GLYEGLDWLSNN  176 (181)
Q Consensus       165 gv~~~~~~i~~~  176 (181)
                      |++++.+.+.+.
T Consensus        72 gi~~L~~~i~~~   83 (155)
T cd01849          72 GIEKKESAFTKQ   83 (155)
T ss_pred             ChhhHHHHHHHH
Confidence            999999988664

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01856 YlqF YlqF

Probab=98.73  E-value=3.2e-08  Score=67.97  Aligned_cols=56  Identities=16%  Similarity=0.322  Sum_probs=39.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccC--ccceeEEEEEECCEEEEEEEcCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP--TIGFNVETVEYKNISFTVWDVGGQ   71 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~   71 (181)
                      ...++++++|.+|+|||||+|++.+.......+  ........+... ..+.++||||-
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence            345799999999999999999999877643332  222222223332 56889999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=3.9e-08  Score=79.25  Aligned_cols=108  Identities=17%  Similarity=0.177  Sum_probs=78.6

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCC------------cc---cccCccceeEE--EEE--ECCEEEEEEEcCCCCCc
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IV---TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKI   74 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~---~~~~~~~~~~~--~~~--~~~~~~~i~D~~g~~~~   74 (181)
                      .+...+++++.+...|||||.+.|....            |.   +...+-|++..  .++  ..++.++++|+|||-+|
T Consensus         6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf   85 (887)
T KOG0467|consen    6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF   85 (887)
T ss_pred             CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence            3566799999999999999999996432            11   12224444432  233  37899999999999999


Q ss_pred             ccchhhccccccEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030192           75 RPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQD  129 (181)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D  129 (181)
                      ........+-+|+.++++|+..   .+++.-+.+.|.+        +...++|+||+|
T Consensus        86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkid  135 (887)
T KOG0467|consen   86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhh
Confidence            9999999999999999999964   2333333333332        445799999999

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.72  E-value=3e-08  Score=73.22  Aligned_cols=55  Identities=18%  Similarity=0.344  Sum_probs=38.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccccCcccee--EEEEEECCEEEEEEEcCCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQ   71 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~   71 (181)
                      ..++++++|.||+|||||+|++.+.......+..+.+  ...+... -.+.++||||-
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence            4589999999999999999999987654333322222  2233332 25799999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.71  E-value=1.7e-08  Score=77.19  Aligned_cols=98  Identities=23%  Similarity=0.267  Sum_probs=63.5

Q ss_pred             CCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccc
Q 030192           71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLR  149 (181)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~  149 (181)
                      +++|.+....+.+.++++++|+|+.+...  .....+.+.+     .+.|+++|+||+|+.... ..+++...+. ..++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k  121 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK  121 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence            55778888888889999999999976432  1122222222     257899999999986532 2222222110 0111


Q ss_pred             Ccce---EEEEccccCCCChHHHHHHHHHH
Q 030192          150 QRHW---YIQSTCATSGEGLYEGLDWLSNN  176 (181)
Q Consensus       150 ~~~~---~~~~~S~~~~~gv~~~~~~i~~~  176 (181)
                      ..++   .++.+||++|.|++++++.+.+.
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            1222   37889999999999999998653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.1e-07  Score=71.44  Aligned_cols=79  Identities=24%  Similarity=0.341  Sum_probs=54.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEE------------------CCEEEEEEEcCCC----
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY------------------KNISFTVWDVGGQ----   71 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~------------------~~~~~~i~D~~g~----   71 (181)
                      .++++|+|.||+|||||.|.++..... ..+|  |++.+...+..                  -...+.++|.+|-    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999876522 2222  33333322211                  2356889999882    


Q ss_pred             ---CCcccchhhccccccEEEEEEECC
Q 030192           72 ---DKIRPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        72 ---~~~~~~~~~~~~~~d~~i~v~d~~   95 (181)
                         +..-+.....++++|+++.|++..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence               223344556678999999999975

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.67  E-value=5.8e-07  Score=64.39  Aligned_cols=85  Identities=16%  Similarity=0.099  Sum_probs=56.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC--Ccccc----cCccceeEEEEEE---CCEEEEEEEcCCCCCccc------chh
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVTT----IPTIGFNVETVEY---KNISFTVWDVGGQDKIRP------LWR   79 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~----~~~~~~~~~~~~~---~~~~~~i~D~~g~~~~~~------~~~   79 (181)
                      ....-|.++|++++|||+|+|++.+.  .+...    ..|.|+-......   .+..+.++||+|-.....      ...
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            34567899999999999999999998  55421    2345544443333   467899999999543322      222


Q ss_pred             hcccc--ccEEEEEEECCCccc
Q 030192           80 HYFQN--TQGLIFVVDSNDRDR   99 (181)
Q Consensus        80 ~~~~~--~d~~i~v~d~~~~~s   99 (181)
                      ..+..  ++.+|+..+.+....
T Consensus        85 ~~l~~llss~~i~n~~~~~~~~  106 (224)
T cd01851          85 FALATLLSSVLIYNSWETILGD  106 (224)
T ss_pred             HHHHHHHhCEEEEeccCcccHH
Confidence            33333  888888887764433

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>TIGR00092 GTP-binding protein YchF

Probab=98.66  E-value=1.6e-07  Score=71.25  Aligned_cols=78  Identities=18%  Similarity=0.086  Sum_probs=54.4

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCc-c-ccc--CccceeEEEEEEC-----------------CEEEEEEEcCCCCC---
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEI-V-TTI--PTIGFNVETVEYK-----------------NISFTVWDVGGQDK---   73 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~-~-~~~--~~~~~~~~~~~~~-----------------~~~~~i~D~~g~~~---   73 (181)
                      ++++++|.||+|||||.+.+++... . ..+  .|...+...+...                 ...+.+.|.||--.   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999988765 3 222  2333333333332                 24688999999432   


Q ss_pred             ----cccchhhccccccEEEEEEECC
Q 030192           74 ----IRPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        74 ----~~~~~~~~~~~~d~~i~v~d~~   95 (181)
                          ........++++|+++.|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2233455678999999999984

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.65  E-value=7.4e-08  Score=65.09  Aligned_cols=55  Identities=18%  Similarity=0.315  Sum_probs=37.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccCccceeEEEEEECCEEEEEEEcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGG   70 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (181)
                      ....+++++|.+|+|||||+|.+.+....  +..+........+.. +..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL-DNKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe-cCCEEEEECCC
Confidence            46788999999999999999999987642  222222222222222 24689999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=2.5e-07  Score=69.47  Aligned_cols=150  Identities=23%  Similarity=0.251  Sum_probs=94.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-----------------ccCcc-------ceeE--EEEEE------------
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-----------------TIPTI-------GFNV--ETVEY------------   58 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-----------------~~~~~-------~~~~--~~~~~------------   58 (181)
                      .++++++|...+|||||+-.|.++....                 ...|.       |++-  .-+++            
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            4699999999999999999997654321                 01111       1110  00111            


Q ss_pred             CCEEEEEEEcCCCCCcccchhhccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-
Q 030192           59 KNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-  135 (181)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-  135 (181)
                      ..--+.++|.+|+.+|.+.....+.  ..|..++|+.+......... +-+.-+..    .++|+.++++|+|+.++.. 
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~A----L~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLIAA----LNIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHHHH----hCCCeEEEEEeeccccchhH
Confidence            1234779999999999887665555  37888999998765443211 11222222    4799999999999988643 


Q ss_pred             ---HhHHHhhhCCCcc---------------------cCcceEEEEccccCCCChHHHHH
Q 030192          136 ---AAEITDKLGLHSL---------------------RQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus       136 ---~~~~~~~~~~~~~---------------------~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                         .+++++.+.....                     ...-.|+|.+|+..|+|++-+-.
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~  381 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT  381 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence               3334333321111                     12356899999999999875543

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=2.1e-07  Score=73.25  Aligned_cols=139  Identities=15%  Similarity=0.113  Sum_probs=85.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (181)
                      -.+-++++||||+||||||+.+...........+.--+..+.+...++.+.+.|.+  ..++ .....-+|++++++|.+
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~m-iDvaKIaDLVlLlIdgn  144 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQM-IDVAKIADLVLLLIDGN  144 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HHHH-HhHHHhhheeEEEeccc
Confidence            34677899999999999999997654332222111122335677788999998843  2222 33446799999999996


Q ss_pred             CcccHHHHHHHHHHHHcCCCCCC-CeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccC--cceEEEEccccC
Q 030192           96 DRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQ--RHWYIQSTCATS  162 (181)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~S~~~  162 (181)
                      -.  |+--...+..++..   .+ +.++-|+|..|+.... .+......+...++..  .+..+|..|-..
T Consensus       145 fG--fEMETmEFLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         145 FG--FEMETMEFLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             cC--ceehHHHHHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            43  32222234444444   23 3467788999998643 4455555555444432  355566666544

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.60  E-value=1.8e-07  Score=69.22  Aligned_cols=80  Identities=25%  Similarity=0.348  Sum_probs=56.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEE-----------------CCEEEEEEEcCCCC---
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY-----------------KNISFTVWDVGGQD---   72 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~-----------------~~~~~~i~D~~g~~---   72 (181)
                      ..++++|||.||+|||||.|.+...... ...|  |++.+...+..                 -...+.++|++|--   
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            6789999999999999999999876643 2233  55544443322                 23568999998832   


Q ss_pred             ----CcccchhhccccccEEEEEEECC
Q 030192           73 ----KIRPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        73 ----~~~~~~~~~~~~~d~~i~v~d~~   95 (181)
                          ..-+...+.++.+|+++-|+++.
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEec
Confidence                22233455668899999998864

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=1.5e-07  Score=69.68  Aligned_cols=143  Identities=20%  Similarity=0.177  Sum_probs=88.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc-------CCccc-----cc-----CccceeEEEE--EECCEEEEEEEcCCCCCcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL-------GEIVT-----TI-----PTIGFNVETV--EYKNISFTVWDVGGQDKIR   75 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~-------~~~~~-----~~-----~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~   75 (181)
                      +-..+|+-+|+...|||||-.++..       .++..     ..     ..+.++...+  +-....+--.|.||+.+|-
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI  131 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI  131 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence            4568999999999999999887743       11111     11     1222333333  3456677788999999998


Q ss_pred             cchhhccccccEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-----HHHhhhCCCccc
Q 030192           76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-----EITDKLGLHSLR  149 (181)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-----~~~~~~~~~~~~  149 (181)
                      +-...-..+-|+.|+|+.+++..=.+...- .+...+.     -..+++.+||.|+++..+.-     ++++.+....+.
T Consensus       132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVG-----V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~  206 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVG-----VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD  206 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcC-----CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence            877777788999999999987422222111 2222222     14578889999998543222     233333444444


Q ss_pred             CcceEEEEccccC
Q 030192          150 QRHWYIQSTCATS  162 (181)
Q Consensus       150 ~~~~~~~~~S~~~  162 (181)
                      .-+.|++.-||.-
T Consensus       207 Gd~~PvI~GSAL~  219 (449)
T KOG0460|consen  207 GDNTPVIRGSALC  219 (449)
T ss_pred             CCCCCeeecchhh
Confidence            5566777776653

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=3.8e-07  Score=72.11  Aligned_cols=111  Identities=17%  Similarity=0.167  Sum_probs=81.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC-----cccc---cC---------cccee----EEEEEECCEEEEEEEcCCCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE-----IVTT---IP---------TIGFN----VETVEYKNISFTVWDVGGQDK   73 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~-----~~~~---~~---------~~~~~----~~~~~~~~~~~~i~D~~g~~~   73 (181)
                      ++..+|.+..+-.+||||+-++.+...     +.+.   ..         .-|++    -..+.+.+++++++||||+-+
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            567799999999999999999986532     1110   11         11122    233566789999999999999


Q ss_pred             cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192           74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL  130 (181)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  130 (181)
                      |.-.....++-.|+.++|++....-. ......|.+..+    -++|-|-.+||+|-
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~r----y~vP~i~FiNKmDR  168 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKR----YNVPRICFINKMDR  168 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHh----cCCCeEEEEehhhh
Confidence            99999999999999999999864321 233445555555    37999999999995

>cd01856 YlqF YlqF

Probab=98.56  E-value=9.3e-08  Score=65.66  Aligned_cols=90  Identities=16%  Similarity=0.095  Sum_probs=58.4

Q ss_pred             cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEE
Q 030192           76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI  155 (181)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  155 (181)
                      ........++|.+++|+|+..+.....  ..+...+     .++|.++|+||+|+.+.....+..+.+..     ....+
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-----~~~~v   78 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-----KGEKV   78 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-----cCCeE
Confidence            334556688999999999976543211  1122222     25789999999999644222222222211     12357


Q ss_pred             EEccccCCCChHHHHHHHHHHh
Q 030192          156 QSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       156 ~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      +.+|++++.|++++.+.+...+
T Consensus        79 i~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          79 LFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             EEEECCCcccHHHHHHHHHHHH
Confidence            8899999999999999888764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=1.5e-07  Score=71.08  Aligned_cols=159  Identities=16%  Similarity=0.158  Sum_probs=98.9

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCC-----------------------c-----c------cccCccceeEEEEE
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGE-----------------------I-----V------TTIPTIGFNVETVE   57 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~-----------------------~-----~------~~~~~~~~~~~~~~   57 (181)
                      .+++..+++.++|+..+||||+-.+++...                       +     .      ....|.+.....++
T Consensus        74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE  153 (501)
T KOG0459|consen   74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE  153 (501)
T ss_pred             CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence            345788999999999999999988885310                       0     0      01224444445566


Q ss_pred             ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc---ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192           58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM  134 (181)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  134 (181)
                      -....+.+.|+||+..|-.....-..++|.-++|+++-..   ..|+.--+-...........-...|+++||+|-+.-.
T Consensus       154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn  233 (501)
T KOG0459|consen  154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN  233 (501)
T ss_pred             ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence            6778999999999999887777677889999999998321   1222221111111111111234578999999976421


Q ss_pred             ----CHhHHHhhh----CCCcc-cCcceEEEEccccCCCChHHHH
Q 030192          135 ----NAAEITDKL----GLHSL-RQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus       135 ----~~~~~~~~~----~~~~~-~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                          -.++....+    ....+ -..+..++++|..+|.++.+..
T Consensus       234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence                122222211    11111 2356789999999999987654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.53  E-value=1.3e-06  Score=65.65  Aligned_cols=137  Identities=21%  Similarity=0.266  Sum_probs=75.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC------c--cc--cc------------CccceeEEEE-----------------
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE------I--VT--TI------------PTIGFNVETV-----------------   56 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~------~--~~--~~------------~~~~~~~~~~-----------------   56 (181)
                      ..-.++++|++|+||||++..+...-      .  ..  ..            ...+..+...                 
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            45688999999999999999884311      0  00  00            0111111111                 


Q ss_pred             EECCEEEEEEEcCCCCCcccc----hhhc--------cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEE
Q 030192           57 EYKNISFTVWDVGGQDKIRPL----WRHY--------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF  124 (181)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv  124 (181)
                      ...++.+.++||||.......    ...+        -...+..++|+|++..  .....+ .......    -.+.-+|
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giI  265 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGII  265 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEE
Confidence            114578999999997543221    1111        1357889999999853  222222 2222221    1234789


Q ss_pred             EeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192          125 ANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus       125 ~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +||.|....- ..-.+....+++        +..++  +|++++++
T Consensus       266 lTKlD~t~~~G~~l~~~~~~~~P--------i~~v~--~Gq~~~Dl  301 (318)
T PRK10416        266 LTKLDGTAKGGVVFAIADELGIP--------IKFIG--VGEGIDDL  301 (318)
T ss_pred             EECCCCCCCccHHHHHHHHHCCC--------EEEEe--CCCChhhC
Confidence            9999966432 223444444443        44444  77777665

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.52  E-value=2e-07  Score=61.95  Aligned_cols=79  Identities=13%  Similarity=0.124  Sum_probs=48.9

Q ss_pred             hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEc
Q 030192           79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST  158 (181)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      ...++.+|++++|+|+.++.+..  ...+...+.... .++|+++++||+|+.+.....++.+.+.     ..+..++.+
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~ii~i   77 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVVVFF   77 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeEEEE
Confidence            34567899999999998765432  112222322211 4689999999999865433323333222     223468889


Q ss_pred             cccCCCC
Q 030192          159 CATSGEG  165 (181)
Q Consensus       159 S~~~~~g  165 (181)
                      |++++.+
T Consensus        78 Sa~~~~~   84 (141)
T cd01857          78 SALKENA   84 (141)
T ss_pred             EecCCCc
Confidence            9998763

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.51  E-value=3.8e-07  Score=67.40  Aligned_cols=98  Identities=14%  Similarity=0.099  Sum_probs=63.3

Q ss_pred             CCCC-CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc
Q 030192           69 GGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS  147 (181)
Q Consensus        69 ~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~  147 (181)
                      |||. +..+.....++.+|++++|+|+..+.+...  ..+...+.     ++|+++|+||+|+.+.....++.+.+..  
T Consensus         5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l~-----~kp~IiVlNK~DL~~~~~~~~~~~~~~~--   75 (276)
T TIGR03596         5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIRG-----NKPRLIVLNKADLADPAVTKQWLKYFEE--   75 (276)
T ss_pred             hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHHC-----CCCEEEEEEccccCCHHHHHHHHHHHHH--
Confidence            4542 233445566788999999999976543211  22233332     5799999999999754323333222211  


Q ss_pred             ccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       148 ~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                         .+..++.+|++++.|++++.+.+.+.+.
T Consensus        76 ---~~~~vi~iSa~~~~gi~~L~~~i~~~~~  103 (276)
T TIGR03596        76 ---KGIKALAINAKKGKGVKKIIKAAKKLLK  103 (276)
T ss_pred             ---cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence               1235788999999999999988877654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.51  E-value=1.1e-06  Score=66.31  Aligned_cols=139  Identities=22%  Similarity=0.285  Sum_probs=75.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc----C--Cc--cc-c-c-C-----------ccceeEEEE-----------------
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL----G--EI--VT-T-I-P-----------TIGFNVETV-----------------   56 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~----~--~~--~~-~-~-~-----------~~~~~~~~~-----------------   56 (181)
                      +...|+++|++|+||||++..+..    .  ..  .. + . .           ..+..+...                 
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~  218 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA  218 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence            457899999999999998877743    1  10  00 0 0 0           111111100                 


Q ss_pred             EECCEEEEEEEcCCCCCcccc----hhhc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192           57 EYKNISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL  130 (181)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  130 (181)
                      ...+..+.++||+|.......    ....  ..+.|..++|+|++...........+...+       .+--+|+||.|.
T Consensus       219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~  291 (336)
T PRK14974        219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDA  291 (336)
T ss_pred             HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecC
Confidence            113467999999997643321    1111  125889999999975432222222222221       224789999998


Q ss_pred             CCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192          131 PNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus       131 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      ...-. .-.+....+.        |+..++  +|++++++..
T Consensus       292 ~~~~G~~ls~~~~~~~--------Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        292 DAKGGAALSIAYVIGK--------PILFLG--VGQGYDDLIP  323 (336)
T ss_pred             CCCccHHHHHHHHHCc--------CEEEEe--CCCChhhccc
Confidence            65332 2233333333        344444  7888877643

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.51  E-value=4.6e-07  Score=78.81  Aligned_cols=112  Identities=19%  Similarity=0.239  Sum_probs=63.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCccc-c----cCcccee-EEEEEE-CCEEEEEEEcCCC----C----Ccccchhhcc-
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVT-T----IPTIGFN-VETVEY-KNISFTVWDVGGQ----D----KIRPLWRHYF-   82 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~-~----~~~~~~~-~~~~~~-~~~~~~i~D~~g~----~----~~~~~~~~~~-   82 (181)
                      =.+++|++|+||||++.+-- -.++- .    ..+.+.. ...++. -.-+..++||+|.    +    .....|..++ 
T Consensus       113 WYlviG~~gsGKtt~l~~sg-l~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~  191 (1169)
T TIGR03348       113 WYLVIGPPGSGKTTLLQNSG-LKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG  191 (1169)
T ss_pred             CEEEECCCCCchhHHHHhCC-CCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence            46899999999999999883 33321 1    0111100 001111 1124579999992    1    1223344443 


Q ss_pred             --------ccccEEEEEEECCCcc--cH-------HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           83 --------QNTQGLIFVVDSNDRD--RV-------VEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        83 --------~~~d~~i~v~d~~~~~--s~-------~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                              +..|++|+++|+.+.-  +-       ..+...+.++... .....|+.+++||+|+..
T Consensus       192 ~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       192 LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence                    3499999999986421  11       1222233333332 225799999999999875

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.50  E-value=2e-07  Score=62.80  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      -.++++|++|+|||||+|.|.+..
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            688999999999999999999874

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.49  E-value=3.5e-07  Score=69.50  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEI   42 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~   42 (181)
                      .++|+|++|+|||||||+|.+...
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~  197 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVE  197 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccc
Confidence            489999999999999999997653

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.49  E-value=4.4e-07  Score=61.48  Aligned_cols=65  Identities=18%  Similarity=0.249  Sum_probs=38.6

Q ss_pred             CEEEEEEEcCCCCCcccchhh--------ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192           60 NISFTVWDVGGQDKIRPLWRH--------YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL  130 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  130 (181)
                      +....++|++|-.+-......        ..-..+.++.++|+............+...+....      ++++||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence            356788999996533322211        22358999999998643332212233444444432      789999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=1.4e-07  Score=71.79  Aligned_cols=127  Identities=20%  Similarity=0.165  Sum_probs=90.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC--cc---------------cccCccceeE----EEEEECCEEEEEEEcCCCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV---------------TTIPTIGFNV----ETVEYKNISFTVWDVGGQDK   73 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~---------------~~~~~~~~~~----~~~~~~~~~~~i~D~~g~~~   73 (181)
                      .+-.+|+++.+-.+||||.-.+++...  ..               ......|++.    ..+++.+++++++||||+-+
T Consensus        35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd  114 (753)
T KOG0464|consen   35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD  114 (753)
T ss_pred             hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence            456789999999999999999986421  10               0011222332    45677999999999999999


Q ss_pred             cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCC
Q 030192           74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLH  146 (181)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~~~  146 (181)
                      |+-....+++--|+++.|||.+-.-..+.+ ..|.+.-+    .++|-+.++||+|.....   .++.+.+.++..
T Consensus       115 f~leverclrvldgavav~dasagve~qtl-tvwrqadk----~~ip~~~finkmdk~~anfe~avdsi~ekl~ak  185 (753)
T KOG0464|consen  115 FRLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADK----FKIPAHCFINKMDKLAANFENAVDSIEEKLGAK  185 (753)
T ss_pred             EEEEHHHHHHHhcCeEEEEeccCCccccee-eeehhccc----cCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCc
Confidence            999999999999999999999754333332 33444333    589999999999975432   344555555543

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.47  E-value=6.7e-07  Score=63.38  Aligned_cols=112  Identities=19%  Similarity=0.294  Sum_probs=64.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc----------ccCccceeE--EEEEECC--EEEEEEEcCCCCCc---ccch
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT----------TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKI---RPLW   78 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~----------~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~---~~~~   78 (181)
                      -.++|+++|.+|.||||++|++.......          ...|.++..  +.+..++  .++.++||||-.++   .+.|
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            57899999999999999999997654321          112333322  2233344  46889999992211   1111


Q ss_pred             -----------hhcc--------------ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           79 -----------RHYF--------------QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        79 -----------~~~~--------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                                 ..|+              ...++++|.+..+. .++..++-.+..-+.+    -..++-|+-|.|-.-
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtlT  198 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTLT  198 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeeccccc
Confidence                       1111              14788888888763 2332222222222221    244788889999643

>PRK12288 GTPase RsgA; Reviewed

Probab=98.45  E-value=6.4e-07  Score=68.06  Aligned_cols=54  Identities=15%  Similarity=0.161  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccc--c---------CccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTT--I---------PTIGFNVETVEYKNISFTVWDVGGQDKIR   75 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (181)
                      .++|+|.+|+|||||||+|.+......  .         .|.......+...   ..++||||-..+.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            379999999999999999997653321  1         1222222233222   3599999975544

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.45  E-value=5.4e-07  Score=68.98  Aligned_cols=55  Identities=16%  Similarity=0.361  Sum_probs=36.5

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCc-----c--cccCccceeEEEEEECCEEEEEEEcCCCC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEI-----V--TTIPTIGFNVETVEYKNISFTVWDVGGQD   72 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (181)
                      ..++.++|.+|+|||||+|++.+...     .  +..|.+......+.. +-.+.++||||-.
T Consensus       154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~  215 (360)
T TIGR03597       154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGII  215 (360)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCC
Confidence            46999999999999999999987532     1  223322222333333 1236799999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.43  E-value=3.3e-06  Score=62.22  Aligned_cols=138  Identities=20%  Similarity=0.207  Sum_probs=75.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC------Cc--cc-c-c------------CccceeEEEE-----------------
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG------EI--VT-T-I------------PTIGFNVETV-----------------   56 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~------~~--~~-~-~------------~~~~~~~~~~-----------------   56 (181)
                      +...++++|++|+||||.+..+...      +.  .. + .            ...+......                 
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~  150 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA  150 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence            3467889999999999998888421      10  00 0 0            0111111110                 


Q ss_pred             EECCEEEEEEEcCCCCCcccchh-------hc-----cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEE
Q 030192           57 EYKNISFTVWDVGGQDKIRPLWR-------HY-----FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF  124 (181)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~~~-------~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv  124 (181)
                      ...++.+.++||||.........       ..     -..+|..++|+|++..  .... .......+..    .+--+|
T Consensus       151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~~~~f~~~~----~~~g~I  223 (272)
T TIGR00064       151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQAKVFNEAV----GLTGII  223 (272)
T ss_pred             HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HHHHHHHhhC----CCCEEE
Confidence            01457899999999765332211       11     1248999999999743  2222 2223332211    235789


Q ss_pred             EeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192          125 ANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus       125 ~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      +||.|...... .-.+....+.        |+..++  +|++++++-
T Consensus       224 lTKlDe~~~~G~~l~~~~~~~~--------Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       224 LTKLDGTAKGGIILSIAYELKL--------PIKFIG--VGEKIDDLA  260 (272)
T ss_pred             EEccCCCCCccHHHHHHHHHCc--------CEEEEe--CCCChHhCc
Confidence            99999865432 2244444443        343444  777776653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.42  E-value=5.1e-07  Score=65.51  Aligned_cols=52  Identities=15%  Similarity=0.164  Sum_probs=34.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc--c---------CccceeEEEEEECCEEEEEEEcCCCCC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT--I---------PTIGFNVETVEYKNISFTVWDVGGQDK   73 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (181)
                      ..++++|++|+|||||+|++.+......  .         .|.......+  .  ...++||||-..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~--~~~liDtPG~~~  183 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H--GGLIADTPGFNE  183 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C--CcEEEeCCCccc
Confidence            4789999999999999999987643211  1         1222333333  2  237999999644

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK13796 GTPase YqeH; Provisional

Probab=98.39  E-value=1.2e-06  Score=67.15  Aligned_cols=55  Identities=15%  Similarity=0.352  Sum_probs=35.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC-----cc--cccCccceeEEEEEECCEEEEEEEcCCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE-----IV--TTIPTIGFNVETVEYKNISFTVWDVGGQ   71 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (181)
                      +..++.++|.+|+|||||||++.+..     ..  +..|.+......+...+ ...++||||-
T Consensus       159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi  220 (365)
T PRK13796        159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGI  220 (365)
T ss_pred             CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCc
Confidence            34689999999999999999998643     11  22332222233333221 2479999995

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.37  E-value=1.1e-06  Score=65.29  Aligned_cols=99  Identities=15%  Similarity=0.146  Sum_probs=63.4

Q ss_pred             cCCCC-CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC
Q 030192           68 VGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH  146 (181)
Q Consensus        68 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~  146 (181)
                      .|||. +..+.....+..+|++++|+|+..+.+...  ..+...+.     ++|+++|+||+|+.+....+.+.+.+.  
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~--   77 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE--   77 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH--
Confidence            45542 223344556788999999999976543221  22333332     578999999999965422223322221  


Q ss_pred             cccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       147 ~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                         ..+.+++.+|++++.|++++.+.+...+.
T Consensus        78 ---~~~~~vi~vSa~~~~gi~~L~~~l~~~l~  106 (287)
T PRK09563         78 ---EQGIKALAINAKKGQGVKKILKAAKKLLK  106 (287)
T ss_pred             ---HcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence               11345788999999999999998877654

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=3.8e-07  Score=66.79  Aligned_cols=158  Identities=15%  Similarity=0.150  Sum_probs=92.1

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcc---c-----------------------ccCccceeEEE------------
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV---T-----------------------TIPTIGFNVET------------   55 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~-----------------------~~~~~~~~~~~------------   55 (181)
                      .+..++|+-+|+...||||++.++.+-...   .                       .-|..+. +..            
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~c-y~s~gS~k~d~~~c~  113 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGC-YRSFGSSKEDRPPCD  113 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcch-hhccCCCCCCCCCcc
Confidence            467899999999999999999998652210   0                       0000000 000            


Q ss_pred             EEEC------CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHH--HHHcCCCCCCCeEEEEEeC
Q 030192           56 VEYK------NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH--RMLNEDELRDAVLLVFANK  127 (181)
Q Consensus        56 ~~~~------~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~--~~~~~~~~~~~piivv~nK  127 (181)
                      ..+.      -..+.+.|.||++-.-+....-..--|+.++++..+.++.-....+-+.  ++.+     =+.++++-||
T Consensus       114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~-----LkhiiilQNK  188 (466)
T KOG0466|consen  114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK-----LKHIIILQNK  188 (466)
T ss_pred             cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh-----hceEEEEech
Confidence            0000      0246788999986433322222234678888888765433222222111  1111     1347888899


Q ss_pred             CCCCCCCCHhHHHhhhCCCccc---CcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          128 QDLPNAMNAAEITDKLGLHSLR---QRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       128 ~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      +|+..+....+..+.+. .|.+   ..+.+++++||.-+.|++-+.+++++++.
T Consensus       189 iDli~e~~A~eq~e~I~-kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  189 IDLIKESQALEQHEQIQ-KFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             hhhhhHHHHHHHHHHHH-HHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            99987543222222111 1222   24668999999999999999999998764

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.35  E-value=2.7e-06  Score=66.06  Aligned_cols=109  Identities=21%  Similarity=0.173  Sum_probs=63.4

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc------CCc--ccc---cC-----------ccceeEEEEE-----------------
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL------GEI--VTT---IP-----------TIGFNVETVE-----------------   57 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~------~~~--~~~---~~-----------~~~~~~~~~~-----------------   57 (181)
                      ...|+++|++||||||++..+..      .+.  .+.   .+           ..++.+....                 
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999852      111  000   00           1112212111                 


Q ss_pred             ECCEEEEEEEcCCCCCcccc----hhhc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           58 YKNISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      ..++.+.++||+|.......    ...+  ..+++.+++|+|++..+.-.+....+.+.       -.+--+|+||.|..
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~~  252 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDGH  252 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccCC
Confidence            02578999999996543321    1111  12578899999987543333333333221       23467899999976


Q ss_pred             C
Q 030192          132 N  132 (181)
Q Consensus       132 ~  132 (181)
                      .
T Consensus       253 a  253 (429)
T TIGR01425       253 A  253 (429)
T ss_pred             C
Confidence            4

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.34  E-value=1.3e-06  Score=63.29  Aligned_cols=117  Identities=16%  Similarity=0.258  Sum_probs=76.0

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCcccc-----cCccceeEEEEEE--C--CEEEEEEEcCCCC-------Ccc
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY--K--NISFTVWDVGGQD-------KIR   75 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~--~--~~~~~i~D~~g~~-------~~~   75 (181)
                      ....-.++|+.+|.+|.||||||++|.+-.+...     .|++.....+++.  .  ..++.++||.|-.       .|.
T Consensus        37 v~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk  116 (406)
T KOG3859|consen   37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYK  116 (406)
T ss_pred             HhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccc
Confidence            3345678999999999999999999999877543     3344443333332  2  3578899999821       111


Q ss_pred             c-------chhhcc---------------ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           76 P-------LWRHYF---------------QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        76 ~-------~~~~~~---------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      .       ....|+               ...++.+|.+..+ ..++..+......-+..    +..||-++-|.|-...
T Consensus       117 ~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Lds----kVNIIPvIAKaDtisK  191 (406)
T KOG3859|consen  117 PIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLDS----KVNIIPVIAKADTISK  191 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHhh----hhhhHHHHHHhhhhhH
Confidence            1       111111               2467777777776 56777777666666553    5667888889997654

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.30  E-value=7.8e-07  Score=69.16  Aligned_cols=53  Identities=23%  Similarity=0.249  Sum_probs=41.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccccCcccee--EEEEEECCEEEEEEEcCC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGG   70 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g   70 (181)
                      .+.|++||-||+||||+||.|++.+-.+...|.|-+  ++++.. .-.+-+.|.||
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-s~~v~LCDCPG  368 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-SPSVCLCDCPG  368 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-CCCceecCCCC
Confidence            589999999999999999999999987776666633  233322 34577899999

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.30  E-value=1.9e-05  Score=62.40  Aligned_cols=80  Identities=15%  Similarity=0.284  Sum_probs=52.8

Q ss_pred             EEEEEEcCCC-------------CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030192           62 SFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ  128 (181)
Q Consensus        62 ~~~i~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~  128 (181)
                      +.+++|.||-             +..-.+..+|+.+.+++|+|+--.+.+.....   .-+++.+-.-.+.-.|+|+||.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSn---VTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSI---VTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhh---HHHHHHhcCCCCCeeEEEEeec
Confidence            6889999992             22334578889999999999864433332222   2233333333467899999999


Q ss_pred             CCCCC--CCHhHHHhhhC
Q 030192          129 DLPNA--MNAAEITDKLG  144 (181)
Q Consensus       129 Dl~~~--~~~~~~~~~~~  144 (181)
                      |+++.  .....+.+.+.
T Consensus       490 DlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             chhhhccCCHHHHHHHHh
Confidence            99864  35667777665

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.28  E-value=7.2e-06  Score=54.94  Aligned_cols=58  Identities=12%  Similarity=0.184  Sum_probs=37.1

Q ss_pred             CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030192           60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD  129 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D  129 (181)
                      ++.+.++||+|.....   ..++..+|.+++|....-.+.+.-..-.....         .-++++||.|
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~---------~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKAGIMEI---------ADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhhhHhhh---------cCEEEEeCCC
Confidence            5789999998864322   34778899999998876333443332222111         2388999987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK13796 GTPase YqeH; Provisional

Probab=98.27  E-value=1.5e-06  Score=66.67  Aligned_cols=97  Identities=20%  Similarity=0.174  Sum_probs=56.4

Q ss_pred             CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCc
Q 030192           73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQR  151 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~  151 (181)
                      ++.+.........+.+++|+|+.+...  .....+.+..     .+.|+++|+||+|+..... .+++..... ...+..
T Consensus        58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~-~~~k~~  129 (365)
T PRK13796         58 DFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLR-QEAKEL  129 (365)
T ss_pred             HHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHH-HHHHhc
Confidence            455544444333448999999976431  1122222322     2578999999999965321 222221110 011111


Q ss_pred             ce---EEEEccccCCCChHHHHHHHHHHh
Q 030192          152 HW---YIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       152 ~~---~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      ++   .++.+||+++.|++++++.+.+..
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            21   477899999999999999987653

>PRK01889 GTPase RsgA; Reviewed

Probab=98.26  E-value=8.6e-06  Score=62.33  Aligned_cols=84  Identities=21%  Similarity=0.220  Sum_probs=55.2

Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcccc
Q 030192           82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT  161 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  161 (181)
                      ..++|.+++|+++..+-....+ +.+...+..   .+++.++|+||+|+.+... +........    ..+++++.+|++
T Consensus       110 aANvD~vliV~s~~p~~~~~~l-dr~L~~a~~---~~i~piIVLNK~DL~~~~~-~~~~~~~~~----~~g~~Vi~vSa~  180 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRI-ERYLALAWE---SGAEPVIVLTKADLCEDAE-EKIAEVEAL----APGVPVLAVSAL  180 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHH-HHHHHHHHH---cCCCEEEEEEChhcCCCHH-HHHHHHHHh----CCCCcEEEEECC
Confidence            4789999999999643333333 333333333   4677899999999975411 111121111    335678899999


Q ss_pred             CCCChHHHHHHHH
Q 030192          162 SGEGLYEGLDWLS  174 (181)
Q Consensus       162 ~~~gv~~~~~~i~  174 (181)
                      ++.|++++..++.
T Consensus       181 ~g~gl~~L~~~L~  193 (356)
T PRK01889        181 DGEGLDVLAAWLS  193 (356)
T ss_pred             CCccHHHHHHHhh
Confidence            9999999988774

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.23  E-value=4.2e-05  Score=51.23  Aligned_cols=146  Identities=20%  Similarity=0.277  Sum_probs=73.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE--CCEEEEEEEcC-CCCC------------------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY--KNISFTVWDVG-GQDK------------------   73 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~-g~~~------------------   73 (181)
                      +..++|.+.|+||+||||++.++...--.....--|+-...+..  ...-|.+.|+. |...                  
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~   82 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN   82 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence            45689999999999999999888632111111222222222222  23456666665 2110                  


Q ss_pred             ---cc----cchhhccccccEEEEEEECCCccc--HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC
Q 030192           74 ---IR----PLWRHYFQNTQGLIFVVDSNDRDR--VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG  144 (181)
Q Consensus        74 ---~~----~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~  144 (181)
                         +.    .....+++.+|++++  |=-.+=.  -..........+.    ..+|.|..+.+.+- ++ -.+++.....
T Consensus        83 v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl~----~~kpliatlHrrsr-~P-~v~~ik~~~~  154 (179)
T COG1618          83 VEGLEEIAIPALRRALEEADVIII--DEIGPMELKSKKFREAVEEVLK----SGKPLIATLHRRSR-HP-LVQRIKKLGG  154 (179)
T ss_pred             HHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhccHHHHHHHHHHhc----CCCcEEEEEecccC-Ch-HHHHhhhcCC
Confidence               11    112223344666554  4221111  1233334444444    47888888887653 11 1223322211


Q ss_pred             CCcccCcceEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192          145 LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       145 ~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                              +.+|    .+.+|-+.+++.+...|...
T Consensus       155 --------v~v~----lt~~NR~~i~~~Il~~L~~~  178 (179)
T COG1618         155 --------VYVF----LTPENRNRILNEILSVLKGE  178 (179)
T ss_pred             --------EEEE----EccchhhHHHHHHHHHhccC
Confidence                    1232    45566668888888877643

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.22  E-value=5.1e-06  Score=62.71  Aligned_cols=151  Identities=20%  Similarity=0.148  Sum_probs=88.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-----------------cc--cCccceeEEEEE--------------------
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-----------------TT--IPTIGFNVETVE--------------------   57 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-----------------~~--~~~~~~~~~~~~--------------------   57 (181)
                      ..+|+++|...+|||||+-.|.+....                 +.  ..+.+.+.--++                    
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            358999999999999999988764321                 00  112221111110                    


Q ss_pred             ---ECCEEEEEEEcCCCCCcccchhhcc--ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           58 ---YKNISFTVWDVGGQDKIRPLWRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        58 ---~~~~~~~i~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                         ...--+.++|.+|+++|.+....-+  .-.|.-++++-++-.     +...-.+.+...-....|+.+|+||+|+..
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-----IiGmTKEHLgLALaL~VPVfvVVTKIDMCP  287 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-----IIGMTKEHLGLALALHVPVFVVVTKIDMCP  287 (641)
T ss_pred             eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-----ceeccHHhhhhhhhhcCcEEEEEEeeccCc
Confidence               1122477899999999886543322  236777777776421     111111222222224799999999999876


Q ss_pred             CCCHhHH----HhhhCC---------------------CcccCcceEEEEccccCCCChHHHHHH
Q 030192          133 AMNAAEI----TDKLGL---------------------HSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus       133 ~~~~~~~----~~~~~~---------------------~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      ...+++-    .+.+..                     .+-...-+++|.+|-.+|.|++-+...
T Consensus       288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF  352 (641)
T KOG0463|consen  288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF  352 (641)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence            5433332    222211                     122234578999999999998765443

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.21  E-value=5.2e-06  Score=61.71  Aligned_cols=57  Identities=19%  Similarity=0.173  Sum_probs=35.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc--cC-------ccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT--IP-------TIGFNVETVEYKNISFTVWDVGGQDKIR   75 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (181)
                      ..++++|++|+|||||+|.+.+......  .+       .+......+.... ...++||||..++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence            5799999999999999999987653321  11       0111112222221 23699999986554

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.19  E-value=4.4e-06  Score=57.75  Aligned_cols=108  Identities=20%  Similarity=0.265  Sum_probs=65.8

Q ss_pred             EEEEcCCCCChHHHHhhHhc-C----C-------ccc------ccCccceeEEEEEE---------------------C-
Q 030192           20 ILMVGLDAAGKTTILYKLKL-G----E-------IVT------TIPTIGFNVETVEY---------------------K-   59 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~-~----~-------~~~------~~~~~~~~~~~~~~---------------------~-   59 (181)
                      +++.|.-|||||||+++++. .    +       +.+      .....+.....+..                     . 
T Consensus         3 ~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~   82 (178)
T PF02492_consen    3 IIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYE   82 (178)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcC
Confidence            57899999999999999983 1    1       110      00111222222211                     2 


Q ss_pred             -CEEEEEEEcCCCCCcccc------hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           60 -NISFTVWDVGGQDKIRPL------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        60 -~~~~~i~D~~g~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                       .....++++.|...-...      ... .-..+.++.|+|+.+..........+...+....      ++++||+|+.+
T Consensus        83 ~~~d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~  155 (178)
T PF02492_consen   83 ERPDRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVS  155 (178)
T ss_dssp             GC-SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHH
T ss_pred             CCcCEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCC
Confidence             357788899996544443      111 1248899999999765444555666677777654      89999999876


Q ss_pred             CC
Q 030192          133 AM  134 (181)
Q Consensus       133 ~~  134 (181)
                      .+
T Consensus       156 ~~  157 (178)
T PF02492_consen  156 DE  157 (178)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.19  E-value=5.2e-06  Score=62.02  Aligned_cols=26  Identities=23%  Similarity=0.267  Sum_probs=22.6

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEI   42 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~   42 (181)
                      ...++++|++|+|||||+|.+.+...
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~~  189 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDLE  189 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcC
Confidence            45789999999999999999987653

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.19  E-value=2.6e-06  Score=59.70  Aligned_cols=109  Identities=17%  Similarity=0.190  Sum_probs=60.0

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCc--------c--ccc------------CccceeEEEE-----------------EE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEI--------V--TTI------------PTIGFNVETV-----------------EY   58 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~--------~--~~~------------~~~~~~~~~~-----------------~~   58 (181)
                      ..++++|++|+||||.+-++.....        .  ...            ...++.+...                 ..
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~   81 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK   81 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence            3589999999999999988842110        0  000            0122222111                 11


Q ss_pred             CCEEEEEEEcCCCCCcccc----hhhccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           59 KNISFTVWDVGGQDKIRPL----WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      ++.++.++||+|.......    ...+.+  ..+-+++|++++....-......+.+.+.       +-=+++||.|...
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~-------~~~lIlTKlDet~  154 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFG-------IDGLILTKLDETA  154 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSS-------TCEEEEESTTSSS
T ss_pred             cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhccc-------CceEEEEeecCCC
Confidence            3477999999997654422    112211  57889999999754322222222222221       1257799999865


Q ss_pred             C
Q 030192          133 A  133 (181)
Q Consensus       133 ~  133 (181)
                      .
T Consensus       155 ~  155 (196)
T PF00448_consen  155 R  155 (196)
T ss_dssp             T
T ss_pred             C
Confidence            4

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.15  E-value=2.1e-05  Score=60.19  Aligned_cols=119  Identities=15%  Similarity=0.148  Sum_probs=66.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc----------c--ccC------------ccceeEEEEE-----------EC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV----------T--TIP------------TIGFNVETVE-----------YK   59 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~----------~--~~~------------~~~~~~~~~~-----------~~   59 (181)
                      .+.-.++++|++|+||||++..|......          .  ...            ..+.......           ..
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~  214 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR  214 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence            34568999999999999999999542110          0  000            0122222111           14


Q ss_pred             CEEEEEEEcCCCCCcccch----hh--ccccccEEEEEEECCC-cccHHHHHHHHHHHHcCCCCCC-CeEEEEEeCCCCC
Q 030192           60 NISFTVWDVGGQDKIRPLW----RH--YFQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLP  131 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~Dl~  131 (181)
                      +..+.++||+|........    ..  ......-.++|++++. .+........+..........- .+-=+|+||.|..
T Consensus       215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt  294 (374)
T PRK14722        215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA  294 (374)
T ss_pred             CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence            5689999999976543321    11  1123456688999875 3344445454544432211000 1235778999986


Q ss_pred             CC
Q 030192          132 NA  133 (181)
Q Consensus       132 ~~  133 (181)
                      ..
T Consensus       295 ~~  296 (374)
T PRK14722        295 SN  296 (374)
T ss_pred             CC
Confidence            53

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.12  E-value=3.6e-05  Score=57.95  Aligned_cols=132  Identities=20%  Similarity=0.191  Sum_probs=74.5

Q ss_pred             EEEEcCCCCChHHHHhhHhcCCccc--------------c----cC---------ccceeEEEEEE-------------C
Q 030192           20 ILMVGLDAAGKTTILYKLKLGEIVT--------------T----IP---------TIGFNVETVEY-------------K   59 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~~~~~--------------~----~~---------~~~~~~~~~~~-------------~   59 (181)
                      .++-|-=||||||++++++.+....              .    ..         +.|+...++..             +
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~   83 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD   83 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence            4677889999999999997643210              0    00         12222222111             2


Q ss_pred             CEEEEEEEcCCCCCcccchhhcc--------ccccEEEEEEECCCcccH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192           60 NISFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDL  130 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  130 (181)
                      .....++++.|-..-......+.        -..|+++-|+|+...... ....+.+.+.+....      ++++||.|+
T Consensus        84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD------~ivlNK~Dl  157 (323)
T COG0523          84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD------VIVLNKTDL  157 (323)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc------EEEEecccC
Confidence            35677888888543322211111        247889999999754332 224445555555433      899999999


Q ss_pred             CCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192          131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      .++...+.++..+...   +...+++.+|.
T Consensus       158 v~~~~l~~l~~~l~~l---np~A~i~~~~~  184 (323)
T COG0523         158 VDAEELEALEARLRKL---NPRARIIETSY  184 (323)
T ss_pred             CCHHHHHHHHHHHHHh---CCCCeEEEccc
Confidence            9876544444433211   22335666655

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.11  E-value=2.7e-05  Score=53.44  Aligned_cols=67  Identities=15%  Similarity=0.165  Sum_probs=39.2

Q ss_pred             CEEEEEEEcCCCCCcccch----hhc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           60 NISFTVWDVGGQDKIRPLW----RHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      +..+.++|++|........    ..+  ....+.+++|+|.......   .+.........   + ..-+|.||.|....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~---~-~~~viltk~D~~~~  154 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL---G-ITGVILTKLDGDAR  154 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence            4568899999975432211    111  1248999999998654322   23333332221   1 25677799997653

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.09  E-value=0.00013  Score=49.93  Aligned_cols=132  Identities=20%  Similarity=0.361  Sum_probs=62.3

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE--CCEEEEEEEc-CCC----------------------CC
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY--KNISFTVWDV-GGQ----------------------DK   73 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~-~g~----------------------~~   73 (181)
                      +|.+.|++|+||||++.++...-.....+..|+....+..  ...-|.+.|. .|.                      +.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~   80 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES   80 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence            6899999999999999998754322222333333322222  1233445554 220                      00


Q ss_pred             cccc----hhhccccccEEEEEEECCC-cc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc
Q 030192           74 IRPL----WRHYFQNTQGLIFVVDSND-RD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS  147 (181)
Q Consensus        74 ~~~~----~~~~~~~~d~~i~v~d~~~-~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~  147 (181)
                      +...    ....+..+|  ++|+|=-. .+ .-....+.+..++.    .++|++.++.+.-  .....++++..-..  
T Consensus        81 fe~~~~~~L~~~~~~~~--liviDEIG~mEl~~~~F~~~v~~~l~----s~~~vi~vv~~~~--~~~~l~~i~~~~~~--  150 (168)
T PF03266_consen   81 FEEIGLPALRNALSSSD--LIVIDEIGKMELKSPGFREAVEKLLD----SNKPVIGVVHKRS--DNPFLEEIKRRPDV--  150 (168)
T ss_dssp             HHCCCCCCCHHHHHCCH--EEEE---STTCCC-CHHHHHHHHHHC----TTSEEEEE--SS----SCCHHHHHTTTTS--
T ss_pred             HHHHHHHHHHhhcCCCC--EEEEeccchhhhcCHHHHHHHHHHHc----CCCcEEEEEecCC--CcHHHHHHHhCCCc--
Confidence            1111    111123455  67777321 11 11334444555555    4788999888872  13345666654443  


Q ss_pred             ccCcceEEEEccccCCCCh
Q 030192          148 LRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus       148 ~~~~~~~~~~~S~~~~~gv  166 (181)
                            .+++++..+..-+
T Consensus       151 ------~i~~vt~~NRd~l  163 (168)
T PF03266_consen  151 ------KIFEVTEENRDAL  163 (168)
T ss_dssp             ------EEEE--TTTCCCH
T ss_pred             ------EEEEeChhHHhhH
Confidence                  4666665555443

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.08  E-value=5.5e-06  Score=61.03  Aligned_cols=54  Identities=15%  Similarity=0.087  Sum_probs=34.3

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc------cc-----cCccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV------TT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIR   75 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~------~~-----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (181)
                      ..+++|.+|+|||||+|+|....-.      ..     ..|.......+...   -.++||||-..+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence            7789999999999999999864321      11     11222222333222   3789999975544

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.05  E-value=3.8e-06  Score=58.50  Aligned_cols=79  Identities=16%  Similarity=0.237  Sum_probs=42.7

Q ss_pred             EEEEEEEcCCCCCcccc---hhhc---ccc---ccEEEEEEECCC---c-ccHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 030192           61 ISFTVWDVGGQDKIRPL---WRHY---FQN---TQGLIFVVDSND---R-DRVVEARDELHRMLNEDELRDAVLLVFANK  127 (181)
Q Consensus        61 ~~~~i~D~~g~~~~~~~---~~~~---~~~---~d~~i~v~d~~~---~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK  127 (181)
                      -.+-++|.||+-+....   .+..   +.+   --++++++|+--   . .-+......+...+.    ...|.|=|++|
T Consensus        98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsK  173 (273)
T KOG1534|consen   98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSK  173 (273)
T ss_pred             CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence            35789999997543221   1111   111   123455555421   1 112333334444444    36899999999


Q ss_pred             CCCCCCCCHhHHHhhh
Q 030192          128 QDLPNAMNAAEITDKL  143 (181)
Q Consensus       128 ~Dl~~~~~~~~~~~~~  143 (181)
                      .|+......+++.+-+
T Consensus       174 MDLlk~~~k~~l~~Fl  189 (273)
T KOG1534|consen  174 MDLLKDKNKKELERFL  189 (273)
T ss_pred             HHHhhhhhHHHHHHhc
Confidence            9998765555555544

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.03  E-value=3.4e-06  Score=63.84  Aligned_cols=55  Identities=20%  Similarity=0.335  Sum_probs=43.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE--EEEEECCEEEEEEEcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGG   70 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g   70 (181)
                      ++.++++|+|-||+||||+||+|...+.+...++.|++-  ..+. -+-.+.+.|.||
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~-Ldk~i~llDsPg  306 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK-LDKKIRLLDSPG  306 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee-ccCCceeccCCc
Confidence            578999999999999999999999998876666555543  2222 345688999998

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.02  E-value=8.9e-05  Score=57.10  Aligned_cols=140  Identities=17%  Similarity=0.237  Sum_probs=76.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC-----------------Ccccc-----cCccceeE-----EEEE---ECCEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG-----------------EIVTT-----IPTIGFNV-----ETVE---YKNISFT   64 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~-----------------~~~~~-----~~~~~~~~-----~~~~---~~~~~~~   64 (181)
                      ...+=+++|||..+||||||.||+.-                 ..+..     ..|++..+     ..+.   .-.++++
T Consensus        15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR   94 (492)
T PF09547_consen   15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR   94 (492)
T ss_pred             CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence            46688999999999999999999641                 11111     11222221     1222   2356888


Q ss_pred             EEEcCC--------CCC--cccc----hhh---------------cc--ccccEEEEEEECC----CcccHHHHHHHHHH
Q 030192           65 VWDVGG--------QDK--IRPL----WRH---------------YF--QNTQGLIFVVDSN----DRDRVVEARDELHR  109 (181)
Q Consensus        65 i~D~~g--------~~~--~~~~----~~~---------------~~--~~~d~~i~v~d~~----~~~s~~~~~~~~~~  109 (181)
                      ++|..|        +.+  ..++    |..               ..  ...=++++.-|.+    .++.|..+.+....
T Consensus        95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~  174 (492)
T PF09547_consen   95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE  174 (492)
T ss_pred             EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence            888766        110  0000    000               00  1244555555543    24567666666666


Q ss_pred             HHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192          110 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus       110 ~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      .++.   -++|.++++|-.+-..+ +..+++..+..    +++++++.+++..
T Consensus       175 ELk~---igKPFvillNs~~P~s~-et~~L~~eL~e----kY~vpVlpvnc~~  219 (492)
T PF09547_consen  175 ELKE---IGKPFVILLNSTKPYSE-ETQELAEELEE----KYDVPVLPVNCEQ  219 (492)
T ss_pred             HHHH---hCCCEEEEEeCCCCCCH-HHHHHHHHHHH----HhCCcEEEeehHH
Confidence            6665   58999999998873322 22233333322    2445566666554

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.98  E-value=0.0001  Score=56.56  Aligned_cols=111  Identities=16%  Similarity=0.245  Sum_probs=63.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCc-ccccC-----------------------ccceeEEEE-----------EECC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIP-----------------------TIGFNVETV-----------EYKN   60 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~-----------------------~~~~~~~~~-----------~~~~   60 (181)
                      +.-.|+++||+|+||||-+-.|..... ....+                       -+++....+           ....
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~  281 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD  281 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence            477899999999999998888743221 00011                       111111111           1145


Q ss_pred             EEEEEEEcCCCCCcccc----hhhccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           61 ISFTVWDVGGQDKIRPL----WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        61 ~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      +.+.++||.|...+...    ...++.  ...-+.+|++++..  ...+...+..+..-     ..-=+++||.|....
T Consensus       282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----~i~~~I~TKlDET~s  353 (407)
T COG1419         282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----PIDGLIFTKLDETTS  353 (407)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----CcceeEEEcccccCc
Confidence            68999999998765543    333333  24455567887643  34444444443221     122578899997653

>PRK13695 putative NTPase; Provisional

Probab=97.98  E-value=0.00018  Score=49.47  Aligned_cols=22  Identities=36%  Similarity=0.539  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++|++.|++|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998643

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=2.1e-05  Score=60.43  Aligned_cols=124  Identities=17%  Similarity=0.183  Sum_probs=67.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC--------cccc--c------------CccceeEEEEE--------------EC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE--------IVTT--I------------PTIGFNVETVE--------------YK   59 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~--------~~~~--~------------~~~~~~~~~~~--------------~~   59 (181)
                      +...|+++|++|+||||++..|...-        +...  .            ...++.+....              ..
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence            44689999999999999999995311        0000  0            01112211110              01


Q ss_pred             CEEEEEEEcCCCCCcccc----hhhcc--ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      +..+.++||+|.......    ....+  ...+.+++|+|++..  ..........+..     -.+-=+|+||.|....
T Consensus       320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~k  392 (436)
T PRK11889        320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS  392 (436)
T ss_pred             CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence            468999999997543221    22222  246778899987532  2233333323211     1224688999998764


Q ss_pred             C-CHhHHHhhhCCC
Q 030192          134 M-NAAEITDKLGLH  146 (181)
Q Consensus       134 ~-~~~~~~~~~~~~  146 (181)
                      - ..-.+....+++
T Consensus       393 ~G~iLni~~~~~lP  406 (436)
T PRK11889        393 SGELLKIPAVSSAP  406 (436)
T ss_pred             ccHHHHHHHHHCcC
Confidence            3 233455555554

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.95  E-value=3.7e-06  Score=63.74  Aligned_cols=85  Identities=15%  Similarity=0.137  Sum_probs=53.4

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE-EEEEECCEEEEEEEcCCCCCc--ccchhhccccccEE
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-ETVEYKNISFTVWDVGGQDKI--RPLWRHYFQNTQGL   88 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~~--~~~~~~~~~~~d~~   88 (181)
                      .+.++.+-|+++|-||+||||+||+|...+.+...|..|.+- ..+-.--.++-++|.||--.-  .......   ..++
T Consensus       302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~dset~iv---LkGv  378 (572)
T KOG2423|consen  302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSSDSETDIV---LKGV  378 (572)
T ss_pred             ccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCCCchHHHH---hhce
Confidence            346789999999999999999999999998887666544321 111111235678899984221  1222222   2345


Q ss_pred             EEEEECCCccc
Q 030192           89 IFVVDSNDRDR   99 (181)
Q Consensus        89 i~v~d~~~~~s   99 (181)
                      +=|=++.+++.
T Consensus       379 VRVenv~~pe~  389 (572)
T KOG2423|consen  379 VRVENVKNPED  389 (572)
T ss_pred             eeeeecCCHHH
Confidence            55556655543

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.95  E-value=3.6e-05  Score=56.78  Aligned_cols=88  Identities=24%  Similarity=0.203  Sum_probs=61.6

Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      .+.|-.++|+.+.+|+--......+.-....   .++..++++||+|+.+.+....   ......++..+++++.+|+++
T Consensus        78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~---~~~~~~y~~~gy~v~~~s~~~  151 (301)
T COG1162          78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV---KELLREYEDIGYPVLFVSAKN  151 (301)
T ss_pred             cccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH---HHHHHHHHhCCeeEEEecCcC
Confidence            3477778888887776555555555555444   5677788899999987654443   112234455677899999999


Q ss_pred             CCChHHHHHHHHHH
Q 030192          163 GEGLYEGLDWLSNN  176 (181)
Q Consensus       163 ~~gv~~~~~~i~~~  176 (181)
                      +.|++++...+...
T Consensus       152 ~~~~~~l~~~l~~~  165 (301)
T COG1162         152 GDGLEELAELLAGK  165 (301)
T ss_pred             cccHHHHHHHhcCC
Confidence            99999998877543

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.93  E-value=9.7e-05  Score=45.20  Aligned_cols=97  Identities=20%  Similarity=0.120  Sum_probs=55.7

Q ss_pred             EEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccc-hhhccccccEEEEEEECCCcc
Q 030192           20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSNDRD   98 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~   98 (181)
                      +.+.|..|+|||++...+...-..     .+.....+.    .+.++|+++....... .......+|.++++++.... 
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~-   71 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL-   71 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-
Confidence            678899999999999888643221     111221122    7899999987544431 13455679999999988632 


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030192           99 RVVEARDELHRMLNEDELRDAVLLVFAN  126 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piivv~n  126 (181)
                      +....................+..++.|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          72 AVLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence            3333333322222222223455555544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.92  E-value=3.6e-05  Score=57.96  Aligned_cols=67  Identities=16%  Similarity=0.266  Sum_probs=38.7

Q ss_pred             EEEEEEEcCCCCCcccchhhccc--------cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           61 ISFTVWDVGGQDKIRPLWRHYFQ--------NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      ....++++.|...-..+...++.        ..++++.|+|+.+-.............+....      ++++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD------~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD------RILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCC------EEEEeccccCC
Confidence            56678899997654443332211        36889999999643221111112223333322      89999999875


Q ss_pred             C
Q 030192          133 A  133 (181)
Q Consensus       133 ~  133 (181)
                      .
T Consensus       165 ~  165 (318)
T PRK11537        165 E  165 (318)
T ss_pred             H
Confidence            3

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.86  E-value=9.7e-05  Score=58.84  Aligned_cols=112  Identities=21%  Similarity=0.290  Sum_probs=61.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC--------Cc--ccccC--------------ccceeEEEEE-----------EC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG--------EI--VTTIP--------------TIGFNVETVE-----------YK   59 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~--------~~--~~~~~--------------~~~~~~~~~~-----------~~   59 (181)
                      +..-.++|+|++|+||||++..|...        +.  ....+              ..++.+....           ..
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~  427 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR  427 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence            34568999999999999999888531        11  01000              1112121111           13


Q ss_pred             CEEEEEEEcCCCCCcccchhh---ccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           60 NISFTVWDVGGQDKIRPLWRH---YFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      ++.+.++||+|..........   .+.  .....++|++.+.  +.......+..+..     ..+.-+|+||.|....
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~  499 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETGR  499 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCccc
Confidence            578999999996543322110   011  1234667778753  33344433333322     2356799999998553

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.86  E-value=0.00012  Score=57.40  Aligned_cols=110  Identities=21%  Similarity=0.274  Sum_probs=60.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC------Cc-----ccccC-----------ccceeEEEEE---------------E
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG------EI-----VTTIP-----------TIGFNVETVE---------------Y   58 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~------~~-----~~~~~-----------~~~~~~~~~~---------------~   58 (181)
                      ....|+++|++|+||||++..+...      +.     ....+           ..+..+....               .
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~  173 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF  173 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence            4668999999999999998888421      10     00001           0111111100               0


Q ss_pred             CCEEEEEEEcCCCCCcccch----h--hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           59 KNISFTVWDVGGQDKIRPLW----R--HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      ....+.++||+|........    .  .....+|.+++|+|++...   +.......+...    -...-+|+||.|...
T Consensus       174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~a  246 (437)
T PRK00771        174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGTA  246 (437)
T ss_pred             hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCCC
Confidence            23478999999976543221    1  1123689999999987542   222222222111    112357789999754

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.82  E-value=2.9e-05  Score=42.60  Aligned_cols=44  Identities=16%  Similarity=0.266  Sum_probs=27.9

Q ss_pred             cccEEEEEEECCCccc--HHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030192           84 NTQGLIFVVDSNDRDR--VVEARDELHRMLNEDELRDAVLLVFANKQD  129 (181)
Q Consensus        84 ~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piivv~nK~D  129 (181)
                      -.++++|++|++..+.  .+.....+.++....  .++|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence            3789999999997655  455556666665542  3899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=8.6e-05  Score=56.86  Aligned_cols=124  Identities=16%  Similarity=0.189  Sum_probs=66.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC--------ccc--ccC------------ccceeEEEEE--------------EC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE--------IVT--TIP------------TIGFNVETVE--------------YK   59 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~--------~~~--~~~------------~~~~~~~~~~--------------~~   59 (181)
                      ..-.++++|++|+||||++..+...-        +.+  ...            ..++.+....              ..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            45678999999999999999885311        000  000            1111111110              02


Q ss_pred             CEEEEEEEcCCCCCcccc----hhhccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           60 NISFTVWDVGGQDKIRPL----WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      ++.+.++||+|.......    ...+..  ..+.+++|.+++  .........+..+ .    .-.+--+|+||.|....
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f-~----~l~i~glI~TKLDET~~  357 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKL-A----EIPIDGFIITKMDETTR  357 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhc-C----cCCCCEEEEEcccCCCC
Confidence            478999999997553322    122222  356667777663  2233333333221 1    11234688999998654


Q ss_pred             C-CHhHHHhhhCCC
Q 030192          134 M-NAAEITDKLGLH  146 (181)
Q Consensus       134 ~-~~~~~~~~~~~~  146 (181)
                      - ..-.+....+++
T Consensus       358 ~G~~Lsv~~~tglP  371 (407)
T PRK12726        358 IGDLYTVMQETNLP  371 (407)
T ss_pred             ccHHHHHHHHHCCC
Confidence            3 223444445544

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=8.8e-05  Score=64.04  Aligned_cols=112  Identities=18%  Similarity=0.242  Sum_probs=63.4

Q ss_pred             EEEEcCCCCChHHHHhhHhcCCccc-c---cCccceeEEEEEE-CCEEEEEEEcCCC--------CCcccchhhc-----
Q 030192           20 ILMVGLDAAGKTTILYKLKLGEIVT-T---IPTIGFNVETVEY-KNISFTVWDVGGQ--------DKIRPLWRHY-----   81 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~~~~~-~---~~~~~~~~~~~~~-~~~~~~i~D~~g~--------~~~~~~~~~~-----   81 (181)
                      -+++|++|+||||++..-....... .   ....+......+. -.-+-.++||.|.        +.....|..+     
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLk  207 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLK  207 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHHH
Confidence            5899999999999987664433221 1   0111110111111 2335689999982        1223345443     


Q ss_pred             ----cccccEEEEEEECCCcc---cH------HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           82 ----FQNTQGLIFVVDSNDRD---RV------VEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        82 ----~~~~d~~i~v~d~~~~~---s~------~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                          .+..|++|+.+|+.+.-   .-      ..+...+.++..... -..|+++++||.|+..
T Consensus       208 k~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         208 KYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEecccccc
Confidence                23599999999985421   11      112223333333322 4689999999999876

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.81  E-value=9.2e-05  Score=56.37  Aligned_cols=77  Identities=21%  Similarity=0.296  Sum_probs=44.5

Q ss_pred             EEEEEEEcCCCCCcccchhhcc-------ccccEEEEEEECCCccc--H--------------------HHHHHHHHHHH
Q 030192           61 ISFTVWDVGGQDKIRPLWRHYF-------QNTQGLIFVVDSNDRDR--V--------------------VEARDELHRML  111 (181)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~--------------------~~~~~~~~~~~  111 (181)
                      ....++++.|...-..+...+.       -..|+++.|+|+.+-..  +                    ......+...+
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi  172 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL  172 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence            4677889999665443333221       14788999999864211  0                    01122333444


Q ss_pred             cCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030192          112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKL  143 (181)
Q Consensus       112 ~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~  143 (181)
                      ....      ++++||+|+.+....+++...+
T Consensus       173 ~~AD------~IvlnK~Dl~~~~~l~~~~~~l  198 (341)
T TIGR02475       173 ACAD------LVILNKADLLDAAGLARVRAEI  198 (341)
T ss_pred             HhCC------EEEEeccccCCHHHHHHHHHHH
Confidence            4332      8999999998765555544433

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.81  E-value=0.00013  Score=53.93  Aligned_cols=112  Identities=11%  Similarity=0.107  Sum_probs=64.6

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCC-----------
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK-----------   73 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-----------   73 (181)
                      +..++......+-.+++++|++|.|||+++++|.........+.         .....+..+.+|....           
T Consensus        49 L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~  119 (302)
T PF05621_consen   49 LEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------AERIPVVYVQMPPEPDERRFYSAILEA  119 (302)
T ss_pred             HHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------CccccEEEEecCCCCChHHHHHHHHHH
Confidence            34455555556778999999999999999999987654322211         1123556666654211           


Q ss_pred             -------------cccchhhccccccEEEEEEECC-C--cccHHHH---HHHHHHHHcCCCCCCCeEEEEEeCC
Q 030192           74 -------------IRPLWRHYFQNTQGLIFVVDSN-D--RDRVVEA---RDELHRMLNEDELRDAVLLVFANKQ  128 (181)
Q Consensus        74 -------------~~~~~~~~~~~~d~~i~v~d~~-~--~~s~~~~---~~~~~~~~~~~~~~~~piivv~nK~  128 (181)
                                   ........++....=++++|=- +  .-+....   .+.+..+.+   ..++|+|.+|++-
T Consensus       120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N---eL~ipiV~vGt~~  190 (302)
T PF05621_consen  120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN---ELQIPIVGVGTRE  190 (302)
T ss_pred             hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh---ccCCCeEEeccHH
Confidence                         1122335566778888888831 1  0112222   222222222   2568999998763

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.75  E-value=0.00023  Score=55.75  Aligned_cols=110  Identities=19%  Similarity=0.228  Sum_probs=60.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCC------c-c---cccC--------------ccceeEEEE-----------EECCE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGE------I-V---TTIP--------------TIGFNVETV-----------EYKNI   61 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~------~-~---~~~~--------------~~~~~~~~~-----------~~~~~   61 (181)
                      .-.++|+|++|+||||++..|....      . .   +..+              ..++.+...           ...+.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~  300 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC  300 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence            3478999999999999877773211      0 0   0111              011111110           11357


Q ss_pred             EEEEEEcCCCCCcc----cchhhccc---cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           62 SFTVWDVGGQDKIR----PLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        62 ~~~i~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      .+.++||+|.....    .....++.   ...-..+|++++..  ...+.+.+..+-.    .+ +--+++||.|....
T Consensus       301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~----~~-~~~vI~TKlDet~~  372 (424)
T PRK05703        301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR----LP-LDGLIFTKLDETSS  372 (424)
T ss_pred             CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC----CC-CCEEEEeccccccc
Confidence            89999999975543    12222323   34567788888532  2333343333321    11 23688999998654

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.73  E-value=4.7e-05  Score=59.21  Aligned_cols=111  Identities=13%  Similarity=0.139  Sum_probs=61.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCc-----cc-------cc------------CccceeEEEE-----------EECC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEI-----VT-------TI------------PTIGFNVETV-----------EYKN   60 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~-----~~-------~~------------~~~~~~~~~~-----------~~~~   60 (181)
                      ..-.++++|++|+||||++..+.+...     ..       ..            ...++.....           ...+
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            455899999999999999997754210     00       00            0111111110           1145


Q ss_pred             EEEEEEEcCCCCCccc----chhhcc--ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           61 ISFTVWDVGGQDKIRP----LWRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        61 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      ....++||+|......    ....+.  ...+-.++|+|++..  ...+.+.+..+..     -.+-=+|+||.|....
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~~  341 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAAS  341 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCCC
Confidence            6789999999654322    122221  234567889998732  2333333333211     1223578899998653

>PRK10867 signal recognition particle protein; Provisional

Probab=97.72  E-value=0.00027  Score=55.34  Aligned_cols=80  Identities=18%  Similarity=0.123  Sum_probs=42.9

Q ss_pred             CEEEEEEEcCCCCCcccc----hhhc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           60 NISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      ++.+.++||+|.......    ...+  .-..+.+++|+|++..   ++..+....+....    ...-+|+||.|....
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~----~i~giIlTKlD~~~r  255 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL----GLTGVILTKLDGDAR  255 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC----CCCEEEEeCccCccc
Confidence            467999999996543221    1111  1257888999998643   33333333332211    123577799996432


Q ss_pred             C-CHhHHHhhhCCC
Q 030192          134 M-NAAEITDKLGLH  146 (181)
Q Consensus       134 ~-~~~~~~~~~~~~  146 (181)
                      . ....+....+.+
T Consensus       256 gG~alsi~~~~~~P  269 (433)
T PRK10867        256 GGAALSIRAVTGKP  269 (433)
T ss_pred             ccHHHHHHHHHCcC
Confidence            2 233444444443

>TIGR00959 ffh signal recognition particle protein

Probab=97.70  E-value=0.00012  Score=57.26  Aligned_cols=81  Identities=16%  Similarity=0.134  Sum_probs=43.9

Q ss_pred             CCEEEEEEEcCCCCCcccc----hhhc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           59 KNISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      .++.+.++||+|.......    ...+  .-+.+.+++|+|++..   +........+....    ...=+|+||.|...
T Consensus       181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~~  253 (428)
T TIGR00959       181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGDA  253 (428)
T ss_pred             cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCcc
Confidence            3467999999996543221    1111  2258899999998744   23333333332211    12357789999643


Q ss_pred             CC-CHhHHHhhhCCC
Q 030192          133 AM-NAAEITDKLGLH  146 (181)
Q Consensus       133 ~~-~~~~~~~~~~~~  146 (181)
                      .. ....+....+.+
T Consensus       254 ~~G~~lsi~~~~~~P  268 (428)
T TIGR00959       254 RGGAALSVRSVTGKP  268 (428)
T ss_pred             cccHHHHHHHHHCcC
Confidence            22 233444545443

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.69  E-value=0.0001  Score=54.21  Aligned_cols=124  Identities=17%  Similarity=0.188  Sum_probs=68.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC----c----ccc--------------cCccceeEEEEE--------------EC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE----I----VTT--------------IPTIGFNVETVE--------------YK   59 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~----~----~~~--------------~~~~~~~~~~~~--------------~~   59 (181)
                      +.-+++++|++|+||||++..+...-    .    ...              ....++......              ..
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            34699999999999999988874321    0    000              001222221110              12


Q ss_pred             CEEEEEEEcCCCCCcccc----hhhcc--ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      +..+.++||+|.......    +..++  .+.+-.++|+|++..  .+........+..     -.+-=+++||.|....
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~  226 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS  226 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence            578999999997643221    22222  246678999998632  2333333333311     1234688999998764


Q ss_pred             C-CHhHHHhhhCCC
Q 030192          134 M-NAAEITDKLGLH  146 (181)
Q Consensus       134 ~-~~~~~~~~~~~~  146 (181)
                      . ..-.+....+.+
T Consensus       227 ~G~~l~~~~~~~~P  240 (270)
T PRK06731        227 SGELLKIPAVSSAP  240 (270)
T ss_pred             ccHHHHHHHHHCcC
Confidence            3 222444444443

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.68  E-value=0.00015  Score=56.20  Aligned_cols=123  Identities=18%  Similarity=0.206  Sum_probs=65.6

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCc---------cccc--------------CccceeEEEE----------EECCEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEI---------VTTI--------------PTIGFNVETV----------EYKNISF   63 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~---------~~~~--------------~~~~~~~~~~----------~~~~~~~   63 (181)
                      ..-++++|++||||||++.+|.....         .+..              ...+......          ...+..+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            34688999999999999999863210         0000              0111111111          1136688


Q ss_pred             EEEEcCCCCCccc----chhhccc-----cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192           64 TVWDVGGQDKIRP----LWRHYFQ-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM  134 (181)
Q Consensus        64 ~i~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  134 (181)
                      .++||+|......    .+..+++     ...-.++|+|++..  .....+..... ..    -.+-=+|+||.|....-
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f-~~----~~~~glIlTKLDEt~~~  375 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAY-ES----LNYRRILLTKLDEADFL  375 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHh-cC----CCCCEEEEEcccCCCCc
Confidence            9999999653221    1222222     24468899998653  22333322222 21    12346889999986533


Q ss_pred             -CHhHHHhhhCCC
Q 030192          135 -NAAEITDKLGLH  146 (181)
Q Consensus       135 -~~~~~~~~~~~~  146 (181)
                       ..-.+....+++
T Consensus       376 G~il~i~~~~~lP  388 (432)
T PRK12724        376 GSFLELADTYSKS  388 (432)
T ss_pred             cHHHHHHHHHCCC
Confidence             222444444444

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.67  E-value=7e-05  Score=55.24  Aligned_cols=57  Identities=16%  Similarity=0.290  Sum_probs=37.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc-----ccccCccceeEEE---EEE-CCEEEEEEEcCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVET---VEY-KNISFTVWDVGGQ   71 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-----~~~~~~~~~~~~~---~~~-~~~~~~i~D~~g~   71 (181)
                      .-..++.++|-||+|||||||++.....     ....+..|.+...   +.. ..-.+.+.||||-
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence            4678999999999999999999865332     1223333333211   222 3345889999993

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.66  E-value=4.7e-05  Score=42.80  Aligned_cols=20  Identities=30%  Similarity=0.562  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHhhHh
Q 030192           19 RILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~   38 (181)
                      ..+|.|+.||||||+++.+.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999885

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.66  E-value=0.00097  Score=43.69  Aligned_cols=38  Identities=21%  Similarity=0.184  Sum_probs=28.8

Q ss_pred             hHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192            4 TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      .+..+...+.......+++.|++|+|||++++.+.+.-
T Consensus         6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009           6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            34445455554456789999999999999999998654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.65  E-value=0.0002  Score=56.72  Aligned_cols=23  Identities=30%  Similarity=0.278  Sum_probs=20.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .--++++|++|+||||++..|..
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHH
Confidence            35689999999999999999864

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.64  E-value=4.7e-05  Score=48.96  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHhhHhcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999753

...

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=6.8e-05  Score=56.90  Aligned_cols=97  Identities=21%  Similarity=0.249  Sum_probs=58.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC----c-----c-ccc------------CccceeE-E----------------E
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE----I-----V-TTI------------PTIGFNV-E----------------T   55 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~----~-----~-~~~------------~~~~~~~-~----------------~   55 (181)
                      .+.--|.++|..|+||||.|-.+....    +     + ++.            ...++.+ .                .
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~  178 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR  178 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence            456678999999999999998884311    0     0 000            0011111 0                1


Q ss_pred             EEECCEEEEEEEcCCCCCcccc-------hhhccccccEEEEEEECCCcccHHHHHHHHHHHHc
Q 030192           56 VEYKNISFTVWDVGGQDKIRPL-------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN  112 (181)
Q Consensus        56 ~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  112 (181)
                      +..+++++.|.||.|...-...       ...+ -+.|-+|+|.|++-.+.-.....-+.+.+.
T Consensus       179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~a-i~Pd~vi~VmDasiGQaae~Qa~aFk~~vd  241 (483)
T KOG0780|consen  179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKA-IKPDEIIFVMDASIGQAAEAQARAFKETVD  241 (483)
T ss_pred             HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhh-cCCCeEEEEEeccccHhHHHHHHHHHHhhc
Confidence            2225788999999995432221       1111 259999999999876665555555555543

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.62  E-value=0.00023  Score=59.15  Aligned_cols=124  Identities=18%  Similarity=0.161  Sum_probs=65.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc----------c--ccC------------ccceeEEEE-----------EECCEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV----------T--TIP------------TIGFNVETV-----------EYKNIS   62 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~----------~--~~~------------~~~~~~~~~-----------~~~~~~   62 (181)
                      --++++|++|+||||.+..+......          .  ...            ..++.+...           ...+..
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            46899999999999999988642210          0  000            011111111           113567


Q ss_pred             EEEEEcCCCCCcccc----hhhc--cccccEEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-
Q 030192           63 FTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-  134 (181)
Q Consensus        63 ~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-  134 (181)
                      +.++||+|.......    ....  ....+-.++|+|++.. +.+.++...+......     .+-=+|+||.|....- 
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-----~i~glIlTKLDEt~~~G  340 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-----DVDGCIITKLDEATHLG  340 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-----CCCEEEEeccCCCCCcc
Confidence            999999995432211    1111  2346678899998742 2333333333322110     1235789999986533 


Q ss_pred             CHhHHHhhhCCC
Q 030192          135 NAAEITDKLGLH  146 (181)
Q Consensus       135 ~~~~~~~~~~~~  146 (181)
                      ..-.+....+++
T Consensus       341 ~iL~i~~~~~lP  352 (767)
T PRK14723        341 PALDTVIRHRLP  352 (767)
T ss_pred             HHHHHHHHHCCC
Confidence            222444444443

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.00032  Score=55.16  Aligned_cols=112  Identities=18%  Similarity=0.200  Sum_probs=73.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC------------cccc---cCccceeEEE--E------------------EEC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE------------IVTT---IPTIGFNVET--V------------------EYK   59 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~~~---~~~~~~~~~~--~------------------~~~   59 (181)
                      .+..++.++.+...|||||-..|....            |...   ....+++..+  +                  +..
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            455688999999999999999996532            1111   1111222211  1                  113


Q ss_pred             CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      +.-++++|.||+-+|.......++-.|+.++|+|.-+.--. .....+.+.+.+    .+.-++++||.|-+
T Consensus        97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV-QTETVLrQA~~E----RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAIAE----RIKPVLVMNKMDRA  163 (842)
T ss_pred             ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe-chHHHHHHHHHh----hccceEEeehhhHH
Confidence            56789999999999999999999999999999998542111 112223333333    33347889999953

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.56  E-value=0.00078  Score=52.12  Aligned_cols=124  Identities=19%  Similarity=0.255  Sum_probs=68.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC---------C-c--cc--cc------------CccceeEEEEE-----------E
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG---------E-I--VT--TI------------PTIGFNVETVE-----------Y   58 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~---------~-~--~~--~~------------~~~~~~~~~~~-----------~   58 (181)
                      ....|+++|++|+||||.+..+...         . .  .+  ..            ...++.+....           .
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            3468999999999999999888431         1 0  00  00            01122111111           1


Q ss_pred             CCEEEEEEEcCCCCCccc----chhhcccc---ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           59 KNISFTVWDVGGQDKIRP----LWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      .++.+.++||+|......    ....++..   ..-.++|+|++..  ...+.+.+.....     -.+-=+++||.|..
T Consensus       253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet  325 (388)
T PRK12723        253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDET  325 (388)
T ss_pred             CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCC
Confidence            467899999999754331    12222232   2368899999754  3344444443321     12346889999986


Q ss_pred             CCC-CHhHHHhhhCCC
Q 030192          132 NAM-NAAEITDKLGLH  146 (181)
Q Consensus       132 ~~~-~~~~~~~~~~~~  146 (181)
                      ..- ..-.+....+++
T Consensus       326 ~~~G~~l~~~~~~~~P  341 (388)
T PRK12723        326 TCVGNLISLIYEMRKE  341 (388)
T ss_pred             CcchHHHHHHHHHCCC
Confidence            543 222444444443

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.55  E-value=6.6e-05  Score=49.71  Aligned_cols=20  Identities=30%  Similarity=0.539  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChHHHHhhHhc
Q 030192           20 ILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~   39 (181)
                      |+++|+|||||||+++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999973

...

>PRK07261 topology modulation protein; Provisional

Probab=97.54  E-value=7.3e-05  Score=51.34  Aligned_cols=22  Identities=36%  Similarity=0.658  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+|+|+|++|||||||...+..
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.53  E-value=0.00044  Score=43.20  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=48.0

Q ss_pred             EEEEc-CCCCChHHHHhhHhcCCcccccCccceeEEEEEE-CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192           20 ILMVG-LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   97 (181)
Q Consensus        20 i~i~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (181)
                      |.+.| ..|+||||+...+...-...     +.....++. ..+.+.++|+|+.....  ....+..+|.++++.+.+ .
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~   73 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARR-----GKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-P   73 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhC-----CCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-H
Confidence            56677 47999999987774322111     111111111 11678999999875433  235667899999999886 3


Q ss_pred             ccHHHHHHHH
Q 030192           98 DRVVEARDEL  107 (181)
Q Consensus        98 ~s~~~~~~~~  107 (181)
                      .++....+.+
T Consensus        74 ~s~~~~~~~~   83 (104)
T cd02042          74 LDLDGLEKLL   83 (104)
T ss_pred             HHHHHHHHHH
Confidence            4444444443

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.51  E-value=0.00033  Score=54.13  Aligned_cols=110  Identities=25%  Similarity=0.221  Sum_probs=64.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC------Cc-----ccccC-----------ccceeEEEEE---------------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG------EI-----VTTIP-----------TIGFNVETVE---------------   57 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~------~~-----~~~~~-----------~~~~~~~~~~---------------   57 (181)
                      +....|+++|-.||||||.+-.|...      +.     ..+.|           ..+..++...               
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~  177 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK  177 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence            45678999999999999998877431      10     01111           1122222111               


Q ss_pred             --ECCEEEEEEEcCCCCCcccch------hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030192           58 --YKNISFTVWDVGGQDKIRPLW------RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD  129 (181)
Q Consensus        58 --~~~~~~~i~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D  129 (181)
                        ...+.+.|+||+|....+...      ..-.-+.|-+++|+|+.-.+...+....+.+.+.-       -=+|+||.|
T Consensus       178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKlD  250 (451)
T COG0541         178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKLD  250 (451)
T ss_pred             HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEccc
Confidence              134689999999965443321      11123699999999998665544554545444332       246677777


Q ss_pred             CC
Q 030192          130 LP  131 (181)
Q Consensus       130 l~  131 (181)
                      ..
T Consensus       251 Gd  252 (451)
T COG0541         251 GD  252 (451)
T ss_pred             CC
Confidence            54

>PRK08118 topology modulation protein; Reviewed

Probab=97.50  E-value=8.8e-05  Score=50.74  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+|+|+|++|||||||...+...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998643

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.50  E-value=8.9e-05  Score=51.20  Aligned_cols=23  Identities=48%  Similarity=0.648  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ++|+|+|+|||||||+...+...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999866

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.45  E-value=0.00019  Score=51.07  Aligned_cols=69  Identities=17%  Similarity=0.230  Sum_probs=37.3

Q ss_pred             CEEEEEEEcCCCCCcccc------hhhccccccEEEE---EEEC---CCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEe
Q 030192           60 NISFTVWDVGGQDKIRPL------WRHYFQNTQGLIF---VVDS---NDRDRVVEAR-DELHRMLNEDELRDAVLLVFAN  126 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~------~~~~~~~~d~~i~---v~d~---~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~n  126 (181)
                      .-...++|.|||-+.-..      ....+++-+.=+.   ++|+   ++|..+-... -.+..++.    ...|-|=|+.
T Consensus        96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVNvlS  171 (290)
T KOG1533|consen   96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVNVLS  171 (290)
T ss_pred             cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchhhhh
Confidence            346789999997543221      1222334444444   4444   3454443222 22223333    4677888999


Q ss_pred             CCCCCC
Q 030192          127 KQDLPN  132 (181)
Q Consensus       127 K~Dl~~  132 (181)
                      |+|+..
T Consensus       172 K~Dl~~  177 (290)
T KOG1533|consen  172 KADLLK  177 (290)
T ss_pred             HhHHHH
Confidence            999864

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.43  E-value=0.00017  Score=50.78  Aligned_cols=28  Identities=29%  Similarity=0.351  Sum_probs=23.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI   42 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~   42 (181)
                      .+.-.++++||+|||||||++.+-+-+.
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence            4556789999999999999999976543

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.43  E-value=0.00094  Score=42.03  Aligned_cols=101  Identities=13%  Similarity=0.139  Sum_probs=53.2

Q ss_pred             EEEc-CCCCChHHHHhhHhcCCccc-ccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc
Q 030192           21 LMVG-LDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   98 (181)
Q Consensus        21 ~i~G-~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (181)
                      .++| ..|+||||+...+...-... ...+.-... ..+ ....+.++|+|+.....  ....+..+|.++++.+.+ ..
T Consensus         3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~-d~~-~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~   77 (106)
T cd03111           3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDL-DLQ-FGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LP   77 (106)
T ss_pred             EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEEC-CCC-CCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hH
Confidence            4444 48899999877774221111 000000000 000 01178999999865433  344667899999999876 33


Q ss_pred             cHHHHHHHHHHHHcCCCCC-CCeEEEEEeC
Q 030192           99 RVVEARDELHRMLNEDELR-DAVLLVFANK  127 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~-~~piivv~nK  127 (181)
                      ++.........+... ... ...+.+|+|+
T Consensus        78 s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKRLLELLRVL-DYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence            444444444333222 112 3456677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.41  E-value=0.00015  Score=41.98  Aligned_cols=21  Identities=33%  Similarity=0.417  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHhhHhcC
Q 030192           20 ILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~   40 (181)
                      |.+.|++|+|||++.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999999754

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.38  E-value=0.00016  Score=47.48  Aligned_cols=28  Identities=29%  Similarity=0.249  Sum_probs=23.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI   42 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~   42 (181)
                      ...-.++|+|+.|+|||||++.+.+...
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             cCCCEEEEEccCCCccccceeeeccccc
Confidence            3455789999999999999999987654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.38  E-value=0.00019  Score=49.27  Aligned_cols=53  Identities=19%  Similarity=0.154  Sum_probs=33.2

Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHH--HcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPNAMNAAEITDKL  143 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~  143 (181)
                      |++++|+|+..+.+-.  ...+...  +..   .++|+++|+||+|+.++....++...+
T Consensus         1 DvVl~VvDar~p~~~~--~~~i~~~~~l~~---~~kp~IlVlNK~DL~~~~~l~~~~~~~   55 (172)
T cd04178           1 DVILEVLDARDPLGCR--CPQVEEAVLQAG---GNKKLVLVLNKIDLVPKENVEKWLKYL   55 (172)
T ss_pred             CEEEEEEECCCCCCCC--CHHHHHHHHhcc---CCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence            7899999997753321  1222222  222   468999999999998755444444443

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.38  E-value=0.00085  Score=44.40  Aligned_cols=104  Identities=15%  Similarity=0.202  Sum_probs=56.8

Q ss_pred             EEcCCCCChHHHHhhHhcCCcccccCccceeEE-EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccH
Q 030192           22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV  100 (181)
Q Consensus        22 i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~  100 (181)
                      .-|..|+|||++--.+...-......+.-.+.. ....-.+++.++|+|+...  ......+..+|.++++.+.+ ..++
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~   81 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSI   81 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHH
Confidence            446799999998666532111000000000000 0000127789999997543  22345678899999999986 3344


Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192          101 VEARDELHRMLNEDELRDAVLLVFANKQDL  130 (181)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  130 (181)
                      ......+..+....  ...++.+++|+.+.
T Consensus        82 ~~~~~~l~~l~~~~--~~~~~~lVvN~~~~  109 (139)
T cd02038          82 TDAYALIKKLAKQL--RVLNFRVVVNRAES  109 (139)
T ss_pred             HHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence            33333333332221  34567899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.38  E-value=0.00013  Score=49.36  Aligned_cols=50  Identities=32%  Similarity=0.462  Sum_probs=30.9

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI   74 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (181)
                      .+.++|.+|+|||||++++...-     ...+.....+......+.+ |++|.+.+
T Consensus         3 vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~Ds~   52 (159)
T cd03116           3 VIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKDSY   52 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccchHH
Confidence            58899999999999999998532     1223333334443333333 66665433

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.33  E-value=0.00017  Score=51.33  Aligned_cols=27  Identities=26%  Similarity=0.284  Sum_probs=22.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ++.=-++|+|++|||||||+|-+.+-.
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            455578999999999999999997544

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.32  E-value=0.00024  Score=48.69  Aligned_cols=25  Identities=28%  Similarity=0.264  Sum_probs=21.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ...-+.|+|++|||||||++++...
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHH
Confidence            3457899999999999999999854

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.32  E-value=0.00014  Score=49.43  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCChHHHHhhHhcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            6999999999999999999754

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.31  E-value=0.00029  Score=52.33  Aligned_cols=31  Identities=29%  Similarity=0.202  Sum_probs=23.8

Q ss_pred             HHHhhhcccccEEEEEcCCCCChHHHHhhHh
Q 030192            8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus         8 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      ++.....+..+-|+|.|++||||||+++.+.
T Consensus        53 f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~   83 (290)
T TIGR00554        53 FLGTNGAKIPYIISIAGSVAVGKSTTARILQ   83 (290)
T ss_pred             HHhcccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3333334567899999999999999998763

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR00235 udk uridine kinase

Probab=97.30  E-value=0.00021  Score=50.59  Aligned_cols=26  Identities=31%  Similarity=0.266  Sum_probs=22.6

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhc
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +++..-|+|+|++|||||||++.+.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence            35667899999999999999999965

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.29  E-value=0.0002  Score=51.40  Aligned_cols=26  Identities=27%  Similarity=0.298  Sum_probs=21.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +.=-|.++|++|||||||+|-+.+-.
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44468999999999999999997643

>PRK01889 GTPase RsgA; Reviewed

Probab=97.29  E-value=0.00037  Score=53.45  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=22.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      .-+++++|.+|+|||||+|.+.+..
T Consensus       195 g~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        195 GKTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhc
Confidence            3589999999999999999998754

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.29  E-value=0.00022  Score=47.12  Aligned_cols=21  Identities=33%  Similarity=0.517  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHhhHhcC
Q 030192           20 ILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~   40 (181)
                      |+++|++|||||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999865

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.27  E-value=0.00022  Score=49.21  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=17.4

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhc
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .....-.+++.|++|+|||+|++++..
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            445667899999999999999998854

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.25  E-value=0.00027  Score=50.06  Aligned_cols=26  Identities=31%  Similarity=0.316  Sum_probs=23.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+...|+|.|++|||||||.+.+...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            56789999999999999999999653

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.25  E-value=0.00032  Score=45.63  Aligned_cols=27  Identities=33%  Similarity=0.249  Sum_probs=22.6

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV   43 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~   43 (181)
                      .-.++++|++|+|||+++..+...-..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence            357899999999999999999865543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.25  E-value=0.00026  Score=46.98  Aligned_cols=22  Identities=36%  Similarity=0.456  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .|.++|+.|||||||++.+.+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.24  E-value=0.00027  Score=45.69  Aligned_cols=21  Identities=38%  Similarity=0.444  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHhhHhcC
Q 030192           20 ILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~   40 (181)
                      |+|.|.+||||||+.+.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999754

...

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.23  E-value=0.00053  Score=51.32  Aligned_cols=125  Identities=21%  Similarity=0.234  Sum_probs=72.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC----cc------ccc------------CccceeEEEE-E--------------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE----IV------TTI------------PTIGFNVETV-E--------------   57 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~----~~------~~~------------~~~~~~~~~~-~--------------   57 (181)
                      .+..-|+++|-.|+||||-|-.+...-    ..      .+.            ...+..+... .              
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            457889999999999999988884311    00      000            0111211110 0              


Q ss_pred             --ECCEEEEEEEcCCCCCcccc-------hhhcc-----ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEE
Q 030192           58 --YKNISFTVWDVGGQDKIRPL-------WRHYF-----QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV  123 (181)
Q Consensus        58 --~~~~~~~i~D~~g~~~~~~~-------~~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiv  123 (181)
                        -.++.+.++||+|......-       .....     ...|-+++++|++..+.--+....+.+...-       -=+
T Consensus       217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~Gi  289 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DGI  289 (340)
T ss_pred             HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ceE
Confidence              14688999999995432211       11112     2345588999998654444444455555442       358


Q ss_pred             EEeCCCCCCC-CCHhHHHhhhCCC
Q 030192          124 FANKQDLPNA-MNAAEITDKLGLH  146 (181)
Q Consensus       124 v~nK~Dl~~~-~~~~~~~~~~~~~  146 (181)
                      ++||.|.... =..-.+.+.++.+
T Consensus       290 IlTKlDgtAKGG~il~I~~~l~~P  313 (340)
T COG0552         290 ILTKLDGTAKGGIILSIAYELGIP  313 (340)
T ss_pred             EEEecccCCCcceeeeHHHHhCCC
Confidence            8999995432 1344666666665

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.21  E-value=0.0003  Score=45.69  Aligned_cols=21  Identities=38%  Similarity=0.409  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHhhHhcC
Q 030192           20 ILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~   40 (181)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999754

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.21  E-value=0.00065  Score=47.29  Aligned_cols=27  Identities=33%  Similarity=0.322  Sum_probs=23.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +..-.++++|++||||||+++.+.+.-
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            345789999999999999999998643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.21  E-value=0.00031  Score=48.83  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      -.++++|++|||||||++.+.+.
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            36899999999999999999654

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.21  E-value=0.00049  Score=52.40  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=23.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +...+|++.|++|||||||++.+.+.-
T Consensus       160 ~~~~nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        160 VGRLTMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             HcCCeEEEECCCCccHHHHHHHHHccc
Confidence            467899999999999999999998653

>PRK03839 putative kinase; Provisional

Probab=97.20  E-value=0.00032  Score=48.50  Aligned_cols=22  Identities=32%  Similarity=0.296  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHhhHhcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      +|+++|.|||||||+...+...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999643

>PRK06217 hypothetical protein; Validated

Probab=97.20  E-value=0.00031  Score=48.75  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+|+|+|.+||||||+..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999643

>PRK14530 adenylate kinase; Provisional

Probab=97.20  E-value=0.00035  Score=49.78  Aligned_cols=23  Identities=39%  Similarity=0.452  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..+|+|+|+|||||||+.+.|..
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999953

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.19  E-value=0.00028  Score=49.52  Aligned_cols=21  Identities=29%  Similarity=0.297  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHhhHhcC
Q 030192           20 ILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~   40 (181)
                      |++.|++|||||||++.+.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK08233 hypothetical protein; Provisional

Probab=97.18  E-value=0.00038  Score=48.00  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+-|+|.|.+|||||||.+++...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            467899999999999999999753

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.18  E-value=0.00038  Score=50.20  Aligned_cols=27  Identities=30%  Similarity=0.489  Sum_probs=23.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ...++++|+|++|||||+|+-.++...
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            567899999999999999999887543

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.17  E-value=0.00031  Score=48.43  Aligned_cols=22  Identities=36%  Similarity=0.425  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHhhHhcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .++|+|++||||||+++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.15  E-value=0.00039  Score=43.71  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHh
Q 030192           16 KEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      ..-.++++|++|+|||||++.+.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            34568999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.14  E-value=0.00035  Score=49.16  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHhhHhcCC
Q 030192           20 ILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      |+++|++||||||+++.+....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999886543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.14  E-value=0.00035  Score=46.29  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=22.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +...+|++.|.||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            5678999999999999999999963

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.13  E-value=0.0083  Score=48.34  Aligned_cols=22  Identities=32%  Similarity=0.394  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      -+++.||+|+||||.++.+...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5677999999999999999654

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.13  E-value=0.00043  Score=47.99  Aligned_cols=22  Identities=32%  Similarity=0.268  Sum_probs=19.7

Q ss_pred             ccEEEEEcCCCCChHHHHhhHh
Q 030192           17 EMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      ...|+++|++||||||+++.+.
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999997

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK05439 pantothenate kinase; Provisional

Probab=97.13  E-value=0.00053  Score=51.42  Aligned_cols=32  Identities=25%  Similarity=0.185  Sum_probs=25.1

Q ss_pred             HHHhhhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192            8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus         8 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++........+-|+|.|++||||||+.+.+..
T Consensus        77 fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~  108 (311)
T PRK05439         77 FLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA  108 (311)
T ss_pred             HhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            33333446778999999999999999998854

>PRK06547 hypothetical protein; Provisional

Probab=97.13  E-value=0.0008  Score=46.23  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=25.6

Q ss_pred             HhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..+.......|+|.|++||||||+.+.+...
T Consensus         8 ~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547          8 ARLCGGGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             HHhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3455677888999999999999999999653

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.12  E-value=0.00046  Score=48.87  Aligned_cols=26  Identities=19%  Similarity=0.442  Sum_probs=22.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+..-|+|+|++|||||||++.|...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            35567889999999999999999754

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.11  E-value=0.00046  Score=45.51  Aligned_cols=21  Identities=38%  Similarity=0.561  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .|+++|++|+|||++++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999998864

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.10  E-value=0.00042  Score=47.78  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      -|+++|++||||||+++.+...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            5899999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14532 adenylate kinase; Provisional

Probab=97.10  E-value=0.00046  Score=48.01  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++|+++|+|||||||+..++..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999964

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.09  E-value=0.00038  Score=49.78  Aligned_cols=20  Identities=35%  Similarity=0.320  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChHHHHhhHhc
Q 030192           20 ILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~   39 (181)
                      |++.|++|||||||++.+.+
T Consensus         2 igI~G~sGSGKTTla~~L~~   21 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQA   21 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHH
Confidence            68999999999999999864

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK14531 adenylate kinase; Provisional

Probab=97.09  E-value=0.00049  Score=47.74  Aligned_cols=22  Identities=36%  Similarity=0.440  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+|+++|+|||||||+...+..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.09  E-value=0.00037  Score=49.04  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.2

Q ss_pred             cEEEEEcCCCCChHHHHhhHh
Q 030192           18 MRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~   38 (181)
                      --.+++||+|||||||++.+-
T Consensus        34 ~VTAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          34 KVTALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             ceEEEECCCCcCHHHHHHHHH
Confidence            345899999999999999883

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.08  E-value=0.00088  Score=48.20  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=23.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+..-|++.|++|||||||++.+.+.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~   56 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEAL   56 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            56789999999999999999998754

>PHA00729 NTP-binding motif containing protein

Probab=97.07  E-value=0.00099  Score=47.58  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=26.4

Q ss_pred             HHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192            7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus         7 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      +..+.+....-.+|++.|+||+|||+|..++...
T Consensus         7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729          7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            3445555556679999999999999999998653

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.07  E-value=0.00047  Score=49.18  Aligned_cols=24  Identities=29%  Similarity=0.439  Sum_probs=21.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..=-|+++|++|+|||||++.+-+
T Consensus        29 ~GE~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          29 QGEMVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhc
Confidence            445789999999999999999976

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.05  E-value=0.00047  Score=52.35  Aligned_cols=27  Identities=22%  Similarity=0.175  Sum_probs=23.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +...+|+|+|++|||||||++.+...-
T Consensus       158 ~~~~nili~G~tgSGKTTll~aL~~~i  184 (332)
T PRK13900        158 ISKKNIIISGGTSTGKTTFTNAALREI  184 (332)
T ss_pred             HcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence            456899999999999999999998543

>PRK00625 shikimate kinase; Provisional

Probab=97.04  E-value=0.00059  Score=46.94  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++|.++|.+||||||+.+.+..
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998854

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.03  E-value=0.00066  Score=47.86  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=21.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ....|+++|++|||||||++.+.+.
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4567999999999999999999765

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.03  E-value=0.00056  Score=47.22  Aligned_cols=28  Identities=36%  Similarity=0.284  Sum_probs=23.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI   42 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~   42 (181)
                      +..-.++++|+.|+|||||++.+.+-..
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            4556889999999999999999987653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.03  E-value=0.00055  Score=51.65  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=22.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ...+|+|.|++||||||+++.+...
T Consensus       143 ~~~nilI~G~tGSGKTTll~aL~~~  167 (323)
T PRK13833        143 SRLNIVISGGTGSGKTTLANAVIAE  167 (323)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999864

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.02  E-value=0.00054  Score=49.84  Aligned_cols=25  Identities=28%  Similarity=0.264  Sum_probs=21.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+.--++++||.|||||||++.+.+
T Consensus        26 ~~G~i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          26 PKGEITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3445679999999999999999976

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=97.01  E-value=0.0069  Score=44.90  Aligned_cols=118  Identities=19%  Similarity=0.279  Sum_probs=66.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-----------ccc---------C------------ccceeEEEEEE-----
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-----------TTI---------P------------TIGFNVETVEY-----   58 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-----------~~~---------~------------~~~~~~~~~~~-----   58 (181)
                      +..--.+.|-=|+|||||+|.++.+...           +..         .            ..|+-..++..     
T Consensus        56 rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gvra  135 (391)
T KOG2743|consen   56 RIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGVRA  135 (391)
T ss_pred             ccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHHHH
Confidence            3344577899999999999999754311           100         0            12222333322     


Q ss_pred             --------CCEEEEEEEcCCCCCcccchhhcc--------ccccEEEEEEECCC---------cccHHHHHHHHHHHHcC
Q 030192           59 --------KNISFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSND---------RDRVVEARDELHRMLNE  113 (181)
Q Consensus        59 --------~~~~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~---------~~s~~~~~~~~~~~~~~  113 (181)
                              ......+++|.|-..-..+...++        -.-|+++-|+|+-.         ++++-+  +...++ ..
T Consensus       136 ie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~--EA~~Qi-A~  212 (391)
T KOG2743|consen  136 IENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLIN--EATRQI-AL  212 (391)
T ss_pred             HHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchH--HHHHHH-hh
Confidence                    345677889999654333322222        25899999999731         222211  111111 11


Q ss_pred             CCCCCCeEEEEEeCCCCCCCCCHhHHHhh
Q 030192          114 DELRDAVLLVFANKQDLPNAMNAAEITDK  142 (181)
Q Consensus       114 ~~~~~~piivv~nK~Dl~~~~~~~~~~~~  142 (181)
                      .      =-+++||.|+...+.+..+.+.
T Consensus       213 A------D~II~NKtDli~~e~~~~l~q~  235 (391)
T KOG2743|consen  213 A------DRIIMNKTDLVSEEEVKKLRQR  235 (391)
T ss_pred             h------heeeeccccccCHHHHHHHHHH
Confidence            1      2578899999987655555543

>PRK13949 shikimate kinase; Provisional

Probab=97.01  E-value=0.0006  Score=46.71  Aligned_cols=21  Identities=48%  Similarity=0.564  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +|+++|++||||||+.+.+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998854

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.01  E-value=0.00062  Score=48.52  Aligned_cols=27  Identities=30%  Similarity=0.329  Sum_probs=23.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ...-.++++|+.|+|||||++.+.+..
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            345578999999999999999998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.00  E-value=0.00061  Score=47.46  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-|+++|++|||||||+++|....
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcC
Confidence            4568999999999999999997653

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.00  E-value=0.00057  Score=47.28  Aligned_cols=20  Identities=25%  Similarity=0.313  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChHHHHhhHhc
Q 030192           20 ILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~   39 (181)
                      |+++|+|||||||+..++..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.99  E-value=0.00057  Score=51.68  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=21.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..=-++++||+|||||||++.+.+-.
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33458999999999999999997643

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=96.99  E-value=0.001  Score=47.45  Aligned_cols=36  Identities=28%  Similarity=0.274  Sum_probs=25.5

Q ss_pred             HHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192            6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus         6 ~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..+.+-+.....-.+++.|+.|+|||||++.+....
T Consensus         9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~   44 (234)
T PF01637_consen    9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL   44 (234)
T ss_dssp             HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence            334444444456788999999999999999997643

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		1e-104
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		4e-91
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		2e-90
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		1e-88
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		5e-86
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		1e-85
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		8e-85
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-84
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		7e-84
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		2e-82
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		3e-82
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		4e-80
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		1e-79
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		9e-77
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		4e-74
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		4e-74
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		3e-73
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		4e-73
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-70
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		3e-70
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		4e-70
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		5e-70
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		8e-68
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		1e-57
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		3e-55
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		2e-54
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		2e-50
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		4e-48
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		5e-48
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		5e-48
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		5e-47
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		6e-45
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		8e-45
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		1e-44
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		1e-44
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-44
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		8e-43
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		6e-40
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		5e-39
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		5e-39
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-38
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		3e-37
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		2e-35
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-28
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-27
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		6e-27
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-26
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		3e-24
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		5e-24
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		3e-20
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		3e-20
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		4e-20
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		6e-20
1svk_A	353	Structure Of The K180p Mutant Of Gi Alpha Subunit B		7e-09
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-08
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-08
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-08
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		8e-08
3onw_A	328	Structure Of A G-Alpha-I1 Mutant With Enhanced Affi		8e-08
3d7m_A	354	Crystal Structure Of The G Protein Fast-Exchange Do		8e-08
3ffb_A	360	Crystal Structure Of A Fast Activating G Protein Mu		8e-08
2xns_A	327	Crystal Structure Of Human G Alpha I1 Bound To A De		8e-08
1kjy_A	325	Crystal Structure Of Human G[alpha]i1 Bound To The		8e-08
2gtp_A	323	Crystal Structure Of The Heterodimeric Complex Of H		9e-08
3qi2_A	328	A Galpha P-Loop Mutation Prevents Transition To The		9e-08
2ik8_A	324	Crystal Structure Of The Heterodimeric Complex Of H		9e-08
1y3a_A	329	Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe		9e-08
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		9e-08
4g5q_A	330	Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330		9e-08
3qe0_A	325	A Galpha-I1 P-Loop Mutation Prevents Transition To		9e-08
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		9e-08
1as0_A	353	Gtp-Gamma-S Bound G42v Gia1 Length = 353		9e-08
1gp2_A	353	G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi		9e-08
2g83_A	313	Structure Of Activated G-alpha-i1 Bound To A Nucleo		9e-08
2zjy_A	356	Structure Of The K349p Mutant Of Gi Alpha 1 Subunit		9e-08
1bh2_A	315	A326s Mutant Of An Inhibitory Alpha Subunit Length		1e-07
1fqj_A	325	Crystal Structure Of The Heterotrimeric Complex Of		1e-07
4g5r_A	330	Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330		1e-07
4g5o_A	330	Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length		1e-07
2ihb_A	323	Crystal Structure Of The Heterodimeric Complex Of H		1e-07
2ode_A	350	Crystal Structure Of The Heterodimeric Complex Of H		2e-07
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-07
3v00_C	356	Studies Of A Constitutively Active G-Alpha Subunit		2e-07
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-07
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-07
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-07
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-07
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-07
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		3e-07
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-07
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		3e-07
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		3e-07
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		3e-07
3ums_A	354	Crystal Structure Of The G202a Mutant Of Human G-Al		4e-07
1gg2_A	353	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-07
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		4e-07
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		5e-07
3umr_A	354	Crystal Structure Of The G202d Mutant Of Human G-Al		6e-07
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		6e-07
1gil_A	353	Structure Of Active Conformations Of Gia1 And The M		8e-07
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		9e-07
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		1e-06
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-06
3c7k_A	333	Molecular Architecture Of Galphao And The Structura		1e-06
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-06
1got_A	350	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-06
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-06
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-06
1shz_A	340	Crystal Structure Of The P115rhogef Rgrgs Domain In		3e-06
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-06
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		4e-06
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		6e-06
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		6e-06
4fmc_F	117	Espg-Rab1 Complex Length = 117		7e-06
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		8e-06
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		9e-06
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-05
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-05
1tnd_A	324	The 2.2 Angstroms Crystal Structure Of Transducin-A		2e-05
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-05
2bcj_Q	353	Crystal Structure Of G Protein-coupled Receptor Kin		2e-05
3ah8_A	355	Structure Of Heterotrimeric G Protein Galpha-Q Beta		2e-05
3ohm_A	327	Crystal Structure Of Activated G Alpha Q Bound To I		2e-05
4ekc_A	347	Structure Of Human Regulator Of G Protein Signaling		2e-05
4gnk_A	353	Crystal Structure Of Galphaq In Complex With Full-l		2e-05
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-05
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-05
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-05
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-05
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		3e-05
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		3e-05
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-05
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-05
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		4e-05
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		4e-05
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		4e-05
1zcb_A	362	Crystal Structure Of G Alpha 13 In Complex With Gdp		4e-05
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		4e-05
3cx7_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		5e-05
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		5e-05
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		5e-05
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		5e-05
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		9e-05
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		1e-04
1byu_A	216	Canine Gdp-Ran Length = 216		1e-04
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-04
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-04
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-04
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-04
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-04
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-04
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-04
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-04
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-04
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-04
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		2e-04
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-04
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-04
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		3e-04
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		3e-04
2fh5_B	214	The Structure Of The Mammalian Srp Receptor Length		4e-04
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		4e-04
3cx6_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		4e-04
3sn6_A	380	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-04
1cul_C	380	Complex Of Gs-Alpha With The Catalytic Domains Of M		5e-04
1cjk_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		5e-04
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		5e-04
1azs_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		5e-04
1cs4_C	394	Complex Of Gs-Alpha With The Catalytic Domains Of M		5e-04
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		9e-04
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		9e-04
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		9e-04

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score =  372 bits (954), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/181 (98%), Positives = 180/181 (99%)
Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 4   MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 63
Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 64  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 123
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK
Sbjct: 124 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 183
Query: 181 A 181
           A
Sbjct: 184 A 184

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score =  330 bits (845), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 159/180 (88%), Positives = 167/180 (92%)
Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score =  327 bits (839), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 158/179 (88%), Positives = 166/179 (92%)
Query: 2   GLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
           G  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 1   GNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 60
Query: 62  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL 121
           SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVL
Sbjct: 61  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 120
Query: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct: 121 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 179

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score =  321 bits (823), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/169 (91%), Positives = 162/169 (95%)
Query: 12  LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 71
           LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 219
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           DKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLP
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           NAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct: 280 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score =  312 bits (800), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 146/180 (81%), Positives = 161/180 (89%)
Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGLT + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           I FTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDR+R+ E  DEL +ML  DELRDAV
Sbjct: 61  ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score =  311 bits (798), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 149/163 (91%), Positives = 157/163 (96%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
           MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78  WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
           WRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAA
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           EITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score =  308 bits (790), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 148/163 (90%), Positives = 156/163 (95%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
           MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG DKIRPL
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPL 62
Query: 78  WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
           WRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAA
Sbjct: 63  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 122
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           EITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct: 123 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 165

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score =  307 bits (787), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 141/181 (77%), Positives = 165/181 (91%)
Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL  +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKN
Sbjct: 1   MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKN 60
Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQD+IR LWRHY++NT+G+IFV+DSNDR R+ EAR+ + RMLNEDELR+AV
Sbjct: 61  ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
            LVFANKQDLP AM+AAEIT+KLGLHS+R R W+IQSTCATSGEGLYEGL+WLSNN+ ++
Sbjct: 121 WLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQ 180
Query: 181 A 181
           +
Sbjct: 181 S 181

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score =  305 bits (782), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 142/173 (82%), Positives = 157/173 (90%)
Query: 8   LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWD 67
           LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWD
Sbjct: 20  LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWD 79
Query: 68  VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127
           VGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ DEL +ML EDELRDAVLLVFANK
Sbjct: 80  VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 139
Query: 128 QDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           QD+PNAM  +E+TDKLGL  LR R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct: 140 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score =  301 bits (770), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 135/177 (76%), Positives = 167/177 (94%)
Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL  ++LF+RLF KK++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++N
Sbjct: 1   MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRN 60
Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHY+ NT GLIFVVDSNDR+R+ +AR+ELHRM+NE+EL+DA+
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAI 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           +LVFANKQDLPNAM+AAE+T+KL L+++R+R+W+IQSTCAT G+GLYEG DWL+ ++
Sbjct: 121 ILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHL 177

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score =  300 bits (768), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 138/176 (78%), Positives = 160/176 (90%)
Query: 2   GLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
           GL  +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNI
Sbjct: 2   GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNI 61
Query: 62  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL 121
           SFTVWDVGGQD+IR LWRHY++NT+G+IFVVDSNDR R+ EAR+ + RMLNEDELR+A  
Sbjct: 62  SFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAW 121
Query: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           LVFANKQDLP AM+AAEIT+KLGLHS+R R W+IQ+TCATSGEGLYEGL+WLSN++
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSL 177

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score =  293 bits (749), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 132/169 (78%), Positives = 156/169 (92%)
Query: 9   FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
            S+L  KKEMRILMVGLDAAGKT+ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV
Sbjct: 9   LSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
Query: 69  GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
           GGQDKIRPLWRHY+QNTQ +IFVVDSNDRDR+ EAR+EL +MLNEDE+R+A+LLVFANK 
Sbjct: 69  GGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKH 128
Query: 129 DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           DLP AM+ +E+T+KLGL +++ R WY Q++CAT+G+GLYEGLDWL++N+
Sbjct: 129 DLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNL 177

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score =  291 bits (745), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 135/174 (77%), Positives = 154/174 (88%)
Query: 2   GLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
           GL  +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVE V+Y NI
Sbjct: 2   GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNI 61
Query: 62  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL 121
           SFTVWDVGGQD+IR LWRHY+ NT+G+IFVVDSNDR R+ EAR+ + RMLNEDEL +A  
Sbjct: 62  SFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAW 121
Query: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175
           LVFANKQDLP AM+AAEIT+KLGLHS+R R W+IQ+TCATSGEGLYEGL+WLSN
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSN 175

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score =  282 bits (721), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 128/160 (80%), Positives = 149/160 (93%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
           MRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+IR L
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSL 60
Query: 78  WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
           WRHY++NT+G+IFVVDSNDR R+ EAR+ + RMLNEDELR+A  LVFANKQDLP AM+AA
Sbjct: 61  WRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAA 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           EIT+KLGLHS+R R W+IQ+TCATSGEGLYEGL+WLSN++
Sbjct: 121 EITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSL 160

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score =  273 bits (698), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 123/173 (71%), Positives = 148/173 (85%)
Query: 7   KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
           K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VW
Sbjct: 3   KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 62
Query: 67  DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
           DVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FAN
Sbjct: 63  DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
           KQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N  S
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score =  273 bits (697), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 123/173 (71%), Positives = 148/173 (85%)
Query: 7   KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
           K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VW
Sbjct: 2   KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61
Query: 67  DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
           DVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FAN
Sbjct: 62  DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Query: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
           KQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N  S
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 174

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score =  270 bits (690), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 122/173 (70%), Positives = 147/173 (84%)
Query: 7   KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
           K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VW
Sbjct: 3   KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 62
Query: 67  DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
           DVGG DKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FAN
Sbjct: 63  DVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
           KQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N  S
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score =  270 bits (689), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 121/168 (72%), Positives = 144/168 (85%)
Query: 13  FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
            + KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQD
Sbjct: 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQD 377
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           KIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N  SK
Sbjct: 438 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score =  261 bits (666), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 118/162 (72%), Positives = 140/162 (86%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
           MRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPL
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 78  WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
           WRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   
Sbjct: 61  WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
           EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N  S
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 162

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score =  260 bits (664), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 118/163 (72%), Positives = 140/163 (85%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76
           EMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGG DKIRP
Sbjct: 3   EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 62
Query: 77  LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136
           LWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM  
Sbjct: 63  LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 122
Query: 137 AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
            EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N  S
Sbjct: 123 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 165

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score =  259 bits (663), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 118/163 (72%), Positives = 140/163 (85%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76
           EMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGG DKIRP
Sbjct: 2   EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 61
Query: 77  LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136
           LWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM  
Sbjct: 62  LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 121
Query: 137 AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
            EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N  S
Sbjct: 122 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 164

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score =  259 bits (663), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 117/159 (73%), Positives = 139/159 (87%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
           MRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPL
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 78  WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
           WRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   
Sbjct: 61  WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
           EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score =  252 bits (643), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 115/161 (71%), Positives = 136/161 (84%)
Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
           RIL +GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLW
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 79  RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
           RHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E RDA++L+FANKQDLP+A    E
Sbjct: 62  RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHE 121
Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
           I +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N  S
Sbjct: 122 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 162

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 102/178 (57%), Positives = 135/178 (75%), Gaps = 1/178 (0%)
Query: 1   MGLTFTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59
           MG  F+ +F +L+ + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YK
Sbjct: 1   MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60  NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119
           N+   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D+DR+  A  ELH ML E+EL+DA
Sbjct: 61  NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
            LLVFANKQD P A++A+E++ +L L  L+ R W I ++ A  GEG+ EGLDWL + I
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 97/165 (58%), Positives = 125/165 (75%)
Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
           +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IR
Sbjct: 1   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR 60
Query: 76  PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
           P WR Y+ NT  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANKQD+  AM 
Sbjct: 61  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 120
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
            +E+ + LGL +L+ R W I  T AT G GL E ++WL   + S+
Sbjct: 121 PSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score =  207 bits (528), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 96/164 (58%), Positives = 124/164 (75%)
Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
           +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG   IR
Sbjct: 3   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 62
Query: 76  PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
           P WR Y+ NT  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANKQD+  AM 
Sbjct: 63  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 122
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
           ++E+ + LGL +L+ R W I  T AT G GL E ++WL   + S
Sbjct: 123 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 166

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 128/180 (71%), Gaps = 1/180 (0%)
Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL F KL+S LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +  KN
Sbjct: 1   MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 59
Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
             F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   ++EL+RML  ++LR A 
Sbjct: 60  THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA 119
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           +L+FANKQD+   M AAEI+  L L S++   W+IQS CA +GEGL +GL+W+++ I  +
Sbjct: 120 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR 179

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score =  187 bits (474), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 132/170 (77%)
Query: 4   TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
           +  +    L A +++R+LM+GLD AGKT+ILY+L LG++VTT+PT+G N+ET++YKNISF
Sbjct: 9   SLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISF 68
Query: 64  TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
            VWD+GGQ  +RP WR YF +T  +I+VVDS DRDR+  A+ EL+ +L+EDELR ++LL+
Sbjct: 69  EVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLI 128
Query: 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
           FANKQDLP+A + AEI ++LG+ S+  R W I  + + +G+GL EG+DWL
Sbjct: 129 FANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWL 178

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score =  186 bits (473), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 123/173 (71%), Gaps = 1/173 (0%)
Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MG+ FT+++ RLF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N
Sbjct: 1   MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
             F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A 
Sbjct: 60  TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
           LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL +GL+W+
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 123/173 (71%), Gaps = 1/173 (0%)
Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MG+ FT+++ RLF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N
Sbjct: 1   MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
             F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A 
Sbjct: 60  TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
           LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL +GL+W+
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 119/165 (72%)
Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
           +E RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG   IR
Sbjct: 6   REXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 65
Query: 76  PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
           P WR Y+ NT  +I+VVDS DRDR+  ++ EL   L E+ELR A+L+VFANKQD   A  
Sbjct: 66  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXT 125
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           ++E  + LGL +L+ R W I  T AT G GL E  +WL   + S+
Sbjct: 126 SSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKSR 170

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score =  176 bits (446), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 117/166 (70%)
Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
           ++E+R+LM+GLD AGKTTIL K    +I T  PT+GFN++T+E++     +WDVGGQ  +
Sbjct: 14  ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 73
Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
           R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A+
Sbjct: 74  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 133
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           ++  I + L L S+R  HW IQ   A +GE L  G+DWL ++I+S+
Sbjct: 134 SSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score =  176 bits (445), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 116/166 (69%)
Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
           ++E+R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ  +
Sbjct: 16  ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
           R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A+
Sbjct: 76  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           +   I + L L S+R  HW IQ   A +GE L  G+DWL ++I+S+
Sbjct: 136 SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 116/166 (69%)
Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
           ++E+R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ  +
Sbjct: 16  ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
           R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A+
Sbjct: 76  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           +   I + L L S+R  HW IQ   A +GE L  G+DWL ++I+S+
Sbjct: 136 SXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 113/160 (70%)
Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
           + +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ 
Sbjct: 19  SHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 78
Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
           +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+FANKQD+   
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
           M  AEI+  L L S++   W+IQ+ CA +GEGL +GL+W+
Sbjct: 139 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 178

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 112/160 (70%)
Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
             +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ 
Sbjct: 18  GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 77
Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
           +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+FANKQD+   
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
           M  AEI+  L L S++   W+IQ+ CA +GEGL +GL+W+
Sbjct: 138 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score =  169 bits (428), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 112/163 (68%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
           +R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGG   +R  
Sbjct: 2   LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSY 61
Query: 78  WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
           WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A++  
Sbjct: 62  WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN 121
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
            I + L L S+R  HW IQ   A +GE L  G+DWL ++I+S+
Sbjct: 122 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 164

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score =  159 bits (403), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 104/155 (67%)
Query: 26  DAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85
           D AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T
Sbjct: 27  DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 86  QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145
            GLI+VVDS DR R  + + EL  +L E+ L  A LL+FANKQDLP A++   I + L L
Sbjct: 87  DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
Query: 146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
            S+R  HW IQ   A +GE L  G+DWL ++I+S+
Sbjct: 147 DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score =  156 bits (395), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 113/165 (68%)
Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
           +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIR
Sbjct: 16  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 76  PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
           P WR YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANKQDL  A  
Sbjct: 76  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           A+EI + L LH++R R W IQS  A +GEG+ +G++W+  N+ +K
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score =  156 bits (395), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 113/165 (68%)
Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
           +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIR
Sbjct: 15  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 74
Query: 76  PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
           P WR YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANKQDL  A  
Sbjct: 75  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 134
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           A+EI + L LH++R R W IQS  A +GEG+ +G++W+  N+ +K
Sbjct: 135 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 110/161 (68%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76
           E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP
Sbjct: 4   EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRP 63
Query: 77  LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136
            WR YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANKQDL  A  A
Sbjct: 64  YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
Query: 137 AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           +EI + L LH++R R W IQS  A +GEG+ +G++W+  N+
Sbjct: 124 SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 109/161 (67%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76
           E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GG  KIRP
Sbjct: 4   EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRP 63
Query: 77  LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136
            WR YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANKQDL  A  A
Sbjct: 64  YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
Query: 137 AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           +EI + L LH++R R W IQS  A +GEG+ +G++W+  N+
Sbjct: 124 SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 114/170 (67%), Gaps = 4/170 (2%)
Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71
             KE+ +L +GLD +GKTTI+ KLK     +   +PTIGF++E  +  ++SFTV+D+ GQ
Sbjct: 18  GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQ 77
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQD 129
            + R LW HY++  Q +IFV+DS+DR R+V A++EL  +LN  ++  R   +L FANK D
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMD 137
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
           L +A+ + +++  L L +++ + W+I ++ A  GEGL EG+DWL + I +
Sbjct: 138 LRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQD 72
           +K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ 
Sbjct: 19  SKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQP 78
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+   +LV  NK+DLPN
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN 138
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           A++  ++ +K+ L +++ R     S      + +   L WL  +  S+
Sbjct: 139 ALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Query: 9   FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISFTVWD 67
           F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  +   N++  +WD
Sbjct: 23  FKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWD 82
Query: 68  VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127
           +GGQ + R +W  Y +    ++++VD+ D++++  +++ELH +L++ +L+   +LV  NK
Sbjct: 83  IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 142
Query: 128 QDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
           +DLP A++  E+ +K+ L +++ R     S      + +   L WL
Sbjct: 143 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 102/178 (57%), Gaps = 10/178 (5%)
Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71
           +K +++++M GLD +GKTTI+ ++K  +  +     T+G+NVET E   ++FTV+D+GG 
Sbjct: 14  SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGA 73
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-------LLVF 124
            K R LW  Y+ N   +IFVVDS+D  R+   + E+  ML  +++R  +        L F
Sbjct: 74  KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFF 133
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWY-IQSTCATSGEGLYEGLDWLSNNIASKA 181
           ANK D   A  AAE+ + L L +L   H + I ++    G G++EG  WL    + ++
Sbjct: 134 ANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 100/168 (59%), Gaps = 1/168 (0%)
Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
           +K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  +   N++  +WD+GGQ 
Sbjct: 19  SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQP 78
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R +W  Y +    ++++VD+ D++++  +++ELH +L++ +L+   +LV  NK+DLP 
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           A++  E+ +K+ L +++ R     S      + +   L WL  +  S+
Sbjct: 139 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 88/169 (52%), Gaps = 7/169 (4%)
Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
           K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   NI FT +D+GG  + R
Sbjct: 22  KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81
Query: 76  PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
            LW+ YF    G++F+VD+ D +R  EAR EL  + N  EL+D   ++  NK D PNA++
Sbjct: 82  RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 141
Query: 136 AAEITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDWLSNNI 177
            AE+   LGL +         QR   +         G  E   WLS  I
Sbjct: 142 EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
           ++L +GLD AGKTT+L+ LK   + T  PT     E +   NI FT +D+GG  + R LW
Sbjct: 3   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 62
Query: 79  RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
           + YF    G++F+VD+ D +R  EAR EL  + N  EL+D   ++  NK D PNA++ AE
Sbjct: 63  KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 122
Query: 139 ITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDWLS 174
           +   LGL +         QR   +         G  E   WLS
Sbjct: 123 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 165

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
           KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG ++ 
Sbjct: 33  KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQA 92
Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
           R +W++Y     G++F+VD  D  R+VE++ EL+ ++ ++ + +  +L+  NK D  +A+
Sbjct: 93  RRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAI 152
Query: 135 NAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           +  ++ +  GL+             L  R   +        +G  EG  WLS  I
Sbjct: 153 SEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 207

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
           KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + 
Sbjct: 20  KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 79
Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
           R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ + +  +L+  NK D P A+
Sbjct: 80  RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 139
Query: 135 NAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           +   + +  GL+             L  R   +        +G  EG  W++  I
Sbjct: 140 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 194

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
           KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + 
Sbjct: 23  KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 82
Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
           R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ + +  +L+  NK D P A+
Sbjct: 83  RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 142
Query: 135 NAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           +   + +  GL+             L  R   +        +G  EG  W++  I
Sbjct: 143 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
           KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + 
Sbjct: 14  KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQA 73
Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
           R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ + +  +L+  NK D P A+
Sbjct: 74  RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 133
Query: 135 NAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           +   + +  GL+             L  R   +        +G  EG  W++  I
Sbjct: 134 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 188

>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T +PT G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 176 TRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 18  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQD 72
           M+IL++G    GK+ +L +    K      T   I F ++TV+   K +   +WD  GQ+
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R +   Y++   G+I V D  D +R      +  + +NE    +A LL+  NK D+  
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122
Query: 133 AMNAAE 138
            +  A+
Sbjct: 123 RVVTAD 128

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 18  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQD 72
           M+IL++G    GK+ +L +    K      T   I F ++TV+   K +   +WD  GQ+
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R +   Y++   G+I V D  D +R      +  + +NE    +A LL+  NK D+  
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139
Query: 133 AMNAAE 138
            +  A+
Sbjct: 140 RVVTAD 145

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 18  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQD 72
           M+IL++G    GK+ +L +    K      T   I F ++TV+   K +   +WD  GQ+
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R +   Y++   G+I V D  D +R      +  + +NE    +A LL+  NK D+  
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 126
Query: 133 AMNAAE 138
            +  A+
Sbjct: 127 RVVTAD 132

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 18  MRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQ 71
            ++L++G    GK+++L +       G  +TTI  + F + TVE   + +   +WD  GQ
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG-VDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           ++ R +   Y++ T G+I V D    +  V  +  LH +       D   ++  NK D P
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDP 126

>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 151 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 210
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 211 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247

>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273

>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 150 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 209
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 210 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 246

>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 148 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244

>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 146 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242

>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 151 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 210
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 211 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247

>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 147 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 206
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 207 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 243

>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 152 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 211
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 212 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 248

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K I   +WD  G
Sbjct: 10  FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
           Q++ R +   Y++   G+I V D  D++     +    E+ R  +E+  +    L+  NK
Sbjct: 68  QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK----LLVGNK 123
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
            DL      +   A E  D LG+  L
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGIPFL 149

>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 153 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 249

>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 148 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K I   +WD  G
Sbjct: 10  FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
           Q++ R +   Y++   G+I V D  D++     +    E+ R  +E+  +    L+  NK
Sbjct: 68  QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK----LLVGNK 123
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
            DL      +   A E  D LG+  L
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGIPFL 149

>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 145 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 204
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 205 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 241

>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 179 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 238
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 239 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 275

>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 146 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242

>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 46  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
           + T G       +K+++F ++DVGGQ   R  W H F+    +IF V  +D D V+   +
Sbjct: 150 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 106 ELHRMLNEDELRDAV----------LLVFANKQDL 130
           E++RM    +L D++          +++F NK+DL
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244

>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 153 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 249

>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 153 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 249

>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 146 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 242

>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 176 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 272

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 19  RILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQDK 73
           +IL++G    GK+ +L +    K      T   I F ++TV+   K +   +WD  GQ++
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
            R +   Y++   G+I V D  D +R      +  + +NE    +A LL+  NK D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDITD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETR 123
Query: 134 MNAAE 138
           +  A+
Sbjct: 124 VVTAD 128

>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           + + T G       +K+++F ++DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 179 SRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 238
Query: 104 RDELHRM----------LNEDELRDAVLLVFANKQDL 130
            +E++RM           N     D  +++F NK+DL
Sbjct: 239 DEEMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDL 275

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 18  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYK------------NIS 62
           +++L +G    GKTT LY+    K      T   I F  + V Y              + 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
             +WD  GQ++ R L   +F++  G + + D   +   +  R+ + ++       +  ++
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 123 VFANKQDLP-----NAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162
           +  NK DLP     N   A E+ DK G+        Y +++ AT 
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIP-------YFETSAATG 183

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            ++L++G    GKT +L++       +T I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R +   Y++   G++ V D  +       R+ + R + E    D   ++  NK D+ +
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI-RNIEEHASADVEKMILGNKCDVND 127
Query: 133 AMNAA-EITDKLGL 145
               + E  +KL L
Sbjct: 128 KRQVSKERGEKLAL 141

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 19  RILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQDK 73
           +IL++G    GK+ +L +    K      T   I F ++TV+   K +   +WD  GQ++
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
            R +   Y++   G+I V D  D +R      +  + +NE    +A LL+  NK D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETR 123
Query: 134 MNAAE 138
           +  A+
Sbjct: 124 VVTAD 128

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            ++L++G    GKT +L++       +T I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R +   Y++   G++ V D  +       R+ + R + E    D   ++  NK D+ +
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI-RNIEEHASADVEKMILGNKCDVND 125
Query: 133 AMNAA-EITDKLGL 145
               + E  +KL L
Sbjct: 126 KRQVSKERGEKLAL 139

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K I   +WD  G
Sbjct: 7   FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
           Q++ R +   Y++   G+I V D  D++     +    E+ R  +E+  +    L+  NK
Sbjct: 65  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 120
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
            DL      +   A E  D LG+  L
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFL 146

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 21/145 (14%)
Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGGQ 71
           ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K I   +WD  GQ
Sbjct: 1   KLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 58
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQ 128
           ++ R +   Y++   G+I V D  D++     +    E+ R  +E+  +    L+  NK 
Sbjct: 59  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNKC 114
Query: 129 DLP-----NAMNAAEITDKLGLHSL 148
           DL      +   A E  D LG+  L
Sbjct: 115 DLTTKKVVDYTTAKEFADSLGIPFL 139

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K I   +WD  G
Sbjct: 7   FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
           Q++ R +   Y++   G+I V D  D++     +    E+ R  +E+  +    L+  NK
Sbjct: 65  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 120
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
            DL      +   A E  D LG+  L
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFL 146

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K I   +WD  G
Sbjct: 34  FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 91
Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
           Q++ R +   Y++   G+I V D  D++     +    E+ R  +E+  +    L+  NK
Sbjct: 92  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 147
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
            DL      +   A E  D LG+  L
Sbjct: 148 CDLTTKKVVDYTTAKEFADSLGIPFL 173

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K I   +WD  G
Sbjct: 17  FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
           Q++ R +   Y++   G+I V D  D++     +    E+ R  +E+  +    L+  NK
Sbjct: 75  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 130
Query: 128 QDLP-----NAMNAAEITDKLGLHSLR 149
            DL      +   A E  D LG+  L 
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGIPFLE 157

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K I   +WD  G
Sbjct: 26  FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 83
Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
           Q++ R +   Y++   G+I V D  D++     +    E+ R  +E+  +    L+  NK
Sbjct: 84  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 139
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
            DL      +   A E  D LG+  L
Sbjct: 140 CDLTTKKVVDYTTAKEFADSLGIPFL 165

>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DV GQ   R  W H F+    +IF V  +D D V+  
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273

>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVG Q   R  W H F+    +IF V  +D D V+  
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 11/166 (6%)
Query: 18  MRILMVGLDAAGKTTILYKLKLG----EIVTTIPTIGFNVET--VEYKNISFTVWDVGGQ 71
           ++IL++G    GK+++L +        E+  TI  + F V+T  V+       +WD  GQ
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           ++ R L   Y++  QG+I V D   RD  V+  + L+ +       D V  +  NK D  
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKE 134
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           N     E+    GL   R+         A + +G+    + L   I
Sbjct: 135 N----REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 21/146 (14%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
            ++L++G    GK  +L  L+  +   T   I TIG  F + T+E   K I   +WD  G
Sbjct: 17  FKLLLIGDSGVGKNCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
           Q++ R +   Y++   G+I V D  D++     +    E+ R  +E+  +    L+  NK
Sbjct: 75  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 130
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
            DL      +   A E  D LG+  L
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGIPFL 156

>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DV GQ   R  W H F+    +IF V  +D D V+  
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 104 RDELHRM----------LNEDELRDAVLLVFANKQDL 130
            +E++RM           N     D  +++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKCFTDTSIILFLNKKDL 273

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 17  EMRILMVGLDAAGKTTILYKLK---LGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQ 71
           +++++++G    GKT+++ +       E   +   + F ++TVE   K I   +WD  GQ
Sbjct: 26  KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH---RMLNEDELRDAVLLVFANKQ 128
           ++   +   Y+++ +G+I V D   +    E  D+L    +M+++    DA LL+  NK 
Sbjct: 86  ERFNSITSAYYRSAKGIILVYDITKK----ETFDDLPKWMKMIDKYASEDAELLLVGNKL 141
Query: 129 DL 130
           D 
Sbjct: 142 DC 143

>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +K++ F ++DVGG    R  W H F+    +IF V  +D D V+  
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E++RM    +L D++          +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETV--EYKNISFTVWDVGG 70
           ++L++G    GK+ +L  L+  +   T   I TIG  F + T+  E K +   +WD  G
Sbjct: 10 FKLLLIGDSGVGKSCLL--LRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAG 67
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRD 98
          Q++ R +   Y++   G+I V D  DRD
Sbjct: 68 QERFRTITSSYYRGAHGIIIVYDVTDRD 95

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--ISFTVWDVGG 70
           +E+++ ++G    GK++I+++         I PTIG  F  +TV+Y+N    F +WD  G
Sbjct: 4   RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
           Q++ R L   Y++ +   I V D    +     ++ + R L +      V+ +  NK DL
Sbjct: 64  QERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV-RELRQHGPPSIVVAIAGNKCDL 122
Query: 131 PNAMNAAE 138
            +     E
Sbjct: 123 TDVREVME 130

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVE--TVEYKNISFTVWDVGGQD 72
           ++++++G  A GK++I+ +    +      PTIG  F  +  T+    + F +WD  GQ+
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           +   L   Y++N Q  + V D       ++AR  + + L+E   +D ++ +  NK D   
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWV-KELHEQASKDIIIALVGNKIDXLQ 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
                ++  + G     ++      T A +GE +
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENV 156

>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           T + T G       +KN+ F ++DVGGQ   R  W H F++   +IF V  +  D+V+  
Sbjct: 157 TRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHE 216
Query: 104 RDELHRM----------LNEDELRDAVLLVFANKQDL 130
            +  +RM           N     D  +++F NK+DL
Sbjct: 217 DETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDL 253

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
            ++L++G    GK+ +L  L+  +   T   I TIG  F ++TVE   K +   +WD  G
Sbjct: 9   FKLLLIGNSGVGKSCLL--LRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
           Q++ R +   Y++ + G+I V D  D++     +    E+ R      L+    L+  NK
Sbjct: 67  QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNK 122
Query: 128 QDLPN 132
            DL +
Sbjct: 123 CDLKD 127

>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
           + + T G       +K+++F  +DVGGQ   R  W H F+    +IF V  +D D V+  
Sbjct: 173 SRVKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 232
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
            +E +R     +L D++          +++F NK+DL
Sbjct: 233 DEEXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDL 269

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
            ++L++G    GK+ +L  L+  +   T   I TIG  F ++TVE   K +   +WD  G
Sbjct: 9   FKLLLIGNSGVGKSCLL--LRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
           Q++ R +   Y++ + G+I V D  D++     +    E+ R      L+    L+  NK
Sbjct: 67  QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNK 122
Query: 128 QDLPN 132
            DL +
Sbjct: 123 CDLKD 127

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
            ++L++G    GK+ +L  L+  +   T   I TIG  F ++TVE   K +   +WD  G
Sbjct: 22  FKLLLIGNSGVGKSCLL--LRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 79
Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
           Q++ R +   Y++ + G+I V D  D++     +    E+ R      L+    L+  NK
Sbjct: 80  QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNK 135
Query: 128 QDLPN 132
            DL +
Sbjct: 136 CDLKD 140

>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 47  PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE 106
           PT G +     +K++ F ++DVGGQ   R  W   F+    +IF V  +D D+V+    +
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQ 225
Query: 107 LHRMLNEDELRDAV----------LLVFANKQDL 130
            +RM    +L D++          +++F NK+DL
Sbjct: 226 TNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 259

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 21/146 (14%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K I   +WD  G
Sbjct: 9   FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 66
Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
           Q++ R +   Y++   G+I V D  D++     +    E+ R  +E+  +    L+   K
Sbjct: 67  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGIK 122
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
            DL      +   A E  D LG+  L
Sbjct: 123 CDLTTKKVVDYTTAKEFADSLGIPFL 148

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--ISFTVWDV 68
           A +E+++ ++G    GK++I+++         I PTIG  F  +TV+Y+N    F +WD 
Sbjct: 3   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 62
Query: 69  GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
            G ++ R L   Y++ +   I V D    +     ++ + R L +      V+ +  NK 
Sbjct: 63  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV-RELRQHGPPSIVVAIAGNKC 121
Query: 129 DLPNAMNAAE 138
           DL +     E
Sbjct: 122 DLTDVREVME 131

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV-EYKNISFT--VWDVG 69
           KK ++I++VG  A GKT +L     GEI T  +PT+  N   V +YKN  F   +WD  
Sbjct: 19 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 78
Query: 70 GQ---DKIRPL 77
          GQ   D++RPL
Sbjct: 79 GQEEYDRLRPL 89

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV-EYKNISFT--VWDVG 69
           KK ++I++VG  A GKT +L     GEI T  +PT+  N   V +YKN  F   +WD  
Sbjct: 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 79
Query: 70 GQ---DKIRPL 77
          GQ   D++RPL
Sbjct: 80 GQEEYDRLRPL 90

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
           +L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 1   LLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 58
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           + R +   Y++   G+I V D  D++    V +   E+ R  +E+  +    L+  NK D
Sbjct: 59  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNKCD 114
Query: 130 LP 131
           L 
Sbjct: 115 LT 116

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 18  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKN------------IS 62
           +++L +G    GKTT LY+    K      T   I F  + V Y              + 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
             +WD  G ++ R L   +F++  G + + D   +   +  R+ + ++       +  ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 123 VFANKQDLP-----NAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161
           +  NK DLP     N   A E+ +K G+        Y +++ AT
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIP-------YFETSAAT 168

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN----VETVEYKNISFTVWDVGGQ 71
            ++++VG    GKT +L + K G  +  T I T+G +    V  V+   +   +WD  GQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
           ++ R +   Y+++   L+ + D  ++   D +     E+H    E    D  L++  NK 
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIH----EYAQHDVALMLLGNKV 126
Query: 129 D 129
           D
Sbjct: 127 D 127

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 18  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYK------------NIS 62
           +++L +G    GKTT LY+    K      T   I F  + V Y              + 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
             +WD  G ++ R L   +F++  G + + D   +   +  R+ + ++       +  ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 123 VFANKQDLP-----NAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161
           +  NK DLP     N   A E+ +K G+        Y +++ AT
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIP-------YFETSAAT 168

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 8   LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--IS 62
           L  R  A +E+++ ++G    GK++I+ +         I PTIG  F  +TV   N    
Sbjct: 14  LVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHK 73
Query: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
           F +WD  GQ++   L   Y++ +   + V D   +D     +  + + L E    + V+ 
Sbjct: 74  FLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWV-KELKEHGPENIVMA 132
Query: 123 VFANKQDL 130
           +  NK DL
Sbjct: 133 IAGNKCDL 140

>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 46  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
           + T G       +K+++F ++DVGGQ   R  W H F+    +IF+   +  D V+   D
Sbjct: 149 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDD 208
Query: 106 ELHRMLNEDELRDAV----------LLVFANKQDL 130
           E++RM     L +++          +++F NK+D+
Sbjct: 209 EVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDV 243

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VEYKNISFTVWDVGGQD 72
            +++++G    GKT+++ +    +     I T+G +  T    +  K ++  +WD  GQ+
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 129
           +   L   Y++++ G I V D  D D   + ++   EL +ML      +  L +  NK D
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 122
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
           L    + +    +    S+  +H++   T A   +G+ E
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYH---TSAKQNKGIEE 158

>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 46  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
           +PT G      + +++ F + DVGGQ   R  W H F+N   ++F+V  ++ D+V+   D
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 106 ELHRMLNEDEL----------RDAVLLVFANKQDL 130
             +RM     L          +++ +++F NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272

>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 46  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
           +PT G      + +++ F + DVGGQ   R  W H F+N   ++F+V  ++ D+V+   D
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 239
Query: 106 ELHRMLNEDEL----------RDAVLLVFANKQDL 130
             +RM     L          +++ +++F NK+DL
Sbjct: 240 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 274

>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 46  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
           +PT G      + +++ F + DVGGQ   R  W H F+N   ++F+V  ++ D+V+   D
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211
Query: 106 ELHRMLNEDEL----------RDAVLLVFANKQDL 130
             +RM     L          +++ +++F NK+DL
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246

>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 45  TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR 104
            +PT G      + +++ F + DVGGQ   R  W H F+N   ++F+V  ++ D+V+   
Sbjct: 171 CVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 230
Query: 105 DELHRMLNEDEL----------RDAVLLVFANKQDL 130
           D  +RM     L          +++ +++F NK+DL
Sbjct: 231 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266

>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 46  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
           +PT G      + +++ F + DVGGQ   R  W H F+N   ++F+V  ++ D+V+   D
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 106 ELHRMLNEDEL----------RDAVLLVFANKQDL 130
             +RM     L          +++ +++F NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 27/164 (16%)
Query: 18  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYK------------NIS 62
           +++L +G    GKTT LY+    K      T   I F  + V Y              + 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
             +WD  G ++ R L   +F++  G +   D   +   +  R+   ++       +  ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 123 VFANKQDLP-----NAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161
           +  NK DLP     N   A E+ +K G+        Y +++ AT
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIP-------YFETSAAT 168

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
           + +++++G  A GK++++ +   G   E   +     F  +TV  +   + F +WD  GQ
Sbjct: 7   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
           ++   L   Y++  Q  I V D  + +    A++   EL R  +     + V+ +  NK 
Sbjct: 67  ERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 122
Query: 129 DLPN 132
           DL N
Sbjct: 123 DLAN 126

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 10  SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFT 64
           SR+F     +I+++G    GKT + Y+   G     T  TIG +       ++ + I   
Sbjct: 27  SRIF-----KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 65  VWDVGGQDKIR-PLWRHYFQNTQGLIFVVDSND 96
           +WD  GQ++ R  + +HY++N   ++FV D  +
Sbjct: 82  LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTN 114

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 10  SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFT 64
           SR+F     +I+++G    GKT + Y+   G     T  TIG +       ++ + I   
Sbjct: 18  SRIF-----KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 72
Query: 65  VWDVGGQDKIR-PLWRHYFQNTQGLIFVVD 93
           +WD  GQ++ R  + +HY++N   ++FV D
Sbjct: 73  LWDTAGQERFRKSMVQHYYRNVHAVVFVYD 102

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 27/164 (16%)
Query: 18  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKN------------IS 62
           +++L +G    GKTT LY+    K      T   I F  + V Y              + 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
             +WD  G ++ R L   +F++  G +   D   +   +  R+   ++       +  ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 123 VFANKQDLP-----NAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161
           +  NK DLP     N   A E+ +K G+        Y +++ AT
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIP-------YFETSAAT 168

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 13/140 (9%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN---ISFTVWDVGGQ 71
            +IL++G  + GKT+ L++          + T+G  F V+T+ Y+N   I   +WD  GQ
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAGQ 64
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           ++ R +   Y++   G I + D  + +     +D     +      +A +L+  NK D+ 
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDME 123
Query: 132 N-----AMNAAEITDKLGLH 146
           +     +    ++ D LG  
Sbjct: 124 DERVVSSERGRQLADHLGFE 143

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNISFTVWDVGGQ 71
           + +++++G  A GK++++ +   G+       TIG  F  +TV  +   + F +WD  GQ
Sbjct: 7   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
           ++   L   Y++  Q  I V D  + +    A++   EL R  +     + V+ +  NK 
Sbjct: 67  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 122
Query: 129 DLPN 132
           DL N
Sbjct: 123 DLAN 126

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
           + +++++G  A GK++++ +   G   E   +     F  +TV  +   + F +WD  GQ
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
           ++   L   Y++  Q  I V D  + +    A++   EL R  +     + V+ +  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 121
Query: 129 DLPN 132
           DL N
Sbjct: 122 DLAN 125

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 15/159 (9%)
Query: 18  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
            +++++G    GKT+++      K     I T   +       +  K ++  +WD  GQ+
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 129
           +   L   Y++++ G I V D  D D   + ++   EL +ML      +  L +  NK D
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 122
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
           L    + +    +    S+  +H++   T A   +G+ E
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYH---TSAKQNKGIEE 158

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNISFTVWDVGGQD 72
            ++L++G  + GKT+ L++          + T+G  F V+TV    K I   +WD  GQ+
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R +   Y++   G + + D  +++     +D   ++         V+LV  NK DL +
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV-GNKCDLED 141
Query: 133 -----AMNAAEITDKLGLH 146
                A +   + D LG  
Sbjct: 142 ERVVPAEDGRRLADDLGFE 160

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 15/159 (9%)
Query: 18  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
            +++++G    GKT+++      K     I T   +       +  K ++  +WD  GQ+
Sbjct: 21  FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 129
           +   L   Y++++ G I V D  D D   + ++   EL +ML      +  L +  NK D
Sbjct: 81  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 136
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
           L    + +    +    S+  +H++   T A   +G+ E
Sbjct: 137 LEKERHVSIQEAESYAESVGAKHYH---TSAKQNKGIEE 172

>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp Length = 362

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 47  PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE 106
           PT G +    E KN+ F + DVGGQ   R  W   F +   ++F+V S++ D+V+    +
Sbjct: 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 246
Query: 107 LHRM----------LNEDELRDAVLLVFANKQDL 130
            +R+          +N     +  +++F NK DL
Sbjct: 247 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN---ISFTVWDVGGQ 71
            +I+++G    GK+ +L +    E  + +  TIG  F  ++++ KN   I   +WD  GQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           ++ R +   Y++   G + V D   ++   E  ++  + L ++   + V+L+  NK DL 
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNS-FENIEKWLKELRDNADSNIVILLVGNKSDLK 126

>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp-Alf4 Length = 338

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 47  PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-------- 98
           PT G +    E KN+ F + DVGGQ   R  W   F +   ++F+V S++ D        
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 99  --RVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
             R+ E+ +    ++N     +  +++F NK DL
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVGGQD 72
            ++++VG  + GKT ++ + K G        TIG  F ++T+E   K +   +WD  GQ+
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR 97
           + R + + Y+++  G I   D   R
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKR 114

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETV--EYKNISFTVWDVGGQ 71
           + +++++G  A GK++++ +   G+       TIG  F  +TV  +   + F +WD  GQ
Sbjct: 3   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
           ++   L   Y++  Q  I V D  + D    A++   EL R  +     + V+ +  NK 
Sbjct: 63  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKA 118
Query: 129 DLPN 132
           DL +
Sbjct: 119 DLAS 122

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
           + +++++G  A GK++++ +   G   E   +     F  +TV  +   + F +WD  GQ
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
           ++   L   Y++  Q  I V D  + D    A++   EL R  +     + V+ +  NK 
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKA 120
Query: 129 DLPN 132
           DL +
Sbjct: 121 DLAS 124

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVET--VEYKNISFTVWDV 68
           ++K  +I++ G  A GK++ L +L   E    I  T+G  F ++T  V+ +     +WD 
Sbjct: 25  SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDT 84
Query: 69  GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANK 127
            GQ++ R + + YF+   G++ + D       +  R+ +  +  ED   + V +++  NK
Sbjct: 85  AGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI--EDAAHETVPIMLVGNK 142
Query: 128 QDL 130
            D+
Sbjct: 143 ADI 145

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETV--EYKNISFTVWDVGGQ 71
           + +++++G  A GK++++ +   G+       TIG  F  ++V  +   + F +WD  GQ
Sbjct: 8   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 67
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQ 128
           ++   L   Y++  Q  I V D  +++    A+    EL R  +       V+ +  NK 
Sbjct: 68  ERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASP----SIVIALAGNKA 123
Query: 129 DLPN 132
           DL N
Sbjct: 124 DLAN 127

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
          + ++++VG    GKTT + +   GE     +PT+G  V  + +      I F VWD  GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
          +K   L   Y+   Q  I + D   R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSR 95

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
           + +++++G    GK++++ +   G   E   +     F  +TV  +   + F +WD  GQ
Sbjct: 6   QFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
           ++   L   Y++  Q  I V D  + +    A++   EL R  +     + V+ +  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 121
Query: 129 DLPN 132
           DL N
Sbjct: 122 DLAN 125

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNISFTVWDVGGQ 71
           + +++++G    GK++++ +   G+       TIG  F  +TV  +   + F +WD  GQ
Sbjct: 6   QFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
           ++   L   Y++  Q  I V D  + +    A++   EL R  +     + V+ +  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 121
Query: 129 DLPN 132
           DL N
Sbjct: 122 DLAN 125

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNISFTVWDVGGQ 71
           + +++++G    GK++++ +   G+       TIG  F  +TV  +   + F +WD  GQ
Sbjct: 6   QFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
           ++   L   Y++  Q  I V D  + +    A++   EL R  +     + V+ +  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 121
Query: 129 DLPN 132
           DL N
Sbjct: 122 DLAN 125

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
          + ++++VG    GKTT + +   GE     +PT+G  V  + +      I F VWD  GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
          +K   L   Y+   Q  I + D   R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSR 95

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 18  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
            + L++G    GK+ +L+     K K     T     G  V  V  K +   +WD  GQ+
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQD 129
           + R + R Y++   G + V D   R    E  + L   L +       + V+++  NK+D
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSR----ETYNSLAAWLTDARTLASPNIVVILCGNKKD 141
Query: 130 L 130
           L
Sbjct: 142 L 142

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
           + +++++G    GK++++ +   G   E   +     F  +TV  +   + F +WD  GQ
Sbjct: 6   QFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
           ++   L   Y++  Q  I V D  + +    A++   EL R  +     + V+ +  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 121
Query: 129 DLPN 132
           DL N
Sbjct: 122 DLAN 125

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
           + +++++G    GK++++ +   G   E   +     F  +TV  +   + F +WD  GQ
Sbjct: 6   QFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
           ++   L   Y++  Q  I V D  + +    A++   EL R  +     + V+ +  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 121
Query: 129 DLPN 132
           DL N
Sbjct: 122 DLAN 125

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 72
            + +++G    GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ+
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
           + R + R Y++   G + V D   R         L    N     + V+++  NK DL
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADL 132

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 18  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
            + L++G    GK+ +L+     K K     T     G  +  V  K +   +WD  GQ+
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQD 129
           + R + R Y++   G + V D   R    E  + L   L +  +   ++ V+++  NK+D
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSR----ETYNALTNWLTDARMLASQNIVIILCGNKKD 127
Query: 130 L 130
           L
Sbjct: 128 L 128

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNISFTVWDVGGQD 72
            ++L++G  + GKT+ L++          + T+G  F V+TV    K +   +WD  GQ+
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
           + R +   Y++   G I + D  + +     +D
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQD 116

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 18  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
            + L++G    GK+ +L+     K K     T     G  +  V  K +   +WD  GQ+
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL--HRMLNEDELRDAVLLVFANKQDL 130
           + R + R Y++   G + V D   R+      + L   RML     ++ V+++  NK+DL
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS---QNIVIILCGNKKDL 127

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQ 71
           + +++ +G  A GKT+I+ +            TIG +  +    ++   +   +WD  GQ
Sbjct: 1   KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           ++ R L   Y +++   I V D  +R         +  +LNE   +D ++ +  NK DL 
Sbjct: 61  ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE-RGKDVIIALVGNKTDLG 119
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
           +     ++T + G    ++ +     T A +G  +
Sbjct: 120 DLR---KVTYEEGXQKAQEYNTXFHETSAKAGHNI 151

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
           + +++++G  A GK++++ +   G   E   +     F  +TV  +   + F +WD  G 
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
           ++   L   Y++  Q  I V D  + +    A++   EL R  +     + V+ +  NK 
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 120
Query: 129 DLPN 132
           DL N
Sbjct: 121 DLAN 124

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 20/148 (13%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK------------NIS 62
           ++ L +G    GKT++LY+   G+  +  I T+G  F  + V Y+             I 
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
             +WD  G ++ R L   +F++  G + + D  +    +  R+ + ++       +  ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 123 VFANKQDLPNAM-----NAAEITDKLGL 145
           +  NK DL +        A E+ +K G+
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGI 159

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
           +I+++G    GK+ +L +    E  + +  TIG    T    +E K I   +WD  GQ+
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 73 KIRPLWRHYFQNTQGLIFVVD 93
          + R +   Y++   G + V D
Sbjct: 74 RYRAITSAYYRGAVGALIVYD 94

>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor Length = 214

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 9/153 (5%)
Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---ISFTVWDVGGQDKIR- 75
           +L VGL  +GKT +  +L  G+   T  +I  +    +  N    S T+ D+ G + +R 
Sbjct: 10  VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 69
Query: 76  PLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL--HRMLNEDELRDA-VLLVFANKQDLPN 132
            L   +  + + ++FVVDS    R V+   E     +++   L+++  LL+  NKQD+  
Sbjct: 70  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129
Query: 133 AMNAAEITDKL--GLHSLRQRHWYIQSTCATSG 163
           A +A  I  +L   L++LR       ST  +S 
Sbjct: 130 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 72
            + +++G    GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ 
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
           + R + R Y++   G + V D   R         L    N     + V+++  NK DL
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADL 147

>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp Length = 338

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 47  PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-------- 98
           PT G +    E KN+ F + DVGG    R  W   F +   ++F+V S++ D        
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 99  --RVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
             R+ E+ +    ++N     +  +++F NK DL
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256

>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRM 110
           ++F ++DVGGQ   R  W   F +   +IFVV S          N  +R+ EA +    +
Sbjct: 203 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 262
Query: 111 LNEDELRDAVLLVFANKQDL 130
            N   LR   +++F NKQDL
Sbjct: 263 WNNRWLRTISVILFLNKQDL 282

>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRM 110
           ++F ++DVGGQ   R  W   F +   +IFVV S          N  +R+ EA +    +
Sbjct: 203 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 262
Query: 111 LNEDELRDAVLLVFANKQDL 130
            N   LR   +++F NKQDL
Sbjct: 263 WNNRWLRTISVILFLNKQDL 282

>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRM 110
           ++F ++DVGGQ   R  W   F +   +IFVV S          N  +R+ EA +    +
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 111 LNEDELRDAVLLVFANKQDL 130
            N   LR   +++F NKQDL
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 17  EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETV--EYKNISFTVWDVGGQ 71
           + +++++G  A GK++++ +   G+       TIG  F  +TV  +   + F +WD  G 
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
           ++   L   Y++  Q  I V D  + D    A++   EL R  +     + V+ +  NK 
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKA 120
Query: 129 DLPN 132
           DL +
Sbjct: 121 DLAS 124

>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRM 110
           ++F ++DVGGQ   R  W   F +   +IFVV S          N  +R+ EA +    +
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 111 LNEDELRDAVLLVFANKQDL 130
            N   LR   +++F NKQDL
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296

>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRM 110
           ++F ++DVGGQ   R  W   F +   +IFVV S          N  +R+ EA +    +
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 111 LNEDELRDAVLLVFANKQDL 130
            N   LR   +++F NKQDL
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
            +++++G    GK+ +L +    E  + +  TIG    T    V+ K I   +WD  GQ+
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
           + R +   Y++   G + V D   +    E  +   + L +    + V+++  NK DL
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIA-KHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 137

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
            +++++G    GK+ +L +    E  + +  TIG    T    V+ K I   +WD  GQ+
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
           + R +   Y++   G + V D   +    E  +   + L +    + V+++  NK DL
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIA-KHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 146

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 18  MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
            + +++G    GK+ +L +           +T     G  + T++ K I   +WD  GQ+
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
             R + R Y++   G + V D   RD        L          + V+++  NK DL +
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSN-SNMVIMLIGNKSDLES 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-128
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-127
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-126
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-126
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-126
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-126
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-125
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-123
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-123
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-120
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-120
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-119
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-119
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-116
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-114
2fh5_B	214	SR-beta, signal recognition particle receptor beta	4e-86
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	8e-78
1nrj_B	218	SR-beta, signal recognition particle receptor beta	4e-73
2ged_A	193	SR-beta, signal recognition particle receptor beta	4e-72
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	3e-60
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-53
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-50
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-37
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-21
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-10
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-09
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	2e-09
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-09
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	4e-09
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	6e-09
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-08
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-08
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-08
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-08
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-08
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	4e-08
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	4e-08
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	5e-08
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	6e-08
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	9e-08
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	9e-08
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	9e-08
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-07
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-07
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-07
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-07
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-07
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	2e-07
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-07
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-07
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-07
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-07
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-07
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-07
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-07
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-07
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-07
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-07
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-07
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-07
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-07
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	3e-07
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-07
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	3e-07
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	3e-07
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	4e-07
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	4e-07
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	4e-07
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	4e-07
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	5e-07
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-07
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	5e-07
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	5e-07
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	6e-07
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	6e-07
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	6e-07
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	7e-07
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	7e-07
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	9e-07
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	9e-07
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-06
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-06
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-06
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-06
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-06
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-06
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-06
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-06
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	3e-06
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	3e-06
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	5e-06
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	6e-06
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	6e-06
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-05
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-05
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	1e-05
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-05
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-05
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-05
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-05
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-05
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	3e-05
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	3e-05
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	4e-05
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	5e-05
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-04
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	5e-04

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  357 bits (918), Expect = e-128
 Identities = 95/184 (51%), Positives = 135/184 (73%), Gaps = 3/184 (1%)

Query: 1   MGLTFTKL---FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE 57
           MG     L      L A +++R+LM+GLD AGKT+ILY+L LG++VTT+PT+G N+ET++
Sbjct: 3   MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62

Query: 58  YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117
           YKNISF VWD+GGQ  +RP WR YF +T  +I+VVDS DRDR+  A+ EL+ +L+EDELR
Sbjct: 63  YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122

Query: 118 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
            ++LL+FANKQDLP+A + AEI ++LG+ S+  R W I  + + +G+GL EG+DWL   +
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182

Query: 178 ASKA 181
             + 
Sbjct: 183 REQG 186

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  354 bits (910), Expect = e-127
 Identities = 53/186 (28%), Positives = 103/186 (55%), Gaps = 6/186 (3%)

Query: 1   MGLTFT-----KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE 54
           MG +              +K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+ 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR 60

Query: 55  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114
            +   N++  +WD+GGQ + R +W  Y +    ++++VD+ D++++  +++ELH +L++ 
Sbjct: 61  KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 120

Query: 115 ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174
           +L+   +LV  NK+DLP A++  E+ +K+ L +++ R     S      + +   L WL 
Sbjct: 121 QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180

Query: 175 NNIASK 180
            +  S+
Sbjct: 181 QHSKSR 186

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  352 bits (906), Expect = e-126
 Identities = 85/180 (47%), Positives = 126/180 (70%), Gaps = 1/180 (0%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MG+ FT+++ RLF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N
Sbjct: 1   MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
             F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A 
Sbjct: 60  TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL +GL+W+ + +  +
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  352 bits (906), Expect = e-126
 Identities = 143/180 (79%), Positives = 158/180 (87%), Gaps = 4/180 (2%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
            G     LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 17  RG----SLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 72

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ DEL +ML EDELRDAV
Sbjct: 73  ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQD+PNAM  +E+TDKLGL  LR R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct: 133 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  351 bits (904), Expect = e-126
 Identities = 86/180 (47%), Positives = 121/180 (67%), Gaps = 1/180 (0%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           MGL  T L      ++E+R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++ 
Sbjct: 3   MGL-LTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG 61

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
               +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A 
Sbjct: 62  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LL+FANKQDLP A++   I + L L S+R  HW IQ   A +GE L  G+DWL ++I+S+
Sbjct: 122 LLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  350 bits (900), Expect = e-126
 Identities = 102/181 (56%), Positives = 136/181 (75%), Gaps = 1/181 (0%)

Query: 1   MGLTFTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59
           MG  F+ +F +L+ + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YK
Sbjct: 1   MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60

Query: 60  NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119
           N+   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D+DR+  A  ELH ML E+EL+DA
Sbjct: 61  NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120

Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
            LLVFANKQD P A++A+E++ +L L  L+ R W I ++ A  GEG+ EGLDWL + I  
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180

Query: 180 K 180
           +
Sbjct: 181 E 181

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  348 bits (895), Expect = e-125
 Identities = 96/169 (56%), Positives = 125/169 (73%)

Query: 12  LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 71
               +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG 
Sbjct: 2   SHMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 61

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
             IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANKQD+ 
Sbjct: 62  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121

Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
            AM ++E+ + LGL +L+ R W I  T AT G GL E ++WL   + S+
Sbjct: 122 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  344 bits (886), Expect = e-123
 Identities = 83/176 (47%), Positives = 116/176 (65%), Gaps = 2/176 (1%)

Query: 5   FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
             KL S     +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     
Sbjct: 6   LRKLKS--APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLN 63

Query: 65  VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
           VWD+GGQ KIRP WR YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+F
Sbjct: 64  VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 123

Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           ANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ +G++W+  N+ +K
Sbjct: 124 ANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  344 bits (884), Expect = e-123
 Identities = 66/185 (35%), Positives = 93/185 (50%), Gaps = 9/185 (4%)

Query: 1   MGLTFTKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59
            G  F  + + L    K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   
Sbjct: 7   FGW-FRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIG 65

Query: 60  NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119
           NI FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  + N  EL+D 
Sbjct: 66  NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV 125

Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDW 172
             ++  NK D PNA++ AE+   LGL +         QR   +         G  E   W
Sbjct: 126 PFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQW 185

Query: 173 LSNNI 177
           LS  I
Sbjct: 186 LSQYI 190

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  337 bits (866), Expect = e-120
 Identities = 82/181 (45%), Positives = 119/181 (65%), Gaps = 4/181 (2%)

Query: 1   MGLTFTKLF--SRLF--AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV 56
           MG +       S L     +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI 60

Query: 57  EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 116
              N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++L
Sbjct: 61  VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 120

Query: 117 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
           R A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL +GL+W+ + 
Sbjct: 121 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180

Query: 177 I 177
           +
Sbjct: 181 L 181

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  336 bits (863), Expect = e-120
 Identities = 149/163 (91%), Positives = 157/163 (96%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
           MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 78  WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
           WRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAA
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120

Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           EITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  333 bits (856), Expect = e-119
 Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 20/197 (10%)

Query: 1   MGLTFTKLFSRL--------FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN 52
           M   F  ++S            KK  +++ +GLD AGKTT+L+ LK   +   +PT+   
Sbjct: 1   MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60

Query: 53  VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 112
            E +    ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ 
Sbjct: 61  SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120

Query: 113 EDELRDAVLLVFANKQDLPNAMNAAEITDKLG------------LHSLRQRHWYIQSTCA 160
           ++ + +  +L+  NK D P A++   + +  G            L  L  R   +     
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180

Query: 161 TSGEGLYEGLDWLSNNI 177
              +G  EG  W++  I
Sbjct: 181 LKRQGYGEGFRWMAQYI 197

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  333 bits (855), Expect = e-119
 Identities = 75/188 (39%), Positives = 118/188 (62%), Gaps = 8/188 (4%)

Query: 1   MGLTFTKLF--SRLFA--KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVE 54
           MG +       S L     KE+ +L +GLD +GKTTI+ KLK         +PTIGF++E
Sbjct: 1   MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE 60

Query: 55  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114
             +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+DR R+V A++EL  +LN  
Sbjct: 61  KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP 120

Query: 115 EL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172
           ++  R   +L FANK DL +A+ + +++  L L +++ + W+I ++ A  GEGL EG+DW
Sbjct: 121 DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDW 180

Query: 173 LSNNIASK 180
           L + I + 
Sbjct: 181 LQDQIQTV 188

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  326 bits (838), Expect = e-114
 Identities = 154/180 (85%), Positives = 162/180 (90%)

Query: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
                      LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 149 AQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 208

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAV
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 268

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct: 269 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score =  251 bits (642), Expect = 4e-86
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 9/169 (5%)

Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---ISFTVWDVGGQ 71
             +  +L VGL  +GKT +  +L  G+   T  +I  +    +  N    S T+ D+ G 
Sbjct: 5   SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH 64

Query: 72  DKIRP-LWRHYFQNTQGLIFVVDSNDRDRVV-EARDELHRMLNEDEL--RDAVLLVFANK 127
           + +R  L   +  + + ++FVVDS    R V +  + L+++L +         LL+  NK
Sbjct: 65  ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124

Query: 128 QDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
           QD+  A +A  I  +L       R    +S   ++ +        L   
Sbjct: 125 QDIAMAKSAKLIQQQLEKELNTLRVT--RSAAPSTLDSSSTAPAQLGKK 171

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  229 bits (586), Expect = 8e-78
 Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 26/194 (13%)

Query: 8   LFSRLFAKKEMRILMVGLDAAGKTTILYKLK-------LGEIVT----TIPTIGFN---- 52
             +    +   +I+  G   +GKTT L  +         GE+V+       T+ F+    
Sbjct: 5   TINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPL 64

Query: 53  -VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML 111
            +  V+     F ++ V GQ       +   +   G++FV DS   +R+    + +  M 
Sbjct: 65  DIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMR 123

Query: 112 NE-----DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
                    L D  +++  NK+DLP+A+    +   +         + +    AT G+G+
Sbjct: 124 ENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG----KFPVLEAVATEGKGV 179

Query: 167 YEGLDWLSNNIASK 180
           +E L  +S  + ++
Sbjct: 180 FETLKEVSRLVLAR 193

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score =  218 bits (557), Expect = 4e-73
 Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 11/177 (6%)

Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
             +  I++ G   +GKT++L  L    +  T+ +    +   +Y     T+ D  G  K+
Sbjct: 10  SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKL 68

Query: 75  RPLWRHYFQN----TQGLIFVVDS-NDRDRVVEARDELHRMLNEDELRDAV---LLVFAN 126
           R     Y +      +GLIF+VDS  D  ++    + L  +L+  E        +L+  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 127 KQDLPNAMNAAEITDKLG--LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181
           K +L  A   ++I D L   +  + +R     +             + L    ++  
Sbjct: 129 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDG 185

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score =  214 bits (548), Expect = 4e-72
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 11/152 (7%)

Query: 10  SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
           S      +  I++ G   +GKT++L  L    +  T+ +    +   +Y     T+ D  
Sbjct: 41  SGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFP 99

Query: 70  GQDKIRPLWRHYFQN----TQGLIFVVDS-NDRDRVVEARDELHRMLNEDELRDAV---L 121
           G  K+R     Y +      +GLIF+VDS  D  ++    + L  +L+  E        +
Sbjct: 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 159

Query: 122 LVFANKQDLPNAMNAAEITDKLG--LHSLRQR 151
           L+  NK +L  A   ++I D L   +  + +R
Sbjct: 160 LIACNKSELFTARPPSKIKDALESEIQKVIER 191

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score =  186 bits (473), Expect = 3e-60
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 5/127 (3%)

Query: 58  YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNED- 114
           +   +      G +  + P  +   +   G I+V ++    R    +    +  M +   
Sbjct: 99  FSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAF 158

Query: 115 -ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
                 +L++    Q     M    +  +L L+ L    W +Q T A +  G   G++W+
Sbjct: 159 GSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWI 217

Query: 174 SNNIASK 180
              + SK
Sbjct: 218 LEEVESK 224

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score =  171 bits (434), Expect = 2e-53
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 67  DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNED--ELRDAVLL 122
             G +  + P  +   +   G I+V ++    R    +    +  M +         +L+
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252

Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           +    Q     M    +  +L L+ L    W +Q T A +  G   G++W+   + SK
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score =  159 bits (404), Expect = 3e-50
 Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 20/164 (12%)

Query: 10  SRLFAKKEMRILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYK-NISFT 64
           +  F   + RIL++GL  +GK++I     +K+   E +    T     + +     ++F 
Sbjct: 13  NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQ 72

Query: 65  VWDVGGQDKIRPLW---RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDA 119
           +WD  GQ             F+ T  LI+V+D+ D     EA   LH  +++      D 
Sbjct: 73  IWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYM--EALTRLHITVSKAYKVNPDM 130

Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
              VF +K D         ++D   + + R  H       A +G
Sbjct: 131 NFEVFIHKVDG--------LSDDHKIETQRDIHQRANDDLADAG 166

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score =  129 bits (325), Expect = 3e-37
 Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 13/137 (9%)

Query: 19  RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDK 73
           ++L++G   +GK+++           +      TI      + +  N++  +WD GGQD 
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64

Query: 74  -----IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFAN 126
                      H FQ  Q LI V D    +  ++  +   + L +      DA + V  +
Sbjct: 65  FMENYFTKQKDHIFQMVQVLIHVFDVESTEV-LKDIEIFAKALKQLRKYSPDAKIFVLLH 123

Query: 127 KQDLPNAMNAAEITDKL 143
           K DL       E+   +
Sbjct: 124 KMDLVQLDKREELFQIM 140

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 87.8 bits (217), Expect = 2e-21
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 12/120 (10%)

Query: 20  ILMVGLDAAGKTTIL----YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
           +L++G+   GK++I     + ++  + +    T   ++E      I   V ++ GQ    
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNYF 60

Query: 76  PLW---RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDL 130
                    F++   L++V+DS D      A   L  ++           + V  +K D 
Sbjct: 61  EPSYDSERLFKSVGALVYVIDSQDEYI--NAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 31/185 (16%), Positives = 71/185 (38%), Gaps = 30/185 (16%)

Query: 17  EMRILMVGLDAAGKTTILYKLKLGE---IVTTIPTIG--FNVETVEYKN-----ISFTVW 66
            M++++VG   +GKTT+L +L   +   +     T+G       ++ ++     +   VW
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 67  DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVF 124
           D  G+++      H+       + V D +     V   D +   L   + R   + +++ 
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEV---DAMKPWLFNIKARASSSPVILV 118

Query: 125 ANKQDLPN--------AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
               D+ +        +    E+ +K G  ++R  H+          + L +    L   
Sbjct: 119 GTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHF---VNATEESDALAK----LRKT 171

Query: 177 IASKA 181
           I +++
Sbjct: 172 IINES 176

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 6/155 (3%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGG 70
             ++++++G  A GK++I+ +    +      PTIG  F  + V      + F +WD  G
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
           Q++   L   Y++N Q  + V D       ++AR  +   L+E   +D ++ +  NK D 
Sbjct: 62  QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDX 120

Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165
                  ++  + G     ++      T A +GE 
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 10/99 (10%)

Query: 42  IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV 101
           +   + T G      +   ++F ++DVGGQ   R  W   F +   +IFVV S+  + V+
Sbjct: 198 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVI 257

Query: 102 EARDELHRM----------LNEDELRDAVLLVFANKQDL 130
              ++ +R+           N   LR   +++F NKQDL
Sbjct: 258 REDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 13/121 (10%)

Query: 20  ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVE--YKNISFTVWDVGGQDKI 74
           +++VG    GKTT + +   GE     + T+G   +          I F VWD  GQ+K 
Sbjct: 18  LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77

Query: 75  RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
             L   Y+   Q  I + D   R     V     +L R+       +  +++  NK D+ 
Sbjct: 78  GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIK 132

Query: 132 N 132
           +
Sbjct: 133 D 133

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score = 54.0 bits (129), Expect = 4e-09
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
              PT G +    E KN+ F + DVGGQ   R  W   F +   ++F+V S++ D+V+  
Sbjct: 184 ARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLME 243

Query: 104 RDELHRM----------LNEDELRDAVLLVFANKQDL 130
             + +R+          +N     +  +++F NK DL
Sbjct: 244 DRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score = 53.2 bits (127), Expect = 6e-09
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 42  IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV 101
           + T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D D V+
Sbjct: 174 LRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVL 233

Query: 102 EARDELHRML----------NEDELRDAVLLVFANKQDL 130
              +E++RM           N     D  +++F NK+DL
Sbjct: 234 AEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 18/140 (12%)

Query: 20  ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG---FNVETVEY--KNISFTVWDVGGQDK 73
           I ++G    GKTT + ++  G        T+G     V  ++     I F VWD  GQ+K
Sbjct: 14  ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
              L   Y+    G I   D   R     +     E   ++      +A ++V ANK D+
Sbjct: 74  KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDI 129

Query: 131 PN-----AMNAAEITDKLGL 145
            N          E+      
Sbjct: 130 KNRQKISKKLVMEVLKGKNY 149

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 21/164 (12%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGE-------------IVTTIPTIGFNVETVEYKNIS 62
           +E+++ ++G   AGKT++L +L                 +    P I       E K   
Sbjct: 40  QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99

Query: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
           F  WD GGQ+ +    + +   +   + ++DS            + +   +      V++
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGK----SPVIV 155

Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
           V  NK D   +     I  K                   +G+G+
Sbjct: 156 V-MNKIDENPSY---NIEQKKINERFPAIENRFHRISCKNGDGV 195

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 10/124 (8%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGGQ 71
           +E +++++G    GK+ +  +   G  +    PTI  F  + +E  +      + D  G 
Sbjct: 2   REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
           ++   +   Y +N QG I V    ++     +   RD++ R+   +++   V+LV  NK 
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKV--PVILV-GNKV 118

Query: 129 DLPN 132
           DL +
Sbjct: 119 DLES 122

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 10/124 (8%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ 71
            E ++++VG    GK+ +  +L     V    PTI  +      ++ +     + D  GQ
Sbjct: 20  TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 79

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
           ++   +   Y +  +G + V   N+      +   R+++ R+ + D   D  +++  NK 
Sbjct: 80  EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSD---DVPMVLVGNKC 136

Query: 129 DLPN 132
           DLP 
Sbjct: 137 DLPT 140

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 10/126 (7%)

Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
              E ++++VG D  GK+ +  +L     V    PTI  +      ++ +     + D  
Sbjct: 1   GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60

Query: 70  GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
           GQ++   +   Y +  +G + V   N+    + +   R+++ R+ + +++   ++LV  N
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDV--PMVLV-GN 117

Query: 127 KQDLPN 132
           K DLP+
Sbjct: 118 KCDLPS 123

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            + +++G    GK+ +L +            TIG  F    V    K I   +WD  GQ+
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
             R + R Y++   G + V D   R   + +    ++  +  +     + V+++  NK D
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSD 137

Query: 130 LPN 132
           L +
Sbjct: 138 LES 140

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 49.8 bits (120), Expect = 4e-08
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGG 70
            +  ++++VG    GK+ +  +      V+   PTI     +      I     + D  G
Sbjct: 7   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 66

Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
           Q++   +   Y +   G + V   NDR   + V +   ++ R+ + D   D  +++  NK
Sbjct: 67  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD---DFPVVLVGNK 123

Query: 128 QDLPN 132
            DL +
Sbjct: 124 ADLES 128

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 12/121 (9%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
           ++ +G  + GKT+++ +        T   TIG  F  +T+    + +   +WD  G ++ 
Sbjct: 19  LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERF 78

Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
           R L   Y +++   + V D  + +   +     D++          D ++++  NK DL 
Sbjct: 79  RSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLA 134

Query: 132 N 132
           +
Sbjct: 135 D 135

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 49.1 bits (118), Expect = 6e-08
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 12/122 (9%)

Query: 19  RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
           +IL++G    GK+ +L +    +   + I TIG  F ++TV+   K +   +WD  GQ++
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
            R +   Y++   G+I V D  D      + +    ++   N+    +A LL+  NK D+
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDM 120

Query: 131 PN 132
             
Sbjct: 121 ET 122

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 48.8 bits (117), Expect = 9e-08
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 12/122 (9%)

Query: 19  RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
           ++L++G  + GKT+ L++          + T+G  F V+TV    K I   +WD  GQ++
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
            R +   Y++   G + + D  ++     V +   ++     +    +A +++  NK DL
Sbjct: 84  YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD----NAQVILVGNKCDL 139

Query: 131 PN 132
            +
Sbjct: 140 ED 141

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 48.8 bits (117), Expect = 9e-08
 Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 19  RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
           +IL++G  + GKT+ L++          + T+G  F V+T+    K I   +WD  G ++
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
            R +   Y++   G I + D  +    + V +   ++     +    +A +L+  NK D+
Sbjct: 70  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKCDM 125

Query: 131 PN 132
            +
Sbjct: 126 ED 127

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 48.7 bits (117), Expect = 9e-08
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 10/124 (8%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGGQ 71
              ++++VG    GK+ +  +      V    PTI    ++  E  N      V D  GQ
Sbjct: 17  PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ 76

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
           ++   +   Y +   G + V    D+   + V      + R+ + +     ++LV ANK 
Sbjct: 77  EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF--PMILV-ANKV 133

Query: 129 DLPN 132
           DL +
Sbjct: 134 DLMH 137

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            +++++G    GKT +L +    E    +  TIG  F+  TV      +   +WD  G +
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 129
           + R +   Y++   G + V D               EL+           V+++  NK D
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA----TIVVMLVGNKSD 141

Query: 130 LPN 132
           L  
Sbjct: 142 LSQ 144

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            +++++G    GK+ +L +    E  + +  TIG  F   +++   K I   +WD  GQ+
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           + R +   Y++   G + V D       + V     EL    +     + V+++  NK D
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSD 121

Query: 130 LPN 132
           L +
Sbjct: 122 LRH 124

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 11/125 (8%)

Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNISFT--VWDVG 69
             + R+++ G    GK++++ +   G    T IPTI   +  + +       T  + D  
Sbjct: 6   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTT 64

Query: 70  GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
           G  +   + R         I V     +   + +      + ++    E  D  +++  N
Sbjct: 65  GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE--DIPVMLVGN 122

Query: 127 KQDLP 131
           K D  
Sbjct: 123 KCDET 127

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 12/121 (9%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
           +L++G  + GKT+ L++          + T+G  F V+TV    K +   +WD  GQ++ 
Sbjct: 26  LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY 85

Query: 75  RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           R +   Y++   G I + D  +    + V +   ++     +    +A +++  NK D+ 
Sbjct: 86  RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD----NAQVILVGNKCDME 141

Query: 132 N 132
            
Sbjct: 142 E 142

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
           M+IL++G    GK+ +L +    +   + I TIG  F ++TV+   K +   +WD  GQ+
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           + R +   Y++   G+I V D  D      + +    ++   N+    +A LL+  NK D
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSD 136

Query: 130 LPN 132
           +  
Sbjct: 137 MET 139

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 33/151 (21%)

Query: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
             +PT G      + +++ F + DVGGQ   R  W H F+N   ++F+V  ++ D+V+  
Sbjct: 150 VRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 209

Query: 104 RDELHRM----------LNEDELRDAVLLVFANKQDL--------------------PNA 133
            D  +RM          +     +++ +++F NK+DL                       
Sbjct: 210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRD 269

Query: 134 MNAAE--ITDK-LGLHSLRQRHWYIQSTCAT 161
             AA   I    + L+    +  Y   TCAT
Sbjct: 270 AQAAREFILKMFVDLNPDSDKIIYSHFTCAT 300

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            ++L++G    GK+ +L +        + I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           + R +   Y++   G+I V D  D+   + V +   E+ R  +E    +   L+  NK D
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCD 149

Query: 130 LPN 132
           L  
Sbjct: 150 LTT 152

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
           +IL++G    GK+++L +            TIG  F V+T+          +WD  GQ++
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
            R L   Y++  QG+I V D   R    ++    +EL      +   D V ++  NK D 
Sbjct: 77  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN---DIVNMLVGNKIDK 133

Query: 131 PN 132
            N
Sbjct: 134 EN 135

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            ++L++G    GKT +L++        T I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           + R +   Y++   G++ V D  +    D +      +    +     D   ++  NK D
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCD 124

Query: 130 LPN 132
           + +
Sbjct: 125 VND 127

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            + L++G    GK+ +L++    +    +  TIG  F    V    K +   +WD  GQ+
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           + R + R Y++   G + V D   R   + +     +   + +     + V+++  NK+D
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKKD 141

Query: 130 LPN 132
           L  
Sbjct: 142 LDP 144

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 12/128 (9%)

Query: 19  RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
           +I++ G  A GK++ L +L   E       T+G  F ++T+    +     +WD  GQ++
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
            R + + YF+   G++ + D         + E  D +    +E       +++  NK D+
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKADI 145

Query: 131 PNAMNAAE 138
            +      
Sbjct: 146 RDTAATEG 153

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            + +++G    GK+ +L++    + +     TIG  F    +E   + I   +WD  GQ+
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           + R + R Y++   G + V D   R   + +     +   + N     + V+++  NK D
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKAD 131

Query: 130 LPN 132
           L  
Sbjct: 132 LEA 134

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 13/124 (10%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQ 71
            ++++VG    GKT +L + K G     T I T+G  F  + ++     +   +WD  GQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
           ++ R +   Y+++   L+ + D  ++   D +     E+H         D  L++  NK 
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNKV 126

Query: 129 DLPN 132
           D  +
Sbjct: 127 DSAH 130

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 12/121 (9%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
           ++++G    GKT+++ +    +     I T+G  F  + +    K ++  +WD  GQ++ 
Sbjct: 9   VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68

Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
             L   Y++++ G I V D  D D   + +    EL +ML      +  L +  NK DL 
Sbjct: 69  HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLE 124

Query: 132 N 132
            
Sbjct: 125 K 125

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            +I+++G    GKT ++ +   G        TIG  F ++TVE   + +   +WD  GQ+
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           + R + + Y+++   LI   D         + E   E+ +  +       + ++  NK D
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKID 142

Query: 130 LPN 132
           L  
Sbjct: 143 LAE 145

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVG 69
            K  +I ++G  + GK+++  +   G+ V +  PTI   F  + +    +     + D  
Sbjct: 4   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTA 62

Query: 70  GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
           GQD+     + Y  +  G I V         + +     +L  M+ + ++   ++LV  N
Sbjct: 63  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI--PIMLV-GN 119

Query: 127 KQDLPN 132
           K+DL  
Sbjct: 120 KKDLHM 125

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            +I+++G    GK+ +L +    E  + +  TIG  F   T+E   K I   +WD  GQ+
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           + R +   Y++   G + V D +     +       EL    ++    +  + +  NK D
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD----NVAVGLIGNKSD 129

Query: 130 LPN 132
           L +
Sbjct: 130 LAH 132

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            ++L++G    GK+ +L +        + I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           + R +   Y++   G+I V D  D+   + V +   E+ R  +E    +   L+  NK D
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCD 132

Query: 130 LPN 132
           L  
Sbjct: 133 LTT 135

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 46/201 (22%)

Query: 5   FTKLFSRLF-AKKEMRILMVGLDAAGKTT-ILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
           + KL   L   +    +L+ G+  +GKT   L      ++   +    F +         
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD---FKI--------- 184

Query: 63  FTVW-DVGGQDK----IRPLWRHYFQNTQGLIFVVD--SNDRDRVVEARDELHRMLNEDE 115
           F  W ++   +     +  L +  +Q         D  SN + R+   + EL R+L    
Sbjct: 185 F--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 116 LRDAVLLVFANKQDLPNAMNA-------------AEITDKLGLHSLRQRHWYIQSTCATS 162
             +  LLV  N Q+   A NA              ++TD L   +    H  +       
Sbjct: 243 YENC-LLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLS--AATTTHISLDH----H 294

Query: 163 GEGLY--EGLDWLSNNIASKA 181
              L   E    L   +  + 
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRP 315

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 20  ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
           ++++G    GK++++ +    +       TIG  F  + +E     ++  +WD  GQ++ 
Sbjct: 10  VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 69

Query: 75  RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           R L   +++ +   +     +D      +   + E     +  E      ++  NK D+ 
Sbjct: 70  RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129

Query: 132 N 132
            
Sbjct: 130 E 130

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            +++++G    GK+ +L +    E  + +  TIG  F   +++   K I   +WD  G +
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 129
           + R +   Y++   G + V D               EL    +     + V+++  NK D
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSD 145

Query: 130 LPN 132
           L +
Sbjct: 146 LRH 148

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
           ++++++G    GKT+++ +            T+G  F ++TVE   K I   +WD  GQ+
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           +   +   Y+++ +G+I V D   +   D + +    + +  +E    DA LL+  NK D
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKLD 142

Query: 130 LPN 132
              
Sbjct: 143 CET 145

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            +I+++G    GKT + Y+   G     T  TIG  F    V+   + I   +WD  GQ+
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 73  KIRP-LWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
           + R  + +HY++N   ++FV D  +      +    +E  + L  +   D   ++  NK 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN---DIPRILVGNKC 137

Query: 129 DLPN 132
           DL +
Sbjct: 138 DLRS 141

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 11/148 (7%)

Query: 6   TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNI 61
           + + +  F  + ++ ++VG  A GKT +L            IPT+  N      V+ K +
Sbjct: 19  SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV 78

Query: 62  SFTVWDVGGQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118
           +  +WD  GQ   D++RPL    +  T   +              R + +  +       
Sbjct: 79  NLGLWDTAGQEDYDRLRPL---SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT 135

Query: 119 AVLLVFANKQDLPNAMNAAEITDKLGLH 146
            ++LV   K DL +  +  E   +  L 
Sbjct: 136 PIILV-GTKLDLRDDKDTIEKLKEKKLT 162

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            ++L++G    GK+ +L +          I TIG  F ++TVE   K +   +WD  GQ+
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           + R +   Y++ + G+I V D  D+   + V     E+ R          + L+  NK D
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCD 124

Query: 130 LPN 132
           L +
Sbjct: 125 LKD 127

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 12/121 (9%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
           ++ +G  + GKT+++ +        T   TIG  F  +T+    + +   +WD  GQ++ 
Sbjct: 17  LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76

Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
           R L   Y +++   + V D  + +   +     D++          D ++++  NK DL 
Sbjct: 77  RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTDLS 132

Query: 132 N 132
           +
Sbjct: 133 D 133

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 46.7 bits (112), Expect = 4e-07
 Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 10/124 (8%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FN-VETVEYKNISFTVWDVGGQ 71
            E ++++VG    GK+ +  +L     V    PTI   +     ++ +     + D  GQ
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
           ++   +   Y +  +G + V   N+    + + + R+++ R+ + D++   ++LV  NK 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDV--PMVLV-GNKS 118

Query: 129 DLPN 132
           DL  
Sbjct: 119 DLAA 122

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 20  ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY---KNISFTVWDVGGQDK 73
           ++++G    GKT+++++    +       TIG  F  + V     K  +  VWD  GQ++
Sbjct: 11  VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 70

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
            + L   +++     + V D  +    + +   RDE     N +       ++  NK D 
Sbjct: 71  FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 130

Query: 131 PNA 133
             +
Sbjct: 131 EES 133

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 46.7 bits (112), Expect = 4e-07
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNISFT--VWDVGGQ 71
            + R+ + G    GK++++ +   G    + IPT+     + +       T  + D  G 
Sbjct: 2   NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
            +   + R         I V     R   + +    +++  +  + E     +++  NK 
Sbjct: 62  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE--SIPIMLVGNKC 119

Query: 129 DLPN 132
           D   
Sbjct: 120 DESP 123

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 46.8 bits (112), Expect = 5e-07
 Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            + L++G    GK+ +L++    +    +  TIG  F  + +    K +   +WD  GQ+
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           + R + R Y++   G + V D   R   + +     +   + ++    + V+++  NK+D
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKD 126

Query: 130 LPN 132
           L  
Sbjct: 127 LDA 129

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 46.8 bits (112), Expect = 5e-07
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 12/121 (9%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
           + ++G    GK++I+ +           PTIG  F  +TV    +   F +WD  GQ++ 
Sbjct: 26  VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF 85

Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
             L   Y++ +   + V D   +D     +    EL     E    + V+ +  NK DL 
Sbjct: 86  HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE----NIVMAIAGNKCDLS 141

Query: 132 N 132
           +
Sbjct: 142 D 142

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 12/121 (9%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
           ++++G  A GK++++ +   G+       TIG  F  +TV      + F +WD  GQ++ 
Sbjct: 9   LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68

Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
             L   Y++  Q  I V D  + +    A+    EL R  +     + V+ +  NK DL 
Sbjct: 69  HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADLA 124

Query: 132 N 132
           N
Sbjct: 125 N 125

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 46.3 bits (111), Expect = 5e-07
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGG 70
           +E+++ ++G    GK++I+++           PTIG  F  +TV+Y  +   F +WD  G
Sbjct: 5   RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64

Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
            ++ R L   Y++ +   I V D    +     +    EL +          V+ +  NK
Sbjct: 65  LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNK 120

Query: 128 QDLPN 132
            DL +
Sbjct: 121 CDLTD 125

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 12/126 (9%)

Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVE-TVEYKNISFTVWDVGG 70
           +  E+R+ ++G   +GK++++++   G       T    +  E  V+ +     + +  G
Sbjct: 4   SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63

Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV-FAN 126
               +     +      +IFV    D      V     +L  +  E     A+ LV   +
Sbjct: 64  APDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118

Query: 127 KQDLPN 132
           +    +
Sbjct: 119 RISASS 124

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 46.4 bits (111), Expect = 6e-07
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 9/124 (7%)

Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
              E+ + ++G   AGK+ +  K      ++   P +       ETV+++ +   V D  
Sbjct: 18  GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTA 77

Query: 70  GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
             D  R   R Y       + V   + R   D      + L     E +     LL+  N
Sbjct: 78  DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLL-GN 135

Query: 127 KQDL 130
           K D+
Sbjct: 136 KLDM 139

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 8/121 (6%)

Query: 20  ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
           ++++G    GKT+++ +    +       TIG  F  + V    + ++  +WD  GQ++ 
Sbjct: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70

Query: 75  RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           + L   +++     + V D         +   RDE     +  +  +   +V  NK DL 
Sbjct: 71  QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130

Query: 132 N 132
           N
Sbjct: 131 N 131

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 46.0 bits (110), Expect = 7e-07
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 11/122 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            ++L++G    GK+++L +        + I TIG  F + TVE   + +   +WD  GQ+
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDL 130
           + R +   Y++ T G+I V D        E+   + R L+E      D   ++  NK D 
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSA----ESFVNVKRWLHEINQNCDDVCRILVGNKNDD 125

Query: 131 PN 132
           P 
Sbjct: 126 PE 127

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 45.9 bits (110), Expect = 7e-07
 Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 12/125 (9%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNISFT--VWDVGG 70
           +E +++++G    GK+ +  +   G  V    PTI   +  + VE         + D  G
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAG 60

Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
            ++   +   Y +N QG   V     +   + + + R+++ R+ + +++   ++LV  NK
Sbjct: 61  TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDV--PMILV-GNK 117

Query: 128 QDLPN 132
            DL +
Sbjct: 118 CDLED 122

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 13/125 (10%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ 71
            E+++ + G    GK+ ++ +      +    PT+        T++ + +S  + D  GQ
Sbjct: 27  AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ 86

Query: 72  DKIRPLWR-HYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
           +    + R  + +  +G + V D  DR   + V+  ++ L  +     +   ++LV  NK
Sbjct: 87  E--DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV--TLILV-GNK 141

Query: 128 QDLPN 132
            DL +
Sbjct: 142 ADLDH 146

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 12/123 (9%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            ++++VG  + GKT ++ + K G        TIG  F ++T+E   K +   +WD  GQ+
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           + R + + Y+++  G I   D   R     V    +++ +        + V L+  NK D
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS----NIVQLLIGNKSD 145

Query: 130 LPN 132
           L  
Sbjct: 146 LSE 148

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 12/91 (13%)

Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGG 70
           KK ++I++VG  A GKT +L     GEI T  +PT+  N    ++Y  +     +WD  G
Sbjct: 21  KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80

Query: 71  Q---DKIRPLWRHYFQNTQGLI--FVVDSND 96
           Q   D++RPL    + ++  ++  F V++  
Sbjct: 81  QEEYDRLRPL---SYADSDVVLLCFAVNNRT 108

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 12/123 (9%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGG 70
           +  +++++G    GKT++ ++   GE      PT+   ++ + V          + D  G
Sbjct: 23  RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAG 81

Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
           QD+   L   +     G + V           +     +LH    +  +   V+LV  NK
Sbjct: 82  QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV--PVVLV-GNK 138

Query: 128 QDL 130
            DL
Sbjct: 139 ADL 141

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 20/129 (15%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--------KNISFTVW 66
              +++MVG    GK+ +  +    E V    PT         Y        + +   + 
Sbjct: 17  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-----DSYRKKVVLDGEEVQIDIL 71

Query: 67  DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV 123
           D  GQ+    +  +YF++ +G + V    +        + R+++ R+  ++ +    LLV
Sbjct: 72  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLV 129

Query: 124 FANKQDLPN 132
             NK DL +
Sbjct: 130 -GNKSDLED 137

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 10/123 (8%)

Query: 19  RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY---KNISFTVWDVGGQD 72
           +I+++G  A+GKT++               TIG  F +  +      N++  +WD+GGQ 
Sbjct: 8   KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
               +   Y    QG++ V D  +    + + +    + ++  E E +  V LV  NK D
Sbjct: 68  IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV-GNKID 126

Query: 130 LPN 132
           L +
Sbjct: 127 LEH 129

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 20/129 (15%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--------KNISFTVW 66
              +++MVG    GK+ +  +    E V    PT         Y        + +   + 
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-----DSYRKKVVLDGEEVQIDIL 57

Query: 67  DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV 123
           D  GQ+    +  +YF++ +G + V    +        + R+++ R+  ++ +    LLV
Sbjct: 58  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLV 115

Query: 124 FANKQDLPN 132
             NK DL +
Sbjct: 116 -GNKSDLED 123

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 20/129 (15%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--------KNISFTVW 66
              +++MVG    GK+ +  +    E V    PT         Y        + +   + 
Sbjct: 13  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-----DSYRKKVVLDGEEVQIDIL 67

Query: 67  DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLV 123
           D  GQ+    +  +YF++ +G + V    +        + R+++ R+  ++   +   L+
Sbjct: 68  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE---NVPFLL 124

Query: 124 FANKQDLPN 132
             NK DL +
Sbjct: 125 VGNKSDLED 133

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 21/129 (16%)

Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
           A + ++ + VG  A GKT +L         T  +PT+  N      V    ++  +WD  
Sbjct: 5   ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTA 64

Query: 70  GQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-----VL 121
           GQ   +++RPL    ++     I       +        +        EL+       ++
Sbjct: 65  GQEDYNRLRPL---SYRGADVFILAFSLISKASYENVSKKWIP-----ELKHYAPGVPIV 116

Query: 122 LVFANKQDL 130
           LV   K DL
Sbjct: 117 LV-GTKLDL 124

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 12/121 (9%)

Query: 20  ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
           ++++G   AGK++++ +    + +     TIG  F  +T+      + F +WD  GQ++ 
Sbjct: 15  LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74

Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLP 131
             L   Y++     I V D  ++     A+    EL    N     + V+ +  NK DL 
Sbjct: 75  HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDLL 130

Query: 132 N 132
           +
Sbjct: 131 D 131

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVG 69
             K ++ + VG  A GKT +L      +  T  IPT+  N    V    + ++  +WD  
Sbjct: 6   VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTA 65

Query: 70  GQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
           GQ    ++RPL    ++     +       +        +    L        ++LV   
Sbjct: 66  GQEDYSRLRPL---SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLV-GT 121

Query: 127 KQDLPN 132
           K DL +
Sbjct: 122 KLDLRD 127

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 19/123 (15%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY--------KNISFTVWDVGG 70
           ++L++G    GK+ +       E        G       Y        +  S  V+D+  
Sbjct: 4   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-----HTYDRSIVVDGEEASLMVYDIWE 58

Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANK 127
           QD  R L  H        + V    D+   ++  E R +L R    D++   ++LV  NK
Sbjct: 59  QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDV--PIILV-GNK 115

Query: 128 QDL 130
            DL
Sbjct: 116 SDL 118

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 12/123 (9%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
           ++++VG    GK+T+       +                 +    + ++  V+D+  Q  
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 74  IRPLWR-HYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
                + H  Q     + V    DR    +V E    L       +L   V+LV  NK D
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL--PVILV-GNKSD 120

Query: 130 LPN 132
           L  
Sbjct: 121 LAR 123

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 12/87 (13%)

Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ--- 71
          +I++VG    GKT +L+           +PT+  N      ++ + I  ++WD  G    
Sbjct: 9  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68

Query: 72 DKIRPLWRHYFQNTQGLI--FVVDSND 96
          D +RPL    + ++  ++  F +   +
Sbjct: 69 DNVRPL---SYPDSDAVLICFDISRPE 92

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 13/121 (10%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
           +++VG  A GK++++ +   G        TIG  F    ++   +++   +WD  GQ++ 
Sbjct: 8   MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67

Query: 75  RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
             + + Y++  Q  + V  + DR   + +   R+++   +      D    +  NK DL 
Sbjct: 68  DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLL 122

Query: 132 N 132
           +
Sbjct: 123 D 123

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 14/127 (11%)

Query: 13  FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFT--VWDVG 69
           F   E+++ +VG  ++GK+ ++++   G  V    P  G   + +     S+   + D G
Sbjct: 16  FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEG 75

Query: 70  GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
           G  +++     +      ++FV    D      V      L    N  E+   ++LV   
Sbjct: 76  GPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEV--PMVLV-GT 127

Query: 127 KQDLPNA 133
           +  +  A
Sbjct: 128 QDAISAA 134

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 10  SRLFAKKEMRI--LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISF 63
             L+ +  +R   ++VG  A GKT +L      E     +PT+  N      V+ K +  
Sbjct: 16  ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVEL 75

Query: 64  TVWDVGGQ---DKIRPLWRHYFQNTQGLIFVVDSNDRD 98
            +WD  GQ   D++RPL    + +T  ++     +  D
Sbjct: 76  ALWDTAGQEDYDRLRPL---SYPDTDVILMCFSVDSPD 110

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 11/105 (10%)

Query: 37  LKLGEIVTTIPTIGFNVETV-EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95
           L      T +  I F+     +     + ++DVGGQ   R  W H F+    +IF    +
Sbjct: 158 LYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217

Query: 96  DRDRVVEARDELHRM----------LNEDELRDAVLLVFANKQDL 130
           + D+ +   ++ +RM          L +        ++F NK D+
Sbjct: 218 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 12/87 (13%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ--- 71
           +I++VG    GKT +L+           +PT+  N      ++ + I  ++WD  G    
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89

Query: 72  DKIRPLWRHYFQNTQGLI--FVVDSND 96
           D +RPL    + ++  ++  F +   +
Sbjct: 90  DNVRPL---SYPDSDAVLICFDISRPE 113

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 12/86 (13%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ---D 72
           +++VG    GKT +L  L       T +PT+  N       E + +  ++WD  G    D
Sbjct: 30  LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD 89

Query: 73  KIRPLWRHYFQNTQGLI--FVVDSND 96
            +RPL    + ++  ++  F +   +
Sbjct: 90  NVRPL---CYSDSDAVLLCFDISRPE 112

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 21/132 (15%)

Query: 19  RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY------------KNISF 63
           + L +G    GKT++LY+   G+     I T+G  F  + V Y            + I  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 64  TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAV 120
            +WD  G ++ R L   +F++  G + + D  +      V     +L      +   +  
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE---NPD 129

Query: 121 LLVFANKQDLPN 132
           +++  NK DL +
Sbjct: 130 IVLCGNKSDLED 141

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 21/141 (14%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ-- 71
           ++ ++VG  A GKT +L            +PT+  +     TV  K     ++D  GQ  
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78

Query: 72  -DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-----AVLLVFA 125
            D++RPL    +  T   +      +       ++E        EL++       LL+  
Sbjct: 79  YDRLRPL---SYPMTDVFLICFSVVNPASFQNVKEEWVP-----ELKEYAPNVPFLLI-G 129

Query: 126 NKQDLPNAMNAAEITDKLGLH 146
            + DL +        + +   
Sbjct: 130 TQIDLRDDPKTLARLNDMKEK 150

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 29/149 (19%)

Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVG 69
             + ++ ++VG  A GKT+++         T  IPT   N   V +V+ + +   + D  
Sbjct: 17  EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTA 76

Query: 70  GQ---DKIRPLWRHYFQNTQGLI--FVVDSNDRDRVVEARDELHRMLN--EDELRDA--- 119
           GQ   DK+RPL    + NT   +  F V S               +      E+R     
Sbjct: 77  GQDEFDKLRPL---CYTNTDIFLLCFSVVS---------PSSFQNVSEKWVPEIRCHCPK 124

Query: 120 --VLLVFANKQDLPNAMNAAEITDKLGLH 146
             ++LV   + DL   +      DK    
Sbjct: 125 APIILV-GTQSDLREDVKVLIELDKCKEK 152

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQ---D 72
           +++VG  A GKT +L      +     +PT+  N      V+ K +   +WD  GQ   D
Sbjct: 28  LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD 87

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           ++RPL    + +T  ++     +  D +    ++    +        ++LV  NK+DL  
Sbjct: 88  RLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKDLRQ 143

Query: 133 AMNAAEITDKLGLH 146
             +      K+   
Sbjct: 144 DEHTRRELAKMKQE 157

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 11/122 (9%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ 71
           + +++++VG    GKT++L     G    +  PT+    +  ++   K +   +WD  GQ
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92

Query: 72  ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
              D++RPL   ++ +   L+   D    +      +  +  +N    +  +++V   K 
Sbjct: 93  DDYDRLRPL---FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVV-GCKT 148

Query: 129 DL 130
           DL
Sbjct: 149 DL 150

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 21/145 (14%)

Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVG 69
           + + ++ ++VG  A GKT +L                F        V+ K ++  +WD  
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 70  GQ---DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-----VL 121
           GQ   D++RPL    +  T   +              R + +      E+R       ++
Sbjct: 62  GQEDYDRLRPL---SYPQTDVSLICFSLVSPASFENVRAKWYP-----EVRHHCPNTPII 113

Query: 122 LVFANKQDLPNAMNAAEITDKLGLH 146
           LV   K DL +  +  E   +  L 
Sbjct: 114 LV-GTKLDLRDDKDTIEKLKEKKLT 137

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 21/133 (15%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEYKN------------IS 62
           +++L +G    GKTT LY+    +     I T+G  F  + V Y              + 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDA 119
             +WD  GQ++ R L   +F++  G + + D   +     V     +L      +   + 
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE---NP 142

Query: 120 VLLVFANKQDLPN 132
            +++  NK DLP+
Sbjct: 143 DIVLIGNKADLPD 155

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 19  RILMVGLDAAGKTTIL--YKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVW--DVG 69
           ++ +VG    GK+ ++  +  K  + +     T G    V  V      +S  ++  D  
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81

Query: 70  GQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFAN 126
           G D  +     Y+      I V D +     +      + L     + E     +LV AN
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV-AN 140

Query: 127 KQDLPN 132
           K DLP 
Sbjct: 141 KTDLPP 146

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 21/168 (12%)

Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNISFTVWDVGG- 70
            +   +++ G    GK+T+L  L   +  + + P  T G NV   E     + + D  G 
Sbjct: 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGL 224

Query: 71  -----QDKIRPLWRHYFQN----TQGLIFVVD-SNDRDRVVEARDELHRMLNEDELRDAV 120
                 ++     +            +I++ D S      +E +  L   ++  E +D  
Sbjct: 225 LDRPISERNEIE-KQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG-EFKDLP 282

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
            LV  NK D+ +  N   +        ++++        A  G G+  
Sbjct: 283 FLVVINKIDVADEENIKRLEKF-----VKEKGLNPIKISALKGTGIDL 325

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	100.0
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	100.0
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	100.0
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	100.0
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	100.0
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	100.0
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	100.0
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	100.0
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	100.0
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	100.0
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	100.0
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.98
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.98
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.98
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.97
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.97
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.97
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.97
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.97
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.97
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.97
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.97
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.97
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.97
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.97
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.97
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.97
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.97
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.97
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.97
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.97
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.97
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.97
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.97
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.97
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.97
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.97
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.97
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.97
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.97
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.97
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.97
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.97
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.97
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.97
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.97
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.97
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.97
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.97
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.97
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.97
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.97
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.97
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.97
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.97
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.97
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.97
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.97
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.97
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.97
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.97
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.97
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.97
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.97
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.97
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.96
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.96
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.96
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.96
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.96
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.92
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.95
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.92
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.92
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.92
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.91
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.91
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.91
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.89
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.89
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.89
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.89
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.89
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.88
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.88
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.88
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.87
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.87
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.87
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.87
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.87
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.87
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.86
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.86
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.86
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.86
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.85
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.85
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.85
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.85
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.84
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.84
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.84
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.83
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.83
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.83
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.82
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.81
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.81
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.81
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.81
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.8
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.78
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.76
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.75
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.75
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.72
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.72
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.71
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.71
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.7
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.7
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.69
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.68
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.68
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.64
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.64
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.62
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.62
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.62
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.61
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.61
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.6
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.57
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.51
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.48
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.34
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.28
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.05
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.04
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.03
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.98
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.98
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.94
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.94
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.91
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.89
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.84
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.73
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.71
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.55
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.44
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.41
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.33
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.26
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.18
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.11
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.06
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.96
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.91
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.91
2xxa_A	433	Signal recognition particle protein; protein trans	97.79
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.76
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.7
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.62
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.53
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.52
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.51
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.51
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.49
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.46
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.45
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.41
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.4
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.37
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.36
3end_A	307	Light-independent protochlorophyllide reductase ir	97.36
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.36
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.34
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.32
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.31
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.28
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.27
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.27
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.26
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.25
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.25
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.24
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.23
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.23
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.23
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.2
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.18
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.18
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.18
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.18
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.17
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.17
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.15
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.15
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.15
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.15
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.15
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.14
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.13
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.12
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.12
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.12
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.12
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.11
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.11
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.11
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.1
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.09
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.09
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.09
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.09
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.08
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.08
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.08
1g6h_A	257	High-affinity branched-chain amino acid transport	97.08
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.08
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.08
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.08
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.07
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.07
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.06
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.06
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.06
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.06
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.05
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.04
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.04
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.04
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.03
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.03
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.03
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.03
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.02
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.02
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.01
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.01
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.01
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.01
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.01
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.01
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.99
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.99
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.99
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.99
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.99
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.98
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.98
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.98
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.98
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.97
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.97
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.97
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.96
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.96
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.95
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.95
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.95
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.95
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.95
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.94
3bos_A	242	Putative DNA replication factor; P-loop containing	96.93
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.93
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.93
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.93
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.92
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.91
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.91
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.91
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.9
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.89
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.89
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.89
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.89
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.88
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.88
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.87
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.85
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.84
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.84
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.83
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.83
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.83
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.82
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.81
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.81
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.8
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.8
1via_A	175	Shikimate kinase; structural genomics, transferase	96.79
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.79
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.78
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.77
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.76
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.75
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.75
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.73
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.73
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.72
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.72
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.71
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.71
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.71
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.71
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.7
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.7
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.69
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.69
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.68
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.66
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.66
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.66
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.65
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.65
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.64
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.64
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.64
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.63
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.63
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.63
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.63
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.62
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.61
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.58
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.58
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.56
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.55
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.53
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.52
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.52
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.51
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.51
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.5
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.5
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.49
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.48
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.48
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.47
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.47
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.44
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.42
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.42
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.42
2og2_A	359	Putative signal recognition particle receptor; nuc	96.41
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.41
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.4
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.39
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.39
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.36
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.34
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.34
3co5_A	143	Putative two-component system transcriptional RES	96.33
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.32
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.31
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.29
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.28
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.27
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.26
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.24
2qgz_A	308	Helicase loader, putative primosome component; str	96.21
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.2
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.2
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.19
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.19
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.18
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.18
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.16
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.16
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.15
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.15
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.15
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.14
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.13
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.12
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.12
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.12
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.11
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.08
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.05
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.05
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.05
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.02
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.02
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.02
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.01
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.01
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.99
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.94
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.93
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.92
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.92
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.89
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.88
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.88
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.88
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.87
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.85
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.84
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.84
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.83
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.83
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.82
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.78
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.78
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.77
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.74
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.73
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.73
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.73
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.72
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.71
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.69
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.68
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.68
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.67
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.65
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.64
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.63
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.59
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.59
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.59
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.59
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.58

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=8.6e-38  Score=215.70  Aligned_cols=180  Identities=57%  Similarity=1.010  Sum_probs=157.7

Q ss_pred             CchhHHHHHHhhhc-ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchh
Q 030192            1 MGLTFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR   79 (181)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (181)
                      ||..|++++++++. ++.++|+++|++|+|||||++++.++.+....||.+.....+...+..+.+||+||++++...+.
T Consensus         1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   80 (183)
T 1moz_A            1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR   80 (183)
T ss_dssp             -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred             CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence            89999999999888 89999999999999999999999988887778888888888888899999999999999999999


Q ss_pred             hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcc
Q 030192           80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC  159 (181)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      .+++++|++++|+|+++++++.....|+..+.......++|+++|+||+|+.+....+++.+.+....+...+++++++|
T Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  160 (183)
T 1moz_A           81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS  160 (183)
T ss_dssp             GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence            99999999999999999999999999999888765557899999999999987767778888777766666788999999


Q ss_pred             ccCCCChHHHHHHHHHHhhhc
Q 030192          160 ATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       160 ~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      |++|.|++++++++.+.+.++
T Consensus       161 a~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          161 AIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             GGGTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhc
Confidence            999999999999999988653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.9e-38  Score=216.61  Aligned_cols=178  Identities=47%  Similarity=0.884  Sum_probs=154.5

Q ss_pred             CchhHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhh
Q 030192            1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH   80 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (181)
                      ||..|+++++ ++.++.++|+++|++|+|||||++++.++.+..+.||.+.....+...+..+.+|||||++++...+..
T Consensus         1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   79 (187)
T 1zj6_A            1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT   79 (187)
T ss_dssp             -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred             CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence            8999999988 888999999999999999999999999888777788888888888888999999999999999999999


Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      +++++|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+....++..+++++++||
T Consensus        80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa  159 (187)
T 1zj6_A           80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA  159 (187)
T ss_dssp             HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred             HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence            99999999999999999999999999998887654468999999999999876667777777766556667789999999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030192          161 TSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~  179 (181)
                      ++|.|++++++++.+.+..
T Consensus       160 ~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          160 LTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             TTTBTHHHHHHHHHHHHCC
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9999999999999988754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=100.00  E-value=7.1e-38  Score=217.41  Aligned_cols=180  Identities=52%  Similarity=0.974  Sum_probs=158.7

Q ss_pred             CchhHHHHHH--hhhc-ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccc
Q 030192            1 MGLTFTKLFS--RLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL   77 (181)
Q Consensus         1 ~~~~~~~~~~--~~~~-~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (181)
                      ||.+++++++  +++. ++.++|+++|++|+|||||++++.++.+....||.+.....+...+..+.+|||||++++...
T Consensus         3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~   82 (189)
T 2x77_A            3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY   82 (189)
T ss_dssp             ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred             hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence            7777777777  6777 789999999999999999999999888877788888888888889999999999999999999


Q ss_pred             hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030192           78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS  157 (181)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      +..+++++|++++|+|+++++++.....++..++......++|+++|+||+|+.+....+++.+.+....++..++++++
T Consensus        83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (189)
T 2x77_A           83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK  162 (189)
T ss_dssp             CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence            99999999999999999999999999999999888766678999999999999887677778877776666777889999


Q ss_pred             ccccCCCChHHHHHHHHHHhhhc
Q 030192          158 TCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       158 ~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      +||++|.|++++++++.+.+.++
T Consensus       163 ~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          163 SSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             ccCCCccCHHHHHHHHHHHHHhc
Confidence            99999999999999999988764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=100.00  E-value=6.3e-37  Score=212.04  Aligned_cols=178  Identities=47%  Similarity=0.880  Sum_probs=147.9

Q ss_pred             CchhHHHHHHhhhc-ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchh
Q 030192            1 MGLTFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR   79 (181)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (181)
                      || .|+ ++++++. ++.++|+++|++|+|||||++++.+.......||.+.....+...+..+.+|||||++++...+.
T Consensus         3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~   80 (186)
T 1ksh_A            3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR   80 (186)
T ss_dssp             ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred             cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence            56 455 5566665 78899999999999999999999988855678888888888888999999999999999999999


Q ss_pred             hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcc
Q 030192           80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC  159 (181)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      .+++++|++++|+|+++++++.....|+..++......++|+++|+||+|+.+....+++.+.+....++..+++++++|
T Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1ksh_A           81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS  160 (186)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence            99999999999999999999999999998888765556899999999999988777777777776665666788999999


Q ss_pred             ccCCCChHHHHHHHHHHhhhc
Q 030192          160 ATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       160 ~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      |++|.|++++++++.+.+.++
T Consensus       161 a~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          161 AVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999988764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=100.00  E-value=2.1e-37  Score=215.84  Aligned_cols=176  Identities=81%  Similarity=1.298  Sum_probs=152.6

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccc
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN   84 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (181)
                      ++++++++..++.++|+++|++|+|||||++++.++.+....||.+.....+...++.+.+||+||++++...+..++++
T Consensus        17 ~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   96 (192)
T 2b6h_A           17 RGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQN   96 (192)
T ss_dssp             CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHT
T ss_pred             HHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhcc
Confidence            34566778888999999999999999999999999888777888888888888899999999999999999999999999


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  164 (181)
                      +|++++|+|+++++++.....|+..++......++|+++|+||+|+.+....+++.+.+....++..+++++++||++|.
T Consensus        97 ~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~  176 (192)
T 2b6h_A           97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGT  176 (192)
T ss_dssp             CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence            99999999999999999999999988876555689999999999998776777888888777777778899999999999


Q ss_pred             ChHHHHHHHHHHhhhc
Q 030192          165 GLYEGLDWLSNNIASK  180 (181)
Q Consensus       165 gv~~~~~~i~~~~~~~  180 (181)
                      |++++|+++.+.+.++
T Consensus       177 gi~~l~~~l~~~i~~q  192 (192)
T 2b6h_A          177 GLYDGLDWLSHELSKR  192 (192)
T ss_dssp             THHHHHHHHHHHTTTC
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            9999999999988764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=1.3e-35  Score=202.53  Aligned_cols=166  Identities=58%  Similarity=1.017  Sum_probs=150.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   94 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (181)
                      ++.++|+++|++|+|||||++++.+..+....||.+.....+......+.+|||||++++...+..+++++|++++|+|+
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   84 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS   84 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence            46799999999999999999999998888788888888888888999999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192           95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS  174 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~  174 (181)
                      ++++++.....++..++......++|+++|+||+|+.+....+++...+....++..+++++++||++|.|++++|+++.
T Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  164 (171)
T 1upt_A           85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV  164 (171)
T ss_dssp             TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence            99999999999999888765556899999999999988777778888777766777788999999999999999999999


Q ss_pred             HHhhhc
Q 030192          175 NNIASK  180 (181)
Q Consensus       175 ~~~~~~  180 (181)
                      +.+.++
T Consensus       165 ~~i~~~  170 (171)
T 1upt_A          165 ETLKSR  170 (171)
T ss_dssp             HHHHTC
T ss_pred             HHHhhc
Confidence            988764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=100.00  E-value=4.2e-36  Score=203.70  Aligned_cols=163  Identities=91%  Similarity=1.401  Sum_probs=144.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   97 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (181)
                      ++|+++|++|+|||||++++.++.+....||.+.....+...++.+.+||+||++++...+..+++++|++++|+|++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   80 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence            58999999999999999999988887778888888788888899999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192           98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      +++.....|+..+.......+.|+++|+||+|+.+....+++...+....++..+++++++||++|.|++++|+++.+.+
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  160 (164)
T 1r8s_A           81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (164)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence            99999999998888765556899999999999987766777888777766777788999999999999999999999988


Q ss_pred             hhc
Q 030192          178 ASK  180 (181)
Q Consensus       178 ~~~  180 (181)
                      .++
T Consensus       161 ~~~  163 (164)
T 1r8s_A          161 RNQ  163 (164)
T ss_dssp             ---
T ss_pred             hhc
Confidence            654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=100.00  E-value=4.9e-36  Score=207.02  Aligned_cols=173  Identities=47%  Similarity=0.845  Sum_probs=148.9

Q ss_pred             HHHhhhc--ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccc
Q 030192            8 LFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT   85 (181)
Q Consensus         8 ~~~~~~~--~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (181)
                      +++++..  .+.++|+++|++|+|||||++++.+..+....||.+.....+...++.+.+|||||++++...+..+++.+
T Consensus         5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   84 (181)
T 1fzq_A            5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENT   84 (181)
T ss_dssp             HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred             HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCC
Confidence            3444444  67899999999999999999999998877778888888778888899999999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      |++++|+|+++++++.....|+..++......++|+++|+||+|+.+....+++.+.+....+...+++++++||++|.|
T Consensus        85 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  164 (181)
T 1fzq_A           85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEG  164 (181)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCC
Confidence            99999999999999999999988887765556899999999999987767777777776665666778999999999999


Q ss_pred             hHHHHHHHHHHhhhc
Q 030192          166 LYEGLDWLSNNIASK  180 (181)
Q Consensus       166 v~~~~~~i~~~~~~~  180 (181)
                      ++++|+++.+.+.++
T Consensus       165 i~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          165 VQDGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=100.00  E-value=6e-35  Score=203.04  Aligned_cols=171  Identities=37%  Similarity=0.599  Sum_probs=140.0

Q ss_pred             HHHHHhh-hcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccc
Q 030192            6 TKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN   84 (181)
Q Consensus         6 ~~~~~~~-~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (181)
                      .+.++.. ...+.++|+++|++|+|||||++++.++.+..+.||.+.....+...++.+.+|||||+++++..+..++++
T Consensus        11 ~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   90 (190)
T 1m2o_B           11 RDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPE   90 (190)
T ss_dssp             -------------CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTT
T ss_pred             HHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhc
Confidence            3333433 335678999999999999999999999888777888888888888889999999999999999999999999


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc-------ccCcceEEEE
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-------LRQRHWYIQS  157 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  157 (181)
                      +|++++|+|+++++++.....|+..+.......++|+++|+||+|+.+....+++.+.+....       ....++++++
T Consensus        91 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (190)
T 1m2o_B           91 VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFM  170 (190)
T ss_dssp             CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEE
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEE
Confidence            999999999999999999999998888765556899999999999987666677777665432       2345678999


Q ss_pred             ccccCCCChHHHHHHHHHH
Q 030192          158 TCATSGEGLYEGLDWLSNN  176 (181)
Q Consensus       158 ~S~~~~~gv~~~~~~i~~~  176 (181)
                      +||++|.|++++|+++.+.
T Consensus       171 ~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          171 CSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CBTTTTBSHHHHHHHHHTT
T ss_pred             eECCcCCCHHHHHHHHHhh
Confidence            9999999999999999764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=100.00  E-value=5.2e-35  Score=201.75  Aligned_cols=164  Identities=48%  Similarity=0.867  Sum_probs=143.7

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      ...+.++|+++|++|+|||||+++|.+..+....++.+.....+...+..+.+||+||++++...+..+++++|++++|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~   96 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV   96 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence            33578999999999999999999999998866778888888888888999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      |+++++++.....++..+.......++|+++|+||+|+.+....+++.+.+....++..+++++++||++|.|++++|++
T Consensus        97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  176 (181)
T 2h17_A           97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEW  176 (181)
T ss_dssp             ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHH
Confidence            99999999999999998887654468999999999999877667778777776666677889999999999999999999


Q ss_pred             HHHH
Q 030192          173 LSNN  176 (181)
Q Consensus       173 i~~~  176 (181)
                      +.+.
T Consensus       177 l~~~  180 (181)
T 2h17_A          177 MMSR  180 (181)
T ss_dssp             HHTC
T ss_pred             HHhh
Confidence            8764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=100.00  E-value=6e-35  Score=202.61  Aligned_cols=167  Identities=31%  Similarity=0.676  Sum_probs=146.9

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      .++.++|+++|++|+|||||+++|.+..+. ...||.+..+..+...++.+.+||+||++++...+..+++++|++++|+
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   98 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV   98 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence            357899999999999999999999988876 4578888888888889999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      |+++++++.....|+..++......++|+++|+||+|+.+....+++.+.+....+...+++++++||++|.|++++|++
T Consensus        99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~  178 (188)
T 1zd9_A           99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW  178 (188)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence            99999999999999998887655568999999999999876666777777776666667889999999999999999999


Q ss_pred             HHHHhhhc
Q 030192          173 LSNNIASK  180 (181)
Q Consensus       173 i~~~~~~~  180 (181)
                      +.+.+.++
T Consensus       179 l~~~~~~~  186 (188)
T 1zd9_A          179 LIQHSKSR  186 (188)
T ss_dssp             HHHTCC--
T ss_pred             HHHHHHhh
Confidence            99887653

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=100.00  E-value=7.1e-35  Score=203.92  Aligned_cols=170  Identities=29%  Similarity=0.598  Sum_probs=135.2

Q ss_pred             HHHhh-hcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccccc
Q 030192            8 LFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ   86 (181)
Q Consensus         8 ~~~~~-~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (181)
                      +++.+ ...+.++|+++|++|+|||||++++.++.+..+.||.+.....+...++.+.+|||||+++++..+..+++.+|
T Consensus        15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   94 (198)
T 1f6b_A           15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAIN   94 (198)
T ss_dssp             HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCS
T ss_pred             HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCC
Confidence            44443 34677899999999999999999999988877778888777788888899999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------c---cCcceE
Q 030192           87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------L---RQRHWY  154 (181)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~---------~---~~~~~~  154 (181)
                      ++++|+|+++++++.....|+..++......++|+++|+||+|+.+....+++.+.+....         +   ...+++
T Consensus        95 ~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (198)
T 1f6b_A           95 GIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLE  174 (198)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEE
Confidence            9999999999999999999999888765556899999999999987656666666655322         1   125678


Q ss_pred             EEEccccCCCChHHHHHHHHHHh
Q 030192          155 IQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       155 ~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      +++|||++|.|++++|+++.+.+
T Consensus       175 ~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          175 VFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EEECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            99999999999999999998754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=4.5e-35  Score=204.55  Aligned_cols=170  Identities=36%  Similarity=0.644  Sum_probs=144.4

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccc--cCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      ..+.....+|+++|++|+|||||+++|.+..+...  .+|.+.....+....+.+.+|||||++++...+..+++++|++
T Consensus        11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   90 (199)
T 4bas_A           11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV   90 (199)
T ss_dssp             -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence            34556889999999999999999999999987753  7899988888889999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCC-------CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEccc
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNEDEL-------RDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCA  160 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~  160 (181)
                      ++|||+++++++.....|+..++.....       .++|+++|+||+|+.+....+++.+.+....+ +..+++++++||
T Consensus        91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  170 (199)
T 4bas_A           91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNG  170 (199)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBT
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeC
Confidence            9999999999999999999888775322       27899999999999888777788887776554 567889999999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030192          161 TSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~~  180 (181)
                      ++|.|++++|+++.+.+.++
T Consensus       171 ~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          171 LKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             TTTBTHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHHH
Confidence            99999999999999987653

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.6e-36  Score=214.51  Aligned_cols=160  Identities=16%  Similarity=0.346  Sum_probs=121.9

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--EE--ECCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      +.+.+||+++|++|||||||+++|..+.+.. +.||.+..+..  +.  ...+.+++|||+|+++|..++..+++.++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            4577999999999999999999999998874 47888765433  22  3557899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      ++|||+++++++..+..|+..+..... .++|++||+||+|+.+..  ..++..     .+++..+++|++|||++|.||
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~-----~~a~~~~~~~~e~SAktg~nV  163 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGE-----RKAKELNVMFIETSAKAGYNV  163 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHH-----HHHHHHTCEEEEEBTTTTBSH
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHh-----hHHHHhCCeeEEEeCCCCcCH
Confidence            999999999999999999988765433 579999999999997643  222221     122234457999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030192          167 YEGLDWLSNNIAS  179 (181)
Q Consensus       167 ~~~~~~i~~~~~~  179 (181)
                      +++|+.|++.+..
T Consensus       164 ~e~F~~i~~~i~~  176 (216)
T 4dkx_A          164 KQLFRRVAAALPG  176 (216)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.2e-34  Score=197.39  Aligned_cols=166  Identities=43%  Similarity=0.790  Sum_probs=141.6

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCC-c-ccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGE-I-VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      ..+.++|+++|++|+|||||+++|.+.. + ....+|.+.....+...+..+.+|||||++++...+..+++++|++++|
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   97 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV   97 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            3578999999999999999999999887 3 3557788888788888889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCC--CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +|+++++++.....|+..+......  .++|+++|+||+|+.+....+++.+.+....+...+++++++||++|.|++++
T Consensus        98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  177 (190)
T 2h57_A           98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEG  177 (190)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence            9999999999999999888876544  57999999999999877667777776665555556789999999999999999


Q ss_pred             HHHHHHHhhh
Q 030192          170 LDWLSNNIAS  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |+++.+.+.+
T Consensus       178 ~~~l~~~i~~  187 (190)
T 2h57_A          178 VDWLQDQIQT  187 (190)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.8e-34  Score=213.71  Aligned_cols=167  Identities=91%  Similarity=1.388  Sum_probs=148.5

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      .++.++|+++|++|+|||||+++|.+..+....||.+.....+...++.+.+|||||++++...+..+++.+|++++|||
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D  241 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD  241 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            35678999999999999999999999988877789999988999999999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHH
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL  173 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i  173 (181)
                      +++++++.....++..++......++|+++|+||+|+.+....+++...+....++..+++++++||++|.|++++|+.|
T Consensus       242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l  321 (329)
T 3o47_A          242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL  321 (329)
T ss_dssp             TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence            99999999999999999887666789999999999999887888899989888888889999999999999999999999


Q ss_pred             HHHhhhc
Q 030192          174 SNNIASK  180 (181)
Q Consensus       174 ~~~~~~~  180 (181)
                      .+.+.++
T Consensus       322 ~~~l~~~  328 (329)
T 3o47_A          322 SNQLRNQ  328 (329)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHhc
Confidence            9988764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=9.7e-33  Score=187.45  Aligned_cols=159  Identities=17%  Similarity=0.164  Sum_probs=105.8

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEE-E--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      .+||+++|++|+|||||++++.+.......++.+.... .  +....+.+.+||+||++++...+..+++.+|++++|||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   81 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence            58999999999999999999998776555555544432 2  22345689999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      +++++++.....|+..+.......++|+++|+||+|+.+....  ++... +    ....+++++++||++|.|++++|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l~~  156 (166)
T 3q72_A           82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA-C----AVVFDCKFIETSAALHHNVQALFE  156 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHH-H----HHHTTCEEEECBGGGTBSHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHH-H----HHHhCCcEEEeccCCCCCHHHHHH
Confidence            9999999999999998887665578999999999999764322  22111 1    122345799999999999999999


Q ss_pred             HHHHHhhhc
Q 030192          172 WLSNNIASK  180 (181)
Q Consensus       172 ~i~~~~~~~  180 (181)
                      ++.+.+.++
T Consensus       157 ~l~~~~~~~  165 (166)
T 3q72_A          157 GVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999988754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.98  E-value=1.3e-32  Score=187.20  Aligned_cols=163  Identities=21%  Similarity=0.408  Sum_probs=125.2

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .++|+++|++|+|||||++++.+..+. ...|+.+...  ..+..  ..+.+.+||+||++++...+..+++++|++++|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence            589999999999999999999988865 3456666544  33333  346899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      +|++++.++.....|+..+.... ..+.|+++|+||+|+.+.....++.........+..+++++++||++|.|++++|+
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           83 YDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999988888877776543 25799999999999865411111110011111223345799999999999999999


Q ss_pred             HHHHHhhhc
Q 030192          172 WLSNNIASK  180 (181)
Q Consensus       172 ~i~~~~~~~  180 (181)
                      ++.+.+.++
T Consensus       162 ~l~~~i~~k  170 (170)
T 1ek0_A          162 GIGEKIPLK  170 (170)
T ss_dssp             HHHTTSCCC
T ss_pred             HHHHHHhhC
Confidence            999887654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.98  E-value=4.5e-32  Score=189.96  Aligned_cols=166  Identities=14%  Similarity=0.154  Sum_probs=125.1

Q ss_pred             HhhhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccc
Q 030192           10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNT   85 (181)
Q Consensus        10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (181)
                      +..+..+.++|+++|++|+|||||+++|.+..+.. ..++.+..+.   .+....+.+.+|||||++++...+..+++.+
T Consensus        17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   96 (201)
T 3oes_A           17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV   96 (201)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred             CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence            44555788999999999999999999999988764 3556654432   2334678999999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCC
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~  163 (181)
                      |++++|||+++++++.....|+..+.......++|+++|+||+|+.+....  ++...     ..+..+++++++||++|
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~  171 (201)
T 3oes_A           97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK-----LAESWGATFMESSAREN  171 (201)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECCTTCH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH-----HHHHhCCeEEEEeCCCC
Confidence            999999999999999999999888887665568999999999998754322  22111     11223457999999999


Q ss_pred             CChHHHHHHHHHHhhhc
Q 030192          164 EGLYEGLDWLSNNIASK  180 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~~~  180 (181)
                      .|++++|.++.+.+.++
T Consensus       172 ~~v~~l~~~l~~~i~~~  188 (201)
T 3oes_A          172 QLTQGIFTKVIQEIARV  188 (201)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999988654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.98  E-value=3.7e-32  Score=187.19  Aligned_cols=162  Identities=15%  Similarity=0.165  Sum_probs=126.8

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ..+.++|+++|++|+|||||+++|.++.+.. ..++.+..+. .+...+  +.+.+||+||++++...+..+++.+|+++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            4567999999999999999999999877653 4566665542 233443  78899999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||+++++++.....|+..+.......++|+++|+||+|+.+...  .++....     .+..+++++++||++|.|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~  157 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL-----AESWNAAFLESSAKENQTAV  157 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCEEEECCTTSHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHH-----HHHhCCcEEEEecCCCCCHH
Confidence            9999999999999999888887765556899999999999865432  2222221     12234579999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      ++|+++.+.+.++
T Consensus       158 ~l~~~l~~~~~~~  170 (181)
T 3t5g_A          158 DVFRRIILEAEKM  170 (181)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.97  E-value=1.9e-31  Score=182.46  Aligned_cols=160  Identities=16%  Similarity=0.129  Sum_probs=114.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE--EEEEEC--CEEEEEEEcCCCCC--cccchhhccccccEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYK--NISFTVWDVGGQDK--IRPLWRHYFQNTQGL   88 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~--~~~~~~~~~~~~d~~   88 (181)
                      +..++|+++|++|+|||||+++|.+..+....++.+.+.  ..+...  .+.+.+||+||+++  +......+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            456899999999999999999999988765555555443  334443  45889999999987  566677888999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      ++|||++++.++.....|+..+.......++|+++|+||+|+.+...  .++...     .....+++++++||++|.|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~g~gi  156 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-----CAVVFDCKFIETSATLQHNV  156 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-----HHHHHTSEEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-----HHHHcCCeEEEEecCCCCCH
Confidence            99999999999999988887776654445799999999999976432  222211     11223457999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030192          167 YEGLDWLSNNIAS  179 (181)
Q Consensus       167 ~~~~~~i~~~~~~  179 (181)
                      +++|+++.+.+.+
T Consensus       157 ~~l~~~l~~~~~~  169 (175)
T 2nzj_A          157 AELFEGVVRQLRL  169 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.97  E-value=7.2e-31  Score=181.57  Aligned_cols=158  Identities=14%  Similarity=0.235  Sum_probs=122.0

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      .+.+.+||+++|++|+|||||++++.++.+.. ..|+.+.....+...+  +.+.+|||+|++++.     +++.+|+++
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i   90 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV   90 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence            44678999999999999999999999988764 3455443333444444  678889999998876     678899999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCcccCc-ceEEEEccccCCC
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN----AMNAAEITDKLGLHSLRQR-HWYIQSTCATSGE  164 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~  164 (181)
                      +|||++++.+++.+..|+..+.......++|+++|+||+|+.+    ....++..+..     +.. .++++++||++|.
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa~~~~  165 (184)
T 3ihw_A           91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS-----TDLKRCTYYETCATYGL  165 (184)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH-----HHTTTCEEEEEBTTTTB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH-----HHcCCCeEEEecCCCCC
Confidence            9999999999999988888887765446799999999999842    12222222211     111 2478999999999


Q ss_pred             ChHHHHHHHHHHhhhc
Q 030192          165 GLYEGLDWLSNNIASK  180 (181)
Q Consensus       165 gv~~~~~~i~~~~~~~  180 (181)
                      |++++|+++.+.+.++
T Consensus       166 gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          166 NVERVFQDVAQKVVAL  181 (184)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999987653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.97  E-value=4e-31  Score=179.43  Aligned_cols=158  Identities=20%  Similarity=0.289  Sum_probs=124.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE-EE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~-~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +.++|+++|++|+|||||++++.++.+.. ..++.+..+.. +.  ...+.+.+||+||++++...+..+++++|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            45899999999999999999999887753 45666544432 22  2457899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccC-cceEEEEccccCCCChHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQ-RHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~gv~~  168 (181)
                      ||+++++++.....|+..+.......++|+++|+||+|+.+...  .++.....     +. .+.+++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~  156 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA-----RQWCNCAFLESSAKSKINVNE  156 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTSCEEEECBTTTTBSHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHH-----HHccCCcEEEecCCCCCCHHH
Confidence            99999999988888877776644446899999999999975432  22222211     11 245799999999999999


Q ss_pred             HHHHHHHHhh
Q 030192          169 GLDWLSNNIA  178 (181)
Q Consensus       169 ~~~~i~~~~~  178 (181)
                      +++++.+.+.
T Consensus       157 l~~~l~~~i~  166 (167)
T 1c1y_A          157 IFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.97  E-value=4.7e-32  Score=184.02  Aligned_cols=160  Identities=19%  Similarity=0.301  Sum_probs=124.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +.++|+++|++|+|||||++++.+..+.. ..++.+..+. .+...  .+.+.+||+||++++...+..+++.+|++++|
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            56899999999999999999999888653 3455554432 23333  46899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      ||+++++++.....|+..+.......++|+++|+||+|+.+..  ..++.....     +..+++++++||++|.|++++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T 1u8z_A           83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKV  157 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHHH
Confidence            9999999999888888877765544579999999999987542  222332222     223457999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030192          170 LDWLSNNIASK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |+++.+.+.++
T Consensus       158 ~~~l~~~i~~~  168 (168)
T 1u8z_A          158 FFDLMREIRAR  168 (168)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999988764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.97  E-value=5.5e-31  Score=179.12  Aligned_cols=160  Identities=20%  Similarity=0.365  Sum_probs=126.3

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      +.+.++|+++|++|+|||||+++|.++.+.. ..++.+...  ..+..  ..+.+.+||+||++++...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            3567999999999999999999999887664 355665544  23333  357899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      ++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+..  ..++....     .+..+++++++||++|.|+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~gi  156 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQSY-----ADDNSLLFMETSAKTSMNV  156 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccccCHHHHHHH-----HHHcCCeEEEEeCCCCCCH
Confidence            999999999999888888777665432 579999999999986532  22232221     1224567999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030192          167 YEGLDWLSNNIAS  179 (181)
Q Consensus       167 ~~~~~~i~~~~~~  179 (181)
                      +++|+++.+.+.+
T Consensus       157 ~~l~~~i~~~~~~  169 (170)
T 1r2q_A          157 NEIFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.97  E-value=1.5e-32  Score=192.10  Aligned_cols=166  Identities=18%  Similarity=0.341  Sum_probs=116.6

Q ss_pred             HhhhcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhcccc
Q 030192           10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQN   84 (181)
Q Consensus        10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~   84 (181)
                      ++...++.++|+++|++|+|||||++++.+..+. ...++.+..+  ..+...  .+.+.+||+||++++...+..+++.
T Consensus        21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  100 (199)
T 2p5s_A           21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK  100 (199)
T ss_dssp             -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred             CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence            3455567899999999999999999999988865 3455555433  334443  4689999999999999999999999


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC------CC--CHhHHHhhhCCCcccCcceEEE
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN------AM--NAAEITDKLGLHSLRQRHWYIQ  156 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~------~~--~~~~~~~~~~~~~~~~~~~~~~  156 (181)
                      +|++++|||++++.++.....|+..+... ...++|+++|+||+|+.+      ..  ..++...     ..+..+++++
T Consensus       101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~  174 (199)
T 2p5s_A          101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK-----LAMTYGALFC  174 (199)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH-----HHHHHTCEEE
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHH-----HHHHcCCeEE
Confidence            99999999999999988888776655432 224789999999999852      11  1111111     1222355799


Q ss_pred             EccccCCCChHHHHHHHHHHhhhcC
Q 030192          157 STCATSGEGLYEGLDWLSNNIASKA  181 (181)
Q Consensus       157 ~~S~~~~~gv~~~~~~i~~~~~~~~  181 (181)
                      ++||++|.|++++|.++.+.+.++|
T Consensus       175 ~~SA~~g~gv~el~~~l~~~i~~~~  199 (199)
T 2p5s_A          175 ETSAKDGSNIVEAVLHLAREVKKRT  199 (199)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHTC--
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHhhC
Confidence            9999999999999999999998876

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.97  E-value=1.3e-30  Score=179.75  Aligned_cols=162  Identities=17%  Similarity=0.186  Sum_probs=126.8

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ....++|+++|++|+|||||+++|.+..+.. ..++.+..+. .+...  .+.+.+||+||++++...+..+++++|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   94 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   94 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            4567999999999999999999999887663 4555554432 23333  456778999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEcccc-CCCCh
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCAT-SGEGL  166 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~gv  166 (181)
                      +|||+++++++.....|+..+.......++|+++|+||+|+.+..  ..++.....     +..+++++++||+ +|.|+
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~~v  169 (183)
T 3kkq_A           95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKYNIPYIETSAKDPPLNV  169 (183)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHHTCCEEEEBCSSSCBSH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH-----HHhCCeEEEeccCCCCCCH
Confidence            999999999999998888877665444689999999999987632  222222111     1123468999999 99999


Q ss_pred             HHHHHHHHHHhhhc
Q 030192          167 YEGLDWLSNNIASK  180 (181)
Q Consensus       167 ~~~~~~i~~~~~~~  180 (181)
                      +++|+++.+.+.++
T Consensus       170 ~~l~~~l~~~i~~q  183 (183)
T 3kkq_A          170 DKTFHDLVRVIRQQ  183 (183)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999988764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.97  E-value=6.2e-31  Score=180.69  Aligned_cols=162  Identities=18%  Similarity=0.269  Sum_probs=129.0

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEEC--CEEEEEEEcCCCCCcccchhhccccccEE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      ++.+.++|+++|++|+|||||+++|.+..+.. ..++.+..+. .+...  .+.+.+||+||++++...+..+++.+|++
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            34677999999999999999999999987664 3556655443 23444  36899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      ++|||+++++++.....|+..++......++|+++|+||+|+.+...  .++... +    ....+++++++||++|.|+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gv  159 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-F----GASHHVAYFEASAKLRLNV  159 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBSH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-H----HHHcCCeEEEecCCCCCCH
Confidence            99999999999999988888876654446799999999999876432  222221 1    1223557999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030192          167 YEGLDWLSNNIAS  179 (181)
Q Consensus       167 ~~~~~~i~~~~~~  179 (181)
                      +++|+++.+.+.+
T Consensus       160 ~~l~~~l~~~~~~  172 (181)
T 2fn4_A          160 DEAFEQLVRAVRK  172 (181)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998765

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.97  E-value=5e-31  Score=186.49  Aligned_cols=161  Identities=17%  Similarity=0.185  Sum_probs=122.1

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      .....+||+++|++|+|||||+++|.++.+... .||.+..+.   .+....+.+.+|||+|++++...+..+++++|++
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  102 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV  102 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence            345789999999999999999999999887643 677766553   2334568999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCcccCcce
Q 030192           89 IFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRHW  153 (181)
Q Consensus        89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~  153 (181)
                      ++|||+++++++... ..|+..+... . .++|+++|+||+|+.+.              ...++...     .++..++
T Consensus       103 i~v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~  175 (214)
T 3q3j_B          103 LLCFDISRPETVDSALKKWRTEILDY-C-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA-----IAKQLGA  175 (214)
T ss_dssp             EEEEETTCTHHHHHHHTHHHHHHHHH-C-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH-----HHHHHTC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH-----HHHHcCC
Confidence            999999999999884 5555544432 2 57999999999998642              11211111     1122344


Q ss_pred             -EEEEccccCCCC-hHHHHHHHHHHhhhc
Q 030192          154 -YIQSTCATSGEG-LYEGLDWLSNNIASK  180 (181)
Q Consensus       154 -~~~~~S~~~~~g-v~~~~~~i~~~~~~~  180 (181)
                       ++++|||++|.| ++++|+.+.+.+.++
T Consensus       176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~  204 (214)
T 3q3j_B          176 EIYLEGSAFTSEKSIHSIFRTASMLCLNK  204 (214)
T ss_dssp             SEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred             CEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence             799999999998 999999999987653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.97  E-value=3.8e-31  Score=182.37  Aligned_cols=159  Identities=20%  Similarity=0.367  Sum_probs=99.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +..++|+++|++|+|||||+++|.+..+. ...|+.+..+  ..+...+  +.+.+||+||++++...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            45689999999999999999999988765 3456666544  3445544  78999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||++++.++.....|+..+.... ..++|+++|+||+|+.+...  .++....     .+..+++++++||++|.|++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  159 (183)
T 2fu5_C           86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKL-----ALDYGIKFMETSAKANINVE  159 (183)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHH-----HHHHTCEEEECCC---CCHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Confidence            9999999999988888777665532 25799999999999976432  2222221     12234579999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|.++.+.+.+
T Consensus       160 ~l~~~l~~~i~~  171 (183)
T 2fu5_C          160 NAFFTLARDIKA  171 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.4e-30  Score=179.90  Aligned_cols=161  Identities=24%  Similarity=0.384  Sum_probs=127.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      .+.++|+++|++|+|||||+++|.+..+. ...++.+..+  ..+..  ..+.+.+|||||++++...+..+++.+|+++
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            45689999999999999999999998875 3456666544  33333  3578999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      +|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++....     ++..+++++++||++|.|+++
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~  167 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF-----ARKHSMLFIEASAKTCDGVQC  167 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHH-----HHHcCCEEEEecCCCCCCHHH
Confidence            9999999999988888887776654446799999999999965332 2222221     122345799999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030192          169 GLDWLSNNIASK  180 (181)
Q Consensus       169 ~~~~i~~~~~~~  180 (181)
                      +|+++.+.+.+.
T Consensus       168 l~~~l~~~~~~~  179 (195)
T 1x3s_A          168 AFEELVEKIIQT  179 (195)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhh
Confidence            999999987653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.97  E-value=7.4e-31  Score=178.58  Aligned_cols=159  Identities=23%  Similarity=0.387  Sum_probs=120.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ..++|+++|++|+|||||++++.+..+. ...++.+..+  ..+...  .+.+.+||+||++++...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            4589999999999999999999988875 3455655443  334433  4789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      |+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++....     .+..+++++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~~l  155 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEAL-----AKELGIPFIESSAKNDDNVNEI  155 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHH-----HHHHTCCEEECBTTTTBSHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHH-----HHHcCCeEEEEECCCCCCHHHH
Confidence            999999988888888776665532 25799999999999954332 2222211     1122346899999999999999


Q ss_pred             HHHHHHHhhhc
Q 030192          170 LDWLSNNIASK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |+++.+.+.++
T Consensus       156 ~~~l~~~~~~~  166 (170)
T 1g16_A          156 FFTLAKLIQEK  166 (170)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=7.5e-31  Score=182.70  Aligned_cols=162  Identities=22%  Similarity=0.290  Sum_probs=124.1

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCcccc-----------cCccceeEEE-----EEECCEEEEEEEcCCCCCcc
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVET-----VEYKNISFTVWDVGGQDKIR   75 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~~~-----~~~~~~~~~i~D~~g~~~~~   75 (181)
                      ...+..+||+++|++|+|||||++.+.+.....+           .||.+.++..     +....+.+.+|||||++++.
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            3446789999999999999999977765543332           2344444322     22345789999999999999


Q ss_pred             cchhhccccccEEEEEEECC------CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc
Q 030192           76 PLWRHYFQNTQGLIFVVDSN------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR  149 (181)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~  149 (181)
                      ..+..+++++|++++|||++      +.+++..+..|+...  .....++|+++|+||+|+.+....++..+....    
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----  162 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----  162 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT----
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccccCHHHHHHHHHh----
Confidence            99999999999999999999      445666666666665  223468999999999999877666666655443    


Q ss_pred             Ccce-EEEEccccCCCChHHHHHHHHHHhhhc
Q 030192          150 QRHW-YIQSTCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       150 ~~~~-~~~~~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                       .++ +++++||++|.|++++|+++.+.+.++
T Consensus       163 -~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          163 -EGKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             -TCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             -cCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence             344 689999999999999999999988653

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.97  E-value=9.2e-31  Score=181.08  Aligned_cols=161  Identities=20%  Similarity=0.316  Sum_probs=122.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      .+.++|+++|++|+|||||+++|.+..+... .++.+... ..+...  .+.+.+||+||++++...+..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            4578999999999999999999998887543 44444332 233333  4568889999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |||++++.++.....|+..+.......++|+++|+||+|+.+.....+....+    .+..+++++++||++|.|++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gi~~l~  157 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDL----ARSYGIPFIETSAKTRQGVDDAF  157 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHH----HHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHH----HHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999998888888775555689999999999997543222221111    11123468999999999999999


Q ss_pred             HHHHHHhhh
Q 030192          171 DWLSNNIAS  179 (181)
Q Consensus       171 ~~i~~~~~~  179 (181)
                      +++.+.+.+
T Consensus       158 ~~l~~~~~~  166 (189)
T 4dsu_A          158 YTLVREIRK  166 (189)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.97  E-value=1.1e-30  Score=181.77  Aligned_cols=161  Identities=22%  Similarity=0.321  Sum_probs=123.4

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE-EEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      .++.++|+++|++|+|||||++++.+..+.. ..+|.+..+.. +..  ..+.+.+|||||++++...+..+++++|+++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            3567999999999999999999999988763 45666655433 233  3467899999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceE-EEEccccCCC
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWY-IQSTCATSGE  164 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~  164 (181)
                      +|||+++++++......|...+... ..++|+++|+||+|+.+.    ...++.....     +..++. ++++||++|.
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  173 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC-----QKLGCVAYIEASSVAKI  173 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH-----HHHTCSCEEECBTTTTB
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHH-----HhcCCCEEEEeecCCCC
Confidence            9999999999988755555544432 257999999999998752    2222222211     112233 8899999999


Q ss_pred             ChHHHHHHHHHHhhhc
Q 030192          165 GLYEGLDWLSNNIASK  180 (181)
Q Consensus       165 gv~~~~~~i~~~~~~~  180 (181)
                      |++++|+++.+.+.++
T Consensus       174 gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          174 GLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             SHHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999988764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.97  E-value=1.2e-30  Score=181.16  Aligned_cols=162  Identities=20%  Similarity=0.366  Sum_probs=128.3

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE---EEEEC-----------CEEEEEEEcCCCCCcccc
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYK-----------NISFTVWDVGGQDKIRPL   77 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~---~~~~~-----------~~~~~i~D~~g~~~~~~~   77 (181)
                      ..+..++|+++|++|+|||||+++|.+..+. ...++.+..+.   .+...           .+.+.+||+||++++...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            3456799999999999999999999988765 34667776554   33333           469999999999999999


Q ss_pred             hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEE
Q 030192           78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYI  155 (181)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~  155 (181)
                      +..+++++|++++|+|++++.++.....|+..+.......++|+++|+||+|+.+..  ..++.....     +..++++
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~  161 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA-----EKYGIPY  161 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCE
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCCE
Confidence            999999999999999999999998888888777665444679999999999997532  222222211     1123468


Q ss_pred             EEccccCCCChHHHHHHHHHHhhh
Q 030192          156 QSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       156 ~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      +++||++|.|++++|+++.+.+.+
T Consensus       162 ~~~Sa~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          162 FETSAANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999988765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=3.9e-30  Score=178.90  Aligned_cols=167  Identities=20%  Similarity=0.317  Sum_probs=127.1

Q ss_pred             HHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE--EE--ECCEEEEEEEcCCCCCcccchhhc
Q 030192            7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHY   81 (181)
Q Consensus         7 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~~~~~~   81 (181)
                      .++.....++.++|+++|++|+|||||+++|.+..+. ...++.+.+...  +.  .....+.+||+||++++...+..+
T Consensus        13 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   92 (192)
T 2fg5_A           13 GLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY   92 (192)
T ss_dssp             --------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHH
T ss_pred             ccccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHh
Confidence            3444444567899999999999999999999998865 456777765433  22  256789999999999999999999


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEcc
Q 030192           82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTC  159 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      ++.+|++++|||++++.++.....|+..+.... ..++|+++|+||+|+.+..  ..++..+..     +..+++++++|
T Consensus        93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~S  166 (192)
T 2fg5_A           93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETS  166 (192)
T ss_dssp             HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECB
T ss_pred             hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEe
Confidence            999999999999999999988888776665432 2579999999999997532  233333322     23356899999


Q ss_pred             ccCCCChHHHHHHHHHHhhh
Q 030192          160 ATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       160 ~~~~~gv~~~~~~i~~~~~~  179 (181)
                      |++|.|++++++++.+.+.+
T Consensus       167 a~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          167 AKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             TTTTBSHHHHHHHHHHTCC-
T ss_pred             CCCCcCHHHHHHHHHHHHHh
Confidence            99999999999999988764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.97  E-value=3e-31  Score=180.53  Aligned_cols=159  Identities=16%  Similarity=0.158  Sum_probs=114.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccc---cCccceeEEEEEEC--CEEEEEEEcCCCCCccc-chhhccccccEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYK--NISFTVWDVGGQDKIRP-LWRHYFQNTQGLIF   90 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~   90 (181)
                      .++|+++|++|+|||||++++.+......   .++.......+...  .+.+.+||+||++++.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            47999999999999999999987664421   22333333334443  46889999999998876 67777889999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |||+++++++.....|+..+.......++|+++|+||+|+.+..  ..++....     .+..+++++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~  156 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL-----AGTLSCKHIETSAALHHNTRE  156 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECBTTTTBSHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHH-----HHHcCCcEEEecCccCCCHHH
Confidence            99999999999999999888776554589999999999987432  22222211     122345789999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030192          169 GLDWLSNNIASK  180 (181)
Q Consensus       169 ~~~~i~~~~~~~  180 (181)
                      +|+++.+.+..+
T Consensus       157 l~~~l~~~i~~~  168 (169)
T 3q85_A          157 LFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.97  E-value=1.8e-30  Score=181.97  Aligned_cols=160  Identities=21%  Similarity=0.369  Sum_probs=121.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +..++|+++|++|+|||||+++|.+..+. ...+|.+..+  ..+...+  +.+.+||+||++++...+..+++.+|+++
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            45689999999999999999999988875 3456665443  4455544  79999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcce-EEEEccccCCCCh
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHW-YIQSTCATSGEGL  166 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~gv  166 (181)
                      +|||+++++++.....|+..+.... ..++|+++|+||+|+.+..  ..++..+..     +..++ +++++||++|.|+
T Consensus       107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g~gi  180 (201)
T 2hup_A          107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHYDILCAIETSAKDSSNV  180 (201)
T ss_dssp             EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCSEEEECBTTTTBSH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHcCCCEEEEEeCCCCCCH
Confidence            9999999999988888877765533 2579999999999997532  233332221     12344 7899999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030192          167 YEGLDWLSNNIASK  180 (181)
Q Consensus       167 ~~~~~~i~~~~~~~  180 (181)
                      +++|+++.+.+.++
T Consensus       181 ~~l~~~l~~~i~~~  194 (201)
T 2hup_A          181 EEAFLRVATELIMR  194 (201)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.97  E-value=3e-31  Score=182.03  Aligned_cols=162  Identities=17%  Similarity=0.297  Sum_probs=124.4

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccce--eEEEEEECC---EEEEEEEcCCCCCcccchhhccccccE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~--~~~~~~~~~---~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .++.++|+++|++|+|||||+++|.+..+. ...||.+.  ....+...+   +.+.+||+||++++...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            356799999999999999999999988775 33566653  344555554   899999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  163 (181)
                      +++|||+++++++.....|+..+.....  ...+|+++|+||+|+.+..  ..++....     .+..+++++++||++|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~  157 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRF-----CQENGFSSHFVSAKTG  157 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCEEEEECTTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHH-----HHHcCCcEEEEeCCCC
Confidence            9999999999898888777665544210  1234589999999997532  22222221     1223457899999999


Q ss_pred             CChHHHHHHHHHHhhhc
Q 030192          164 EGLYEGLDWLSNNIASK  180 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~~~  180 (181)
                      .|++++|+++.+.+.++
T Consensus       158 ~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          158 DSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             TTHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999988764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=7.1e-32  Score=188.22  Aligned_cols=167  Identities=17%  Similarity=0.238  Sum_probs=124.6

Q ss_pred             HHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE-EEE--CCEEEEEEEcCCCCCcccchhhccc
Q 030192            8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQ   83 (181)
Q Consensus         8 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~   83 (181)
                      ++++....+.++|+++|++|+|||||+++|.+..+.. ..++.+..+.. +..  ..+.+.+||+||+++ ...+..+++
T Consensus        19 ~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~   97 (196)
T 2atv_A           19 YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMR   97 (196)
T ss_dssp             --------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHH
T ss_pred             chhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhc
Confidence            4556666788999999999999999999999988763 35666554432 333  347899999999988 777888899


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEcccc
Q 030192           84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCAT  161 (181)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~  161 (181)
                      .+|++++|||+++++++.....|+..+.......++|+++|+||+|+.+..  ..++....     .+..+++++++||+
T Consensus        98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~  172 (196)
T 2atv_A           98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL-----ATELACAFYECSAC  172 (196)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTSEEEECCTT
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHH-----HHHhCCeEEEECCC
Confidence            999999999999999998888887776654444679999999999987532  22222211     11234579999999


Q ss_pred             CCC-ChHHHHHHHHHHhhhc
Q 030192          162 SGE-GLYEGLDWLSNNIASK  180 (181)
Q Consensus       162 ~~~-gv~~~~~~i~~~~~~~  180 (181)
                      +|. |++++|+++.+.+.++
T Consensus       173 ~g~~gi~~l~~~l~~~i~~~  192 (196)
T 2atv_A          173 TGEGNITEIFYELCREVRRR  192 (196)
T ss_dssp             TCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHHhh
Confidence            999 9999999999988654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.97  E-value=4.7e-30  Score=178.64  Aligned_cols=160  Identities=20%  Similarity=0.366  Sum_probs=125.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +..++|+++|++|+|||||+++|.+..+. ...++.+...  ..+...+  +.+.+||+||++++...+..+++.+|+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            45689999999999999999999998865 3456655443  4445544  78999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||++++.++.....|+..+..... .++|+++|+||+|+.+....  ++....     .+..+++++++||++|.|++
T Consensus        94 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~gv~  167 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEF-----ADSLGIPFLETSAKNATNVE  167 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCCEEEECTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccccccccCHHHHHHH-----HHHcCCcEEEEeCCCCCCHH
Confidence            99999999999888887766654322 57999999999999765322  222111     11123468999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      ++|.++.+.+.++
T Consensus       168 ~l~~~l~~~i~~~  180 (196)
T 3tkl_A          168 QSFMTMAAEIKKR  180 (196)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.97  E-value=3.7e-30  Score=181.78  Aligned_cols=164  Identities=24%  Similarity=0.302  Sum_probs=121.0

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEEC---CEEEEEEEcCCCCCccc-chhhccccccEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK---NISFTVWDVGGQDKIRP-LWRHYFQNTQGLI   89 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i   89 (181)
                      ..+.++|+++|++|+|||||+++|.+..+....++.......+...   .+.+.+|||||++++.. .+..+++.+|+++
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i   83 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV   83 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence            3567999999999999999999999988876666666666556655   68999999999999987 7888899999999


Q ss_pred             EEEECCCcc-cHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----------------------
Q 030192           90 FVVDSNDRD-RVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLG----------------------  144 (181)
Q Consensus        90 ~v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~----------------------  144 (181)
                      +|||+++.. ++.....+|...+..  ....++|+++|+||+|+.+....+++...+.                      
T Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~  163 (214)
T 2fh5_B           84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST  163 (214)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred             EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence            999998753 456666667666543  1224799999999999987654433322211                      


Q ss_pred             -C--------Cccc-Cc--ceEEEEccccCC------CChHHHHHHHHHHh
Q 030192          145 -L--------HSLR-QR--HWYIQSTCATSG------EGLYEGLDWLSNNI  177 (181)
Q Consensus       145 -~--------~~~~-~~--~~~~~~~S~~~~------~gv~~~~~~i~~~~  177 (181)
                       .        .+.. ..  ++++++|||++|      .|++++|+++.+.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence             0        0111 11  788999999999      99999999998753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=7.9e-31  Score=183.79  Aligned_cols=159  Identities=19%  Similarity=0.328  Sum_probs=124.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ++.++|+++|++|+|||||+++|.+..+. ...++.+..+  ..+...  .+.+.+|||||++++...+..+++.+|+++
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            45689999999999999999999988876 3466666554  344444  368999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||++++.++..+..|+..+.... ..++|+++|+||+|+.+...  .++....     .+..+++++++||++|.|++
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~g~gv~  177 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEF-----SEAQDMYYLETSAKESDNVE  177 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCCEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence            9999999999988888776665432 25799999999999875322  2222211     12234568999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|+++.+.+.+
T Consensus       178 ~l~~~l~~~i~~  189 (201)
T 2ew1_A          178 KLFLDLACRLIS  189 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.5e-30  Score=177.66  Aligned_cols=160  Identities=18%  Similarity=0.391  Sum_probs=118.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccCccceeEEE--EEEC--CEEEEEEEcCCCCCcccchhhccccccEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~--~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      +..++|+++|++|+|||||+++|.+..+.  ...++.+..+..  +...  .+.+.+||+||++++...+..+++++|++
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   87 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   87 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence            56799999999999999999999998874  346676666543  2333  46899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      ++|+|++++.++.....|+..+..... .++|+++|+||+|+.+...  .++....     .+..+++++++||++|.|+
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi  161 (180)
T 2g6b_A           88 LLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKL-----AKEYGLPFMETSAKTGLNV  161 (180)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHH-----HHHHTCCEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHH-----HHHcCCeEEEEeCCCCCCH
Confidence            999999999888888887766655322 5799999999999976432  2222211     1122446899999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030192          167 YEGLDWLSNNIASK  180 (181)
Q Consensus       167 ~~~~~~i~~~~~~~  180 (181)
                      +++|+++.+.+.++
T Consensus       162 ~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          162 DLAFTAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.97  E-value=6.6e-31  Score=182.25  Aligned_cols=160  Identities=19%  Similarity=0.369  Sum_probs=125.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +..++|+++|++|+|||||+++|.+..+. ...++.+..+.  .+..  ..+.+.+||+||++++...+..+++.+|+++
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            45689999999999999999999998875 34566665543  3333  3568999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||++++.++.....|+..+.... ..++|+++|+||+|+.+...  .++..+.     .+..+++++++||++|.|++
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~gi~  173 (189)
T 2gf9_A          100 LMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRL-----ADDLGFEFFEASAKENINVK  173 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEECBTTTTBSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHH-----HHHcCCeEEEEECCCCCCHH
Confidence            9999999989888888776665432 35799999999999975432  2222211     11224479999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      ++|+++.+.+.++
T Consensus       174 ~l~~~l~~~i~~~  186 (189)
T 2gf9_A          174 QVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.97  E-value=1.7e-30  Score=179.45  Aligned_cols=159  Identities=20%  Similarity=0.349  Sum_probs=125.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ++.++|+++|++|+|||||++++.+..+.. ..++.+..+  ..+...+  +.+.+||+||++++...+..+++.+|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            456899999999999999999999888763 456665443  3344444  78999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||++++.++.....|+..+..... .++|+++|+||+|+.+..  ..++....     ++..+++++++||++|.|++
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  161 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRF-----AQENELMFLETSALTGENVE  161 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEecCCCCCCHH
Confidence            99999999999888887766544322 579999999999996532  22222221     22345689999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|+++.+.+.+
T Consensus       162 ~l~~~l~~~~~~  173 (186)
T 2bme_A          162 EAFVQCARKILN  173 (186)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.97  E-value=3e-30  Score=177.43  Aligned_cols=161  Identities=19%  Similarity=0.349  Sum_probs=125.6

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .+...++|+++|++|+|||||++++.+..+... .++.+..+  ..+...  .+.+.+||+||++++...+..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            345679999999999999999999998887643 45555443  333333  5689999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      +++|+|++++.++.....|+..+..... .++|+++|+||+|+.+...  .++.....     +..+++++++||++|.|
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g  161 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATN  161 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCC
Confidence            9999999999999888888777765432 5799999999999965432  23332221     22345799999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030192          166 LYEGLDWLSNNIAS  179 (181)
Q Consensus       166 v~~~~~~i~~~~~~  179 (181)
                      ++++|+++.+.+.+
T Consensus       162 i~~l~~~l~~~~~~  175 (181)
T 2efe_B          162 VKEIFYEIARRLPR  175 (181)
T ss_dssp             HHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.97  E-value=1.4e-30  Score=177.27  Aligned_cols=159  Identities=19%  Similarity=0.321  Sum_probs=118.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +..++|+++|++|+|||||++++.+..+. ...++.+..+.  .+..  ..+.+.+||+||++++...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            46789999999999999999999988775 34666665543  3333  4568999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|+|++++.++.....|+..+.... ..++|+++|+||+|+.+..  ..++....     .+..+++++++||++|.|++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  157 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESY-----AESVGAKHYHTSAKQNKGIE  157 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEEBTTTTBSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHH-----HHHcCCeEEEecCCCCCCHH
Confidence            9999999999988887776654321 2469999999999997632  22222221     12234578999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|+++.+.+.+
T Consensus       158 ~l~~~l~~~~~~  169 (170)
T 1z08_A          158 ELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998865

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.97  E-value=3.5e-31  Score=181.62  Aligned_cols=161  Identities=20%  Similarity=0.334  Sum_probs=124.9

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      ....++|+++|++|+|||||++++.+..+.. ..++.+...  ..+..  ..+.+.+||+||++++...+..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            3567999999999999999999999888754 355555443  33344  346899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      ++|+|++++.++.....|+..+.... ..++|+++|+||+|+.+..  ..++..+..     +..+++++++||++|.|+
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi  165 (179)
T 1z0f_A           92 LMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGENV  165 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred             EEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCH
Confidence            99999999988888887776655432 2579999999999996532  222332221     223457999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030192          167 YEGLDWLSNNIASK  180 (181)
Q Consensus       167 ~~~~~~i~~~~~~~  180 (181)
                      +++|+++.+.+.++
T Consensus       166 ~~l~~~l~~~i~~~  179 (179)
T 1z0f_A          166 EDAFLEAAKKIYQN  179 (179)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999988653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.97  E-value=7e-31  Score=180.42  Aligned_cols=158  Identities=22%  Similarity=0.399  Sum_probs=124.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +..++|+++|++|+|||||++++.+..+. ...++.+...  ..+...+  +.+.+||+||++++...+..+++.+|+++
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   86 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI   86 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence            56799999999999999999999988765 3456655443  4455555  78999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|+|++++.++.....|+..+....  .++|+++|+||+|+.+....  ++....     ....+++++++||++|.|++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  159 (181)
T 3tw8_B           87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKF-----AGQMGIQLFETSAKENVNVE  159 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCCEEECBTTTTBSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHH-----HHHcCCeEEEEECCCCCCHH
Confidence            9999999999998888877775532  47999999999998764321  222111     11223468899999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|+++.+.+.+
T Consensus       160 ~l~~~l~~~~~~  171 (181)
T 3tw8_B          160 EMFNCITELVLR  171 (181)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998765

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.97  E-value=2e-30  Score=177.77  Aligned_cols=163  Identities=13%  Similarity=0.296  Sum_probs=124.8

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      ....++|+++|++|+|||||++++.+..+. ...++.+..+  ..+...+  +.+.+||+||++++...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            356789999999999999999999988765 3466666554  3344444  6899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  164 (181)
                      ++|||++++.++.....|+..+...   ....++|+++|+||+|+.+.. ..++..+...    ...+++++++||++|.
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~  159 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT  159 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence            9999999998888887777665432   222578999999999987432 2333333221    0234468999999999


Q ss_pred             ChHHHHHHHHHHhhhc
Q 030192          165 GLYEGLDWLSNNIASK  180 (181)
Q Consensus       165 gv~~~~~~i~~~~~~~  180 (181)
                      |++++|+++.+.+.++
T Consensus       160 gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          160 NVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             THHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999988754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.97  E-value=7.2e-31  Score=178.64  Aligned_cols=159  Identities=22%  Similarity=0.360  Sum_probs=124.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      .+.++|+++|++|+|||||++++.+..+. ...++.+....  .+...  ...+.+||+||.+++...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45689999999999999999999998865 34566665443  33333  478999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|+|++++.++.....|+..+... ...+.|+++|+||+|+.+...  .++....     .+..+++++++||++|.|++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  157 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDY-----ADSIHAIFVETSAKNAININ  157 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECBTTTTBSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCcCHH
Confidence            999999999988887776665543 236799999999999976432  2222211     12234579999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|+++.+.+.+
T Consensus       158 ~l~~~i~~~i~~  169 (170)
T 1z0j_A          158 ELFIEISRRIPS  169 (170)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhc
Confidence            999999988754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.97  E-value=2.9e-30  Score=177.21  Aligned_cols=156  Identities=12%  Similarity=0.161  Sum_probs=118.2

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEE-EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ..+.+||+++|++|+|||||+++|.++.+..+.||.+..+. .+...  .+.+.+|||||+++     ..+++++|++++
T Consensus         4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            35679999999999999999999999888777777765432 33333  46899999999876     457788999999


Q ss_pred             EEECCCcccHHHHHHHHHHH--HcCCCCCCCeEEEEEeCCCCCC--C--CCHhHHHhhhCCCcccC-cceEEEEccccCC
Q 030192           91 VVDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPN--A--MNAAEITDKLGLHSLRQ-RHWYIQSTCATSG  163 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piivv~nK~Dl~~--~--~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~  163 (181)
                      |||+++++++.....|+..+  +......++|+++|+||+|+.+  .  ...++.....     +. .+++++++||++|
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~  153 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALX-----ADMKRCSYYETXATYG  153 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHH-----HHHSSEEEEEEBTTTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHH-----HhhcCCeEEEEecccc
Confidence            99999999999888864332  3333335799999999999842  1  1222322211     11 2468999999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030192          164 EGLYEGLDWLSNNIAS  179 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~~  179 (181)
                      .|++++|+++.+.+.+
T Consensus       154 ~~i~~lf~~l~~~~~~  169 (178)
T 2iwr_A          154 LNVDRVFQEVAQKVVT  169 (178)
T ss_dssp             BTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999988764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.97  E-value=3.2e-30  Score=179.30  Aligned_cols=160  Identities=19%  Similarity=0.327  Sum_probs=126.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +..++|+++|++|+|||||+++|.+..+.. ..++.+..+.  .+..  ..+.+.+||+||++++...+..+++.+|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi  102 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL  102 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            456899999999999999999999988763 4566665543  2333  4578999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||++++.++.....|+..+.... ..++|+++|+||+|+.+..  ..++....     ++..+++++++||++|.|++
T Consensus       103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  176 (193)
T 2oil_A          103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMF-----AENNGLLFLETSALDSTNVE  176 (193)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEECTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence            9999999988888888777766543 3579999999999997532  22222221     12234579999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      ++|+++.+.+.++
T Consensus       177 ~l~~~l~~~i~~~  189 (193)
T 2oil_A          177 LAFETVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.97  E-value=4.1e-30  Score=180.28  Aligned_cols=164  Identities=19%  Similarity=0.277  Sum_probs=128.7

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhcccccc
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQ   86 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (181)
                      +....+.++|+++|++|+|||||++++.+..+.. ..++.+..+ ..+...  .+.+.+||+||++++...+..+++.+|
T Consensus         8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   87 (206)
T 2bov_A            8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   87 (206)
T ss_dssp             ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence            3445677999999999999999999999888654 355555443 333443  368999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192           87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  164 (181)
                      ++++|||+++++++.....|+..+.......++|+++|+||+|+.+..  ..++.....     +..+++++++||++|.
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~  162 (206)
T 2bov_A           88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRA  162 (206)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCCC
Confidence            999999999999999998888887765544689999999999997642  223332222     2234579999999999


Q ss_pred             ChHHHHHHHHHHhhh
Q 030192          165 GLYEGLDWLSNNIAS  179 (181)
Q Consensus       165 gv~~~~~~i~~~~~~  179 (181)
                      |++++|.++.+.+.+
T Consensus       163 gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          163 NVDKVFFDLMREIRA  177 (206)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998765

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.97  E-value=3e-30  Score=178.15  Aligned_cols=161  Identities=19%  Similarity=0.292  Sum_probs=127.0

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ....++|+++|++|+|||||+++|.+..+.. ..++.+..+. .+...  .+.+.+||+||++++...+..+++.+|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            3567999999999999999999999888754 3455554432 23333  368999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||+++++++.....|+..+.......++|+++|+||+|+.+..  ..++.....     +..+++++++||++|.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  169 (187)
T 2a9k_A           95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVD  169 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHH
Confidence            999999999998988888877765544579999999999987532  223333222     2234579999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|+++.+.+.+
T Consensus       170 ~l~~~l~~~i~~  181 (187)
T 2a9k_A          170 KVFFDLMREIRA  181 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998765

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.97  E-value=1.2e-30  Score=182.05  Aligned_cols=163  Identities=17%  Similarity=0.160  Sum_probs=120.7

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccc--eeEEEEEE--CCEEEEEEEcCCCCCccc-chhhcccccc
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRP-LWRHYFQNTQ   86 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~--~~~~~~~~--~~~~~~i~D~~g~~~~~~-~~~~~~~~~d   86 (181)
                      .....++|+++|++|||||||+++|.+.... ...++.+  .....+..  ..+.+.+||++|++++.. ++..+++.+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            3457799999999999999999999754332 2233333  22233333  346889999999988765 6778889999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192           87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  164 (181)
                      ++++|||+++++++..+..|+..+.......++|+++|+||+|+.+..  ..++....     ++..+++++++||++|.
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----a~~~~~~~~e~Sa~~~~  173 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL-----AGTLSCKHIETSAALHH  173 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCEEEEEBTTTTB
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHH-----HHHhCCEEEEEcCCCCC
Confidence            999999999999999999988877654433579999999999997543  22222221     11224578999999999


Q ss_pred             ChHHHHHHHHHHhhhc
Q 030192          165 GLYEGLDWLSNNIASK  180 (181)
Q Consensus       165 gv~~~~~~i~~~~~~~  180 (181)
                      |++++|+++.+.+.++
T Consensus       174 ~v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          174 NTRELFEGAVRQIRLR  189 (195)
T ss_dssp             SHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999987653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.97  E-value=9.8e-31  Score=177.67  Aligned_cols=159  Identities=18%  Similarity=0.342  Sum_probs=124.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ++.++|+++|++|+|||||++++.+..+.. ..++.+..+  ..+...  .+.+.+||+||++++...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            467899999999999999999999887753 456655443  334433  468999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|+|++++.++.....|+..+....  .+.|+++|+||+|+.+..  ..++.....     +..+++++++||++|.|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  155 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVS  155 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Confidence            9999999988888888777665543  478999999999987532  222322211     2234579999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      ++++++.+.+.++
T Consensus       156 ~l~~~l~~~~~~~  168 (168)
T 1z2a_A          156 EVFKYLAEKHLQK  168 (168)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999988754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.97  E-value=7.3e-31  Score=182.37  Aligned_cols=160  Identities=21%  Similarity=0.330  Sum_probs=123.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ...++|+++|++|+|||||+++|.+..+.. ..++.+..+  ..+...  .+.+.+||+||++++...+..+++++|+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            467899999999999999999999888753 345555433  344444  468999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|+|+++++++.....|+..+.... ..++|+++|+||+|+.+...  .++....     .+..+++++++||++|.|++
T Consensus        99 ~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  172 (191)
T 2a5j_A           99 LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAF-----AREHGLIFMETSAKTACNVE  172 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEEECTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence            9999999999988888777765532 25799999999999965322  2222221     12234579999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      ++|+++.+.+.++
T Consensus       173 ~l~~~l~~~i~~~  185 (191)
T 2a5j_A          173 EAFINTAKEIYRK  185 (191)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.97  E-value=8.8e-31  Score=177.53  Aligned_cols=159  Identities=16%  Similarity=0.254  Sum_probs=124.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +.++|+++|++|+|||||++++.++.+.. ..++.+... ..+...  ...+.+||+||++++...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            45899999999999999999999887654 344544332 333343  45699999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +|++++.++.....|+..+.......+.|+++|+||+|+.+...  .++....     .+..+++++++||++|.|++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l  156 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL-----AEEWGCPFMETSAKSKTMVDEL  156 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTSCEEEECTTCHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHH-----HHHhCCCEEEecCCCCcCHHHH
Confidence            99999999999988888877655556899999999999865432  2222111     1122446899999999999999


Q ss_pred             HHHHHHHhhh
Q 030192          170 LDWLSNNIAS  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      ++++.+.+.+
T Consensus       157 ~~~l~~~~~~  166 (167)
T 1kao_A          157 FAEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988765

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.97  E-value=5.3e-30  Score=179.95  Aligned_cols=160  Identities=20%  Similarity=0.358  Sum_probs=126.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +..++|+++|++|+|||||+++|.+..+.. ..++.+..+  ..+...  .+.+.+|||||++++...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            456899999999999999999999988763 456666444  344444  468999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||++++.++.....|+..+.... ..++|+++|+||+|+.+..  ..++.....     +..+++++++||++|.|++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y           86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE  159 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence            9999999999988888776665432 2579999999999997643  222222211     1234568999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      ++|.++.+.+.++
T Consensus       160 ~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          160 DAFLTMARQIKES  172 (206)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.97  E-value=1.3e-30  Score=182.63  Aligned_cols=159  Identities=18%  Similarity=0.353  Sum_probs=124.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ...++|+++|++|+|||||+++|.+..+. ...++.+..+.  .+..  ..+.+.+||+||++++...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            35689999999999999999999998875 34566665543  3333  3578999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||++++.++.....|+..+.... ..++|+++|+||+|+.+...  .++....     .+..+++++++||++|.|++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  159 (203)
T 1zbd_A           86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQL-----ADHLGFEFFEASAKDNINVK  159 (203)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHH-----HHHHTCEEEECBTTTTBSSH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHH-----HHHCCCeEEEEECCCCCCHH
Confidence            9999999999988888776665432 35799999999999976432  2222211     11224479999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|+++.+.+.+
T Consensus       160 ~l~~~l~~~i~~  171 (203)
T 1zbd_A          160 QTFERLVDVICE  171 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.97  E-value=4.6e-31  Score=183.08  Aligned_cols=163  Identities=21%  Similarity=0.341  Sum_probs=122.6

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEECC--EEEEEEEcCCCCCcc-cchhhccccc
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIR-PLWRHYFQNT   85 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~-~~~~~~~~~~   85 (181)
                      ...++.++|+++|++|+|||||+++|.+..+.. ..++.+..+  ..+...+  +.+.+||+||++++. ..+..+++.+
T Consensus        15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (189)
T 1z06_A           15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV   94 (189)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence            444678999999999999999999999888763 456655443  3444443  789999999999888 7888899999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCC
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~  163 (181)
                      |++++|||++++.++.....|+..+.......++|+++|+||+|+.+...  .++... +    .+..+++++++||++|
T Consensus        95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~  169 (189)
T 1z06_A           95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-F----ADTHSMPLFETSAKNP  169 (189)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCCEEECCSSSG
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHH-H----HHHcCCEEEEEeCCcC
Confidence            99999999999999988888888777655456899999999999965432  222211 1    1123446899999999


Q ss_pred             ---CChHHHHHHHHHHhhh
Q 030192          164 ---EGLYEGLDWLSNNIAS  179 (181)
Q Consensus       164 ---~gv~~~~~~i~~~~~~  179 (181)
                         .|++++|.++.+.+.+
T Consensus       170 ~~~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          170 NDNDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             GGGSCHHHHHHHHC-----
T ss_pred             CcccCHHHHHHHHHHHHhh
Confidence               9999999999887754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=5.5e-30  Score=180.55  Aligned_cols=162  Identities=22%  Similarity=0.366  Sum_probs=123.1

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhcccccc
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQ   86 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (181)
                      ......++|+++|++|+|||||+++|.+..+. ...++.+..+  ..+...+  +.+.+|||||++++...+..+++.+|
T Consensus        15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (213)
T 3cph_A           15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM   94 (213)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            33456799999999999999999999988765 4456665443  4455555  78999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      ++++|||++++.++.....|+..+..... .++|+++|+||+|+..... .++.....     +..+++++++||++|.|
T Consensus        95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g  168 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALA-----KELGIPFIESSAKNDDN  168 (213)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTCSSCCSCHHHHHHHH-----HHHTCCEEECBTTTTBS
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCcccccCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence            99999999999888888877766654322 4799999999999954322 22222111     11234689999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030192          166 LYEGLDWLSNNIAS  179 (181)
Q Consensus       166 v~~~~~~i~~~~~~  179 (181)
                      ++++|.++.+.+.+
T Consensus       169 i~~l~~~l~~~~~~  182 (213)
T 3cph_A          169 VNEIFFTLAKLIQE  182 (213)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988765

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.3e-31  Score=186.21  Aligned_cols=160  Identities=19%  Similarity=0.358  Sum_probs=125.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +..+||+++|++|+|||||+++|.+..+.. ..++.+....  .+.  ...+.+.+||+||++++...+..+++.+|+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            467899999999999999999999887653 3455553332  333  36789999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||+++++++.....|+..+... ...++|+++|+||+|+.+...  .++....     .+..+++++++||++|.|++
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  174 (191)
T 3dz8_A          101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLL-----AEQLGFDFFEASAKENISVR  174 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEECBTTTTBSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHH-----HHHcCCeEEEEECCCCCCHH
Confidence            999999999998888877666553 235799999999999865422  2222111     12234579999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      ++|+++.+.+.++
T Consensus       175 ~l~~~l~~~i~~~  187 (191)
T 3dz8_A          175 QAFERLVDAICDK  187 (191)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=5.1e-30  Score=178.41  Aligned_cols=160  Identities=14%  Similarity=0.137  Sum_probs=121.9

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      ...+.++|+++|++|+|||||+++|.+..+.. ..+|.+..+ ..+...  .+.+.+||+||++++...+..+++++|++
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            34577999999999999999999999887764 356655444 233333  47899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCcccCcce
Q 030192           89 IFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHW  153 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~  153 (181)
                      ++|||+++++++.... .|+..+...  ..++|+++|+||+|+.+..              ..++..+     ..+..+.
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~  166 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK-----LAKEIGA  166 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH-----HHHHHTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH-----HHHHcCC
Confidence            9999999999998887 454444332  2479999999999997531              1111111     1111233


Q ss_pred             -EEEEccccCCCChHHHHHHHHHHhhh
Q 030192          154 -YIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       154 -~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                       +++++||++|.|++++|+++.+.+.+
T Consensus       167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          167 CCYVECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence             68999999999999999999988764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=9.9e-31  Score=180.00  Aligned_cols=161  Identities=16%  Similarity=0.179  Sum_probs=110.8

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      ...+.++|+++|++|+|||||++++.+..+.. ..||.+..+.   .+....+.+.+||+||++++...+..+++++|++
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D            4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            34678999999999999999999999887653 3455443221   2344567788999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------------HhHHHhhhCCCcccCcce-EE
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------------AAEITDKLGLHSLRQRHW-YI  155 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~  155 (181)
                      ++|||++++.++......|...+.... .++|+++|+||+|+.+...            .++...     ..+..+. ++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~  157 (182)
T 3bwd_D           84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-----LKKLIGAPAY  157 (182)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-----HHHHHTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-----HHHHcCCCEE
Confidence            999999999999888743444433322 3799999999999865321            111111     1112232 78


Q ss_pred             EEccccCCCChHHHHHHHHHHhhh
Q 030192          156 QSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       156 ~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      +++||++|.|++++|+++.+.+.+
T Consensus       158 ~~~Sa~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          158 IECSSKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999988764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.97  E-value=5.6e-30  Score=179.77  Aligned_cols=162  Identities=17%  Similarity=0.253  Sum_probs=124.4

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE--EEE--CCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      .+..++|+++|++|+|||||+++|.+..+. ...++.+.....  +..  ..+.+.+||+||++++...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            356799999999999999999999988865 345666654433  333  347899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  164 (181)
                      ++|+|++++.++.....|+..+....   ...++|+++|+||+|+.+... .++......    ...+++++++||++|.
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~  160 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI  160 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence            99999999988888877776665432   124689999999999975432 223322211    0234578999999999


Q ss_pred             ChHHHHHHHHHHhhh
Q 030192          165 GLYEGLDWLSNNIAS  179 (181)
Q Consensus       165 gv~~~~~~i~~~~~~  179 (181)
                      |++++|+++.+.+.+
T Consensus       161 gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          161 NVEQAFQTIARNALK  175 (207)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.7e-30  Score=179.71  Aligned_cols=161  Identities=19%  Similarity=0.321  Sum_probs=120.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ...++|+++|++|+|||||+++|.+..+. ...++.+...  ..+...  .+.+.+||+||++++...+..+++.+|+++
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            56789999999999999999999988775 3456665443  344444  368999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||++++.++.....|+..+.. ....++|+++|+||+|+.+...  .++.......    ..+++++++||++|.|++
T Consensus       104 lV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~~SA~~g~gi~  178 (192)
T 2il1_A          104 LVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEKFAQQ----ITGMRFCEASAKDNFNVD  178 (192)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT----STTCEEEECBTTTTBSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHHh----cCCCeEEEEeCCCCCCHH
Confidence            99999999898888776555433 2235799999999999875432  2222221111    124579999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      ++|+++.+.+.++
T Consensus       179 ~l~~~l~~~i~~~  191 (192)
T 2il1_A          179 EIFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988765

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.97  E-value=2.9e-30  Score=177.05  Aligned_cols=159  Identities=18%  Similarity=0.367  Sum_probs=124.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      .+.++|+++|++|+|||||++++.+..+.. ..++.+...  ..+...+  +.+.+||+||++++...+..+++++|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            456999999999999999999999887653 456665443  3344443  68999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|+|++++.++.....|+..+.... ..++|+++|+||+|+.+...  .++....     ++..+++++++||++|.|++
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  165 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERK-----AKELNVMFIETSAKAGYNVK  165 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEEEBTTTTBSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Confidence            9999999988888888877665432 25799999999999875432  2222221     12234579999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++++++.+.+.+
T Consensus       166 ~l~~~l~~~~~~  177 (179)
T 2y8e_A          166 QLFRRVAAALPG  177 (179)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHhh
Confidence            999999988764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.97  E-value=2.2e-30  Score=178.94  Aligned_cols=161  Identities=16%  Similarity=0.198  Sum_probs=120.2

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ....++|+++|++|+|||||+++|.+..+.. +.||.+..+. .+.  ...+.+.+||+||++++...+..+++.+|+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            3567999999999999999999999988764 4566655442 222  24578999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCcccCcc-eE
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRH-WY  154 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~  154 (181)
                      +|||+++++++......|...+.... .++|+++|+||+|+.+.              ...++..+     ..+..+ .+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~  157 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-----MAKQIGAAT  157 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHHTCSE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH-----HHHHcCCcE
Confidence            99999999999888443333333221 47999999999998742              11111111     111122 47


Q ss_pred             EEEcccc-CCCChHHHHHHHHHHhhhc
Q 030192          155 IQSTCAT-SGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       155 ~~~~S~~-~~~gv~~~~~~i~~~~~~~  180 (181)
                      ++++||+ ++.|++++|+.+.+.+.++
T Consensus       158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~k  184 (184)
T 1m7b_A          158 YIECSALQSENSVRDIFHVATLACVNK  184 (184)
T ss_dssp             EEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred             EEEeeecCCCcCHHHHHHHHHHHHhcC
Confidence            9999999 6899999999999988764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.97  E-value=3.3e-30  Score=180.26  Aligned_cols=159  Identities=20%  Similarity=0.368  Sum_probs=124.8

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEECC------------------------------
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYKN------------------------------   60 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~~~------------------------------   60 (181)
                      .+..++|+++|++|+|||||+++|.+..+.. ..++.+..+.  .+...+                              
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            3567999999999999999999999987763 4566654443  233222                              


Q ss_pred             ---------EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           61 ---------ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        61 ---------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                               ..+.+||+||++++...+..+++.+|++++|+|++++.++.....|+..+...   .++|+++|+||+|..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcc
Confidence                     88999999999999999999999999999999999999998888887777654   249999999999943


Q ss_pred             CC-CCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192          132 NA-MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       132 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      .. ...+++.+..     +..+++++++||++|.|++++|+++.+.+.++
T Consensus       161 ~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          161 KFQVDILEVQKYA-----QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             -CCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            22 2333333322     22345899999999999999999999987654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.97  E-value=1.1e-29  Score=171.78  Aligned_cols=160  Identities=19%  Similarity=0.291  Sum_probs=123.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +.++|+++|++|+|||||++++.+..+.. ..++.+... ..+..  ..+.+.+||+||++++...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            35799999999999999999999887653 344544433 22333  346789999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      +|++++.++.....|+..+.......++|+++|+||+|+.+... .++..+..     +..+++++++|+++|.|+++++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~  156 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA-----RSYGIPYIETSAKTRQGVEDAF  156 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEEECTTTCTTHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHH
Confidence            99999999888888777765544335799999999999876332 22222211     1223468999999999999999


Q ss_pred             HHHHHHhhhc
Q 030192          171 DWLSNNIASK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      +++.+.+.++
T Consensus       157 ~~l~~~~~~~  166 (166)
T 2ce2_X          157 YTLVREIRQH  166 (166)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999988653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.97  E-value=2.6e-30  Score=180.96  Aligned_cols=159  Identities=21%  Similarity=0.343  Sum_probs=118.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ++.++|+++|++|+|||||+++|.+..+.. ..++.+..+  ..+...+  +.+.+||+||++++...+..+++.+|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            456899999999999999999999887753 455555433  3444444  78999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||++++.++.....|+..+..... .++|+++|+||+|+.+...  ..+....     ++..+++++++||++|.|++
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~SA~~g~gi~  176 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRF-----AQENELMFLETSALTGENVE  176 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEECTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence            99999999999888888776654322 5799999999999865322  2222221     12334579999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|+++.+.+.+
T Consensus       177 ~l~~~l~~~i~~  188 (200)
T 2o52_A          177 EAFLKCARTILN  188 (200)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.97  E-value=5e-31  Score=182.75  Aligned_cols=161  Identities=15%  Similarity=0.153  Sum_probs=119.6

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ..+.++|+++|++|+|||||+++|.+..+.. +.+|.+..+. .+..  ..+.+.+|||||++++... ..+++.+|+++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            4577999999999999999999999988664 4566665542 2233  4578999999999988875 66889999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccc-cCCC
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCA-TSGE  164 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~~  164 (181)
                      +|||+++++++.....|+..+.....  ..++|+++|+||+|+.+..  ..++..+.     ++..+++++++|| ++|.
T Consensus        97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~g~  171 (187)
T 3c5c_A           97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVAL-----AGRFGCLFFEVSACLDFE  171 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCEEEECCSSSCSH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHH-----HHHcCCcEEEEeecCccc
Confidence            99999999999998888777655321  1478999999999986532  22222211     1223457999999 8999


Q ss_pred             ChHHHHHHHHHHhhhc
Q 030192          165 GLYEGLDWLSNNIASK  180 (181)
Q Consensus       165 gv~~~~~~i~~~~~~~  180 (181)
                      |++++|+.+.+.+.++
T Consensus       172 gv~~lf~~l~~~i~~~  187 (187)
T 3c5c_A          172 HVQHVFHEAVREARRE  187 (187)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             cHHHHHHHHHHHHhhC
Confidence            9999999999988653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.97  E-value=2.3e-30  Score=183.17  Aligned_cols=160  Identities=21%  Similarity=0.422  Sum_probs=124.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--C----------CEEEEEEEcCCCCCcccchh
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--K----------NISFTVWDVGGQDKIRPLWR   79 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~----------~~~~~i~D~~g~~~~~~~~~   79 (181)
                      ++.++|+++|++|+|||||+++|.+..+.. ..++.+..+.  .+..  .          .+.+.+|||||++++...+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            456899999999999999999999887753 3556554432  2322  2          57899999999999999999


Q ss_pred             hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEE
Q 030192           80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS  157 (181)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      .+++.+|++++|||++++.++.....|+..+.......++|+++|+||+|+.+...  .++.....     +..++++++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~  177 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFE  177 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEE
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEE
Confidence            99999999999999999999988888777665544436799999999999975322  22222211     122346899


Q ss_pred             ccccCCCChHHHHHHHHHHhhh
Q 030192          158 TCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       158 ~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      +||++|.|++++|+++.+.+.+
T Consensus       178 ~Sa~~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          178 TSAATGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999988765

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.97  E-value=1.8e-30  Score=183.85  Aligned_cols=162  Identities=22%  Similarity=0.313  Sum_probs=123.6

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEEE----CC-EEEEEEEcCCCCCcccchhhccccccE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY----KN-ISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~----~~-~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      ....++|+++|++|+|||||+++|.+..+.. ..++.+........    .. +.+.+|||||++++...+..+++.+|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            3567999999999999999999999887653 35666655544332    12 789999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      +++|+|++++.++.....|+..+..... .++|+++|+||+|+.+... ..+....+    .+..+++++++||++|.|+
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gv  162 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIKNRQKISKKLVMEV----LKGKNYEYFEISAKTAHNF  162 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC----CCHHHHHHH----TTTCCCEEEEEBTTTTBTT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccCHHHHHHH----HHHcCCcEEEEecCCCCCH
Confidence            9999999999998888877666544322 4689999999999976422 12222222    2234568999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030192          167 YEGLDWLSNNIASK  180 (181)
Q Consensus       167 ~~~~~~i~~~~~~~  180 (181)
                      +++|.++.+.+.++
T Consensus       163 ~~l~~~l~~~~~~~  176 (218)
T 4djt_A          163 GLPFLHLARIFTGR  176 (218)
T ss_dssp             THHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999988653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.5e-30  Score=181.43  Aligned_cols=160  Identities=21%  Similarity=0.358  Sum_probs=120.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ...++|+++|++|+|||||+++|.+..+. ...++.+..+  ..+...+  +.+.+|||||++++...+..+++.+|+++
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            56689999999999999999999998876 3456655443  3455554  78999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||++++.++.....|+..+.... ..++|+++|+||+|+.+...  .++....     ++..+++++++||++|.|++
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  164 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTF-----AQENQLLFTETSALNSENVD  164 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCCC-CCCHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence            9999999999988888777665432 25799999999999875322  2222221     12234579999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      ++|+++.+.+.++
T Consensus       165 ~l~~~l~~~i~~~  177 (223)
T 3cpj_B          165 KAFEELINTIYQK  177 (223)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=4.3e-30  Score=180.39  Aligned_cols=164  Identities=18%  Similarity=0.228  Sum_probs=118.8

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-E--EEECCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      ...+.++|+++|++|+|||||++++.++.+.. ..++.+..+. .  +....+.+.+|||||++++...+..+++++|++
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            34678999999999999999999999887763 3555543332 2  233556788999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------cccCcc-eEEEEc
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRQRH-WYIQST  158 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~  158 (181)
                      ++|||++++.++......|...+.... .++|+++|+||+|+.+.....+........         ..+..+ .+++++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            999999999999888744444444322 579999999999987643222111111110         111122 369999


Q ss_pred             cccCCCChHHHHHHHHHHh
Q 030192          159 CATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       159 S~~~~~gv~~~~~~i~~~~  177 (181)
                      ||++|.|++++|+++.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998865

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=3.5e-30  Score=175.44  Aligned_cols=160  Identities=16%  Similarity=0.234  Sum_probs=121.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE-EEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +.++|+++|++|+|||||++++.+..+. ...++.+..+.. +..  ..+.+.+||+||++++...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            4689999999999999999999988765 345555544432 222  346899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      +|++++.++.....|+..+.... ...++|+++|+||+|+.+....  .+...     ..+..+++++++||++|.|+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~  156 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-----LARTWKCAFMETSAKLNHNVKE  156 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTBSHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH-----HHHHhCCeEEEecCCCCcCHHH
Confidence            99999988888887776654421 2247899999999998754322  12111     1122345799999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030192          169 GLDWLSNNIASK  180 (181)
Q Consensus       169 ~~~~i~~~~~~~  180 (181)
                      +++++.+.+.++
T Consensus       157 l~~~l~~~~~~~  168 (172)
T 2erx_A          157 LFQELLNLEKRR  168 (172)
T ss_dssp             HHHHHHHTCCSS
T ss_pred             HHHHHHHHHhhh
Confidence            999999887654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.1e-29  Score=177.17  Aligned_cols=168  Identities=17%  Similarity=0.246  Sum_probs=120.6

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhccccccE
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      ......++|+++|++|+|||||+++|.+..+.. ..|+.+..+ ..+...  .+.+.+|||||++++...+..+++++|+
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   99 (207)
T 2fv8_A           20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (207)
T ss_dssp             GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred             cccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence            334567899999999999999999999988764 345555444 223443  4689999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------cccCcce-EEEE
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRQRHW-YIQS  157 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~  157 (181)
                      +++|||+++++++......|...+.... .++|+++|+||+|+.+.....+....+...         ..+..+. ++++
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (207)
T 2fv8_A          100 ILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE  178 (207)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence            9999999999999888554444444322 479999999999987542211111111100         1111233 7899


Q ss_pred             ccccCCCChHHHHHHHHHHhhhc
Q 030192          158 TCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       158 ~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      +||++|.|++++|+++.+.+.++
T Consensus       179 ~SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          179 CSAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHSC
T ss_pred             eeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999987653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=2.5e-30  Score=183.60  Aligned_cols=161  Identities=21%  Similarity=0.357  Sum_probs=128.0

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEEE----CCEEEEEEEcCCCCCcccchhhccccccE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .....++|+++|++|+|||||+++++.+.+. ...++.+.+......    ..+.+.+|||||++++...+..+++++|+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            4467799999999999999999997766654 345666655543322    45789999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +++|||++++.++.....|+..+....  .++|+++|+||+|+.+.....+     .....+..+++++++||++|.|++
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gi~  163 (221)
T 3gj0_A           91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFE  163 (221)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGG-----GCCHHHHHTCEEEECBGGGTBTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHH-----HHHHHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999988888877776642  4789999999999976432221     122233445689999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030192          168 EGLDWLSNNIASK  180 (181)
Q Consensus       168 ~~~~~i~~~~~~~  180 (181)
                      ++|.++.+.+.++
T Consensus       164 ~l~~~l~~~l~~~  176 (221)
T 3gj0_A          164 KPFLWLARKLIGD  176 (221)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999987653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.97  E-value=1.8e-29  Score=176.50  Aligned_cols=160  Identities=16%  Similarity=0.150  Sum_probs=115.2

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEECC--EEEEEEEcCCCCCcccchhhccccccEE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      .....++|+++|++|+|||||++++.+..+.. ..+|.+..+. .+...+  +.+.+||+||++++...+..+++++|++
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF   95 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence            44678999999999999999999999888653 3566654442 344444  6788999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCcccCcce
Q 030192           89 IFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHW  153 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~  153 (181)
                      ++|||+++++++.... .|+..+... . .++|+++|+||+|+.+..              ..++...     ..+..+.
T Consensus        96 i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~  168 (201)
T 2q3h_A           96 LLCFSVVSPSSFQNVSEKWVPEIRCH-C-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL-----LAEEIKA  168 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-C-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHHTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH-----HHHhcCC
Confidence            9999999999998887 455444332 1 479999999999986421              1111111     1111233


Q ss_pred             -EEEEccccCCCChHHHHHHHHHHhhh
Q 030192          154 -YIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       154 -~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                       +++++||++|.|++++|+++.+.+.+
T Consensus       169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          169 ASYIECSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence             78999999999999999999988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.97  E-value=9.4e-30  Score=174.92  Aligned_cols=163  Identities=15%  Similarity=0.251  Sum_probs=113.0

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEE---CCEEEEEEEcCCCCCcccchhhccccccE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .+..++|+++|++|+|||||++++.+..+. ...++.+...  ..+..   ....+.+||+||++++...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            356799999999999999999999988765 3455555333  33333   35789999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcccCcceEEEEcccc
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCAT  161 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~S~~  161 (181)
                      +++|+|++++.++.....|+..+....   ...++|+++|+||+|+.+..   ..++......    ...+.+++++||+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~  160 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK  160 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence            999999999999888888777665432   23578999999999985431   2222222211    0234568999999


Q ss_pred             CCCChHHHHHHHHHHhhhc
Q 030192          162 SGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~~~~  180 (181)
                      +|.|++++|+++.+.+.++
T Consensus       161 ~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          161 NAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999987653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.97  E-value=3.6e-30  Score=181.56  Aligned_cols=160  Identities=16%  Similarity=0.182  Sum_probs=119.8

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ....++|+++|++|+|||||+++|.++.+.. +.||.+..+. .+..  ..+.+.+|||||++++...+..+++++|+++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            3567999999999999999999999888753 4566664442 2333  4479999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----------CHhHHHhhhCCCcccCcc-eEEEEc
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----------NAAEITDKLGLHSLRQRH-WYIQST  158 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~  158 (181)
                      +|||+++++++......|...+.... .++|+++|+||+|+.+..          ..++....     .+..+ .+++++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~  159 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL-----RKQIGAAAYIEC  159 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH-----HHHHTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH-----HHHcCCceEEEc
Confidence            99999999999888743333333222 479999999999986532          11111111     11122 278999


Q ss_pred             cccCCCChHHHHHHHHHHhhh
Q 030192          159 CATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       159 S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      ||++|.|++++|+++.+.+.+
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~  180 (212)
T 2j0v_A          160 SSKTQQNVKAVFDTAIKVVLQ  180 (212)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999998765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.1e-29  Score=179.11  Aligned_cols=160  Identities=15%  Similarity=0.162  Sum_probs=117.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC--cccccCccceeE--EEEEEC--CEEEEEEEcCCCCC-cccchhhccccccE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNV--ETVEYK--NISFTVWDVGGQDK-IRPLWRHYFQNTQG   87 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~-~~~~~~~~~~~~d~   87 (181)
                      ...+||+++|++|+|||||+++|.+..  +....++++.+.  ..+...  .+.+.+|||+|.++ +......+++.+|+
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            456899999999999999999998643  334334444332  334443  45778999999876 45566777889999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      +++|||+++++++.....|+..+.......++|+++|+||+|+.+...  .++...     .+...++++++|||++|.|
T Consensus       115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~-----~a~~~~~~~~e~SAk~g~~  189 (211)
T 2g3y_A          115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-----CAVVFDCKFIETSAAVQHN  189 (211)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH-----HHHHcCCEEEEEeCCCCCC
Confidence            999999999999999988887765543335799999999999975322  221111     1122345799999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030192          166 LYEGLDWLSNNIAS  179 (181)
Q Consensus       166 v~~~~~~i~~~~~~  179 (181)
                      ++++|+++.+.+..
T Consensus       190 v~elf~~l~~~i~~  203 (211)
T 2g3y_A          190 VKELFEGIVRQVRL  203 (211)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.97  E-value=2.4e-29  Score=176.12  Aligned_cols=165  Identities=17%  Similarity=0.245  Sum_probs=122.3

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      +...++|+++|++|+|||||++++.+..+.. +.|+.+..+ ..+...  .+.+.+||+||++++...+..+++++|+++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            3567899999999999999999999888763 355555443 233443  468999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcccCcce-EEEEcc
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRHW-YIQSTC  159 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S  159 (181)
                      +|||+++++++......|...+.... .++|+++|+||+|+.+.....+......         ...++..+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999888555555444322 4799999999999876421111111000         011112233 789999


Q ss_pred             ccCCCChHHHHHHHHHHhhh
Q 030192          160 ATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       160 ~~~~~gv~~~~~~i~~~~~~  179 (181)
                      |++|.|++++|+++.+.+.+
T Consensus       181 A~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999988753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.97  E-value=2.4e-29  Score=174.40  Aligned_cols=163  Identities=18%  Similarity=0.289  Sum_probs=113.4

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhccccccE
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      ....+.++|+++|++|+|||||+++|.+..+... .++.+..+ ..+...  .+.+.+||+||++++...+..+++.+|+
T Consensus        16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            3445678999999999999999999998876533 44444333 233333  4679999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      +++|||++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..+..     +..+++++++||++|.|+
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi  170 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA-----KSYGIPFIETSAKTRQGV  170 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH-----HHcCCeEEEEeCCCCCCH
Confidence            99999999998988888777666554333579999999999987632 222222211     122346899999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030192          167 YEGLDWLSNNIAS  179 (181)
Q Consensus       167 ~~~~~~i~~~~~~  179 (181)
                      +++++++.+.+.+
T Consensus       171 ~~l~~~l~~~~~~  183 (190)
T 3con_A          171 EDAFYTLVREIRQ  183 (190)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.96  E-value=1.5e-29  Score=174.51  Aligned_cols=165  Identities=18%  Similarity=0.204  Sum_probs=120.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      .+.++|+++|++|+|||||++++.++.+.. +.++.+..+. .+..  ..+.+.+||+||++++...+..+++.+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            457899999999999999999999887653 3555554332 2333  34678899999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcccCcce-EEEEccc
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRHW-YIQSTCA  160 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S~  160 (181)
                      |||++++.++......|...+.... .++|+++|+||+|+.+.....+......         ....+..+. +++++||
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence            9999999999888743433333222 3799999999999865321111111000         001112233 7999999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030192          161 TSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~~  180 (181)
                      ++|.|++++|+++.+.+.+.
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          162 LTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHSCC
T ss_pred             CCccCHHHHHHHHHHHHhcc
Confidence            99999999999999988653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.96  E-value=1.7e-29  Score=177.49  Aligned_cols=159  Identities=15%  Similarity=0.182  Sum_probs=120.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      +..++|+++|++|+|||||+++|.+..+.. +.||.+..+. .+.  ...+.+.+|||||++++...+..+++++|++++
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il  105 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI  105 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence            567999999999999999999999988764 3566665442 232  245789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCcccCcc-eE
Q 030192           91 VVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRH-WY  154 (181)
Q Consensus        91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~  154 (181)
                      |||+++++++.... .|+..+...  ..+.|+++|+||+|+.+.              ...++...     ..+..+ .+
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~  178 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-----MAKQIGAAT  178 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHHTCSE
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH-----HHHHcCCCE
Confidence            99999999998884 454444332  147999999999998642              11111111     111122 47


Q ss_pred             EEEcccc-CCCChHHHHHHHHHHhhhc
Q 030192          155 IQSTCAT-SGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       155 ~~~~S~~-~~~gv~~~~~~i~~~~~~~  180 (181)
                      ++++||+ ++.|++++|+.+.+.+.++
T Consensus       179 ~~e~SAk~~~~gv~~lf~~l~~~~l~~  205 (205)
T 1gwn_A          179 YIECSALQSENSVRDIFHVATLACVNK  205 (205)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEeeeccCCcCHHHHHHHHHHHHhhC
Confidence            9999999 6899999999999988764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.3e-29  Score=176.83  Aligned_cols=161  Identities=15%  Similarity=0.210  Sum_probs=123.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE-EEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ...++|+++|++|+|||||+++|.+..+.. ..++.+..+.. +..  ..+.+.+|||||++++...+..+++.+|++++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL   85 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence            567999999999999999999999887653 45565544432 222  34689999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |||++++.++.....|+..+.... ...++|+++|+||+|+.+... .++....     .+..+++++++||++|.|+++
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~  160 (199)
T 2gf0_A           86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAV-----AQEWKCAFMETSAKMNYNVKE  160 (199)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHH-----HHHHTCEEEECBTTTTBSHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHH-----HHHhCCeEEEEecCCCCCHHH
Confidence            999999988888877765544321 124689999999999976332 2222211     122345799999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030192          169 GLDWLSNNIASK  180 (181)
Q Consensus       169 ~~~~i~~~~~~~  180 (181)
                      +|+++.+.+.++
T Consensus       161 l~~~l~~~~~~~  172 (199)
T 2gf0_A          161 LFQELLTLETRR  172 (199)
T ss_dssp             HHHHHHHHCSSS
T ss_pred             HHHHHHHHHhhh
Confidence            999999987654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.96  E-value=1.8e-29  Score=178.41  Aligned_cols=165  Identities=16%  Similarity=0.218  Sum_probs=103.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      .+.++|+++|++|+|||||+++|.+..+.. ..++.+..+ ..+..  ..+.+.+|||||++++...+..+++++|++++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            467999999999999999999999887753 345554433 22333  34689999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcccCcce-EEEEccc
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRHW-YIQSTCA  160 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S~  160 (181)
                      |||++++.++......|...+.... .++|+++|+||+|+.+.....+......         ....+..+. +++++||
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  190 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA  190 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence            9999999999888744444333222 4789999999999976422111111000         011112233 7999999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030192          161 TSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~~  180 (181)
                      ++|.|++++|+++.+.+.+.
T Consensus       191 ~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          191 RLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             TTTBSHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999987653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=6.5e-30  Score=178.33  Aligned_cols=164  Identities=20%  Similarity=0.277  Sum_probs=114.0

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccC----ccceeEEEEE-ECCEEEEEEEcCCCCCcccch---hhcc
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVE-YKNISFTVWDVGGQDKIRPLW---RHYF   82 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~~   82 (181)
                      ..+.++.+||+++|++|||||||++++.+........    +.......+. ...+.+.+||+||++++....   ..++
T Consensus        14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   93 (196)
T 3llu_A           14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF   93 (196)
T ss_dssp             ------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence            3455788999999999999999999888754332211    1112122222 456899999999999987776   7899


Q ss_pred             ccccEEEEEEECCCc--ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhh----hCCCcccCcc
Q 030192           83 QNTQGLIFVVDSNDR--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDK----LGLHSLRQRH  152 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~----~~~~~~~~~~  152 (181)
                      +++|++++|||++++  +++.....|+......  ..++|+++|+||+|+.+...    ..++...    +........+
T Consensus        94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (196)
T 3llu_A           94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH  171 (196)
T ss_dssp             HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence            999999999999987  5566666666655321  25799999999999876321    1122111    1111222567


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHh
Q 030192          153 WYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       153 ~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      ++++++||++ .|++++|..+++.+
T Consensus       172 ~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          172 LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cceEEEEech-hhHHHHHHHHHHHh
Confidence            8899999999 99999999999876

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.96  E-value=4e-30  Score=180.45  Aligned_cols=160  Identities=16%  Similarity=0.196  Sum_probs=93.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC--Ccc-cccCcccee--EEEEEEC----CEEEEEEEcCCCCCcccchhhccccc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFN--VETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNT   85 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~-~~~~~~~~~--~~~~~~~----~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (181)
                      ...++|+++|++|+|||||+++|.+.  .+. ...+|.+..  ...+...    .+.+.+||+||++++...+..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            56789999999999999999999988  555 345666533  3345444    57999999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCC-CC--CHhHHHhhhCCCcccCcceEEEEccc
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPN-AM--NAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      |++++|||++++.++.....|+..+.....  ..++|+++|+||+|+.+ ..  ..++.....     +..+++++++||
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa  172 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----TTNTLDFFDVSA  172 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----HHTTCEEEECCC
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----HHcCCEEEEecc
Confidence            999999999999999988888777765432  24799999999999976 22  223322221     123457999999


Q ss_pred             cC-CCChHHHHHHHHHHhhh
Q 030192          161 TS-GEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       161 ~~-~~gv~~~~~~i~~~~~~  179 (181)
                      ++ |.|++++|+++.+.+.+
T Consensus       173 ~~~~~gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          173 NPPGKDADAPFLSIATTFYR  192 (208)
T ss_dssp             -------CHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHH
Confidence            99 99999999999987764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.96  E-value=4.4e-30  Score=179.55  Aligned_cols=157  Identities=24%  Similarity=0.431  Sum_probs=117.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccc--eeEEEEEECC--EEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~--~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ...++|+++|++|+|||||+++|.+..+.. ..++.+  .....+...+  +.+.+||+||++++...+..+++++|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            456899999999999999999999887653 344444  3344455544  78999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  164 (181)
                      +|||++++.++.....|+..+.... ..++|+++|+||+|+.+..     ..+++...+        +++++++||++|.
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~vSA~~g~  181 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNAT  181 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT--------TCCBCCCCC---H
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence            9999999999999988777765543 3579999999999986542     223333333        3458899999999


Q ss_pred             ChHHHHHHHHHHhhhc
Q 030192          165 GLYEGLDWLSNNIASK  180 (181)
Q Consensus       165 gv~~~~~~i~~~~~~~  180 (181)
                      |++++|+++.+.+.++
T Consensus       182 gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          182 NVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             HHHHHHHHHTTTTTTT
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988765

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.96  E-value=8.7e-29  Score=172.21  Aligned_cols=160  Identities=15%  Similarity=0.153  Sum_probs=113.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC--cccccCccceeE--EEEEEC--CEEEEEEEcCCCCC-cccchhhccccccE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNV--ETVEYK--NISFTVWDVGGQDK-IRPLWRHYFQNTQG   87 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~-~~~~~~~~~~~~d~   87 (181)
                      ...++|+++|++|+|||||+++|.+..  +.+..++++.+.  ..+..+  .+.+.+|||+|.+. +......+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            456899999999999999999998633  333333444332  334443  45778999999876 45566778888999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      +++|||+++++++.....|+..+.......++|+++|+||+|+.+...  .++...     .....++++++|||++|.|
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~-----~a~~~~~~~~e~SA~~g~~  158 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRA-----XAVVFDXKFIETSAAVQHN  158 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHH-----HHHHhCCceEEeccccCCC
Confidence            999999999999999888877665433335799999999999864322  221111     1112344789999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030192          166 LYEGLDWLSNNIAS  179 (181)
Q Consensus       166 v~~~~~~i~~~~~~  179 (181)
                      ++++|+++.+.+..
T Consensus       159 v~~lf~~l~~~~~~  172 (192)
T 2cjw_A          159 VKELFEGIVRQVRL  172 (192)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987743

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=1.6e-27  Score=163.37  Aligned_cols=160  Identities=19%  Similarity=0.184  Sum_probs=119.4

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcccc-cC--ccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      .++.++|+++|++|+|||||++++.+..+... .+  +.......+...+..+.+|||||++++...+..++..+|++++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL   84 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence            46789999999999999999999998876532 33  3334445567788899999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC--CcccCcc--eEEEEccccCCCCh
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--HSLRQRH--WYIQSTCATSGEGL  166 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~S~~~~~gv  166 (181)
                      |+|++++...... ..+.....    .++|+++|+||+|+.+. ..+++...+..  ...+..+  .+++++||++|.|+
T Consensus        85 v~d~~~~~~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  158 (178)
T 2lkc_A           85 VVAADDGVMPQTV-EAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL  158 (178)
T ss_dssp             EEETTCCCCHHHH-HHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred             EEECCCCCcHHHH-HHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence            9999875433222 23333322    47899999999999764 23333333321  1122233  78999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030192          167 YEGLDWLSNNIAS  179 (181)
Q Consensus       167 ~~~~~~i~~~~~~  179 (181)
                      +++|+++.+.+..
T Consensus       159 ~~l~~~l~~~~~~  171 (178)
T 2lkc_A          159 DHLLEMILLVSEM  171 (178)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999987654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=1.9e-29  Score=174.32  Aligned_cols=161  Identities=18%  Similarity=0.279  Sum_probs=114.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcC--Ccc-cccCccceeEEEEE-------ECCEEEEEEEcCCCCCcccchhhcccccc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVETVE-------YKNISFTVWDVGGQDKIRPLWRHYFQNTQ   86 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~--~~~-~~~~~~~~~~~~~~-------~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (181)
                      .++|+++|++|||||||++++.+.  .+. .+.+|.+..+....       ...+.+.+|||+|++++...+..++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  333 34677776654432       24678999999999999988899999999


Q ss_pred             EEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce----EEEEcccc
Q 030192           87 GLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW----YIQSTCAT  161 (181)
Q Consensus        87 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~S~~  161 (181)
                      ++++|||++++ .++.....|+..+....  .++|+++|+||+|+.+.....+..........+..++    .++++||+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT  159 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence            99999999987 46877878877665432  4789999999999875432211111111111222233    48999999


Q ss_pred             CCC-ChHHHHHHHHHHhhh
Q 030192          162 SGE-GLYEGLDWLSNNIAS  179 (181)
Q Consensus       162 ~~~-gv~~~~~~i~~~~~~  179 (181)
                      +|. |++++++.+.+.+.+
T Consensus       160 ~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          160 EESDALAKLRKTIINESLN  178 (184)
T ss_dssp             SCCHHHHHHHHHHHHHHHC
T ss_pred             cCchhHHHHHHHHHHHHhc
Confidence            997 999999999887754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=8.5e-31  Score=183.81  Aligned_cols=165  Identities=19%  Similarity=0.248  Sum_probs=123.1

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccE
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      +..++.++|+++|++|+|||||+++|.++.+.. ..++.+..+.   .+....+.+.+|||||++++...+..+++++|+
T Consensus        25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 3th5_A           25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV  104 (204)
Confidence            444688999999999999999999999877653 3444443221   234456788899999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh---------HHHhhhCCCcccCcce-EEEE
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---------EITDKLGLHSLRQRHW-YIQS  157 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~  157 (181)
                      +++|||++++.++......|...+.... .++|+++|+||+|+.+.....         .+........++..+. ++++
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  183 (204)
T 3th5_A          105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  183 (204)
Confidence            9999999999999888744444444322 379999999999997532111         1111222233344455 7899


Q ss_pred             ccccCCCChHHHHHHHHHHh
Q 030192          158 TCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       158 ~S~~~~~gv~~~~~~i~~~~  177 (181)
                      +||++|.|++++|+++.+.+
T Consensus       184 vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          184 CSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            99999999999999998765

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=9.6e-28  Score=171.09  Aligned_cols=169  Identities=14%  Similarity=0.121  Sum_probs=112.9

Q ss_pred             HHhhhc--ccccEEEEEcCCCCChHHHHhhHhcCCccc-cc--CccceeEEEEEECCEEEEEEEcCCCC------Cc---
Q 030192            9 FSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TI--PTIGFNVETVEYKNISFTVWDVGGQD------KI---   74 (181)
Q Consensus         9 ~~~~~~--~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~i~D~~g~~------~~---   74 (181)
                      ..+++.  .+.++|+++|++|+|||||+++|.+..+.. ..  .+.......+......+.+|||||..      +.   
T Consensus        19 ~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~   98 (228)
T 2qu8_A           19 FQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIE   98 (228)
T ss_dssp             ---CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHH
T ss_pred             eccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHH
Confidence            345554  578999999999999999999999987652 22  24444455566678999999999983      21   


Q ss_pred             ccchhhccccccEEEEEEECCCcccHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcc
Q 030192           75 RPLWRHYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH  152 (181)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  152 (181)
                      ...+..++..+|++++|+|++++.++.  ....++..+...  ..++|+++|+||+|+.+...................+
T Consensus        99 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  176 (228)
T 2qu8_A           99 MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVK  176 (228)
T ss_dssp             HHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcC
Confidence            111234467889999999999887764  233444444332  2379999999999997643322111111111112223


Q ss_pred             --eEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          153 --WYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       153 --~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                        ++++++||++|.|++++|+++.+.+.+
T Consensus       177 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          177 NPIKFSSFSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             SCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence              689999999999999999999988764

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.95  E-value=8.5e-29  Score=182.92  Aligned_cols=157  Identities=18%  Similarity=0.195  Sum_probs=116.9

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCccc----ccCccceeEEEEEECCEEEEEEEcCCCCCccc---chhhccccccEEEEE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP---LWRHYFQNTQGLIFV   91 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~~i~v   91 (181)
                      ||+++|+.|+|||||++++.++.+..    ..||.+..+..+ ...+++++|||+|+++|..   .+..++++++++++|
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV   79 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV   79 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence            68999999999999999987665432    467888877666 3568999999999999975   358899999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCccc----CcceEEEEcccc
Q 030192           92 VDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLR----QRHWYIQSTCAT  161 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~S~~  161 (181)
                      ||++++  +.+...||..++..  ...+++|+++++||+|+.+...    .+++.+......++    +.++.+++|||+
T Consensus        80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk  157 (331)
T 3r7w_B           80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF  157 (331)
T ss_dssp             CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred             EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence            999987  44445555443321  1125799999999999976422    12333333333333    367899999999


Q ss_pred             CCCChHHHHHHHHHHhhh
Q 030192          162 SGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~~~  179 (181)
                      + .+|.++|..+++.+..
T Consensus       158 d-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          158 D-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             S-SHHHHHHHHHHTTSST
T ss_pred             C-CcHHHHHHHHHHHHHh
Confidence            8 5899999999987654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=4.8e-28  Score=168.38  Aligned_cols=159  Identities=14%  Similarity=0.129  Sum_probs=109.0

Q ss_pred             HhhhcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCcccee--EEEEEECCEEEEEEEcCC----------CCCccc
Q 030192           10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKNISFTVWDVGG----------QDKIRP   76 (181)
Q Consensus        10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~D~~g----------~~~~~~   76 (181)
                      ++.+..+.++|+++|++|+|||||++++.+..+. ...++.+.+  ...... +..+.+|||||          ++.+..
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (195)
T 1svi_A           16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             hhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHH
Confidence            3455567899999999999999999999988743 333333322  122222 23699999999          556666


Q ss_pred             chhhccccc---cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCCCccc
Q 030192           77 LWRHYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----ITDKLGLHSLR  149 (181)
Q Consensus        77 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~----~~~~~~~~~~~  149 (181)
                      .+..+++.+   |++++|+|++++.+.....  +...+..   .+.|+++|+||+|+.+......    +.+.+.    .
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~  165 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN----I  165 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT----C
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHc----c
Confidence            677777666   9999999999877765432  2222222   4789999999999987544332    332232    2


Q ss_pred             CcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          150 QRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       150 ~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ..+.+++++||++|.|++++++++.+.+.
T Consensus       166 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          166 DPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            34568999999999999999999998765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=7.3e-27  Score=158.66  Aligned_cols=148  Identities=22%  Similarity=0.278  Sum_probs=107.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCc--cceeEEEEEECCEEEEEEEcCCCCCcc------cchhhccc--c
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--N   84 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--~   84 (181)
                      +.++|+++|++|+|||||++++.+..+. ...|+  .......+...+..+.+|||||+.++.      .....+++  +
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   81 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK   81 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence            3579999999999999999999987653 33343  333345566678999999999998775      23355554  7


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEccc
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      +|++++|+|+++.+   ....|+.....    .++|+++|+||+|+....    ..+++.+.++        ++++++||
T Consensus        82 ~~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA  146 (165)
T 2wji_A           82 PDLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA  146 (165)
T ss_dssp             CSEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred             CCEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEc
Confidence            99999999998643   33445555443    378999999999985421    2344444443        35889999


Q ss_pred             cCCCChHHHHHHHHHHhh
Q 030192          161 TSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~  178 (181)
                      ++|.|++++|+++.+.+.
T Consensus       147 ~~~~~v~~l~~~l~~~~~  164 (165)
T 2wji_A          147 AKKMGIEELKKAISIAVK  164 (165)
T ss_dssp             GGTBSHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHhh
Confidence            999999999999998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.95  E-value=4.4e-27  Score=160.85  Aligned_cols=152  Identities=19%  Similarity=0.239  Sum_probs=109.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc--------hhhccc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQ   83 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   83 (181)
                      ...+|+++|++|+|||||++++.+..+.  ...+  +.......+...+..+.+|||||..++...        ...+++
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE   82 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence            4679999999999999999999987642  2222  333444566777888999999998654321        123568


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192           84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  163 (181)
                      .+|++++|+|++++.++. ...|+..+.... ..++|+++|+||+|+.+..          ....+..+.+++++||++|
T Consensus        83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~----------~~~~~~~~~~~~~~SA~~g  150 (172)
T 2gj8_A           83 QADRVLFMVDGTTTDAVD-PAEIWPEFIARL-PAKLPITVVRNKADITGET----------LGMSEVNGHALIRLSARTG  150 (172)
T ss_dssp             TCSEEEEEEETTTCCCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHCCC----------CEEEEETTEEEEECCTTTC
T ss_pred             hCCEEEEEEECCCCCCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCcch----------hhhhhccCCceEEEeCCCC
Confidence            899999999999887765 335554443322 2479999999999985421          1122234568999999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030192          164 EGLYEGLDWLSNNIAS  179 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~~  179 (181)
                      .|++++|+++.+.+..
T Consensus       151 ~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          151 EGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             TTHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHhhh
Confidence            9999999999887643

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.95  E-value=9.1e-28  Score=166.76  Aligned_cols=164  Identities=19%  Similarity=0.218  Sum_probs=110.9

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEE-EEEECCEEEEEEEcCC----------CCCcccchh
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGG----------QDKIRPLWR   79 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g----------~~~~~~~~~   79 (181)
                      +.+....++|+++|++|+|||||++++.+.......++.+.+.. .....+..+.+|||||          ++.+...+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence            34556778999999999999999999999875544444443321 1222345688999999          445666666


Q ss_pred             hccccc---cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccC-cceEE
Q 030192           80 HYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYI  155 (181)
Q Consensus        80 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~  155 (181)
                      .+++.+   |++++|+|+++..+....  .+...+..   .++|+++|+||+|+.+....+...+... ..+.. ..+++
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~  170 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHR-KVFSKYGEYTI  170 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHH-HHHHSSCCSCE
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHH-HHHhhcCCCce
Confidence            666655   999999999875443222  12222222   2689999999999976543333322221 11111 33579


Q ss_pred             EEccccCCCChHHHHHHHHHHhhhc
Q 030192          156 QSTCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       156 ~~~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      +++||++|.|++++|+++.+.+.++
T Consensus       171 ~~~Sa~~~~gv~~l~~~l~~~l~~~  195 (195)
T 3pqc_A          171 IPTSSVTGEGISELLDLISTLLKEN  195 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHC--
T ss_pred             EEEecCCCCCHHHHHHHHHHHhhcC
Confidence            9999999999999999999988653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.95  E-value=8.9e-27  Score=157.08  Aligned_cols=147  Identities=18%  Similarity=0.229  Sum_probs=105.2

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCc-------ccchhhcccccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYFQNTQ   86 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~d   86 (181)
                      .+|+++|++|+|||||++++.+..+.  ...+  +.......+...+..+.+||+||...+       ...+..+++.+|
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE   81 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence            58999999999999999999988743  2222  333445566678889999999998773       344566788999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce-EEEEccccCCCC
Q 030192           87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSGEG  165 (181)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~g  165 (181)
                      ++++|+|++++.+..  ..++...+..   .++|+++|+||+|+.+..  ++..+     .. ..+. +++++||++|.|
T Consensus        82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~~-----~~-~~~~~~~~~~Sa~~~~g  148 (161)
T 2dyk_A           82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE--LYLGP-----LY-GLGFGDPIPTSSEHARG  148 (161)
T ss_dssp             EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCGG-----GG-GGSSCSCEECBTTTTBS
T ss_pred             EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch--HhHHH-----HH-hCCCCCeEEEecccCCC
Confidence            999999998764432  2334444433   468999999999987541  11111     11 2233 588999999999


Q ss_pred             hHHHHHHHHHHh
Q 030192          166 LYEGLDWLSNNI  177 (181)
Q Consensus       166 v~~~~~~i~~~~  177 (181)
                      ++++|+++.+.+
T Consensus       149 v~~l~~~l~~~l  160 (161)
T 2dyk_A          149 LEELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhC
Confidence            999999998875

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.94  E-value=1.1e-26  Score=173.74  Aligned_cols=165  Identities=17%  Similarity=0.198  Sum_probs=120.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ...++|+++|++|+|||||++++.++.+.. ..+|.+..+. .+...  .+.+.+||+||++++...+..+++.+|++++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            567999999999999999999999887753 4555554432 23333  4567799999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CcccCcce-EEEEccc
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL---------HSLRQRHW-YIQSTCA  160 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~S~  160 (181)
                      |||++++.++......|...+.... .++|+++|+||+|+.+.....+.......         ...+..+. +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            9999999999888744444433322 37999999999998653111111111000         01112233 7999999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030192          161 TSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~~  180 (181)
                      ++|.|++++|+.+.+.+...
T Consensus       312 ~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC-
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence            99999999999999988754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=6.2e-28  Score=167.04  Aligned_cols=160  Identities=17%  Similarity=0.228  Sum_probs=112.9

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEEECCEEEEEEEcCC-----------CCCcccchhhcccc-
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYFQN-   84 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~~~-   84 (181)
                      ++|+++|++|+|||||++++.+..+.. ..|+.......+...  .+.+|||||           ++.+...+..+++. 
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN   79 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence            689999999999999999999987653 345444444444444  689999999           45566667777776 


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHH---------HHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcce
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHR---------MLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHW  153 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~---------~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~  153 (181)
                      ++++++|+++.+..++......|..         ........++|+++|+||+|+.+..  ..+++.+.++..+ .....
T Consensus        80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~  158 (190)
T 2cxx_A           80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDK  158 (190)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHH
T ss_pred             hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCC
Confidence            7777777777667777666333322         1111112479999999999997643  3445555555531 22234


Q ss_pred             EEEEccccCCCChHHHHHHHHHHhhhc
Q 030192          154 YIQSTCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       154 ~~~~~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      +++++||++|.|++++|+++.+.+.++
T Consensus       159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          159 VFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence            688999999999999999999987654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=6.4e-27  Score=173.67  Aligned_cols=162  Identities=21%  Similarity=0.232  Sum_probs=119.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC--cc--cccCccceeEEEEEE-CCEEEEEEEcCCCCCc-----ccchhhccccc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE--IV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKI-----RPLWRHYFQNT   85 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~--~~--~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~-----~~~~~~~~~~~   85 (181)
                      ..+||+++|++|+|||||++++.++.  +.  ...+|.+..+..+.. +++.+.+||+||++++     ...+..+++++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a   81 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV   81 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence            35899999999999999999998873  32  346788888777765 6789999999999988     67888889999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHhH---HHhhhCCCcccCc---ceEEEEc
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAE---ITDKLGLHSLRQR---HWYIQST  158 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~  158 (181)
                      |++++|||+++++++..+..|...+... ....++|+++|+||+|+.+.....+   ..........+..   .++++++
T Consensus        82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t  161 (307)
T 3r7w_A           82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT  161 (307)
T ss_dssp             SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence            9999999999999998886653322110 0125799999999999876211110   1111111112222   2689999


Q ss_pred             cccCCCChHHHHHHHHHHhh
Q 030192          159 CATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       159 S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ||++ .|+.++|..+++.+.
T Consensus       162 Sa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          162 SIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             CTTS-SHHHHHHHHHHHTTC
T ss_pred             eecC-ChHHHHHHHHHHHHc
Confidence            9999 899999999887654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.4e-27  Score=172.94  Aligned_cols=162  Identities=12%  Similarity=0.113  Sum_probs=114.1

Q ss_pred             hcccccEEEEEcCC---------CCChHHHHhhHhc---CCcc-cccCcc-ceeE------------------EEEEECC
Q 030192           13 FAKKEMRILMVGLD---------AAGKTTILYKLKL---GEIV-TTIPTI-GFNV------------------ETVEYKN   60 (181)
Q Consensus        13 ~~~~~~~i~i~G~~---------~~GKSsli~~l~~---~~~~-~~~~~~-~~~~------------------~~~~~~~   60 (181)
                      .....+||+++|.+         |||||||+++|.+   ..+. .+.|++ +..+                  ..++...
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            34577999999999         9999999999998   3443 233432 2111                  0134566


Q ss_pred             EEEEEEE-----------------------cCCCCCcccchhhccc---------------------cccEEEEEEECCC
Q 030192           61 ISFTVWD-----------------------VGGQDKIRPLWRHYFQ---------------------NTQGLIFVVDSND   96 (181)
Q Consensus        61 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~   96 (181)
                      +.+.+||                       ++|++++...+..+++                     ++|++++|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       7778888888888877                     7999999999999


Q ss_pred             c--ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192           97 R--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS  174 (181)
Q Consensus        97 ~--~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~  174 (181)
                      +  +++..+..|+..+.......++|+++|+||+|+.+....++.......    ..+++++++||++|.|++++|+++.
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~e~SAk~g~gv~elf~~l~  250 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----KKNLQVVETSARSNVNVDLAFSTLV  250 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----SSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----cCCCeEEEEECCCCCCHHHHHHHHH
Confidence            8  899999888877655322247999999999998654222222221111    1245789999999999999999999


Q ss_pred             HHhh
Q 030192          175 NNIA  178 (181)
Q Consensus       175 ~~~~  178 (181)
                      +.+.
T Consensus       251 ~~l~  254 (255)
T 3c5h_A          251 QLID  254 (255)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=1e-25  Score=155.75  Aligned_cols=151  Identities=22%  Similarity=0.275  Sum_probs=113.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccc--eeEEEEEECCEEEEEEEcCCCCCcc------cchhhccc--
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--   83 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--   83 (181)
                      .+.++|+++|++|+|||||+++|.+..+. ...|+.+  .....+...+..+.+|||||+.++.      ..+..++.  
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   84 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE   84 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence            46789999999999999999999987643 3344333  3445567788999999999998775      33555554  


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEcc
Q 030192           84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTC  159 (181)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      .+|++++|+|.++   +.....|+.....    .++|+++|+||+|+.+.    ...+++.+.++        ++++++|
T Consensus        85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~S  149 (188)
T 2wjg_A           85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLS  149 (188)
T ss_dssp             CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECB
T ss_pred             CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEEE
Confidence            4999999999864   4555556655544    47899999999998543    23444544444        3588999


Q ss_pred             ccCCCChHHHHHHHHHHhhhc
Q 030192          160 ATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       160 ~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      |+++.|++++|+++.+.+.++
T Consensus       150 a~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          150 AAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             GGGTBSHHHHHHHHHHHHTTC
T ss_pred             ecCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999887653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.94  E-value=8.1e-27  Score=165.50  Aligned_cols=164  Identities=16%  Similarity=0.120  Sum_probs=110.5

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcCCc-c--cccC--ccceeEEEEE-ECCEEEEEEEcCCCCC----------c
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-V--TTIP--TIGFNVETVE-YKNISFTVWDVGGQDK----------I   74 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~--~~~~--~~~~~~~~~~-~~~~~~~i~D~~g~~~----------~   74 (181)
                      +.+....++|+++|.+|+|||||+++|.+... .  ...+  |.......+. ..+..+.+|||||...          +
T Consensus        23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~  102 (223)
T 4dhe_A           23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW  102 (223)
T ss_dssp             GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence            45556789999999999999999999998862 2  2222  3333333333 3467899999999532          3


Q ss_pred             ccchhhcccc---ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc---
Q 030192           75 RPLWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL---  148 (181)
Q Consensus        75 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---  148 (181)
                      ......+++.   +|++++|+|+++..+  .....+...+..   .++|+++|+||+|+.+.....+....+.....   
T Consensus       103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~  177 (223)
T 4dhe_A          103 EQLLSSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR  177 (223)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence            4444555555   888999999987544  233333444443   47899999999999764332222211111000   


Q ss_pred             ---cCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          149 ---RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       149 ---~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                         .....+++++||++|.|++++++++.+.+.+
T Consensus       178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence               1246689999999999999999999988764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=3e-25  Score=160.83  Aligned_cols=149  Identities=19%  Similarity=0.259  Sum_probs=112.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc------hhhcc--c
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--Q   83 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~   83 (181)
                      .+.++|+++|++|+|||||+|+|.+..+. ...|  |.......+...+..+.+|||||...+...      ...++  .
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~   82 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG   82 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence            45689999999999999999999987764 3344  333444556677899999999999877643      24454  5


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEcc
Q 030192           84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTC  159 (181)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      .+|++++|+|+++.++.   ..++..+..    .++|+++++||+|+.+..    ..+++.+.++        ++++++|
T Consensus        83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S  147 (258)
T 3a1s_A           83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS  147 (258)
T ss_dssp             CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred             CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence            89999999999886543   334444444    479999999999985421    3445555554        3689999


Q ss_pred             ccCCCChHHHHHHHHHHhh
Q 030192          160 ATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       160 ~~~~~gv~~~~~~i~~~~~  178 (181)
                      |++|.|++++++.+.+.+.
T Consensus       148 A~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          148 SVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             eeCCcCHHHHHHHHHHHhh
Confidence            9999999999999988764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.93  E-value=6.1e-26  Score=158.53  Aligned_cols=158  Identities=18%  Similarity=0.328  Sum_probs=119.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ..++|+++|++|||||||++++.+..+. .+.|+.+...  ..+...+  +.+.+||++|++++...+..+++.++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            4689999999999999999999998765 3456655443  3444444  678899999999999888889999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |+|+++..++.....|+..+... ...+.|+++++||+|+.+..  ..++....     +...++.++++|++++.|+++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l-----~~~~~~~~~d~Sal~~~~i~~  157 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF-----AEKNNLSFIETSALDSTNVEE  157 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCeEEEEeCCCCCCHHH
Confidence            99999888887777776554332 22468999999999996532  22222211     123345788999999999999


Q ss_pred             HHHHHHHHhhh
Q 030192          169 GLDWLSNNIAS  179 (181)
Q Consensus       169 ~~~~i~~~~~~  179 (181)
                      +++.+.+.+.+
T Consensus       158 l~~~l~~~~~~  168 (199)
T 2f9l_A          158 AFKNILTEIYR  168 (199)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=5.1e-25  Score=163.46  Aligned_cols=161  Identities=16%  Similarity=0.129  Sum_probs=116.7

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCccccc--C--ccceeEEEEEEC-CEEEEEEEcCCCCCcc----------cc
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYK-NISFTVWDVGGQDKIR----------PL   77 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--~--~~~~~~~~~~~~-~~~~~i~D~~g~~~~~----------~~   77 (181)
                      ++...-.|+++|.+|+|||||+|+|.+..+....  +  |........... +..+.+|||||..+..          ..
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~   85 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI   85 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence            3455678999999999999999999998865322  2  333334445666 8999999999986654          45


Q ss_pred             hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcccCcceEEE
Q 030192           78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQ  156 (181)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~  156 (181)
                      ...+++.+|++++|+|+++..+......|+..+..    .++|+++|+||+|+. +.....+....+....  ....+++
T Consensus        86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~  159 (308)
T 3iev_A           86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIV  159 (308)
T ss_dssp             HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEE
T ss_pred             HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEE
Confidence            66778899999999999988887766554544433    478999999999997 4433333222221110  0123689


Q ss_pred             EccccCCCChHHHHHHHHHHhhh
Q 030192          157 STCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       157 ~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      ++||++|.|++++++.+.+.+.+
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSCB
T ss_pred             EEeCCCCCCHHHHHHHHHHhCcc
Confidence            99999999999999999988754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=6.1e-25  Score=162.40  Aligned_cols=155  Identities=17%  Similarity=0.093  Sum_probs=112.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc--ccC--ccceeEEEEEECCEEEEEEEcCCCCC--------cccchhhccc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ   83 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   83 (181)
                      +..+|+++|++|+|||||+|+|++..+..  ..|  |.......+...+..+.+|||||..+        +......+++
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~   85 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   85 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence            45679999999999999999999987642  222  22222233556789999999999876        3445667789


Q ss_pred             cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccC
Q 030192           84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      .+|++++|+|++++.+..  ..++...+.... .+.|+++|+||+|+.+... ..+..+.+ .     ...+++++||++
T Consensus        86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~-----~~~~~~~iSA~~  156 (301)
T 1wf3_A           86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL-L-----PEAEPRMLSALD  156 (301)
T ss_dssp             SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT-S-----TTSEEEECCTTC
T ss_pred             cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh-c-----CcCcEEEEeCCC
Confidence            999999999998765543  455555554422 3799999999999876433 22333333 1     123688999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030192          163 GEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~~~  179 (181)
                      |.|++++++.+...+.+
T Consensus       157 g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          157 ERQVAELKADLLALMPE  173 (301)
T ss_dssp             HHHHHHHHHHHHTTCCB
T ss_pred             CCCHHHHHHHHHHhccc
Confidence            99999999999876643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=4.4e-25  Score=159.73  Aligned_cols=144  Identities=17%  Similarity=0.143  Sum_probs=107.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cccCc--cceeEEEEEECCEEEEEEEcCCCCCccc----------chhhcc--
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIRP----------LWRHYF--   82 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~--   82 (181)
                      .+|+++|.+|+|||||+|+|.+.... ...|+  .......+...+..+.+|||||...+..          ....++  
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~   81 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID   81 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence            48999999999999999999988754 33443  3344556777888999999999877654          345566  


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEc
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQST  158 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      +++|++++|+|+++.++...   +.. .+..   .++|+++|+||+|+.+..    ..+.+.+.++        ++++++
T Consensus        82 ~~~d~vi~VvDas~~~~~~~---l~~-~l~~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~  146 (256)
T 3iby_A           82 LEYDCIINVIDACHLERHLY---LTS-QLFE---LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI  146 (256)
T ss_dssp             SCCSEEEEEEEGGGHHHHHH---HHH-HHTT---SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred             CCCCEEEEEeeCCCchhHHH---HHH-HHHH---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence            78999999999987543332   222 2332   479999999999986432    3344555554        368999


Q ss_pred             cccCCCChHHHHHHHHHH
Q 030192          159 CATSGEGLYEGLDWLSNN  176 (181)
Q Consensus       159 S~~~~~gv~~~~~~i~~~  176 (181)
                      ||++|.|++++++.+.+.
T Consensus       147 SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          147 QAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             BGGGTBSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            999999999999999865

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=2e-25  Score=172.84  Aligned_cols=172  Identities=12%  Similarity=0.096  Sum_probs=117.6

Q ss_pred             hhHHHHHHhhhc-------ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCC
Q 030192            3 LTFTKLFSRLFA-------KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQ   71 (181)
Q Consensus         3 ~~~~~~~~~~~~-------~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~   71 (181)
                      .++..+...++.       ...++|+++|++|+|||||+|++.+....  +..+  |.......+...+..+.+|||||+
T Consensus       154 ~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~  233 (436)
T 2hjg_A          154 DLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM  233 (436)
T ss_dssp             HHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHH
T ss_pred             HHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCc
Confidence            345555554442       25689999999999999999999988753  3333  223333456778889999999997


Q ss_pred             C----------Ccccch-hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhH
Q 030192           72 D----------KIRPLW-RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAE  138 (181)
Q Consensus        72 ~----------~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~  138 (181)
                      .          .|.... ..+++.+|++++|+|++++.+.+.. .++.....    .++|+++|+||+|+.+...  .++
T Consensus       234 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~  308 (436)
T 2hjg_A          234 RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKE  308 (436)
T ss_dssp             TCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHH
T ss_pred             CcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHH
Confidence            3          333222 2467889999999999998887664 34443333    5799999999999976543  223


Q ss_pred             HHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      +.+.+........+.+++++||++|.|++++|+.+.+.+.+
T Consensus       309 ~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          309 FEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             HHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence            33322222222234579999999999999999999887654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.92  E-value=2.5e-25  Score=162.64  Aligned_cols=148  Identities=20%  Similarity=0.212  Sum_probs=108.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCc--cceeEEEEEECCEEEEEEEcCCCCCcccc----------hhhcc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHYF   82 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~~   82 (181)
                      +.++|+++|.+|+|||||+|+|.+..+. ...|+  .......+...+..+.+|||||..++...          ...++
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~   81 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence            4689999999999999999999988754 33343  33444556667889999999998776621          22232


Q ss_pred             --ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEE
Q 030192           83 --QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQ  156 (181)
Q Consensus        83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~  156 (181)
                        +.+|++++|+|+++.++......++.   .    .++|+++|+||+|+.+..    ..+++.+.++.        +++
T Consensus        82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~--------~~i  146 (274)
T 3i8s_A           82 LSGDADLLINVVDASNLERNLYLTLQLL---E----LGIPCIVALNMLDIAEKQNIRIEIDALSARLGC--------PVI  146 (274)
T ss_dssp             HHTCCSEEEEEEEGGGHHHHHHHHHHHH---H----HTCCEEEEEECHHHHHHTTEEECHHHHHHHHTS--------CEE
T ss_pred             hhcCCCEEEEEecCCChHHHHHHHHHHH---h----cCCCEEEEEECccchhhhhHHHHHHHHHHhcCC--------CEE
Confidence              68999999999987544433333332   2    279999999999986532    34445555543        588


Q ss_pred             EccccCCCChHHHHHHHHHHhh
Q 030192          157 STCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       157 ~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ++||++|.|++++++.+.+.+.
T Consensus       147 ~~SA~~g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          147 PLVSTRGRGIEALKLAIDRYKA  168 (274)
T ss_dssp             ECCCGGGHHHHHHHHHHHTCCC
T ss_pred             EEEcCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999987664

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=4.3e-25  Score=160.99  Aligned_cols=147  Identities=17%  Similarity=0.247  Sum_probs=106.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCc-ccccCccce--eEEEEEECCEEEEEEEcCCCCCcc------cchhhccc--c
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGF--NVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--N   84 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--~   84 (181)
                      ..++|+++|++|+|||||+|+|.+... ....|....  ....+.. +..+.+|||||..++.      .....++.  .
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~   80 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR   80 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence            357999999999999999999998763 333443332  2333333 6789999999998775      34455554  6


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      +|++++|+|+++.++   ...|+..+..    .++|+++++||+|+...    ...+.+.+.++        ++++++||
T Consensus        81 ~d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA  145 (272)
T 3b1v_A           81 ADSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSA  145 (272)
T ss_dssp             CSEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBT
T ss_pred             CCEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEc
Confidence            999999999987543   3344444443    47999999999998542    23445555554        36899999


Q ss_pred             cCCCChHHHHHHHHHHhh
Q 030192          161 TSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~  178 (181)
                      ++|.|++++|+++.+.+.
T Consensus       146 ~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          146 LKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             TTTBSHHHHHHHHHHSCT
T ss_pred             cCCCCHHHHHHHHHHHHh
Confidence            999999999999988654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.92  E-value=7.4e-25  Score=152.17  Aligned_cols=156  Identities=17%  Similarity=0.329  Sum_probs=118.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECC--EEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ..++|+++|++|||||||++++.+..+. .+.||.+..+  ..+...+  +.+.+||++|.+++...+..+++.++++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~  107 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL  107 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence            4589999999999999999999998765 4466666544  3455544  566789999999999988989999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |+|+++..++.....|+..+... ...+.|+++++||+|+.+..  ..++... +    +...++.++++|++++.|+++
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~-l----~~~~~~~~ld~Sald~~~v~~  181 (191)
T 1oix_A          108 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARA-F----AEKNGLSFIETSALDSTNVEA  181 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHH-H----HHHcCCEEEEEeCCCCCCHHH
Confidence            99999888887777666544322 12468999999999986532  2222211 1    223345788999999999999


Q ss_pred             HHHHHHHHh
Q 030192          169 GLDWLSNNI  177 (181)
Q Consensus       169 ~~~~i~~~~  177 (181)
                      +|+.+.+.+
T Consensus       182 l~~~l~~~i  190 (191)
T 1oix_A          182 AFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998865

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.92  E-value=2.5e-24  Score=167.61  Aligned_cols=153  Identities=20%  Similarity=0.226  Sum_probs=97.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc--ccccC--ccceeEEEEEECCEEEEEEEcCCCCCcccch--------hhcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------RHYF   82 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~   82 (181)
                      +..++|+++|++|+|||||+|+|.+...  .+..+  |.......+...+..+.+|||||..++...+        ..++
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            4678999999999999999999998753  23333  3334445677789999999999987655432        4467


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH--HHhhhCCCcccCcceEEEEccc
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--ITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      +.+|++++|+|++++.++..... +..++...  .++|+++|+||+|+.+....+.  +... .       ..+++++||
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~-------~~~~i~vSA  379 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTE-IRELKAAH--PAAKFLTVANKLDRAANADALIRAIADG-T-------GTEVIGISA  379 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH-H-------TSCEEECBT
T ss_pred             ccCCEEEEEEECCCCcchhhhHH-HHHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc-C-------CCceEEEEE
Confidence            89999999999998877643222 11222221  2699999999999976543321  2221 0       135889999


Q ss_pred             cCCCChHHHHHHHHHHhh
Q 030192          161 TSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~  178 (181)
                      ++|.|++++++++.+.+.
T Consensus       380 ktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          380 LNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TTTBSHHHHHHHHTHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998775

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.92  E-value=1.6e-24  Score=171.68  Aligned_cols=156  Identities=21%  Similarity=0.313  Sum_probs=107.5

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEE------------ECCEEEEEEEcCCCCCcccchhh
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE------------YKNISFTVWDVGGQDKIRPLWRH   80 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~i~D~~g~~~~~~~~~~   80 (181)
                      ..+.+||+++|.+|||||||++++.+..+. ...||.+..+....            ...+.+.+||+||++.+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            356799999999999999999999998875 34677777665431            13689999999999999999999


Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQST  158 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      +++++|++++|+|+++.+..   ..|+..+....  .++|+++|+||+|+.+...  .+++....     ...+.+++++
T Consensus       118 ~l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~v  187 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERF-----PAIENRFHRI  187 (535)
T ss_dssp             HHHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHC-----GGGTTCEEEC
T ss_pred             HccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHH-----HhcCCceEEE
Confidence            99999999999999876444   33443333321  3689999999999976433  22333322     2233468999


Q ss_pred             cccCCCChHHHHHHHHHHhhh
Q 030192          159 CATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       159 S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      ||++|.|+++++..+.+.+.+
T Consensus       188 SA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          188 SCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             CC-----CTTHHHHHHHHHTC
T ss_pred             ecCcccCHHHHHHHHHHHHhc
Confidence            999999999999999988764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=6.5e-24  Score=154.98  Aligned_cols=150  Identities=21%  Similarity=0.240  Sum_probs=113.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccc--eeEEEEEECCEEEEEEEcCCCCCccc------chhhcc--cc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRP------LWRHYF--QN   84 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~   84 (181)
                      +.++|+++|++|+|||||+|+|.+..+. ...|+.+  .....+...+..+.+|||||...+..      ....++  .+
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   81 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN   81 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence            4579999999999999999999988764 2344333  44455677888999999999887765      445555  68


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      +|++++|+|+++.   .....++......   ..+|+++++||+|+.+.    ...+.+.+.++.        +++++|+
T Consensus        82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~--------~~~~~Sa  147 (271)
T 3k53_A           82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGV--------PVIPTNA  147 (271)
T ss_dssp             CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSS--------CEEECBG
T ss_pred             CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcCC--------cEEEEEe
Confidence            9999999999864   3444555555543   23999999999997532    234556665554        5889999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030192          161 TSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~  179 (181)
                      ++|.|++++++.+.+.+..
T Consensus       148 ~~g~gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          148 KKGEGVEELKRMIALMAEG  166 (271)
T ss_dssp             GGTBTHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999987654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=3.2e-26  Score=161.93  Aligned_cols=119  Identities=24%  Similarity=0.329  Sum_probs=95.1

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCccc----ccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccc----
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN----   84 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----   84 (181)
                      ...+.++|+++|++|+|||||+++|.+..+..    ..|+.+..+     ....+.+|||||++++...+..+++.    
T Consensus         8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   82 (218)
T 1nrj_B            8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF   82 (218)
T ss_dssp             --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence            34678999999999999999999999887643    233332222     56789999999999999888888877    


Q ss_pred             ccEEEEEEECC-CcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCCH
Q 030192           85 TQGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMNA  136 (181)
Q Consensus        85 ~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~~~  136 (181)
                      +|++++|+|++ +++++.....|+..++...   ...++|+++|+||+|+.+....
T Consensus        83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  138 (218)
T 1nrj_B           83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP  138 (218)
T ss_dssp             EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence            89999999999 8889988888888876542   1257999999999999876543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.91  E-value=1.4e-23  Score=155.82  Aligned_cols=135  Identities=24%  Similarity=0.424  Sum_probs=109.6

Q ss_pred             cCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC----------CcccHHHHHHHHHHHHcCCC
Q 030192           46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDE  115 (181)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~  115 (181)
                      .||.|+....+...++.+++||++|+++++..|.+++++++++|+|+|++          +..++.+...++..++.+..
T Consensus       152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~  231 (327)
T 3ohm_A          152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW  231 (327)
T ss_dssp             CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred             CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence            35778888888899999999999999999999999999999999999664          67789999999999988776


Q ss_pred             CCCCeEEEEEeCCCCCCC------------------CCHhHHHhhh-----CCCcccCcceEEEEccccCCCChHHHHHH
Q 030192          116 LRDAVLLVFANKQDLPNA------------------MNAAEITDKL-----GLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus       116 ~~~~piivv~nK~Dl~~~------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      ..+.|+++++||+|+.+.                  ...++....+     .....+..++.+++|||+++.||+++|..
T Consensus       232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~  311 (327)
T 3ohm_A          232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA  311 (327)
T ss_dssp             GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence            678999999999998531                  1222322221     22223446788899999999999999999


Q ss_pred             HHHHhhhc
Q 030192          173 LSNNIASK  180 (181)
Q Consensus       173 i~~~~~~~  180 (181)
                      +.+.+.++
T Consensus       312 v~~~Il~~  319 (327)
T 3ohm_A          312 VKDTILQL  319 (327)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99988764

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.91  E-value=2.6e-24  Score=161.71  Aligned_cols=134  Identities=26%  Similarity=0.440  Sum_probs=107.4

Q ss_pred             CccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCC----------cccHHHHHHHHHHHHcCCCC
Q 030192           47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDEL  116 (181)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~  116 (181)
                      ||.|+....+...++.+++||++|+++++..|..++++++++|+|+|+++          ..++.+...|+..+......
T Consensus       179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~  258 (353)
T 1cip_A          179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  258 (353)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence            46677777788889999999999999999999999999999999999998          46799999999999887666


Q ss_pred             CCCeEEEEEeCCCCCC-----------------CCCHhHHHhhhC-----CCcc-cCcceEEEEccccCCCChHHHHHHH
Q 030192          117 RDAVLLVFANKQDLPN-----------------AMNAAEITDKLG-----LHSL-RQRHWYIQSTCATSGEGLYEGLDWL  173 (181)
Q Consensus       117 ~~~piivv~nK~Dl~~-----------------~~~~~~~~~~~~-----~~~~-~~~~~~~~~~S~~~~~gv~~~~~~i  173 (181)
                      .++|+++++||+|+..                 +...++......     +... ...++.+++|||+++.||+++|.++
T Consensus       259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v  338 (353)
T 1cip_A          259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV  338 (353)
T ss_dssp             TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence            7899999999999852                 122333332221     1111 2357889999999999999999999


Q ss_pred             HHHhhhc
Q 030192          174 SNNIASK  180 (181)
Q Consensus       174 ~~~~~~~  180 (181)
                      .+.+.++
T Consensus       339 ~~~i~~~  345 (353)
T 1cip_A          339 TDVIIKN  345 (353)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=2.2e-23  Score=157.64  Aligned_cols=158  Identities=17%  Similarity=0.180  Sum_probs=115.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-c--ccCccceeEEEEEECCEEEEEEEcCCCCCcc---------cchhhcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYF   82 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~   82 (181)
                      ...++|+++|++|+|||||++++.+.... .  ...|.+.....+...+..+.+|||||.....         .......
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  244 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR  244 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence            46789999999999999999999987743 1  1335555556666678899999999975432         1122344


Q ss_pred             ccccEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           83 QNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      ..+|++++|+|++++.  ++.....++..+.....  ++|+++|+||+|+.+....++.....     +..+++++++||
T Consensus       245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA  317 (357)
T 2e87_A          245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA  317 (357)
T ss_dssp             GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred             hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence            5699999999998876  67777777766655322  79999999999987643332222221     123456889999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030192          161 TSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~  179 (181)
                      ++|.|++++++++.+.+..
T Consensus       318 ~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          318 LKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TTTBTHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9999999999999987753

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.91  E-value=8.6e-24  Score=164.72  Aligned_cols=150  Identities=25%  Similarity=0.349  Sum_probs=112.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCc--ccccC--ccceeEEEEEECCEEEEEEEcCCCC-Cccc--------chhhcc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQD-KIRP--------LWRHYF   82 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~~   82 (181)
                      ..++|+++|.||+|||||+|+|.+...  .+..|  |.......+...+..+.+|||||.. ++..        ....++
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            458999999999999999999998753  33333  4444556677789999999999987 5432        234567


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      +.+|++++|+|++++.+++.. +.+ +.+     .++|+++|+||+|+.+....+++.+...      .+.+++++||++
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAkt  388 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALK  388 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGG
T ss_pred             hcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCC
Confidence            899999999999988777543 233 232     3689999999999976544445544322      123588999999


Q ss_pred             CCChHHHHHHHHHHhh
Q 030192          163 GEGLYEGLDWLSNNIA  178 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~~  178 (181)
                      |.|++++++++.+.+.
T Consensus       389 g~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          389 GEGLEKLEESIYRETQ  404 (482)
T ss_dssp             TCCHHHHHHHHHHHTH
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=2.7e-24  Score=167.39  Aligned_cols=160  Identities=14%  Similarity=0.163  Sum_probs=111.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCC----------CCCcccchh-
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGG----------QDKIRPLWR-   79 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~-   79 (181)
                      ...++|+++|.+|+|||||++++.+....  ...+  |.......+...+..+.+|||||          ++++..... 
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  272 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  272 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence            35689999999999999999999977532  3333  22233356677888999999999          555555443 


Q ss_pred             hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEE
Q 030192           80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS  157 (181)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      .+++.+|++++|+|+++...  ....++...+..   .++|+++|+||+|+.+...  .+++.+............++++
T Consensus       273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (456)
T 4dcu_A          273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  347 (456)
T ss_dssp             HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            36788999999999987544  333444444443   5799999999999976432  2333332221111122357899


Q ss_pred             ccccCCCChHHHHHHHHHHhhh
Q 030192          158 TCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       158 ~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      +||++|.|++++|+.+.+.+.+
T Consensus       348 ~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          348 MSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999987654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.91  E-value=4e-24  Score=160.20  Aligned_cols=156  Identities=24%  Similarity=0.304  Sum_probs=114.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECC-EEEEEEEcCCC----CCcccchhhccc---ccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQ----DKIRPLWRHYFQ---NTQ   86 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~-~~~~i~D~~g~----~~~~~~~~~~~~---~~d   86 (181)
                      .+|+++|.+|||||||++++.+.++. ..  .+|...+...+...+ ..+.+|||||.    ..+..+...+++   .+|
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            47999999999999999999987643 22  235555555566654 79999999994    334444455544   599


Q ss_pred             EEEEEEECCC---cccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEcccc
Q 030192           87 GLIFVVDSND---RDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCAT  161 (181)
Q Consensus        87 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~  161 (181)
                      ++++|+|+++   ++++.....|+..+.... ...++|+++|+||+|+.+.. ..+++.+.+...      .+++++||+
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~------~~v~~iSA~  312 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD------YPVFPISAV  312 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC------CCBCCCSSC
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC------CCEEEEECC
Confidence            9999999998   778888777766665432 23579999999999987542 123344433311      357899999


Q ss_pred             CCCChHHHHHHHHHHhhh
Q 030192          162 SGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~~~  179 (181)
                      ++.|+++++.++.+.+.+
T Consensus       313 tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          313 TREGLRELLFEVANQLEN  330 (342)
T ss_dssp             CSSTTHHHHHHHHHHHTS
T ss_pred             CCcCHHHHHHHHHHHHhh
Confidence            999999999999998865

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.91  E-value=6.9e-24  Score=162.77  Aligned_cols=161  Identities=17%  Similarity=0.097  Sum_probs=113.0

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCccccc----Cccc----------e---------eEEEEEECCEEEEEEEcC
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIG----------F---------NVETVEYKNISFTVWDVG   69 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~~~----------~---------~~~~~~~~~~~~~i~D~~   69 (181)
                      ..+..++|+++|++|+|||||+++|.+.......    .+.+          .         ...........+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            3467899999999999999999999875322110    0000          0         000001122689999999


Q ss_pred             CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCC
Q 030192           70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----ITDKLGL  145 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~----~~~~~~~  145 (181)
                      |+++|......++..+|++++|+|+++..+.....+++......   ..+|+++++||+|+.+.....+    +.+.+..
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999876566666655444322   2358999999999986532222    2222211


Q ss_pred             CcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       146 ~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                        ....+++++++||++|.|++++++.+.+.+.
T Consensus       161 --~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          161 --TWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             --STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             --hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence              1123567999999999999999999988664

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.91  E-value=2.1e-23  Score=157.28  Aligned_cols=132  Identities=26%  Similarity=0.410  Sum_probs=98.2

Q ss_pred             ccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCC----------cccHHHHHHHHHHHHcCCCCC
Q 030192           48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR  117 (181)
Q Consensus        48 ~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~  117 (181)
                      |.|+....+..+++.+++|||+|+++++..|..++++++++|+|+|+++          ..++.+...++..+.......
T Consensus       188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~  267 (362)
T 1zcb_A          188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS  267 (362)
T ss_dssp             CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred             ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence            4566666777889999999999999999999999999999999999998          678999999999998876557


Q ss_pred             CCeEEEEEeCCCCCCC------------------CCHhHHHhhh-----CCCccc-CcceEEEEccccCCCChHHHHHHH
Q 030192          118 DAVLLVFANKQDLPNA------------------MNAAEITDKL-----GLHSLR-QRHWYIQSTCATSGEGLYEGLDWL  173 (181)
Q Consensus       118 ~~piivv~nK~Dl~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~S~~~~~gv~~~~~~i  173 (181)
                      ++|+|+++||+|+...                  ...++.....     .+.... ...+.+++|||+++.||+++|.++
T Consensus       268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v  347 (362)
T 1zcb_A          268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV  347 (362)
T ss_dssp             TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence            8999999999998521                  2333333322     111111 346788999999999999999999


Q ss_pred             HHHhhh
Q 030192          174 SNNIAS  179 (181)
Q Consensus       174 ~~~~~~  179 (181)
                      .+.+.+
T Consensus       348 ~~~i~~  353 (362)
T 1zcb_A          348 KDTILH  353 (362)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=1.5e-24  Score=166.40  Aligned_cols=154  Identities=19%  Similarity=0.158  Sum_probs=107.7

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcc--cc--cCccceeEEEEEECCE-EEEEEEcCCCCCcccc-------hhh
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNI-SFTVWDVGGQDKIRPL-------WRH   80 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~--~~~~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~-------~~~   80 (181)
                      +....++|+++|++|+|||||++++.+..+.  +.  ..|.......+...+. .+.+|||||+.++...       ...
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence            4457789999999999999999999988763  22  2244455566666554 8999999999877654       344


Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      +++.+|++++|+|+...   .....|+..+..    .++|+++|+||+|+.+.... +..+.+.    +..+++++++||
T Consensus       110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vSA  177 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPT---PYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVSA  177 (423)
T ss_dssp             HHTSCSEEEEECSSSCC---HHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCSS
T ss_pred             HHhcCCEEEEEEeCCCh---HHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEEC
Confidence            77889999999999322   223334433333    37999999999999876544 2222222    233457889999


Q ss_pred             cCCCChHHHHHHHHHHhh
Q 030192          161 TSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~  178 (181)
                      ++|.|++++|+.+.+.+.
T Consensus       178 ktg~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          178 LQKKGFDDIGKTISEILP  195 (423)
T ss_dssp             CCTTSTTTHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHhhh
Confidence            999999999999999874

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=2e-23  Score=161.84  Aligned_cols=150  Identities=19%  Similarity=0.207  Sum_probs=102.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCc---------ccchhhcccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQN   84 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~   84 (181)
                      .+|+++|.||+|||||+|+|.+.+..  ...|  |.......+...+..+.+|||||.+..         ...+..+++.
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~   81 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   81 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence            47999999999999999999988743  3333  333445677788899999999997642         3446677899


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce-EEEEccccCC
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSG  163 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~  163 (181)
                      +|++++|+|+.+..+..  ..++..++..   .++|+++|+||+|+.+.. ..+....+    + ..+. .++++||++|
T Consensus        82 ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~----~-~lg~~~~~~iSA~~g  150 (439)
T 1mky_A           82 ADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPEL----Y-SLGFGEPIPVSAEHN  150 (439)
T ss_dssp             CSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHH----G-GGSSCSCEECBTTTT
T ss_pred             CCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHH----H-hcCCCCEEEEeccCC
Confidence            99999999998754432  2333444432   368999999999975320 11110111    1 1122 4679999999


Q ss_pred             CChHHHHHHHHHHhh
Q 030192          164 EGLYEGLDWLSNNIA  178 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~  178 (181)
                      .|++++++.+.+.+.
T Consensus       151 ~gv~~L~~~i~~~l~  165 (439)
T 1mky_A          151 INLDTMLETIIKKLE  165 (439)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcc
Confidence            999999999988775

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=5.6e-24  Score=164.77  Aligned_cols=149  Identities=22%  Similarity=0.293  Sum_probs=100.9

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccccCccce----eEEEEEECCEEEEEEEcCCCC--------Ccccchhhcccc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQN   84 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~   84 (181)
                      ..+|+++|.+|+|||||+|+|.+.......++.+.    .+..+...+..+.+|||||.+        .+...+..+++.
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            36899999999999999999998776433333333    333444567789999999985        455667778899


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce-EEEEccccCC
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSG  163 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~  163 (181)
                      +|++++|+|+.+..+..  ..++...+..   .++|+++|+||+|+.+...  +.     ..++ ..+. .++++||++|
T Consensus        83 ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~~-----~~~~-~lg~~~~~~iSA~~g  149 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NI-----YDFY-SLGFGEPYPISGTHG  149 (436)
T ss_dssp             CSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------CC-----CSSG-GGSSCCCEECBTTTT
T ss_pred             CCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh--hH-----HHHH-HcCCCCeEEEeCcCC
Confidence            99999999998765543  3456666654   5789999999999865321  00     1111 1222 5779999999


Q ss_pred             CChHHHHHHHHHHhh
Q 030192          164 EGLYEGLDWLSNNIA  178 (181)
Q Consensus       164 ~gv~~~~~~i~~~~~  178 (181)
                      .|++++++++.+.+.
T Consensus       150 ~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFK  164 (436)
T ss_dssp             BTHHHHHHHHHHTGG
T ss_pred             CChHHHHHHHHHhcC
Confidence            999999999998775

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.89  E-value=2.6e-23  Score=154.86  Aligned_cols=133  Identities=26%  Similarity=0.368  Sum_probs=106.4

Q ss_pred             CccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC----------CcccHHHHHHHHHHHHcCCCC
Q 030192           47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDEL  116 (181)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~  116 (181)
                      +|.|+....+...++.+++||++|+++++..|..++++++++|+|+|++          +..++.+...||..++.....
T Consensus       147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~  226 (340)
T 4fid_A          147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL  226 (340)
T ss_dssp             CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred             ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence            4677778888889999999999999999999999999999999999998          678899999999999988766


Q ss_pred             CCCeEEEEEeCCCCCCC-----------------CCHhHHHhh----h-------CCCcccC-----------cceEEEE
Q 030192          117 RDAVLLVFANKQDLPNA-----------------MNAAEITDK----L-------GLHSLRQ-----------RHWYIQS  157 (181)
Q Consensus       117 ~~~piivv~nK~Dl~~~-----------------~~~~~~~~~----~-------~~~~~~~-----------~~~~~~~  157 (181)
                      .+.|+++++||+|+.+.                 ...++..+.    +       .+.....           ..+.+++
T Consensus       227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~  306 (340)
T 4fid_A          227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP  306 (340)
T ss_dssp             TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred             CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence            78999999999998531                 112222111    1       1111111           4588999


Q ss_pred             ccccCCCChHHHHHHHHHHhhh
Q 030192          158 TCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       158 ~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      |||+++.||+.+|..+.+.+.+
T Consensus       307 TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          307 TNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             ECTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEeeCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999887753

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.89  E-value=2.2e-23  Score=161.80  Aligned_cols=151  Identities=16%  Similarity=0.186  Sum_probs=101.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc--ccccCcc--ceeEEEEEECCEEEEEEEcCCCCCcccc--------hhhcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTI--GFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF   82 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~   82 (181)
                      +..++|+++|++|+|||||+|+|.+...  .+..+++  ......+...+..+.+|||||..++...        ...++
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            3568999999999999999999988653  2333332  2333456778899999999997654433        23356


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      +.+|++++|+|++++.+... ..++ ..+.     ++|+++|+||+|+.+......      ...+. ...+++++||++
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~-~~l~-----~~piivV~NK~Dl~~~~~~~~------~~~~~-~~~~~i~iSAkt  367 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIY-EQVK-----HRPLILVMNKIDLVEKQLITS------LEYPE-NITQIVHTAAAQ  367 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHH-HHHT-----TSCEEEEEECTTSSCGGGSTT------CCCCT-TCCCEEEEBTTT
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHH-Hhcc-----CCcEEEEEECCCCCcchhhHH------HHHhc-cCCcEEEEECCC
Confidence            88999999999998766544 3333 3333     369999999999876432221      11111 344688999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030192          163 GEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~~~  179 (181)
                      |.|++++++.+.+.+..
T Consensus       368 g~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          368 KQGIDSLETAILEIVQT  384 (462)
T ss_dssp             TBSHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999988754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=7.8e-23  Score=158.48  Aligned_cols=159  Identities=17%  Similarity=0.155  Sum_probs=106.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc--cccCc--cceeEEEEEECCEEEEEEEcCCCCCcccc------------hh
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIRPL------------WR   79 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------------~~   79 (181)
                      ..++|+++|++|||||||+|++.+....  +..|.  .......+...+..+.+|||+|..+....            ..
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~  258 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV  258 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence            3579999999999999999999988653  33332  22333456677889999999997433221            12


Q ss_pred             hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEE
Q 030192           80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS  157 (181)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      .+++.+|++++|+|+++..+.+.  .++...+..   .++|+++++||+|+.+...  .+++.+.+..........++++
T Consensus       259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (439)
T 1mky_A          259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF  333 (439)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence            35577999999999987666543  233333332   4799999999999875432  3333322221112223447889


Q ss_pred             ccccCCCChHHHHHHHHHHhhh
Q 030192          158 TCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       158 ~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      +||++|.|++++|+.+.+.+.+
T Consensus       334 ~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          334 TSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999887654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.89  E-value=3e-22  Score=157.76  Aligned_cols=114  Identities=18%  Similarity=0.167  Sum_probs=89.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC------------------Cccc-------ccCccceeEEEEEECCEEEEEEEcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG------------------EIVT-------TIPTIGFNVETVEYKNISFTVWDVG   69 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~------------------~~~~-------~~~~~~~~~~~~~~~~~~~~i~D~~   69 (181)
                      .+..+|+++|++|+|||||+++|+..                  ....       ...|.......+...++.+++||||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            46689999999999999999999621                  1111       1224445566778889999999999


Q ss_pred             CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      |+.++...+..+++.+|++++|+|+++..+.+... .|.....    .++|+++++||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCccc
Confidence            99999999999999999999999999876655443 3443333    47899999999999754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.6e-23  Score=145.37  Aligned_cols=125  Identities=27%  Similarity=0.393  Sum_probs=95.8

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcccc----cCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccc----c
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN----T   85 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~   85 (181)
                      ....++|+++|++|||||||++++.+..+...    .++.+.     ......+.+|||||++.+...+..++..    +
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  119 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV  119 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence            35778999999999999999999998875432    222222     2256789999999999998888877776    8


Q ss_pred             cEEEEEEECC-CcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030192           86 QGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMNAAEITDKL  143 (181)
Q Consensus        86 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~  143 (181)
                      |++++|+|++ +++++.....|+..++...   ...++|+++|+||+|+.+....+++.+.+
T Consensus       120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l  181 (193)
T 2ged_A          120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL  181 (193)
T ss_dssp             EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence            9999999999 7888888888887776532   12479999999999998876666665544

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.89  E-value=2.9e-22  Score=148.19  Aligned_cols=154  Identities=19%  Similarity=0.107  Sum_probs=108.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc--ccC--ccceeEEEEEECCEEEEEEEcCCCC---------Ccccchhhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQD---------KIRPLWRHY   81 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~   81 (181)
                      .+..+|+++|++|+|||||+|++.+.....  ..+  |.......+...+..+.+|||||..         .+......+
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            345589999999999999999999987542  222  2222233456678899999999987         344455677


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCcccCcce-EEEEcc
Q 030192           82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHW-YIQSTC  159 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~S  159 (181)
                      ++.+|++++|+|+++   +.....++...+..   .+.|+++++||+|+.. .....+....+.    +..++ .++++|
T Consensus        86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~----~~~~~~~~i~iS  155 (301)
T 1ega_A           86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLA----SQMNFLDIVPIS  155 (301)
T ss_dssp             CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHH----TTSCCSEEEECC
T ss_pred             HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHH----HhcCcCceEEEE
Confidence            889999999999976   33333455555443   4789999999999876 222222222121    11122 688999


Q ss_pred             ccCCCChHHHHHHHHHHhh
Q 030192          160 ATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       160 ~~~~~gv~~~~~~i~~~~~  178 (181)
                      |+++.|++++++.+...+.
T Consensus       156 A~~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          156 AETGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTTTTTHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHhCC
Confidence            9999999999999987654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.89  E-value=2e-23  Score=162.54  Aligned_cols=156  Identities=24%  Similarity=0.290  Sum_probs=102.4

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCcccee----EEEEEECCEEEEEEEcCC--------CCCcccch
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGG--------QDKIRPLW   78 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~D~~g--------~~~~~~~~   78 (181)
                      ........+|+++|.+|||||||+|+|.+..+....++.+.+    ...+...+..+.+|||||        ++++...+
T Consensus        17 ~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~   96 (456)
T 4dcu_A           17 RGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA   96 (456)
T ss_dssp             ------CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred             ChhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence            334456789999999999999999999988765333333333    333444678999999999        55666677


Q ss_pred             hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEc
Q 030192           79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST  158 (181)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      ..+++.+|++++|+|..+.  +.....++...+..   .++|+++|+||+|+.+..  ....+.+.+    ..+ ..+++
T Consensus        97 ~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l----g~~-~~~~i  164 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL----GFG-EPYPI  164 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG----SSS-SEEEC
T ss_pred             HhhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHc----CCC-ceEEe
Confidence            8888999999999998653  44455667777665   579999999999986432  111111111    111 24589


Q ss_pred             cccCCCChHHHHHHHHHHhh
Q 030192          159 CATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       159 S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ||++|.|++++++.+.+.+.
T Consensus       165 SA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          165 SGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             CTTTCTTHHHHHHHHHTTGG
T ss_pred             ecccccchHHHHHHHHhhcc
Confidence            99999999999999987664

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.89  E-value=3.2e-22  Score=145.17  Aligned_cols=162  Identities=14%  Similarity=0.165  Sum_probs=105.1

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCc-cc-ccC---ccceeEEEEEECCEEEEEEEcCCCCCcccc----------
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI-VT-TIP---TIGFNVETVEYKNISFTVWDVGGQDKIRPL----------   77 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~-~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------   77 (181)
                      +....++|+++|++|+|||||++++.+... .. ..+   |.......+...+..+.+|||||..++...          
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            345779999999999999999999998763 32 222   334445566778899999999997654322          


Q ss_pred             -hhhccccccEEEEEEECCCcccH-HHHHHHHHHHHcCCCCCCCeEEEEEe-CCCCCCCCCHhH------------HHhh
Q 030192           78 -WRHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFAN-KQDLPNAMNAAE------------ITDK  142 (181)
Q Consensus        78 -~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~n-K~Dl~~~~~~~~------------~~~~  142 (181)
                       ...+++.+|++++|+|+++.... .....++.......  ...|.++++| |+|+... ...+            +...
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence             22366889999999999863322 22333444433211  1345666665 9999753 2332            2222


Q ss_pred             hCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192          143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       143 ~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      +.....   .+..+++||++|.|++++|..+.+.+.++
T Consensus       175 ~~~~~~---~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          175 CGGRIC---AFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             TTTCEE---ECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hCCeEE---EecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            222110   01116899999999999999999987653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.88  E-value=3.5e-23  Score=155.57  Aligned_cols=121  Identities=18%  Similarity=0.326  Sum_probs=92.4

Q ss_pred             CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC----------CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030192           59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQ  128 (181)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~  128 (181)
                      ..+.+++|||+|+++++..|..++++++++|+|||++          +..++.+...|+..+.......+.|+++++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            4589999999999999999999999999999999998          788999999999998887555689999999999


Q ss_pred             CCCCCCC-----------------------HhHHHhhhCCCc-----------ccCcceEEEEccccCCCChHHHHHHHH
Q 030192          129 DLPNAMN-----------------------AAEITDKLGLHS-----------LRQRHWYIQSTCATSGEGLYEGLDWLS  174 (181)
Q Consensus       129 Dl~~~~~-----------------------~~~~~~~~~~~~-----------~~~~~~~~~~~S~~~~~gv~~~~~~i~  174 (181)
                      |+.+...                       .++........+           .....+.+++|||+++.||+++|..+.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843210                       111111100000           012345678999999999999999999


Q ss_pred             HHhhh
Q 030192          175 NNIAS  179 (181)
Q Consensus       175 ~~~~~  179 (181)
                      +.+.+
T Consensus       341 ~~I~~  345 (354)
T 2xtz_A          341 ETLRR  345 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.88  E-value=1.3e-23  Score=165.08  Aligned_cols=158  Identities=16%  Similarity=0.101  Sum_probs=112.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCc--cceeEEEEEE-CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPT--IGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~--~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +..+|+++|++|+|||||+++|.+..+.. ..++  ..+....+.. .+..+.+|||||++.|...+..+++.+|++++|
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV   82 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV   82 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence            56889999999999999999998776542 2222  2222222333 345799999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCC-cccCcceEEEEccccCCCChHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLH-SLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      +|+++....+.. ..+.....    .++|+++++||+|+.+..  ...+....+... ......++++++||++|.|+++
T Consensus        83 VDa~dg~~~qt~-e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           83 VAADDGVMKQTV-ESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             CBSSSCCCHHHH-HHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EECCCCccHHHH-HHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            999876554433 33333332    478999999999987532  222222222211 1112357899999999999999


Q ss_pred             HHHHHHHHhh
Q 030192          169 GLDWLSNNIA  178 (181)
Q Consensus       169 ~~~~i~~~~~  178 (181)
                      +++.+...+.
T Consensus       158 Lle~I~~l~~  167 (537)
T 3izy_P          158 LAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhh
Confidence            9999987653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=4.8e-22  Score=152.76  Aligned_cols=161  Identities=17%  Similarity=0.093  Sum_probs=102.4

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCc---c-cccC--ccceeEEEEEE---------------C--------CEEE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI---V-TTIP--TIGFNVETVEY---------------K--------NISF   63 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~-~~~~--~~~~~~~~~~~---------------~--------~~~~   63 (181)
                      ..+..++|+++|+.++|||||+++|.+...   . +..+  |....+.....               .        ...+
T Consensus         4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   83 (408)
T 1s0u_A            4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV   83 (408)
T ss_dssp             -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence            446779999999999999999999986432   1 1122  44433322211               1        1689


Q ss_pred             EEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHH
Q 030192           64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEI  139 (181)
Q Consensus        64 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~  139 (181)
                      .+|||||+++|.......+..+|++++|+|+++........+.+..+...   ...|+++++||+|+.+...    .+++
T Consensus        84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i  160 (408)
T 1s0u_A           84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQI  160 (408)
T ss_dssp             EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred             EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHH
Confidence            99999999998888777788899999999998653222222222222111   2358999999999976532    2333


Q ss_pred             HhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      .+.+...  ...+++++++||++|.|++++++.+.+.+.
T Consensus       161 ~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          161 KEFVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHTTS--TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            3333211  123567999999999999999999988664

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.88  E-value=6e-23  Score=160.50  Aligned_cols=158  Identities=16%  Similarity=0.140  Sum_probs=109.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC----cc----cc--cCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE----IV----TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN   84 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~----~~----~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (181)
                      .+.++|+++|++++|||||+++|.+..    ..    +.  ..|....+..+...+..+.+|||||+++|......++..
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~   96 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   96 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence            467899999999999999999999876    21    11  224444455567788999999999999998888888999


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc----CcceEEEEccc
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR----QRHWYIQSTCA  160 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~  160 (181)
                      +|++++|+|+++...-+. .+.+. .+..   .++|+++++||+|+.+....++..+.+.. .++    -.+++++++||
T Consensus        97 aD~~ilVvda~~g~~~qt-~e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~-~l~~~~~~~~~~ii~vSA  170 (482)
T 1wb1_A           97 IDLALIVVDAKEGPKTQT-GEHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKS-ILQSTHNLKNSSIIPISA  170 (482)
T ss_dssp             CCEEEEEEETTTCSCHHH-HHHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHH-HHHHSSSGGGCCEEECCT
T ss_pred             CCEEEEEEecCCCccHHH-HHHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHH-HHhhhcccccceEEEEEC
Confidence            999999999987422221 22222 2222   36888999999999864322222221110 010    11567999999


Q ss_pred             cCCCChHHHHHHHHHHhh
Q 030192          161 TSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~  178 (181)
                      ++|.|++++++.+.+.+.
T Consensus       171 ~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          171 KTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHhhc
Confidence            999999999999988653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=5.5e-22  Score=157.94  Aligned_cols=154  Identities=21%  Similarity=0.235  Sum_probs=107.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC--cc---------cc---c----CccceeEEEEEEC-----CEEEEEEEcCCCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE--IV---------TT---I----PTIGFNVETVEYK-----NISFTVWDVGGQD   72 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~--~~---------~~---~----~~~~~~~~~~~~~-----~~~~~i~D~~g~~   72 (181)
                      +..+|+++|+.++|||||+++|+...  +.         ..   .    .|.......+.+.     .+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            45799999999999999999997621  11         00   0    1222222334332     4789999999999


Q ss_pred             CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCccc
Q 030192           73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLR  149 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~  149 (181)
                      +|...+..+++.+|++++|+|+++..+.+....|.... .    .++|+++++||+|+.+...   .+++.+.++...  
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~--  155 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA--  155 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC--
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc--
Confidence            99999999999999999999999877766666555443 2    3789999999999976431   233444443321  


Q ss_pred             CcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       150 ~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                         ..++++||++|.|++++++.+.+.+..
T Consensus       156 ---~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          156 ---TDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             ---TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             ---ceEEEeecccCCCchhHHHHHhhcCCC
Confidence               137799999999999999999987754

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.87  E-value=1.2e-21  Score=156.01  Aligned_cols=159  Identities=20%  Similarity=0.174  Sum_probs=107.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccccc-----CccceeEEEEE----------------ECCEEEEEEEcCCCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVE----------------YKNISFTVWDVGGQDK   73 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~   73 (181)
                      .+..+|+++|++|+|||||++++.+..+....     ++.+..+....                .....+++|||||+++
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            46789999999999999999999876543322     23333322211                1122699999999999


Q ss_pred             cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------Hh--
Q 030192           74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------AA--  137 (181)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------------~~--  137 (181)
                      |...+..+++.+|++++|+|+++.-..+.. ..+.....    .++|+++++||+|+.+...              .+  
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~-e~l~~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v  157 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQ-EALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV  157 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHH-HHHHHHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence            999999899999999999999883222221 22222222    4789999999999864211              01  


Q ss_pred             ---------HHHhhhCCCcc----------cCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          138 ---------EITDKLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       138 ---------~~~~~~~~~~~----------~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                               ++...+....+          ....++++++||++|.|++++++++...+.
T Consensus       158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                     11111111111          024568999999999999999999987653

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.87  E-value=5.6e-22  Score=153.49  Aligned_cols=158  Identities=16%  Similarity=0.065  Sum_probs=104.5

Q ss_pred             HHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCc---cc----------c-----------------------cCccce
Q 030192            8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI---VT----------T-----------------------IPTIGF   51 (181)
Q Consensus         8 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~----------~-----------------------~~~~~~   51 (181)
                      ++.+...+..++|+++|++++|||||+++|++...   ..          .                       ..|...
T Consensus        15 ~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~   94 (434)
T 1zun_B           15 YLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDV   94 (434)
T ss_dssp             -CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCC
T ss_pred             HHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEe
Confidence            33444445678999999999999999999975431   00          0                       112223


Q ss_pred             eEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           52 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      .+..+...+..+.+|||||+++|...+..++..+|++++|+|+++....+ ..+++......   ..+|+++++||+|+.
T Consensus        95 ~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~---~~~~iIvviNK~Dl~  170 (434)
T 1zun_B           95 AYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLN  170 (434)
T ss_dssp             EEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTT
T ss_pred             eeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEEcCcCC
Confidence            34456667889999999999999988888899999999999998765432 23333222221   124799999999997


Q ss_pred             CCC--CHhHHHh----hhCCCcccCcceEEEEccccCCCChHHH
Q 030192          132 NAM--NAAEITD----KLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus       132 ~~~--~~~~~~~----~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +..  ..+++..    .+....+....++++++||++|.|++++
T Consensus       171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            632  1111221    1111111123478999999999999874

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.87  E-value=6.5e-22  Score=153.12  Aligned_cols=154  Identities=18%  Similarity=0.185  Sum_probs=104.0

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCc--cc--------------------------------ccCccceeEEEEEEC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEI--VT--------------------------------TIPTIGFNVETVEYK   59 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~--------------------------------~~~~~~~~~~~~~~~   59 (181)
                      .+..++|+++|++|+|||||+++|++..-  ..                                ...|.......+...
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            45679999999999999999999955310  00                                112444445567778


Q ss_pred             CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCccc---HH---HHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCC
Q 030192           60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---VV---EARDELHRMLNEDELRDAV-LLVFANKQDLPN  132 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~  132 (181)
                      +..+.+|||||+++|......+++.+|++++|+|+++...   +.   ...+.+... ..   .++| +++++||+|+..
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~---~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT---AGVKHLIVLINKMDDPT  169 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH---cCCCeEEEEeecCCCcc
Confidence            8899999999999999998889999999999999987532   11   122222222 11   3555 999999999864


Q ss_pred             CC----CHhHHHh----hhCCCcccC-cceEEEEccccCCCChHHHHH
Q 030192          133 AM----NAAEITD----KLGLHSLRQ-RHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus       133 ~~----~~~~~~~----~~~~~~~~~-~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      ..    ..+++..    .+....+.. .+++++++||++|.|++++.+
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            21    1112222    111111111 256899999999999998654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.87  E-value=9.7e-22  Score=148.57  Aligned_cols=157  Identities=18%  Similarity=0.137  Sum_probs=104.1

Q ss_pred             ccE-EEEEcCCCCChHHHHhhHhcCCccc---ccCccceeEEEEEECCEEEEEEEcCCCCC---------cccchhhccc
Q 030192           17 EMR-ILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQ   83 (181)
Q Consensus        17 ~~~-i~i~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~   83 (181)
                      .++ |+++|++|+|||||+|++.+.....   ..+|.+.....+...+..+.+|||+|..+         +...+ ..+.
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~  256 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAK  256 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHH
Confidence            455 9999999999999999999877531   24455566677777888999999999622         22222 2467


Q ss_pred             cccEEEEEEECCCccc-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh--HH----HhhhCCCcccCcceEEE
Q 030192           84 NTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA--EI----TDKLGLHSLRQRHWYIQ  156 (181)
Q Consensus        84 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~----~~~~~~~~~~~~~~~~~  156 (181)
                      .+|++++|+|++++.+ .......+...+......+.|+++|+||+|+.+....+  +.    ...+.     ..+.+++
T Consensus       257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~-----~~~~~~~  331 (364)
T 2qtf_A          257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY-----SPIFDVI  331 (364)
T ss_dssp             GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC-----SCEEEEE
T ss_pred             hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc-----CCCCcEE
Confidence            8999999999987751 22222333333333333578999999999987643111  01    12221     1234678


Q ss_pred             EccccCCCChHHHHHHHHHHhhh
Q 030192          157 STCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       157 ~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      ++|++++.|++++++.+.+.+..
T Consensus       332 ~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          332 PISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEECCCCcCHHHHHHHHHHHhcc
Confidence            99999999999999999887653

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.87  E-value=1.6e-21  Score=155.12  Aligned_cols=155  Identities=21%  Similarity=0.229  Sum_probs=109.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC--cc---------cc-------cCccceeEEEEEE-----CCEEEEEEEcCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV---------TT-------IPTIGFNVETVEY-----KNISFTVWDVGGQ   71 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~---------~~-------~~~~~~~~~~~~~-----~~~~~~i~D~~g~   71 (181)
                      ++..+|+++|+.++|||||+++|+...  +.         ..       ..|.......+.+     ..+.+++|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            456799999999999999999997521  11         00       0122111223333     2478999999999


Q ss_pred             CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcc
Q 030192           72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL  148 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~  148 (181)
                      .+|...+..+++.+|++++|+|+++..+.+....|.... .    .++|+++++||+|+.+...   .+++.+.++..  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~--  156 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD--  156 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC--
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccCHHHHHHHHHHhhCCC--
Confidence            999998889999999999999999887777666655443 2    4799999999999976431   12333333322  


Q ss_pred             cCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       149 ~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                         ...++++||++|.|++++++.+.+.+..
T Consensus       157 ---~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          157 ---PEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             ---GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             ---cccEEEEEeecCCCchHHHHHHHHhccc
Confidence               1137899999999999999999987753

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.87  E-value=6.3e-22  Score=149.97  Aligned_cols=146  Identities=8%  Similarity=0.035  Sum_probs=108.2

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   98 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (181)
                      +|+++|++++|||||+++|.     ....|.+..+..+...+..+.+|||||+++|.......++.+|++++|+| +. .
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g   95 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-G   95 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-C
T ss_pred             EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-C
Confidence            99999999999999999998     33455566666677778899999999999998888888899999999999 53 3


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeE-EEEEe-CCCCCCCCCHh----HHHhhhCCCcccCcceEEEE--ccccC---CCChH
Q 030192           99 RVVEARDELHRMLNEDELRDAVL-LVFAN-KQDLPNAMNAA----EITDKLGLHSLRQRHWYIQS--TCATS---GEGLY  167 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~pi-ivv~n-K~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~S~~~---~~gv~  167 (181)
                      ......+++.....    .++|. ++++| |+|+ +....+    ++.+.+...  ....+++++  +||++   +.|++
T Consensus        96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~  168 (370)
T 2elf_A           96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD  168 (370)
T ss_dssp             CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred             CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence            33444444443332    35666 88888 9999 532222    222222211  113468999  99999   99999


Q ss_pred             HHHHHHHHHhh
Q 030192          168 EGLDWLSNNIA  178 (181)
Q Consensus       168 ~~~~~i~~~~~  178 (181)
                      ++++.+.+.+.
T Consensus       169 ~L~~~l~~~~~  179 (370)
T 2elf_A          169 ELKARINEVAE  179 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhhcc
Confidence            99999987754

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.87  E-value=8.5e-23  Score=158.04  Aligned_cols=152  Identities=18%  Similarity=0.190  Sum_probs=101.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC--Cccc--------------------------------ccCccceeEEEEEECC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVT--------------------------------TIPTIGFNVETVEYKN   60 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~--------------------------------~~~~~~~~~~~~~~~~   60 (181)
                      +..++|+++|++|+|||||+++|++.  .+..                                ...|.......+...+
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            56789999999999999999999764  2210                                1124444445567788


Q ss_pred             EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHH------HHHHHcCCCCCC-CeEEEEEeCCCCCCC
Q 030192           61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE------LHRMLNEDELRD-AVLLVFANKQDLPNA  133 (181)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~------~~~~~~~~~~~~-~piivv~nK~Dl~~~  133 (181)
                      ..+.+|||||+++|...+..+++.+|++++|+|+++ .+++....|      ....+..   .+ +|+++++||+|+.+.
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGGSSS
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---cCCCeEEEEEEcccCCCc
Confidence            999999999999999999999999999999999987 555433221      1111111   23 468999999999763


Q ss_pred             C----C----HhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192          134 M----N----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus       134 ~----~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      .    .    .+++...+....+....++++++||++|.|+.+++
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence            1    1    11222222111122224689999999999997543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=4.5e-22  Score=153.03  Aligned_cols=161  Identities=18%  Similarity=0.123  Sum_probs=108.6

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCc---c-cccC--ccceeEEEEEEC-----------------------CEEE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI---V-TTIP--TIGFNVETVEYK-----------------------NISF   63 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~-~~~~--~~~~~~~~~~~~-----------------------~~~~   63 (181)
                      ..+..++|+++|++++|||||+++|.+...   . +..+  |....+......                       ...+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            346678999999999999999999985432   1 1122  444443332220                       1689


Q ss_pred             EEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHH
Q 030192           64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEI  139 (181)
Q Consensus        64 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~  139 (181)
                      .+|||||+++|.......+..+|++++|+|+++........+.+..+...   ...|+++++||+|+.+...    .+++
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i  162 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQI  162 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence            99999999998887777788899999999998643112222222211111   2367999999999986432    2223


Q ss_pred             HhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ...+...  ...+++++++||++|.|++++++.+.+.+.
T Consensus       163 ~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          163 KEFIEGT--VAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHhc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            3322211  123568999999999999999999988654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.87  E-value=4.3e-22  Score=155.97  Aligned_cols=153  Identities=20%  Similarity=0.167  Sum_probs=103.0

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCC--ccc--------------------------------ccCccceeEEEEEEC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IVT--------------------------------TIPTIGFNVETVEYK   59 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~--------------------------------~~~~~~~~~~~~~~~   59 (181)
                      .+..++|+++|++|+|||||+++|++..  +..                                ...|.......+...
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~  109 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  109 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence            4567999999999999999999997541  000                                012444455667778


Q ss_pred             CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHH-----HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192           60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE-----ARDELHRMLNEDELRDAVLLVFANKQDLPNAM  134 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  134 (181)
                      +..+.+|||||+++|......+++.+|++++|+|+++......     ........+...  ..+|+|+++||+|+.+..
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence            8999999999999999999999999999999999987543211     222222222221  235799999999997622


Q ss_pred             --CHhHHHhhh----CCCcccCcceEEEEccccCCCChHH
Q 030192          135 --NAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus       135 --~~~~~~~~~----~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                        ..+++...+    ....+...+++++++||++|.|+++
T Consensus       188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence              122222211    1111223367899999999999985

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.86  E-value=1.2e-22  Score=158.54  Aligned_cols=155  Identities=19%  Similarity=0.189  Sum_probs=106.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cC--ccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+..+|+++|++++|||||+++|.+..+... .+  |.......+...+..+.+|||||++.|...+...+..+|++++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV   81 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV   81 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence            4678999999999999999999987554321 11  22222233444567899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--cccC--cceEEEEccccCCCChH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH--SLRQ--RHWYIQSTCATSGEGLY  167 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~S~~~~~gv~  167 (181)
                      +|+++....+. .+.+.....    .++|+++++||+|+.+... +++...+...  ....  ..++++++||++|.|++
T Consensus        82 Vda~~g~~~qT-~e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~  155 (501)
T 1zo1_I           82 VAADDGVMPQT-IEAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID  155 (501)
T ss_dssp             EETTTBSCTTT-HHHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred             eecccCccHHH-HHHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence            99987322111 122222222    4789999999999975311 1122211111  1111  24789999999999999


Q ss_pred             HHHHHHHH
Q 030192          168 EGLDWLSN  175 (181)
Q Consensus       168 ~~~~~i~~  175 (181)
                      ++++.+..
T Consensus       156 eLle~I~~  163 (501)
T 1zo1_I          156 ELLDAILL  163 (501)
T ss_dssp             THHHHTTT
T ss_pred             hhhhhhhh
Confidence            99999865

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.86  E-value=4.9e-22  Score=152.19  Aligned_cols=158  Identities=18%  Similarity=0.100  Sum_probs=108.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC-------cc------------cccCccceeEEEEEECCEEEEEEEcCCCCCccc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE-------IV------------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP   76 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~-------~~------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (181)
                      ..++|+++|++++|||||+++|.+..       +.            ....|.+.....+...+..+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            45899999999999999999998631       10            011233333444556778999999999999988


Q ss_pred             chhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-H----hHHHhhhCCCcccC
Q 030192           77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLRQ  150 (181)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~  150 (181)
                      ....+++.+|++++|+|+++....+. .+.+... ..   .++| +++++||+|+.+... .    +++.+.+....+..
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  156 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            88888999999999999987554333 3333222 22   3677 789999999975211 1    12222221111222


Q ss_pred             cceEEEEccccCCCC----------hHHHHHHHHHHhh
Q 030192          151 RHWYIQSTCATSGEG----------LYEGLDWLSNNIA  178 (181)
Q Consensus       151 ~~~~~~~~S~~~~~g----------v~~~~~~i~~~~~  178 (181)
                      ..++++++||++|.|          ++++++.+.+.+.
T Consensus       157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            246799999999764          8899998887654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.86  E-value=1.4e-21  Score=150.10  Aligned_cols=159  Identities=20%  Similarity=0.170  Sum_probs=110.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC--------Cccc------------ccCccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG--------EIVT------------TIPTIGFNVETVEYKNISFTVWDVGGQDKI   74 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~--------~~~~------------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (181)
                      +..++|+++|++|+|||||+++|.+.        .+..            ...|.......+...+..+.+|||||+++|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            56789999999999999999999873        1111            112333444456667789999999999999


Q ss_pred             ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCcc
Q 030192           75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSL  148 (181)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~----~~~~~~~~~~~  148 (181)
                      ......+++.+|++++|+|+++.... ...+++.....    .++| +++++||+|+.+... .+    ++.+.+....+
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~  163 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  163 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence            88888889999999999999876543 33444443332    3677 899999999974211 11    12222211111


Q ss_pred             cCcceEEEEccccCCCC------------------hHHHHHHHHHHhh
Q 030192          149 RQRHWYIQSTCATSGEG------------------LYEGLDWLSNNIA  178 (181)
Q Consensus       149 ~~~~~~~~~~S~~~~~g------------------v~~~~~~i~~~~~  178 (181)
                      ....++++++||++|.|                  ++++++.+.+.+.
T Consensus       164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            12246799999999987                  7788887776553

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.5e-22  Score=160.66  Aligned_cols=153  Identities=18%  Similarity=0.144  Sum_probs=103.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc--c--------------------------------ccCccceeEEEEEECC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--T--------------------------------TIPTIGFNVETVEYKN   60 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~--------------------------------~~~~~~~~~~~~~~~~   60 (181)
                      +..++|+++|++|+|||||+++|++....  .                                ...|.......+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            45789999999999999999999865321  0                                1124444455677788


Q ss_pred             EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc---cH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-
Q 030192           61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-  134 (181)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-  134 (181)
                      ..+.+|||||+++|......+++.+|++++|+|+++..   ++  ..............  ..+|+|+|+||+|+.+.. 
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence            99999999999999999999999999999999997531   10  01111111222221  235699999999997621 


Q ss_pred             -CHhHHHh----hhCCCcccCcceEEEEccccCCCChHHH
Q 030192          135 -NAAEITD----KLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus       135 -~~~~~~~----~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                       ..+++..    .+....+....++++++||++|.|++++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence             1112222    1111112223568999999999999865

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.85  E-value=6.6e-22  Score=141.83  Aligned_cols=167  Identities=13%  Similarity=0.107  Sum_probs=98.8

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccc-cC----ccceeEEEEEECCEEEEEEEcCCCC-----------Cc
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP----TIGFNVETVEYKNISFTVWDVGGQD-----------KI   74 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~----~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~   74 (181)
                      +.+....++|+++|++|+|||||+|++++..+... .+    |.......+...+..+.+|||||..           .+
T Consensus        23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence            34456779999999999999999999998876432 22    3444455677788999999999943           23


Q ss_pred             ccchhhccccccEEEEEEECCCcccH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcccC
Q 030192           75 RPLWRHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQ  150 (181)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~  150 (181)
                      ...+..+.+.+|++++|+|+++.... .....++...+...  ...|+++|+||+|+.+....++......   ....+.
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            34445556678999999999765442 22223333322211  2368999999999865433221111000   000111


Q ss_pred             cceEEEEccccC-----CCChHHHHHHHHHHhhh
Q 030192          151 RHWYIQSTCATS-----GEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       151 ~~~~~~~~S~~~-----~~gv~~~~~~i~~~~~~  179 (181)
                      .+..++.++...     +.++.+++..+.+.+.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            222344454443     36899999988877654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.85  E-value=7.9e-22  Score=144.16  Aligned_cols=157  Identities=15%  Similarity=0.234  Sum_probs=88.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-c-c-------cCccceeEEEEEE----CCEEEEEEEcCCCCC-------c
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T-T-------IPTIGFNVETVEY----KNISFTVWDVGGQDK-------I   74 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~-~-------~~~~~~~~~~~~~----~~~~~~i~D~~g~~~-------~   74 (181)
                      ...++|+++|.+|+|||||+|++++.... . .       .+|.+........    ..+.+.+|||||..+       +
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            45689999999999999999998776533 2 2       4556655544433    336999999999732       2


Q ss_pred             ccch-------hhccc-------------cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192           75 RPLW-------RHYFQ-------------NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM  134 (181)
Q Consensus        75 ~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  134 (181)
                      ..+.       ..++.             .+|+++++++.+.. ++......+...+..    ++|+++|+||+|+....
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence            2222       22222             37899999987642 222333334444443    79999999999987543


Q ss_pred             CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      +.......+. ..+...+++++++|++++.|++++++.+.+.+
T Consensus       161 e~~~~~~~i~-~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          161 ECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHH-HHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHH-HHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            3332222211 11223455678899999999999999987754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.85  E-value=7.3e-21  Score=140.47  Aligned_cols=156  Identities=19%  Similarity=0.194  Sum_probs=100.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-------cccCc----------------------cce--------------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPT----------------------IGF--------------   51 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-------~~~~~----------------------~~~--------------   51 (181)
                      ....+|+++|.+|+|||||+|+|.+..+.       +..|+                      ...              
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            35679999999999999999999988753       11222                      000              


Q ss_pred             -----------eEEEEEE-CCEEEEEEEcCCCC-------------CcccchhhccccccEEE-EEEECCCcccHHHHHH
Q 030192           52 -----------NVETVEY-KNISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLI-FVVDSNDRDRVVEARD  105 (181)
Q Consensus        52 -----------~~~~~~~-~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~  105 (181)
                                 ....+.. ....+.+|||||..             .+......+++.++.++ +|+|+++..+......
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                       0001111 14689999999953             23445667778888776 6999976544333222


Q ss_pred             HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192          106 ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus       106 ~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                      + ...+..   .+.|+++|+||+|+.+... ..+..+. ..........+++++||++|.|++++++.+.+
T Consensus       184 ~-~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          184 I-AKEVDP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             H-HHHHCT---TCSSEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             H-HHHhCC---CCCeEEEEEEccccCCCCchHHHHHhC-CcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            3 333332   4789999999999876433 2222211 11111112247889999999999999998765

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.85  E-value=1.4e-22  Score=157.99  Aligned_cols=157  Identities=15%  Similarity=0.163  Sum_probs=91.4

Q ss_pred             HhhhcccccEEEEEcCCCCChHHHHhhHhcC--Ccc--------------------------------cccCccceeEEE
Q 030192           10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVET   55 (181)
Q Consensus        10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~--------------------------------~~~~~~~~~~~~   55 (181)
                      +....+..++|+++|++++|||||+++|+..  .+.                                ....|.+..+..
T Consensus        36 ~~~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~  115 (467)
T 1r5b_A           36 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY  115 (467)
T ss_dssp             HHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE
T ss_pred             HhhcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEE
Confidence            3344567789999999999999999999641  110                                012244444445


Q ss_pred             EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc---cHH---HHHHHHHHHHcCCCCCCCe-EEEEEeCC
Q 030192           56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDAV-LLVFANKQ  128 (181)
Q Consensus        56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iivv~nK~  128 (181)
                      +...+..+.+|||||+++|......+++.+|++++|+|+++..   +|.   ...+.+.....    .++| +++++||+
T Consensus       116 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~  191 (467)
T 1r5b_A          116 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKM  191 (467)
T ss_dssp             EECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECT
T ss_pred             EecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECc
Confidence            6667889999999999999998888899999999999998752   111   11111211111    3566 99999999


Q ss_pred             CCCCCC-C---Hh----HHHhhhCCC-ccc-CcceEEEEccccCCCChHHHH
Q 030192          129 DLPNAM-N---AA----EITDKLGLH-SLR-QRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus       129 Dl~~~~-~---~~----~~~~~~~~~-~~~-~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |+.... .   .+    ++...+... .+. ..+++++++||++|.|+++++
T Consensus       192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            996421 1   11    122221111 111 135789999999999998754

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.84  E-value=1.5e-19  Score=142.46  Aligned_cols=115  Identities=22%  Similarity=0.200  Sum_probs=84.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC--cc----------------c-------ccCccceeEEEEEECCEEEEEEEcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV----------------T-------TIPTIGFNVETVEYKNISFTVWDVG   69 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~----------------~-------~~~~~~~~~~~~~~~~~~~~i~D~~   69 (181)
                      ++..+|+++|++|+|||||+++|+...  +.                .       ...|.......+...+..+++||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            567899999999999999999998631  10                0       0012223345577789999999999


Q ss_pred             CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192           70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM  134 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  134 (181)
                      |+.+|......+++.+|++++|+|+++....+ ....+. .+..   .++|+++++||+|+....
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~-~~~~---~~ipiivviNK~Dl~~~~  150 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLME-VTRL---RDTPILTFMNKLDRDIRD  150 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHH-HHTT---TTCCEEEEEECTTSCCSC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHH-HHHH---cCCCEEEEEcCcCCcccc
Confidence            99999988888999999999999998754322 223333 3332   478999999999997643

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.84  E-value=1.9e-22  Score=160.98  Aligned_cols=150  Identities=19%  Similarity=0.182  Sum_probs=83.6

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcc----------------------------------cccCccceeEEEEEEC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV----------------------------------TTIPTIGFNVETVEYK   59 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~----------------------------------~~~~~~~~~~~~~~~~   59 (181)
                      .+..++|+++|++|+|||||+++|++....                                  ....|.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            456789999999999999999999642100                                  0011333333445556


Q ss_pred             CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc---cH---HHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCC
Q 030192           60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAV-LLVFANKQDLPN  132 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~  132 (181)
                      +..+.+|||||+.+|......++..+|++|+|+|+++..   ++   ......+. .+..   .++| +|+|+||+|+.+
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~-~~~~---lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY-LLRA---LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH-HHHH---SSCCCEEEEEECGGGGT
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH-HHHH---cCCCeEEEEEecccccc
Confidence            788999999999999999888999999999999997532   11   11111111 2221   2454 999999999975


Q ss_pred             CC--CH----hHHHhhh-CCCcccCcceEEEEccccCCCChH
Q 030192          133 AM--NA----AEITDKL-GLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus       133 ~~--~~----~~~~~~~-~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      ..  ..    +++...+ ....+...+++++++||++|.|++
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            21  11    2233333 223333446789999999999998

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.84  E-value=9.2e-22  Score=148.79  Aligned_cols=159  Identities=14%  Similarity=0.240  Sum_probs=84.3

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcc-cc---------cCccceeEEEE--EEC--CEEEEEEEcCCC-------C
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TT---------IPTIGFNVETV--EYK--NISFTVWDVGGQ-------D   72 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~---------~~~~~~~~~~~--~~~--~~~~~i~D~~g~-------~   72 (181)
                      ....++|+++|++|+|||||++++.+.... ..         .++.+.....+  ...  ...+.+|||||.       +
T Consensus        34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e  113 (361)
T 2qag_A           34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD  113 (361)
T ss_dssp             HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred             CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence            356689999999999999999998665432 11         13444433332  222  347999999998       6


Q ss_pred             Ccccchh-------hcccccc-------------EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           73 KIRPLWR-------HYFQNTQ-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        73 ~~~~~~~-------~~~~~~d-------------~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      .+..++.       .+++.++             +++|+++.+ ..++......+...+.    .++|+|+|+||+|+..
T Consensus       114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~  188 (361)
T 2qag_A          114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLT  188 (361)
T ss_dssp             --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCC
Confidence            6666655       5555443             344444432 4455555544444443    4789999999999876


Q ss_pred             CCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      ..+...+.... ...++..+++++++||+++.| ++.|..+.+.+.+
T Consensus       189 ~~ev~~~k~~i-~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          189 LKERERLKKRI-LDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             HHHHHHHHHHH-HHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence            43332221111 122334567889999999998 8888887777654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.83  E-value=5.3e-21  Score=148.75  Aligned_cols=151  Identities=16%  Similarity=0.128  Sum_probs=102.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC--Ccc--------------------------------cccCccceeEEEEEECC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYKN   60 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~--------------------------------~~~~~~~~~~~~~~~~~   60 (181)
                      +..++|+++|++|+|||||+++|++.  .+.                                ....|....+..+...+
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            45689999999999999999999764  111                                01235555556777788


Q ss_pred             EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc---cHH---HHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCC
Q 030192           61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDA-VLLVFANKQDLPNA  133 (181)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-piivv~nK~Dl~~~  133 (181)
                      ..+.+|||||+++|......++..+|++++|+|+++..   +++   ...+.+... ..   .++ ++++++||+|+.+.
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~~  160 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKW  160 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTT
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEccccccC
Confidence            99999999999999998889999999999999997542   110   222222222 21   345 49999999999731


Q ss_pred             --CCHhH----HHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192          134 --MNAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus       134 --~~~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                        ...++    +...+....+...+++++++||++|.|++++
T Consensus       161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence              11111    2211111111122467999999999998743

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.83  E-value=1.1e-19  Score=147.37  Aligned_cols=115  Identities=23%  Similarity=0.144  Sum_probs=87.9

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcC--Cc------------c-------cccCccceeEEEEEECCEEEEEEEcCCCC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLG--EI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQD   72 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~------------~-------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (181)
                      .++..+|+++|++|+|||||+++|+..  .+            .       ...+|.......+...++.+++|||||+.
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~   88 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV   88 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence            356789999999999999999999831  11            0       11334555556677789999999999999


Q ss_pred             CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      +|...+..+++.+|++++|+|+++..+.+....| .....    .++|+++++||+|+...
T Consensus        89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred             chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCcccC
Confidence            9999999999999999999999987776655443 33333    37899999999998764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.83  E-value=7.1e-20  Score=132.98  Aligned_cols=123  Identities=13%  Similarity=0.172  Sum_probs=85.1

Q ss_pred             HHHHhhhc--ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccchhh
Q 030192            7 KLFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH   80 (181)
Q Consensus         7 ~~~~~~~~--~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (181)
                      .+++++..  .+.++|+++|++|+|||||+|++.+....  ...+  +.......+...+..+.+|||||+.++......
T Consensus        24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~  103 (262)
T 3def_A           24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQ  103 (262)
T ss_dssp             HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHH
T ss_pred             HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHH
Confidence            34444443  36799999999999999999999988753  2222  444455667778899999999999887665544


Q ss_pred             ccc---------cccEEEEEEECCCcccHHHHH-HH---HHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           81 YFQ---------NTQGLIFVVDSNDRDRVVEAR-DE---LHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        81 ~~~---------~~d~~i~v~d~~~~~s~~~~~-~~---~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      +++         .+|++++|++++... +.... .+   +......  ....|+++|+||+|+.+
T Consensus       104 ~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          104 ALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGK--EIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             HHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCG--GGGGGEEEEEECTTCCC
T ss_pred             HHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhch--hhhcCEEEEEeCcccCC
Confidence            443         789999999987643 32222 22   3322221  01248999999999864

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.82  E-value=4.3e-20  Score=154.07  Aligned_cols=159  Identities=18%  Similarity=0.133  Sum_probs=107.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC-------ccc--------ccC----ccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE-------IVT--------TIP----TIGFNVETVEYKNISFTVWDVGGQDKIR   75 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~-------~~~--------~~~----~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (181)
                      +..++|+++|++++|||||+++|.+..       +..        ..+    |.......+...+..+.+|||||+++|.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            456899999999999999999998631       000        011    2222233456677899999999999998


Q ss_pred             cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-H----hHHHhhhCCCccc
Q 030192           76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLR  149 (181)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~  149 (181)
                      .....+++.+|++|+|+|+++....+ ..+++.....    .++| +|+++||+|+.+... .    +++.+.+....+.
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            88888899999999999998754332 2333332222    3577 899999999975211 1    1222222111122


Q ss_pred             CcceEEEEccccCC--------CChHHHHHHHHHHhh
Q 030192          150 QRHWYIQSTCATSG--------EGLYEGLDWLSNNIA  178 (181)
Q Consensus       150 ~~~~~~~~~S~~~~--------~gv~~~~~~i~~~~~  178 (181)
                      ...++++++||++|        .|++++++.+.+.+.
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            23468999999999        468899988877553

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.81  E-value=4.3e-19  Score=143.54  Aligned_cols=114  Identities=15%  Similarity=0.089  Sum_probs=85.6

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcc--------------c-------ccCccceeEEEEEECCEEEEEEEcCCC
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV--------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQ   71 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--------------~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (181)
                      ..++..+|+++|+.|+|||||++++.+....              .       ...+.......+....+.+++|||||+
T Consensus         5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~   84 (665)
T 2dy1_A            5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY   84 (665)
T ss_dssp             -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred             ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence            3456789999999999999999999843211              0       011333344556678899999999999


Q ss_pred             CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      .++...+..+++.+|++++|+|+++....+ ...++.....    .++|+++++||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence            999988899999999999999987654433 2344444433    378999999999987

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.81  E-value=1.7e-19  Score=134.09  Aligned_cols=160  Identities=17%  Similarity=0.178  Sum_probs=97.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-c------ccCccceeEE---------------------------------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T------TIPTIGFNVE---------------------------------   54 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~------~~~~~~~~~~---------------------------------   54 (181)
                      ....+|+++|++|+|||||+|++.+..+. .      ..|+.-....                                 
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            35679999999999999999999988752 1      1110000000                                 


Q ss_pred             --------------------E---EEECCEEEEEEEcCCCCC-------------cccchhhccccccEEEEEEECCCcc
Q 030192           55 --------------------T---VEYKNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRD   98 (181)
Q Consensus        55 --------------------~---~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~   98 (181)
                                          .   .......+.+|||||..+             +......+++.+|++++|+|.++..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                                0   111346799999999753             3445667788999999999975332


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccC---CCChHHHHHHHH
Q 030192           99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS---GEGLYEGLDWLS  174 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~gv~~~~~~i~  174 (181)
                      ........+...+..   .+.|+++|+||+|+.+... ..+..+. ........-+++..+|+.+   +.|+++++..+.
T Consensus       182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~  257 (315)
T 1jwy_B          182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTG-RVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI  257 (315)
T ss_dssp             STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTT-SSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhC-CCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence            111111123333333   4789999999999876543 1222221 0111111123455566666   889999999887


Q ss_pred             HHhh
Q 030192          175 NNIA  178 (181)
Q Consensus       175 ~~~~  178 (181)
                      ..+.
T Consensus       258 ~~~~  261 (315)
T 1jwy_B          258 LYFK  261 (315)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7664

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.81  E-value=3.3e-20  Score=141.09  Aligned_cols=132  Identities=27%  Similarity=0.381  Sum_probs=103.8

Q ss_pred             ccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCC----------cccHHHHHHHHHHHHcCCCCC
Q 030192           48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR  117 (181)
Q Consensus        48 ~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~  117 (181)
                      |+|+....+...++.+++|||+|+++++..|..++++++++|+|||+++          ..++.+...|+..+.......
T Consensus       204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~  283 (402)
T 1azs_C          204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR  283 (402)
T ss_dssp             CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred             eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence            5667777788889999999999999999999999999999999999998          889999999999998876567


Q ss_pred             CCeEEEEEeCCCCCCCCC--------------------------------HhHHHhhhCCCcc--------cCcceEEEE
Q 030192          118 DAVLLVFANKQDLPNAMN--------------------------------AAEITDKLGLHSL--------RQRHWYIQS  157 (181)
Q Consensus       118 ~~piivv~nK~Dl~~~~~--------------------------------~~~~~~~~~~~~~--------~~~~~~~~~  157 (181)
                      ++|++|++||+|+.....                                .++........+.        ....+.+++
T Consensus       284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~  363 (402)
T 1azs_C          284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF  363 (402)
T ss_dssp             SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred             CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence            899999999999843110                                0111111000000        113567889


Q ss_pred             ccccCCCChHHHHHHHHHHhhh
Q 030192          158 TCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       158 ~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      |||+++.||+++|..+.+.+..
T Consensus       364 TSA~d~~nV~~vF~~v~~~I~~  385 (402)
T 1azs_C          364 TCAVDTENIRRVFNDCRDIIQR  385 (402)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEeecCcCHHHHHHHHHHHHHH
Confidence            9999999999999999887754

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.81  E-value=1.1e-18  Score=141.69  Aligned_cols=116  Identities=20%  Similarity=0.152  Sum_probs=88.1

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhc--CCcc------------c-------ccCccceeEEEEEECCEEEEEEEcCCC
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKL--GEIV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQ   71 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~------------~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (181)
                      ..++..+|+++|++|+|||||+++|+.  ..+.            .       ...|.......+...+..+++|||||+
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~   85 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH   85 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence            346678999999999999999999984  2211            0       112333445567778899999999999


Q ss_pred             CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      .++...+..+++.+|++++|+|+++..+.+.... |.....    .++|+++++||+|+...
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~~~~----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQATT----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHHHHH----cCCCEEEEEECCCcccc
Confidence            9999999999999999999999998766655443 333333    37899999999999764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.81  E-value=1.8e-19  Score=126.41  Aligned_cols=159  Identities=16%  Similarity=0.179  Sum_probs=97.8

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECCEEEEEEEcCCCCC----------cccch
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IRPLW   78 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~----------~~~~~   78 (181)
                      +......+|+++|++|||||||++++.+..+. ...|+.+...  ..+...+ .+.+||+||...          +....
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            55577889999999999999999999987732 2334444322  1222222 578999999743          22222


Q ss_pred             hhcc---ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcccCc
Q 030192           79 RHYF---QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQR  151 (181)
Q Consensus        79 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~  151 (181)
                      ..++   ..++++++|+|++.+.+....  .+..++..   .+.|+++++||+|+.+...    ...+...+...   ..
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~---~~  171 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAF---NG  171 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG---CS
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc---CC
Confidence            3333   468999999999876654321  11222222   4688999999999865321    11222222111   12


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          152 HWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       152 ~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      .+.++++|++++.|++++++.+.+.+.+
T Consensus       172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          172 DVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            3578899999999999999999887643

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.80  E-value=8.5e-20  Score=148.18  Aligned_cols=159  Identities=19%  Similarity=0.246  Sum_probs=105.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc--ccCccc-eeEE--------EEE--------------------------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIG-FNVE--------TVE--------------------------   57 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~-~~~~--------~~~--------------------------   57 (181)
                      ...++|+++|++|+|||||+|+|++.....  ..|++. ....        ...                          
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            578999999999999999999999877432  233321 0000        010                          


Q ss_pred             --------------------ECC----EEEEEEEcCCCCC---cccchhhccccccEEEEEEECCCcccHHHHHHHHHHH
Q 030192           58 --------------------YKN----ISFTVWDVGGQDK---IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM  110 (181)
Q Consensus        58 --------------------~~~----~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  110 (181)
                                          ...    ..+.+|||||...   .......+++++|++++|+|++++.+......+ ...
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l-~~~  225 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYL-ENY  225 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH-HHH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH-HHH
Confidence                                000    3589999999543   345566788899999999999887776555433 333


Q ss_pred             HcCCCCCCCeEEEEEeCCCCCCCC-----CHhH-------HHhh----hCCCccc-----CcceEEEEcccc--------
Q 030192          111 LNEDELRDAVLLVFANKQDLPNAM-----NAAE-------ITDK----LGLHSLR-----QRHWYIQSTCAT--------  161 (181)
Q Consensus       111 ~~~~~~~~~piivv~nK~Dl~~~~-----~~~~-------~~~~----~~~~~~~-----~~~~~~~~~S~~--------  161 (181)
                      +..   .+.|+++|+||+|+....     ..++       +.+.    +. ....     ....+++++||+        
T Consensus       226 l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~-~~~~~~g~~~~~~~v~~vSAk~al~~~~~  301 (695)
T 2j69_A          226 IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLA-EYCTVEGQNIYDERVFELSSIQALRRRLK  301 (695)
T ss_dssp             TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHG-GGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred             HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHH-HhhcccccccCCCcEEEEeChHHHHhhcc
Confidence            332   367899999999986432     1111       1111    11 1111     123468899999        


Q ss_pred             ------CCCChHHHHHHHHHHhh
Q 030192          162 ------SGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       162 ------~~~gv~~~~~~i~~~~~  178 (181)
                            ++.|+++++..+.+.+.
T Consensus       302 ~~~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          302 NPQADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             CTTCCCTTSSHHHHHHHHHHHHH
T ss_pred             CchhhhhccCHHHHHHHHHHHHH
Confidence                  99999999999988664

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.79  E-value=4.2e-18  Score=138.43  Aligned_cols=115  Identities=16%  Similarity=0.045  Sum_probs=85.2

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCC--cc------------c-------ccCccceeEEEEEECC-------EEEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV------------T-------TIPTIGFNVETVEYKN-------ISFTV   65 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~------------~-------~~~~~~~~~~~~~~~~-------~~~~i   65 (181)
                      .++..+|+++|+.|+|||||+++|+...  +.            .       ...|.......+.+.+       +.+++
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            3567899999999999999999997431  11            0       1123333334455555       89999


Q ss_pred             EEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        66 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      |||||+.+|...+..+++.+|++++|+|+++....+.. ..|.....    .++|+++++||+|+...
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK----YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCEEEEEeCCCcccc
Confidence            99999999999999999999999999999876554433 33433332    47899999999998653

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=1.7e-18  Score=126.24  Aligned_cols=118  Identities=11%  Similarity=0.060  Sum_probs=79.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc--cC--ccceeEEEEEECCEEEEEEEcCCCCCcccchh-------hc--
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWR-------HY--   81 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~--   81 (181)
                      ...++|+++|.+|+|||||+|++.+..+...  .+  +.......+...+..+.+|||||..++.....       .+  
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            3578999999999999999999998875322  12  22333445667889999999999876653322       11  


Q ss_pred             cccccEEEEEEECCCcccHHHHH-HHHHHHHcCCC-CCCCeEEEEEeCCCCCCC
Q 030192           82 FQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDE-LRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~-~~~~piivv~nK~Dl~~~  133 (181)
                      .+.+|++++|+|++.. ++.... .++..+..... ....|+++|+||+|+..+
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence            2469999999998653 333332 33333322111 012699999999998754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.78  E-value=2.5e-18  Score=131.71  Aligned_cols=156  Identities=22%  Similarity=0.224  Sum_probs=105.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECC-EEEEEEEcCCCCCc----ccchh---hcccccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKI----RPLWR---HYFQNTQ   86 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~----~~~~~---~~~~~~d   86 (181)
                      -.|+++|++|||||||++++.+.... ..  ..|.......+...+ ..+.+||+||..+.    ..+..   .....++
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            46899999999999999999887532 11  223333444455554 78999999997432    11222   2235699


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      .++.|+|++ .+.+.....++.+..... .....|.++++||+|+......+++.+.+     +..+++++.+||+++.|
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~g  311 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAG  311 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTT
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccC
Confidence            999999998 556666655555443321 11357899999999987642222333322     12345688999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030192          166 LYEGLDWLSNNIAS  179 (181)
Q Consensus       166 v~~~~~~i~~~~~~  179 (181)
                      ++++++.+.+.+.+
T Consensus       312 i~eL~~~i~~~l~~  325 (416)
T 1udx_A          312 LPALKEALHALVRS  325 (416)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.76  E-value=9.4e-19  Score=132.46  Aligned_cols=150  Identities=16%  Similarity=0.182  Sum_probs=93.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccc-cC--ccce-----------------------------------------
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIGF-----------------------------------------   51 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~--~~~~-----------------------------------------   51 (181)
                      .-.+|+++|++|||||||+|++.+..+... ..  |...                                         
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            344999999999999999999999765211 00  0000                                         


Q ss_pred             -----------e--EEEEEE-CCEEEEEEEcCCCCCc-------------ccchhhccccccEEEEEEECCCcccHHHHH
Q 030192           52 -----------N--VETVEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR  104 (181)
Q Consensus        52 -----------~--~~~~~~-~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  104 (181)
                                 .  ...+.. ....+.+|||||..++             ......+++++|++++|+|.++.+..... 
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~-  191 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD-  191 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH-
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH-
Confidence                       0  001111 2456899999997765             55677888999999999987654433211 


Q ss_pred             HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192          105 DELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus       105 ~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                        +..++......+.|+++|+||+|+.+... ..+..+.    .....+..|+++|+..+.++++.+..
T Consensus       192 --~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          192 --AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             --HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             --HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcC----ccccccCCeEEEEECChHHhccCCCH
Confidence              12222222225789999999999876432 2222221    12233456778999988877765444

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.75  E-value=3.3e-18  Score=129.12  Aligned_cols=155  Identities=19%  Similarity=0.194  Sum_probs=94.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-------cccCcc--------------------------------------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTI--------------------------------------   49 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-------~~~~~~--------------------------------------   49 (181)
                      ....+|+++|.+|+|||||+|+|.+..+.       +..|+.                                      
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            35679999999999999999999987753       111220                                      


Q ss_pred             -----cee----EEEEEE-CCEEEEEEEcCCCCC-------------cccchhhccccccEEE-EEEECCCcccHHHHHH
Q 030192           50 -----GFN----VETVEY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLI-FVVDSNDRDRVVEARD  105 (181)
Q Consensus        50 -----~~~----~~~~~~-~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~  105 (181)
                           ++.    ...+.. ....+.+|||||..+             +......++.+++.++ +|.|++....-.....
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                 000    011122 246799999999532             3345556666655555 4666654222122222


Q ss_pred             HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcc-eEEEEccccCCCChHHHHHHHHH
Q 030192          106 ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus       106 ~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                       +...+..   .+.|+++|+||+|+.+... ..++.+  ........+ ..++++||+++.|++++++.+.+
T Consensus       189 -i~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~--~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 -VAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             -HHHHHCT---TCTTEEEEEECGGGSCTTCCCHHHHT--TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             -HHHHhCc---CCCceEEEeccccccCcchhHHHHHh--CCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence             2233332   4789999999999876432 222222  111111223 36889999999999999988865

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.75  E-value=4.8e-17  Score=128.79  Aligned_cols=114  Identities=18%  Similarity=0.176  Sum_probs=86.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC------------------cccc-------cCccceeEEEEEECCEEEEEEEcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE------------------IVTT-------IPTIGFNVETVEYKNISFTVWDVG   69 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~------------------~~~~-------~~~~~~~~~~~~~~~~~~~i~D~~   69 (181)
                      .+..+|+|+|+.++|||||.++++...                  ....       .-|+......+.+.++.++++|||
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP  108 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP  108 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence            366899999999999999999996311                  1111       114444456788899999999999


Q ss_pred             CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      |+.+|.......++-+|++|+|+|+...-..+. ...|.....    .++|+++++||+|....
T Consensus       109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~----~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRM----RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred             CcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHH----hCCceEEEEecccchhc
Confidence            999999999999999999999999976544433 334455544    48999999999998653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.72  E-value=1.5e-18  Score=128.27  Aligned_cols=159  Identities=14%  Similarity=0.193  Sum_probs=77.1

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcC-Cccccc---------CccceeEEEE----EECCEEEEEEEcCCC-------C
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLG-EIVTTI---------PTIGFNVETV----EYKNISFTVWDVGGQ-------D   72 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~-~~~~~~---------~~~~~~~~~~----~~~~~~~~i~D~~g~-------~   72 (181)
                      ..-.++|+++|++|+|||||++++.+. .++...         ++.......+    ......+.+||++|.       +
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            356689999999999999999998765 332211         2222221111    123568999999997       4


Q ss_pred             Ccccchh-------hcccc-------------ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           73 KIRPLWR-------HYFQN-------------TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        73 ~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      .+.....       .+++.             +++++++.+.+. .++......+...+.    .+.|+++|+||.|+..
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTLT  169 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHT----TTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHH----hcCCEEEEEEeCCCCC
Confidence            5554443       34333             233555555432 122222222222222    3578999999999875


Q ss_pred             CCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      ..+.....+. ....++..+++++++||+++ |++++|..+.+.+.+
T Consensus       170 ~~e~~~~~~~-~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          170 LKERERLKKR-ILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HHHHHHHHHH-HHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             HHHHHHHHHH-HHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            3222111111 11122334557889999999 999999999987754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.72  E-value=8e-18  Score=127.10  Aligned_cols=152  Identities=15%  Similarity=0.169  Sum_probs=94.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC------Cc--ccccCccc---------------------eeEEE----------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTIG---------------------FNVET----------   55 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~------~~--~~~~~~~~---------------------~~~~~----------   55 (181)
                      .+...|+++|.+|+|||||+++|...      +.  ....|...                     .....          
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~  156 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV  156 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence            46789999999999999999999532      10  01111000                     00000          


Q ss_pred             ----------EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030192           56 ----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA  125 (181)
Q Consensus        56 ----------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~  125 (181)
                                +...++.+.++||||....   .......+|++++|+|....+..+...         ......|+++|+
T Consensus       157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVl  224 (355)
T 3p32_A          157 TRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVV  224 (355)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEE
T ss_pred             hHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEE
Confidence                      0124678999999995332   233457899999999987654432221         111346899999


Q ss_pred             eCCCCCCCCCHh----HHHhhhCCC--cccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          126 NKQDLPNAMNAA----EITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       126 nK~Dl~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ||+|+.+.....    ++...+...  ....++.+++++||++|.|++++++.+.+.+.
T Consensus       225 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~  283 (355)
T 3p32_A          225 NKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ  283 (355)
T ss_dssp             ECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred             ECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            999986532222    222222111  01123457899999999999999999988764

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.71  E-value=2.5e-17  Score=113.60  Aligned_cols=173  Identities=21%  Similarity=0.333  Sum_probs=115.8

Q ss_pred             HHHHHhhhcccccEEEEEcCC-CCChHHHHhhHhcCCccc---ccC-----cc--ceeE-----EEEEE-----------
Q 030192            6 TKLFSRLFAKKEMRILMVGLD-AAGKTTILYKLKLGEIVT---TIP-----TI--GFNV-----ETVEY-----------   58 (181)
Q Consensus         6 ~~~~~~~~~~~~~~i~i~G~~-~~GKSsli~~l~~~~~~~---~~~-----~~--~~~~-----~~~~~-----------   58 (181)
                      +.++.++......+++++||. ..=+.+|+.+++...-..   ..+     .+  |+.+     +.++.           
T Consensus         5 ~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er   84 (227)
T 3l82_B            5 TSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKER   84 (227)
T ss_dssp             CCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC-----
T ss_pred             HHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHh
Confidence            345677778889999999982 445568999998755111   111     11  1111     01110           


Q ss_pred             -----CC----EEEEEEEcC------CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHH---HHHHcCCC-CCCC
Q 030192           59 -----KN----ISFTVWDVG------GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL---HRMLNEDE-LRDA  119 (181)
Q Consensus        59 -----~~----~~~~i~D~~------g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~  119 (181)
                           ++    -++-...+|      |+...+..|.+|++++|++|||+|+++.+.+. ....+   ..++.+.. ..+.
T Consensus        85 ~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~ga  163 (227)
T 3l82_B           85 DRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGR  163 (227)
T ss_dssp             --------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCS
T ss_pred             hhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCC
Confidence                 00    012222333      78889999999999999999999999876654 44434   34444432 3689


Q ss_pred             eEEEEEeCC-CCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192          120 VLLVFANKQ-DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       120 piivv~nK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      |++|++||. |+.......++.+.+++..+ ...|.+..|||++|+|+.+.++|+.+.+..|
T Consensus       164 pLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          164 PLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             CEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             eEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            999999995 78888889999999998877 4799999999999999999999999988765

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.71  E-value=3.1e-17  Score=115.96  Aligned_cols=156  Identities=15%  Similarity=0.144  Sum_probs=95.7

Q ss_pred             HHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcc-------cccCcc----------ceeEEEEE--------------
Q 030192            9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTI----------GFNVETVE--------------   57 (181)
Q Consensus         9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-------~~~~~~----------~~~~~~~~--------------   57 (181)
                      .......+..+|+++|.+|+|||||+++|.+....       ...+..          +.....+.              
T Consensus        22 ~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (221)
T 2wsm_A           22 REALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYH  101 (221)
T ss_dssp             HHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHT
T ss_pred             HHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHH
Confidence            33444457789999999999999999999764210       011110          11111111              


Q ss_pred             ----ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           58 ----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        58 ----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                          ..+..+.+|||+|+....   ..+....+.+++|+|+.......  .. +...      .+.|+++++||+|+.+.
T Consensus       102 ~~~~~~~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~~--~~-~~~~------~~~~~iiv~NK~Dl~~~  169 (221)
T 2wsm_A          102 RLKKFSDCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDVV--EK-HPEI------FRVADLIVINKVALAEA  169 (221)
T ss_dssp             TGGGGTTCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTHH--HH-CHHH------HHTCSEEEEECGGGHHH
T ss_pred             HHHhcCCCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchhh--hh-hhhh------hhcCCEEEEecccCCcc
Confidence                134678999999952111   11113578899999987653221  11 1111      24788999999998643


Q ss_pred             --CCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          134 --MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       134 --~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                        ...+++...+...   ...++++++|+++|.|++++++++.+.+.+
T Consensus       170 ~~~~~~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          170 VGADVEKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HTCCHHHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             hhhHHHHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence              2344443333110   124578999999999999999999887654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.71  E-value=1.8e-17  Score=122.53  Aligned_cols=131  Identities=18%  Similarity=0.115  Sum_probs=99.0

Q ss_pred             HHHhhHhcCCcc--cccCccceeEEEEEE-CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc-cHHHHHHHH
Q 030192           32 TILYKLKLGEIV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDEL  107 (181)
Q Consensus        32 sli~~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~  107 (181)
                      +|+.++..+.|.  .+.||++..+. +.. .+..+.+||+  ++++..++..+++++|++++|||+++++ ++..+..|+
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l  108 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL  108 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence            688888888875  35788885543 322 2237999999  9999999999999999999999999987 677777776


Q ss_pred             HHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192          108 HRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus       108 ~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                      .....    .++|+++|+||+|+.+...   .+++...+..     . ++++++||++|.|++++|..+..
T Consensus       109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----~-~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----L-YPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----h-CcEEEEECCCCcCHHHHHHHhcC
Confidence            65433    4799999999999976432   2233333321     1 46899999999999999987643

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.70  E-value=2.4e-17  Score=130.66  Aligned_cols=121  Identities=17%  Similarity=0.232  Sum_probs=81.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc----cccCccceeEEEEEEC------------------------C------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYK------------------------N------   60 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~------------------------~------   60 (181)
                      ....+|+++|.+|+|||||+|+|++..+.    ...|++..........                        +      
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            35689999999999999999999998753    2233221111000000                        0      


Q ss_pred             -----------EEEEEEEcCCCCC-----------cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCC
Q 030192           61 -----------ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD  118 (181)
Q Consensus        61 -----------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  118 (181)
                                 ..+.+|||||...           +......++..+|++++|+|+++.........++..+ ..   .+
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~  218 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL-RG---HE  218 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT-TT---CG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH-Hh---cC
Confidence                       3589999999764           3455666778999999999998754444444444333 32   46


Q ss_pred             CeEEEEEeCCCCCCCCCHhHH
Q 030192          119 AVLLVFANKQDLPNAMNAAEI  139 (181)
Q Consensus       119 ~piivv~nK~Dl~~~~~~~~~  139 (181)
                      .|+++|+||+|+.+.....++
T Consensus       219 ~pvilVlNK~Dl~~~~el~~~  239 (550)
T 2qpt_A          219 DKIRVVLNKADMVETQQLMRV  239 (550)
T ss_dssp             GGEEEEEECGGGSCHHHHHHH
T ss_pred             CCEEEEEECCCccCHHHHHHH
Confidence            899999999999865444433

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.70  E-value=7.8e-18  Score=128.57  Aligned_cols=80  Identities=30%  Similarity=0.350  Sum_probs=47.2

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEE--E-------------------EC---CEEEEEEEcCC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETV--E-------------------YK---NISFTVWDVGG   70 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~--~-------------------~~---~~~~~i~D~~g   70 (181)
                      ++|+++|.+|+|||||+|++.+.... +..|  |...+....  .                   ..   ...+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987632 2222  222222211  1                   11   36899999999


Q ss_pred             CCC----cccc---hhhccccccEEEEEEECCCc
Q 030192           71 QDK----IRPL---WRHYFQNTQGLIFVVDSNDR   97 (181)
Q Consensus        71 ~~~----~~~~---~~~~~~~~d~~i~v~d~~~~   97 (181)
                      ..+    ...+   ...+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    2222   22456899999999999875

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.69  E-value=1.4e-16  Score=120.01  Aligned_cols=150  Identities=17%  Similarity=0.110  Sum_probs=87.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC------c--ccccCccc--------------------eeEE-------E-----
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE------I--VTTIPTIG--------------------FNVE-------T-----   55 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~------~--~~~~~~~~--------------------~~~~-------~-----   55 (181)
                      ....|+++|+||||||||+|++.+..      .  ....|+..                    ..+.       .     
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t  152 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT  152 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence            36899999999999999999998521      0  01111100                    0000       0     


Q ss_pred             ---------EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030192           56 ---------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN  126 (181)
Q Consensus        56 ---------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~n  126 (181)
                               +...+..+.++||+|-...   .......+|++++|+|++.++..+....   .+      ...|.++|+|
T Consensus       153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN  220 (349)
T 2www_A          153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT  220 (349)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred             HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence                     0124578899999995322   2334578999999999976533221111   11      2457899999


Q ss_pred             CCCCCCCCC----HhHHHhhhCCCcc--cCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          127 KQDLPNAMN----AAEITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       127 K~Dl~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      |+|+.+...    ..++...+.....  ..+..+++.+|+++|.|++++++++.+.+
T Consensus       221 K~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          221 KSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             CCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence            999864211    1123222221110  11234788999999999999999998765

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.68  E-value=1.2e-16  Score=132.13  Aligned_cols=113  Identities=17%  Similarity=0.097  Sum_probs=85.5

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCC------------ccc-------ccCccceeEEEEEEC---------------
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IVT-------TIPTIGFNVETVEYK---------------   59 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~~-------~~~~~~~~~~~~~~~---------------   59 (181)
                      .++..+|+++|++|+|||||+++|+...            +..       ...|+......+.+.               
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            3566899999999999999999997641            110       011333333333332               


Q ss_pred             -CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           60 -NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        60 -~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                       ++.+++|||||+.+|...+..+++.+|++++|+|+++..+.+....|. ....    .++|+++++||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcc
Confidence             688999999999999999999999999999999999887776654443 3333    478999999999986

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.68  E-value=5.4e-17  Score=124.36  Aligned_cols=158  Identities=14%  Similarity=0.178  Sum_probs=73.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-cc--------cCccceeEEEE--E--ECCEEEEEEEcCCCCCcc------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT--------IPTIGFNVETV--E--YKNISFTVWDVGGQDKIR------   75 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~--------~~~~~~~~~~~--~--~~~~~~~i~D~~g~~~~~------   75 (181)
                      .-.++|+++|++|+|||||++.+.+..+. ..        .++.......+  .  .....+.+||++|.....      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            45678999999999999999999987653 11        12222221111  1  123578999999975431      


Q ss_pred             -c------------------chhhccccccEEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030192           76 -P------------------LWRHYFQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN  135 (181)
Q Consensus        76 -~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  135 (181)
                       .                  +...++..+++.+++|..... .++......+...+.    .+.|+|+|+||+|+.....
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e  184 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE  184 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence             1                  112234455544444444322 334344333333333    3689999999999875432


Q ss_pred             HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      ...+.... ...+...+++++++|++++.++++++..+...+
T Consensus       185 v~~~k~~i-~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          185 CQQFKKQI-MKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHH-HHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHH-HHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            22221111 112223345678999999999999888776543

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.64  E-value=1.3e-16  Score=128.63  Aligned_cols=157  Identities=18%  Similarity=0.197  Sum_probs=109.8

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcC--Cc------------cccc-------CccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLG--EI------------VTTI-------PTIGFNVETVEYKNISFTVWDVGGQDKIR   75 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~--~~------------~~~~-------~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (181)
                      -.||+|+|+.++|||||.++|+..  .+            ....       -|+......+.+.++.++++|||||.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            468999999999999999999631  11            0111       13333344567788999999999999999


Q ss_pred             cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCc-----
Q 030192           76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHS-----  147 (181)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~-----  147 (181)
                      ......++-+|++|+|+|+...-..+ ....|.....    .++|.++++||+|......   .+++.+.+....     
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~  156 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK  156 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence            99999999999999999997643322 2344444444    3788999999999765432   223333222110     


Q ss_pred             ---------------------------------------------------ccCcceEEEEccccCCCChHHHHHHHHHH
Q 030192          148 ---------------------------------------------------LRQRHWYIQSTCATSGEGLYEGLDWLSNN  176 (181)
Q Consensus       148 ---------------------------------------------------~~~~~~~~~~~S~~~~~gv~~~~~~i~~~  176 (181)
                                                                         ....-.|++..||+++.|++.+++.+.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~  236 (638)
T 3j25_A          157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK  236 (638)
T ss_dssp             CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred             eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence                                                               00112467788999999999999999876


Q ss_pred             hh
Q 030192          177 IA  178 (181)
Q Consensus       177 ~~  178 (181)
                      +.
T Consensus       237 ~p  238 (638)
T 3j25_A          237 FY  238 (638)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.64  E-value=4.9e-15  Score=111.92  Aligned_cols=81  Identities=21%  Similarity=0.202  Sum_probs=62.4

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECCEEEEEEEcCCCCCcc-------cchhhcccccc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQ   86 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d   86 (181)
                      ..+|+++|.||+|||||+|+|++.... ..  ..|.......+...+.+++++||||--+..       .......+.+|
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad  151 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN  151 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence            358999999999999999999987643 22  346666777788899999999999943211       12334557899


Q ss_pred             EEEEEEECCCc
Q 030192           87 GLIFVVDSNDR   97 (181)
Q Consensus        87 ~~i~v~d~~~~   97 (181)
                      ++++|+|+++|
T Consensus       152 ~il~vvD~~~p  162 (376)
T 4a9a_A          152 LLFIILDVNKP  162 (376)
T ss_dssp             EEEEEEETTSH
T ss_pred             ccccccccCcc
Confidence            99999999876

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.62  E-value=3.9e-15  Score=120.91  Aligned_cols=156  Identities=17%  Similarity=0.150  Sum_probs=96.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-c-ccC-cc------------------------------------------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T-TIP-TI------------------------------------------   49 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~-~~~-~~------------------------------------------   49 (181)
                      ....+|+++|.+++|||||+|++++..+. . ..+ |.                                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            35679999999999999999999987651 1 000 10                                          


Q ss_pred             -----c----eeEEEEEE-CCEEEEEEEcCCCCC-------------cccchhhcc-ccccEEEEEEECCCcccHHHHHH
Q 030192           50 -----G----FNVETVEY-KNISFTVWDVGGQDK-------------IRPLWRHYF-QNTQGLIFVVDSNDRDRVVEARD  105 (181)
Q Consensus        50 -----~----~~~~~~~~-~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~  105 (181)
                           +    .....+.. ....+.++||||-..             .......++ ..+|++++|+|++..........
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                 0    00111112 233588999999543             112233333 47899999999986533323222


Q ss_pred             HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192          106 ELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus       106 ~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                       +...+..   .+.|+++|+||+|+.+.... .++.. ......+....+++.+||++|.|++++++.+..
T Consensus       209 -ll~~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          209 -IAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             -HHHHHCT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             -HHHHHHh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence             2333333   47899999999999765322 22222 111111122346889999999999999998876

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.62  E-value=1e-14  Score=109.59  Aligned_cols=79  Identities=22%  Similarity=0.230  Sum_probs=55.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-ccc--CccceeEEEEEECC-----------------EEEEEEEcCCCCCcc--
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR--   75 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~--~~~~~~~~~~~~~~-----------------~~~~i~D~~g~~~~~--   75 (181)
                      ++|+++|.||+|||||+|++.+..+. ...  +|.+.+...+...+                 ..+.+|||||..++.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999987632 222  24343333333332                 579999999987653  


Q ss_pred             -----cchhhccccccEEEEEEECCC
Q 030192           76 -----PLWRHYFQNTQGLIFVVDSND   96 (181)
Q Consensus        76 -----~~~~~~~~~~d~~i~v~d~~~   96 (181)
                           .....+++++|++++|+|+++
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCC
Confidence                 122345689999999999975

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.62  E-value=6.2e-16  Score=111.63  Aligned_cols=111  Identities=23%  Similarity=0.384  Sum_probs=88.8

Q ss_pred             cCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHH---HHHcCCC-CCCCeEEEEEeC-CCCCCCCCHhHHHhh
Q 030192           68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH---RMLNEDE-LRDAVLLVFANK-QDLPNAMNAAEITDK  142 (181)
Q Consensus        68 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~piivv~nK-~Dl~~~~~~~~~~~~  142 (181)
                      .+|+...+..|.+|++++|++|||+|+++.++++ ....+.   .++.+.. ..+.|++|++|| .|+.......++.+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            3578889999999999999999999999987754 333222   3333321 357999999996 589888889999999


Q ss_pred             hCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192          143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       143 ~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      +++..+. ..|.+..|||++|+|+.+.++|+.+.+.+|
T Consensus       273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            9988774 799999999999999999999999988765

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.61  E-value=5.5e-16  Score=112.23  Aligned_cols=117  Identities=12%  Similarity=0.010  Sum_probs=68.7

Q ss_pred             EEEEEEEcCCCCCcccchh------hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192           61 ISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM  134 (181)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  134 (181)
                      +.+.+|||||..+......      ..+.. +++++++|.....+.......+..........+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            5799999999865433211      23455 8899999986543333322211111110011368899999999987543


Q ss_pred             CHhHHHhhhCC-C----c------------------ccC--cceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          135 NAAEITDKLGL-H----S------------------LRQ--RHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       135 ~~~~~~~~~~~-~----~------------------~~~--~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ..+++...+.. .    .                  ++.  ...+++++||+++.|++++++++.+.+.
T Consensus       188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            22222211100 0    0                  011  1236789999999999999999988764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.61  E-value=6.5e-16  Score=116.05  Aligned_cols=153  Identities=16%  Similarity=0.147  Sum_probs=91.6

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcC------Cc--ccccCccc--------------------eeEE-EE--------
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTIG--------------------FNVE-TV--------   56 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~------~~--~~~~~~~~--------------------~~~~-~~--------   56 (181)
                      ..+...|+++|++|+||||+++.+.+.      +.  ....+...                    ..+. ..        
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g  132 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG  132 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence            456789999999999999999999632      11  01111000                    0000 00        


Q ss_pred             ------------EECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEE
Q 030192           57 ------------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF  124 (181)
Q Consensus        57 ------------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv  124 (181)
                                  ...++.+.++||||..+....   ....+|++++|+|++..+.++....   ..      .+.|.++|
T Consensus       133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv  200 (341)
T 2p67_A          133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIV  200 (341)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEE
T ss_pred             hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEE
Confidence                        024678999999997654432   4578999999999875432211100   00      14678999


Q ss_pred             EeCCCCCCCCCHh----HHHhhhCC-C-cccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          125 ANKQDLPNAMNAA----EITDKLGL-H-SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       125 ~nK~Dl~~~~~~~----~~~~~~~~-~-~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      +||+|+.+.....    ++...+.. . ....+..+++++||++|.|++++++.+.+.+.
T Consensus       201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            9999987542222    22221111 1 01112347889999999999999999987653

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.60  E-value=4.5e-14  Score=115.16  Aligned_cols=114  Identities=18%  Similarity=0.119  Sum_probs=81.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC--------------ccccc---C----ccceeEEEEEE-------CCEEEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE--------------IVTTI---P----TIGFNVETVEY-------KNISFTVW   66 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~--------------~~~~~---~----~~~~~~~~~~~-------~~~~~~i~   66 (181)
                      ++..||+|+|+.++|||||.++|+...              +....   .    |+.....++.+       +++.++++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            566799999999999999999996311              11100   0    22222334444       36899999


Q ss_pred             EcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        67 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      |||||.+|.......++-+|++|+|+|+...-.. .....|.....    .++|.++++||+|....
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~-qT~~v~~~a~~----~~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP-QSETVWRQANK----YGVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCch-hHHHHHHHHHH----cCCCeEEEEccccccCc
Confidence            9999999999999999999999999999764333 23344555544    37999999999997643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.57  E-value=7.5e-15  Score=103.96  Aligned_cols=153  Identities=17%  Similarity=0.167  Sum_probs=87.6

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccce----------------eEEEEEEC---------------
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF----------------NVETVEYK---------------   59 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~----------------~~~~~~~~---------------   59 (181)
                      ....+..+|+++|.+|||||||+++|....+.. ..++.+.                ....+...               
T Consensus        33 ~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  112 (226)
T 2hf9_A           33 LNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALE  112 (226)
T ss_dssp             HHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHT
T ss_pred             HHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHH
Confidence            344567899999999999999999998654321 1122111                11112200               


Q ss_pred             -----CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-
Q 030192           60 -----NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-  133 (181)
Q Consensus        60 -----~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-  133 (181)
                           +..+.++|++|.-...   ..+-...+..+.++|.........  . ....      .+.|.++|+||+|+.+. 
T Consensus       113 ~l~~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~-~~~~------~~~~~iiv~NK~Dl~~~~  180 (226)
T 2hf9_A          113 DLNLDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--K-HPGI------MKTADLIVINKIDLADAV  180 (226)
T ss_dssp             TSCGGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--T-CHHH------HTTCSEEEEECGGGHHHH
T ss_pred             HHhcCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--h-hhhH------hhcCCEEEEeccccCchh
Confidence                 1146666666631111   111123455667777532211100  0 0111      13678999999998643 


Q ss_pred             -CCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          134 -MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       134 -~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                       ...+++...+...   ..+.+++++||++|.|++++|+.+.+.+.+
T Consensus       181 ~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          181 GADIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TCCHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence             2333333322110   123478999999999999999999988765

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.51  E-value=8.4e-14  Score=105.16  Aligned_cols=79  Identities=20%  Similarity=0.239  Sum_probs=54.0

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-ccc--CccceeEEEEEE---------------------CCEEEEEEEcCCCCC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEY---------------------KNISFTVWDVGGQDK   73 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~--~~~~~~~~~~~~---------------------~~~~~~i~D~~g~~~   73 (181)
                      ++|+++|.||+|||||+|++.+.... ...  .|...+......                     .+..+.+|||||..+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            58999999999999999999875421 111  122222222221                     245799999999765


Q ss_pred             cc-------cchhhccccccEEEEEEECCC
Q 030192           74 IR-------PLWRHYFQNTQGLIFVVDSND   96 (181)
Q Consensus        74 ~~-------~~~~~~~~~~d~~i~v~d~~~   96 (181)
                      +.       .....+++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            42       123345689999999999975

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.48  E-value=6.1e-14  Score=105.08  Aligned_cols=153  Identities=13%  Similarity=0.150  Sum_probs=88.8

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhc------CCcc--cccCc--------------cce------eEEE----------
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKL------GEIV--TTIPT--------------IGF------NVET----------   55 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~------~~~~--~~~~~--------------~~~------~~~~----------   55 (181)
                      ..+...++++|++|||||||++.+.+      +...  ...++              ++.      .+..          
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G  131 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG  131 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence            35677899999999999999999973      2210  10110              000      0000          


Q ss_pred             -----------EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEE
Q 030192           56 -----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF  124 (181)
Q Consensus        56 -----------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv  124 (181)
                                 +...+..+.++||+|..+-.   ......+|.+++|+|....+..+......         ...|.+++
T Consensus       132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivv  199 (337)
T 2qm8_A          132 VAAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIA  199 (337)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEE
T ss_pred             hHHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEE
Confidence                       11256789999999964322   22346899999999986443221111111         12355778


Q ss_pred             EeCCCCCCCCC-----HhHHHhhhCCCcc--cCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          125 ANKQDLPNAMN-----AAEITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       125 ~nK~Dl~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      +||+|+.....     .+++...+.....  ..+..+++.+|++++.|++++++.+.+...
T Consensus       200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            89999754211     1222222221110  011236778999999999999999887643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.34  E-value=2.3e-12  Score=95.15  Aligned_cols=95  Identities=20%  Similarity=0.183  Sum_probs=72.1

Q ss_pred             CCCcccchhhccccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCC
Q 030192           71 QDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH  146 (181)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~  146 (181)
                      ++++..+...+++++|++++|+|+++++ ++..+..|+.....    .++|+++|+||+|+.+...   .+++..     
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~-----  136 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWIS-----  136 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHH-----
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHH-----
Confidence            7788888888999999999999999886 78777777664433    5799999999999976421   122221     


Q ss_pred             cccCcceEEEEccccCCCChHHHHHHHH
Q 030192          147 SLRQRHWYIQSTCATSGEGLYEGLDWLS  174 (181)
Q Consensus       147 ~~~~~~~~~~~~S~~~~~gv~~~~~~i~  174 (181)
                      .++..+++++++||++|.|+++++..+.
T Consensus       137 ~~~~~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          137 IYRDAGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             HHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence            2222355799999999999999998764

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.28  E-value=3.2e-12  Score=97.06  Aligned_cols=84  Identities=21%  Similarity=0.245  Sum_probs=51.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-ccc--CccceeEEEEEEC-----------------CEEEEEEEcCCCCCc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYK-----------------NISFTVWDVGGQDKI   74 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~--~~~~~~~~~~~~~-----------------~~~~~i~D~~g~~~~   74 (181)
                      ...++|+++|.+|+|||||+|++.+.... ...  .|...+...+...                 ...+.+||+||..++
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            45689999999999999999999987642 122  2333334444332                 345999999997654


Q ss_pred             cc-------chhhccccccEEEEEEECCCcc
Q 030192           75 RP-------LWRHYFQNTQGLIFVVDSNDRD   98 (181)
Q Consensus        75 ~~-------~~~~~~~~~d~~i~v~d~~~~~   98 (181)
                      ..       .+..+++++|++++|+|+++.+
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            43       4566778999999999997543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.05  E-value=5.3e-11  Score=90.16  Aligned_cols=113  Identities=8%  Similarity=0.122  Sum_probs=67.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC-----Ccc--cccCccceeEEEEEECCEEEEEEEcCCCCCccc--------chhh
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG-----EIV--TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRH   80 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~   80 (181)
                      +..+++++|.+|+|||||+|++.+.     ...  +..|........+... ..+.++||||-.....        ....
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~  239 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKI  239 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence            3568999999999999999999876     211  2233322223333322 2379999999532211        1121


Q ss_pred             cc--ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192           81 YF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM  134 (181)
Q Consensus        81 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  134 (181)
                      ++  +..+.++++++....--+.....  .+.+.   ..+.|+++++||.|..+..
T Consensus       240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~--l~~l~---~~~~~~~~v~~k~d~~~~~  290 (369)
T 3ec1_A          240 ITPKREIHPRVYQLNEGQTLFFGGLAR--LDYIK---GGRRSFVCYMANELTVHRT  290 (369)
T ss_dssp             HSCSSCCCCEEEEECTTEEEEETTTEE--EEEEE---SSSEEEEEEECTTSCEEEE
T ss_pred             HhcccccCceEEEEcCCceEEECCEEE--EEEcc---CCCceEEEEecCCcccccc
Confidence            21  56899999999832100000000  11222   2468999999999987543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.04  E-value=1.8e-09  Score=84.61  Aligned_cols=153  Identities=16%  Similarity=0.142  Sum_probs=87.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHh------cCCcc--cc---cCc-----------cceeEEEE-----------------
Q 030192           16 KEMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IPT-----------IGFNVETV-----------------   56 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~------~~~~~--~~---~~~-----------~~~~~~~~-----------------   56 (181)
                      +...|+++|.+||||||++++|.      +.+..  +.   .+.           .++.+...                 
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999997      43321  10   110           01111110                 


Q ss_pred             EECCEEEEEEEcCCCCCccc-chh---hc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCC
Q 030192           57 EYKNISFTVWDVGGQDKIRP-LWR---HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQD  129 (181)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~D  129 (181)
                      ...++.+.++||||...... ...   ..  ...+|.+++|+|+............+..        ..|+ ++|+||+|
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~--------~~~i~gvVlNK~D  251 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD--------KVDVASVIVTKLD  251 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHH--------HHCCCCEEEECTT
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHh--------hcCceEEEEeCCc
Confidence            11567899999999764321 111   11  1268999999999765432222222211        1454 89999999


Q ss_pred             CCCCCC-HhHHHhhhCCCcc-----cC-cc----eEEEEccccCCCC-hHHHHHHHHHH
Q 030192          130 LPNAMN-AAEITDKLGLHSL-----RQ-RH----WYIQSTCATSGEG-LYEGLDWLSNN  176 (181)
Q Consensus       130 l~~~~~-~~~~~~~~~~~~~-----~~-~~----~~~~~~S~~~~~g-v~~~~~~i~~~  176 (181)
                      ...... ...+....+.+..     +. .+    .+...+|+..|.| ++++++++.+.
T Consensus       252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            874332 2234444443320     00 00    1223579999999 99999988754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.03  E-value=1.1e-09  Score=83.32  Aligned_cols=82  Identities=21%  Similarity=0.320  Sum_probs=57.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc-c-cccC--ccceeEEEEEECC-----------------EEEEEEEcCCCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI-V-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK   73 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-~-~~~~--~~~~~~~~~~~~~-----------------~~~~i~D~~g~~~   73 (181)
                      ....+++++|++|+|||||+|.+.+... . ...|  |...+...+...+                 ..+.+||+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4567999999999999999999998654 1 2233  3334444444433                 4689999999432


Q ss_pred             -------cccchhhccccccEEEEEEECCC
Q 030192           74 -------IRPLWRHYFQNTQGLIFVVDSND   96 (181)
Q Consensus        74 -------~~~~~~~~~~~~d~~i~v~d~~~   96 (181)
                             ....+...++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   23334556688999999999863

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.98  E-value=1.1e-09  Score=83.94  Aligned_cols=119  Identities=15%  Similarity=0.189  Sum_probs=63.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc-----cCccceeEEEE--EECC--EEEEEEEcCCCCCcc----------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV--EYKN--ISFTVWDVGGQDKIR----------   75 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~~~--~~~~--~~~~i~D~~g~~~~~----------   75 (181)
                      ...++++++|++|+|||||++.+.+..+...     .+........+  +...  ..+.++|++|-....          
T Consensus        40 Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~  119 (427)
T 2qag_B           40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV  119 (427)
T ss_dssp             CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence            3445699999999999999999988653211     11111111111  1122  368999999853210          


Q ss_pred             ----cch----hhc---------ccc--ccE-EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030192           76 ----PLW----RHY---------FQN--TQG-LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN  135 (181)
Q Consensus        76 ----~~~----~~~---------~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  135 (181)
                          ..+    ..+         ...  .|+ ++++.|....  +......+...+.    .++|+|+|.||+|...+.+
T Consensus       120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~E  193 (427)
T 2qag_B          120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD----SKVNIIPIIAKADAISKSE  193 (427)
T ss_dssp             HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh----hCCCEEEEEcchhccchHH
Confidence                011    111         111  233 4455665433  2223333333433    4789999999999776543


Q ss_pred             HhHH
Q 030192          136 AAEI  139 (181)
Q Consensus       136 ~~~~  139 (181)
                      ...+
T Consensus       194 ~~~l  197 (427)
T 2qag_B          194 LTKF  197 (427)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.98  E-value=1.9e-10  Score=87.14  Aligned_cols=100  Identities=19%  Similarity=0.145  Sum_probs=66.2

Q ss_pred             CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcc
Q 030192           70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSL  148 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~  148 (181)
                      ..++|++.+..+.+.+|++++|+|++++.  ......+.+.+     .++|+++|+||+|+.+... .+++.+.+. ..+
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~-~~~  126 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMR-YSA  126 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHH-HHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHH-HHH
Confidence            56788899999999999999999998752  11111122221     3689999999999975432 222222110 011


Q ss_pred             cCcce---EEEEccccCCCChHHHHHHHHHHh
Q 030192          149 RQRHW---YIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       149 ~~~~~---~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      +..++   .++.+||++|.|++++++.+.+..
T Consensus       127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            12222   688999999999999999987654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.94  E-value=5.1e-10  Score=84.75  Aligned_cols=115  Identities=8%  Similarity=0.134  Sum_probs=65.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC------cc--cccCccceeEEEEEECCEEEEEEEcCCCCCcccc--------hh
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE------IV--TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WR   79 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~------~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~   79 (181)
                      ...+++++|.+|+|||||+|++.+..      ..  +..|........+... ..+.++||||-......        ..
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            34789999999999999999998753      11  1222221222223222 23899999995322211        11


Q ss_pred             hc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH
Q 030192           80 HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA  136 (181)
Q Consensus        80 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~  136 (181)
                      .+  ....+..+++++.....-.....  ..+.+..   .+.|+++++||.|..+....
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~--~~d~l~~---~~~~~~~v~nk~d~~~~~~~  291 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLA--RFDYVSG---GRRAFTCHFSNRLTIHRTKL  291 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTE--EEEEEES---SSEEEEEEECTTSCEEEEEH
T ss_pred             HhccccccCceEEEEcCCCEEEEcceE--EEEEecC---CCceEEEEecCccccccccH
Confidence            11  25678888998873210000000  0112222   46899999999998764433

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.94  E-value=3.4e-10  Score=85.79  Aligned_cols=102  Identities=15%  Similarity=0.111  Sum_probs=67.2

Q ss_pred             CCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCc
Q 030192           69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHS  147 (181)
Q Consensus        69 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~  147 (181)
                      ..+++|++...++.+.++++++|+|++++.+  .....+...+     .++|+++|+||+|+.+... .+.+.+.+. ..
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~-~~  127 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMR-RM  127 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHH-HH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHH-HH
Confidence            3578899999999899999999999998753  1111122222     3689999999999976432 222222110 01


Q ss_pred             ccCcce---EEEEccccCCCChHHHHHHHHHHhh
Q 030192          148 LRQRHW---YIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       148 ~~~~~~---~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ++..+.   .++.+||++|.|++++++.+.+...
T Consensus       128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            112222   6789999999999999999876543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.91  E-value=2.9e-09  Score=77.34  Aligned_cols=111  Identities=19%  Similarity=0.242  Sum_probs=61.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccc---------c-CccceeEEEE--E--ECCEEEEEEEcCCCCCcc-------
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---------I-PTIGFNVETV--E--YKNISFTVWDVGGQDKIR-------   75 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~-~~~~~~~~~~--~--~~~~~~~i~D~~g~~~~~-------   75 (181)
                      .++++++|++|+|||||++.+.+...+..         . ++.......+  +  .-...+.++|++|-....       
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            37899999999999999999987432211         0 1111111111  1  112368899998732100       


Q ss_pred             cc-----------h----------hhccccccEEEEEEECC-CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           76 PL-----------W----------RHYFQNTQGLIFVVDSN-DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        76 ~~-----------~----------~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      ..           .          ......+++.++++|.. .+-.  .....+...+..   . .++|+|.+|+|....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~--~lD~~~l~~L~~---~-~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLR--PLDLEFMKHLSK---V-VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCC--HHHHHHHHHHHT---T-SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCC--HHHHHHHHHHHh---c-CcEEEEEeccccCCH
Confidence            00           0          00112368888889854 2222  222333333333   3 899999999997754

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.89  E-value=1.2e-08  Score=78.16  Aligned_cols=158  Identities=12%  Similarity=0.146  Sum_probs=84.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccccc------CccceeEEEEEECCE-EEEEEEcCCCCCcccchhhc-----c
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI------PTIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHY-----F   82 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~~~~~-----~   82 (181)
                      .....++++|++|+|||||+|.+.+-..+...      +........++.... .+.++|++|..........+     +
T Consensus        67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L  146 (413)
T 1tq4_A           67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  146 (413)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence            35568999999999999999999884332111      000000111122222 57899999843211111111     2


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC---------CCCCHhHHHhhhCCCc---ccC
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP---------NAMNAAEITDKLGLHS---LRQ  150 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~---------~~~~~~~~~~~~~~~~---~~~  150 (181)
                      ...+..++ ++....   +.....+...+..   .++|+++|.||.|+.         ++...+++.+.+....   ++.
T Consensus       147 ~~~~~~~~-lS~G~~---~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~  219 (413)
T 1tq4_A          147 YEYDFFII-ISATRF---KKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  219 (413)
T ss_dssp             GGCSEEEE-EESSCC---CHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCeEE-eCCCCc---cHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            33455554 666421   1222223333332   368999999999863         2223333322221110   000


Q ss_pred             ---cceEEEEccc--cCCCChHHHHHHHHHHhhh
Q 030192          151 ---RHWYIQSTCA--TSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       151 ---~~~~~~~~S~--~~~~gv~~~~~~i~~~~~~  179 (181)
                         ....++.+|+  ..+.|++++.+.+.+.+.+
T Consensus       220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe  253 (413)
T 1tq4_A          220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  253 (413)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence               1124677899  5566799999999877643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.84  E-value=2.6e-09  Score=78.00  Aligned_cols=102  Identities=14%  Similarity=0.092  Sum_probs=67.2

Q ss_pred             EEEcCCCC-CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030192           65 VWDVGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL  143 (181)
Q Consensus        65 i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~  143 (181)
                      +-..||+. ...+.....+.++|+++.|+|+.++.+...  ..+..++     .++|.++|+||+|+.+....+.+.+.+
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~   75 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF   75 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence            33468875 455566677889999999999988766532  1122222     368999999999998743333333333


Q ss_pred             CCCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          144 GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       144 ~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      .     ..+.+++.+||+++.|++++++.+.+.+.
T Consensus        76 ~-----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           76 E-----NQGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             H-----TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             H-----hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            1     22346888999999999999998877654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.73  E-value=9.1e-09  Score=75.15  Aligned_cols=57  Identities=23%  Similarity=0.358  Sum_probs=36.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccCcccee--EEEEEECCEEEEEEEcCCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQD   72 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~   72 (181)
                      .+.++++++|.||+|||||+|++.+.......+..+.+  ...+.. +..+.++||||-.
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence            46689999999999999999999987644332222221  112222 3368999999953

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.71  E-value=4.2e-09  Score=76.15  Aligned_cols=55  Identities=25%  Similarity=0.293  Sum_probs=35.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE--EEEEECCEEEEEEEcCCCCC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQDK   73 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~   73 (181)
                      ++++++|.+|+|||||+|++.+.......++.+.+.  ..+. -+..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~-~~~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS-LENGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE-CTTSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE-eCCCEEEEECCCccc
Confidence            699999999999999999999877644433333221  1122 234689999999643

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.55  E-value=3.5e-07  Score=70.51  Aligned_cols=110  Identities=20%  Similarity=0.221  Sum_probs=63.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc------CCcc--c---ccC-----------ccceeEEEE-----------------
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL------GEIV--T---TIP-----------TIGFNVETV-----------------   56 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~------~~~~--~---~~~-----------~~~~~~~~~-----------------   56 (181)
                      +...|+++|++|+||||++..+..      .+..  .   ..+           ..+......                 
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999853      2110  0   001           111111110                 


Q ss_pred             EECCEEEEEEEcCCCCCcccchh------hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192           57 EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL  130 (181)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  130 (181)
                      ...++.+.++||+|.........      .....+|.+++|+|++...........+.+   .    -.+..+|+||.|.
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~---~----~~i~gVIlTKlD~  251 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKE---A----TPIGSIIVTKLDG  251 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH---S----CTTEEEEEECCSS
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHh---h----CCCeEEEEECCCC
Confidence            01347899999999654322111      111358999999999764333232222222   1    2346799999998


Q ss_pred             CC
Q 030192          131 PN  132 (181)
Q Consensus       131 ~~  132 (181)
                      ..
T Consensus       252 ~~  253 (443)
T 3dm5_A          252 SA  253 (443)
T ss_dssp             CS
T ss_pred             cc
Confidence            64

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.44  E-value=2.5e-07  Score=73.74  Aligned_cols=60  Identities=20%  Similarity=0.186  Sum_probs=41.6

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcc-cc-----cCccceeEEEEE---ECCEEEEEEEcCCCCC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TT-----IPTIGFNVETVE---YKNISFTVWDVGGQDK   73 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~-----~~~~~~~~~~~~---~~~~~~~i~D~~g~~~   73 (181)
                      ......|+|+|.||+|||||+|++.+.... ..     ..|.+.......   ..+..+.++||||-..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            456789999999999999999999987632 21     123333222221   2467899999999543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.41  E-value=2.5e-07  Score=74.40  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..++++|++|||||||++.+.+-.
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            359999999999999999998764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.33  E-value=4.6e-07  Score=69.89  Aligned_cols=108  Identities=21%  Similarity=0.217  Sum_probs=62.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcC------Ccc--ccc--------------------------Cccc---eeEEEE-EE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLG------EIV--TTI--------------------------PTIG---FNVETV-EY   58 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~------~~~--~~~--------------------------~~~~---~~~~~~-~~   58 (181)
                      ...|+++|++|+||||+++.+...      +..  ...                          .+..   .....+ ..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            457999999999999999999652      110  000                          0000   000000 01


Q ss_pred             CCEEEEEEEcCCCCCcccchh------hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCC-e-EEEEEeCCCC
Q 030192           59 KNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-V-LLVFANKQDL  130 (181)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-iivv~nK~Dl  130 (181)
                      .++.+.++||||.........      .....+|.+++|+|+.....   ...... .+.    ... | ..+|+||+|.
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~-~~~----~~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAK-AFK----EAVGEIGSIIVTKLDG  250 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHH-HHH----TTSCSCEEEEEECSSS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHH-HHh----hcccCCeEEEEeCCCC
Confidence            467899999999765321111      11236999999999865432   222222 222    124 4 7899999998


Q ss_pred             CC
Q 030192          131 PN  132 (181)
Q Consensus       131 ~~  132 (181)
                      ..
T Consensus       251 ~~  252 (432)
T 2v3c_C          251 SA  252 (432)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.26  E-value=3.8e-07  Score=67.22  Aligned_cols=86  Identities=13%  Similarity=0.151  Sum_probs=58.0

Q ss_pred             hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcccCcceE
Q 030192           79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWY  154 (181)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~  154 (181)
                      .....++|.+++|+|+.+|..-......+......   .++|.++|+||+|+.+...    .+++...+     +..+.+
T Consensus        81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~~g~~  152 (307)
T 1t9h_A           81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RNIGYD  152 (307)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HHHTCC
T ss_pred             HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHH-----HhCCCe
Confidence            34568999999999998765543444444433333   5789999999999987532    23333332     223446


Q ss_pred             EEEccccCCCChHHHHHH
Q 030192          155 IQSTCATSGEGLYEGLDW  172 (181)
Q Consensus       155 ~~~~S~~~~~gv~~~~~~  172 (181)
                      ++.+|+.++.|+++++..
T Consensus       153 v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          153 VYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             EEECCHHHHTTCTTTGGG
T ss_pred             EEEEecCCCCCHHHHHhh
Confidence            888999999998876653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.18  E-value=2.1e-07  Score=67.25  Aligned_cols=92  Identities=9%  Similarity=0.009  Sum_probs=58.3

Q ss_pred             cCCCC-CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC
Q 030192           68 VGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH  146 (181)
Q Consensus        68 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~  146 (181)
                      .||+. ...+.....+.++|+++.|+|+.++.+.....  +. +     . ++|.++|+||+|+.+....+.+...+.  
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~--   72 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK--   72 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence            46764 33345566778999999999998775543210  11 1     1 789999999999987533333333221  


Q ss_pred             cccCcceEEEEccccCCCChHHHHHHHH
Q 030192          147 SLRQRHWYIQSTCATSGEGLYEGLDWLS  174 (181)
Q Consensus       147 ~~~~~~~~~~~~S~~~~~gv~~~~~~i~  174 (181)
                         ..+.++ .+|++++.|+++++..+.
T Consensus        73 ---~~g~~v-~iSa~~~~gi~~L~~~l~   96 (262)
T 3cnl_A           73 ---KQGKRV-ITTHKGEPRKVLLKKLSF   96 (262)
T ss_dssp             ---HTTCCE-EECCTTSCHHHHHHHHCC
T ss_pred             ---HcCCeE-EEECCCCcCHHHHHHHHH
Confidence               223356 899999999999887654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.11  E-value=1.1e-05  Score=62.18  Aligned_cols=109  Identities=19%  Similarity=0.252  Sum_probs=63.2

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc------CCcc--c---cc-----------CccceeEEEE-----------------E
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL------GEIV--T---TI-----------PTIGFNVETV-----------------E   57 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~------~~~~--~---~~-----------~~~~~~~~~~-----------------~   57 (181)
                      ...|+++|++|+||||++..+..      .+..  .   ..           ...+......                 .
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~  176 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV  176 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence            56789999999999999999852      1110  0   00           0111111110                 0


Q ss_pred             ECCEEEEEEEcCCCCC--ccc----chhhc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030192           58 YKNISFTVWDVGGQDK--IRP----LWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD  129 (181)
Q Consensus        58 ~~~~~~~i~D~~g~~~--~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D  129 (181)
                      ..++.+.++||||...  ...    .....  .-+.+.+++|+|+............+.+.+       .+..+|+||.|
T Consensus       177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~-------~~~gVIlTKlD  249 (433)
T 3kl4_A          177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQAS-------PIGSVIITKMD  249 (433)
T ss_dssp             TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHC-------SSEEEEEECGG
T ss_pred             hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhccc-------CCcEEEEeccc
Confidence            1357899999999654  111    11111  124699999999976443333333333321       34688999999


Q ss_pred             CCC
Q 030192          130 LPN  132 (181)
Q Consensus       130 l~~  132 (181)
                      ...
T Consensus       250 ~~a  252 (433)
T 3kl4_A          250 GTA  252 (433)
T ss_dssp             GCS
T ss_pred             ccc
Confidence            763

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.06  E-value=3.6e-06  Score=61.82  Aligned_cols=108  Identities=20%  Similarity=0.214  Sum_probs=62.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc------CCcc--c---ccC-----------ccceeEEE-----------------EE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL------GEIV--T---TIP-----------TIGFNVET-----------------VE   57 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~------~~~~--~---~~~-----------~~~~~~~~-----------------~~   57 (181)
                      ...++++|++|+||||++..+..      .+..  .   ..+           ..++....                 ..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            44788999999999999999852      2210  0   001           00111100                 01


Q ss_pred             ECCEEEEEEEcCCCCC--ccc-chh-----hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCC
Q 030192           58 YKNISFTVWDVGGQDK--IRP-LWR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQ  128 (181)
Q Consensus        58 ~~~~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~  128 (181)
                      ..++.+.++||||...  ... ...     .....+|.+++|+|+.....   .......+..     ..| ..+|+||.
T Consensus       178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~  249 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKM  249 (297)
T ss_dssp             HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECG
T ss_pred             hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCC
Confidence            1567899999999876  322 111     12346999999999864322   2222222211     234 67889999


Q ss_pred             CCCC
Q 030192          129 DLPN  132 (181)
Q Consensus       129 Dl~~  132 (181)
                      |...
T Consensus       250 D~~~  253 (297)
T 1j8m_F          250 DGTA  253 (297)
T ss_dssp             GGCT
T ss_pred             CCCc
Confidence            9753

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.96  E-value=4.1e-07  Score=71.05  Aligned_cols=94  Identities=27%  Similarity=0.280  Sum_probs=53.8

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEE----EECCEEEEEEEcCCCCC--cccch--------
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV----EYKNISFTVWDVGGQDK--IRPLW--------   78 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~D~~g~~~--~~~~~--------   78 (181)
                      .......|+++|.+||||||+.++|...-.....++..+....+    ........+||..|.+.  .+..+        
T Consensus        35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~  114 (469)
T 1bif_A           35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV  114 (469)
T ss_dssp             ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999997543211122221110000    01113346788888632  23222        


Q ss_pred             hhccccccEEEEEEECCCcccHHHHHHHH
Q 030192           79 RHYFQNTQGLIFVVDSNDRDRVVEARDEL  107 (181)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~  107 (181)
                      ..++...++.++|+|.++. +......|+
T Consensus       115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~  142 (469)
T 1bif_A          115 RKFLSEEGGHVAVFDATNT-TRERRAMIF  142 (469)
T ss_dssp             HHHHHTTCCSEEEEESCCC-SHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEeCCCC-CHHHHHHHH
Confidence            4555667899999999877 344444443

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.91  E-value=1.8e-05  Score=61.21  Aligned_cols=37  Identities=11%  Similarity=0.144  Sum_probs=28.1

Q ss_pred             hHHHHHHh--hhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192            4 TFTKLFSR--LFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus         4 ~~~~~~~~--~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ++..++.+  ....+..-|.|+|++++|||+|+|++++.
T Consensus        52 al~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           52 ALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             HHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            44455554  23456678999999999999999999863

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.91  E-value=3.1e-05  Score=58.16  Aligned_cols=84  Identities=17%  Similarity=0.110  Sum_probs=53.5

Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccCcceEEEE
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQS  157 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      ...++|.+++|.... |..-......+......   .++|.++|+||+|+.+...   .+++...     ++..+++++.
T Consensus       127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~-----y~~~G~~v~~  197 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDI-----YRNIGYRVLM  197 (358)
T ss_dssp             EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHH-----HHTTTCCEEE
T ss_pred             HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHH-----HHhCCCcEEE
Confidence            457899999886654 54433333333322222   3678899999999986532   1222222     2334556889


Q ss_pred             ccccCCCChHHHHHHH
Q 030192          158 TCATSGEGLYEGLDWL  173 (181)
Q Consensus       158 ~S~~~~~gv~~~~~~i  173 (181)
                      +|++++.|++++...+
T Consensus       198 ~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          198 VSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             CBTTTTBTHHHHHHHH
T ss_pred             EecCCCcCHHHHHHhc
Confidence            9999999999887643

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.79  E-value=0.00014  Score=56.09  Aligned_cols=122  Identities=23%  Similarity=0.227  Sum_probs=67.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHh-------cCCcc-----cccC-----------ccceeEEE-----------------
Q 030192           16 KEMRILMVGLDAAGKTTILYKLK-------LGEIV-----TTIP-----------TIGFNVET-----------------   55 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~-------~~~~~-----~~~~-----------~~~~~~~~-----------------   55 (181)
                      ....|+++|.+|+||||++..|.       +.+..     ...+           ..++....                 
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~  178 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE  178 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence            34578899999999999999885       32210     0000           00111100                 


Q ss_pred             EEECCEEEEEEEcCCCCCcccchh------hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCC
Q 030192           56 VEYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQ  128 (181)
Q Consensus        56 ~~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~  128 (181)
                      ....++.+.++||||.........      .....++.+++|+|+............+..        ..+ .-+|+||.
T Consensus       179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~--------~l~i~gvVlnK~  250 (433)
T 2xxa_A          179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNE--------ALPLTGVVLTKV  250 (433)
T ss_dssp             HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHH--------HSCCCCEEEECT
T ss_pred             HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhc--------cCCCeEEEEecC
Confidence            011467899999999755432111      113468999999999754333222222211        123 34789999


Q ss_pred             CCCCCC-CHhHHHhhhCC
Q 030192          129 DLPNAM-NAAEITDKLGL  145 (181)
Q Consensus       129 Dl~~~~-~~~~~~~~~~~  145 (181)
                      |..... ....+....+.
T Consensus       251 D~~~~~g~~l~i~~~~~~  268 (433)
T 2xxa_A          251 DGDARGGAALSIRHITGK  268 (433)
T ss_dssp             TSSSCCTHHHHHHHHHCC
T ss_pred             CCCccHHHHHHHHHHHCC
Confidence            975432 22344444443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.76  E-value=3.3e-05  Score=57.46  Aligned_cols=111  Identities=20%  Similarity=0.223  Sum_probs=61.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc---------c-c------------CccceeEEEEE---------------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT---------T-I------------PTIGFNVETVE---------------   57 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---------~-~------------~~~~~~~~~~~---------------   57 (181)
                      .+.--++++|++||||||+++.+.+...+.         . .            ...++.+....               
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            356789999999999999999996421100         0 0            01111111000               


Q ss_pred             --ECCEEEEEEEcCCCCCcccchhhc------cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030192           58 --YKNISFTVWDVGGQDKIRPLWRHY------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD  129 (181)
Q Consensus        58 --~~~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D  129 (181)
                        ..+..+.++|++|..........-      .-..|-.++++|.......   ......+...    -...++++||.|
T Consensus       207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~---~~~~~~~~~~----~~it~iilTKlD  279 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAI---VEQARQFNEA----VKIDGIILTKLD  279 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHH---HHHHHHHHHH----SCCCEEEEECGG
T ss_pred             HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHH---HHHHHHHHHh----cCCCEEEEeCcC
Confidence              023456789999965433221111      1147889999998654333   3323232221    122478899999


Q ss_pred             CCC
Q 030192          130 LPN  132 (181)
Q Consensus       130 l~~  132 (181)
                      ...
T Consensus       280 ~~a  282 (328)
T 3e70_C          280 ADA  282 (328)
T ss_dssp             GCS
T ss_pred             Ccc
Confidence            743

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.70  E-value=0.00019  Score=48.48  Aligned_cols=107  Identities=12%  Similarity=0.087  Sum_probs=48.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhc----cccccEEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY----FQNTQGLIFVVD   93 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~d~~i~v~d   93 (181)
                      .-++++|++|||||||++++...-.     ..+.....+......+. +|.+|.+.++-....+    ........++.+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~-----~~g~~v~~i~~~~~~~~-id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~   80 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALC-----ARGIRPGLIKHTHHDMD-VDKPGKDSYELRKAGAAQTIVASQQRWALMTE   80 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcc-----ccCCceeEEeeCCCccc-cCCCCCceEEEEeCCcceeecccchhheeeee
Confidence            4689999999999999999986421     11222223333332222 3555654332111111    011222333333


Q ss_pred             C--CCcccHHHHHHHHHHH------HcCCCCCCCeEEEEEeCCCC
Q 030192           94 S--NDRDRVVEARDELHRM------LNEDELRDAVLLVFANKQDL  130 (181)
Q Consensus        94 ~--~~~~s~~~~~~~~~~~------~~~~~~~~~piivv~nK~Dl  130 (181)
                      .  .....+..+...+...      +........|.+++.+|.+.
T Consensus        81 ~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~~~pki~v~~~~~~  125 (174)
T 1np6_A           81 TPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAG  125 (174)
T ss_dssp             CSSSCCCCHHHHHHHSCGGGCSEEEEESCSSCCSEEEEEECTTSS
T ss_pred             ccCCchhhHHHHHHhcCCCcchHHHHHHHhhcCCCEEEEEecccC
Confidence            2  1234555554332211      11123346899999999874

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.62  E-value=3.2e-05  Score=52.46  Aligned_cols=23  Identities=35%  Similarity=0.549  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+++++|++|||||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.53  E-value=5.7e-05  Score=51.17  Aligned_cols=24  Identities=17%  Similarity=0.325  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .-.++++|++|||||||++.+.+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            347899999999999999999763

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.52  E-value=8.1e-05  Score=51.59  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=26.3

Q ss_pred             HHHHHhhh--cccccEEEEEcCCCCChHHHHhhHhcC
Q 030192            6 TKLFSRLF--AKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus         6 ~~~~~~~~--~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..+..+..  ......|+|+|++|||||||++.+.+.
T Consensus         9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A            9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             HHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34444433  356789999999999999999988653

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.51  E-value=6.4e-05  Score=51.77  Aligned_cols=30  Identities=17%  Similarity=0.365  Sum_probs=23.7

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .++..+..-|+++|++|+|||||++.|...
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            455567778999999999999999999754

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.51  E-value=4.9e-05  Score=52.38  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      -.++++|++|||||||++.+.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999976

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.49  E-value=0.00011  Score=56.59  Aligned_cols=67  Identities=13%  Similarity=0.085  Sum_probs=37.9

Q ss_pred             CCEEEEEEEcCCCCCcccc-hh-----hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           59 KNISFTVWDVGGQDKIRPL-WR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~-~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      ..+.+.++||||....... ..     ...-.+|.+++|+|+.....   .......+...    -...-+|+||.|...
T Consensus       179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~~----l~i~GVIlTKlD~~~  251 (425)
T 2ffh_A          179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEK----VGVTGLVLTKLDGDA  251 (425)
T ss_dssp             TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHH----TCCCEEEEESGGGCS
T ss_pred             CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHhc----CCceEEEEeCcCCcc
Confidence            4577999999997544311 11     11125899999999864322   22222222111    112467889999753

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.46  E-value=8.8e-05  Score=50.11  Aligned_cols=33  Identities=15%  Similarity=0.142  Sum_probs=25.5

Q ss_pred             HHhhhcccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192            9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus         9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..++.....-.+++.|++|+|||+|++.+.+.-
T Consensus        30 ~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           30 VHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             HHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             HHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            344444556789999999999999999987543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.45  E-value=8.1e-05  Score=52.95  Aligned_cols=24  Identities=25%  Similarity=0.483  Sum_probs=21.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHh
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      .+...|+++|++||||||+++.+.
T Consensus        25 ~~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           25 SKLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999998

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.41  E-value=7.6e-05  Score=51.36  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .--++++|++|||||||++.+.+.
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            456899999999999999999764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.37  E-value=0.00011  Score=49.94  Aligned_cols=25  Identities=28%  Similarity=0.234  Sum_probs=21.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      +.-.++++|++||||||+++.+.+.
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3457899999999999999999765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.36  E-value=9.6e-05  Score=51.19  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=21.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ...--++++|++|||||||++.+.+-
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            45557899999999999999999764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.36  E-value=8.9e-05  Score=49.81  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=19.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..--++++|++|||||||++.+..
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHcc
Confidence            445689999999999999997543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.34  E-value=0.00011  Score=51.36  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=21.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ...-.++++|++|||||||++.+.+.
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            45567899999999999999999764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.32  E-value=0.00011  Score=51.48  Aligned_cols=26  Identities=15%  Similarity=0.244  Sum_probs=21.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..--++++|++|||||||++.+.+..
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            44578999999999999999997643

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.31  E-value=0.00029  Score=47.44  Aligned_cols=36  Identities=19%  Similarity=0.270  Sum_probs=27.3

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      +..+...+.....-.+++.|++|+|||++++.+...
T Consensus        31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence            344444455455678999999999999999998654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.28  E-value=0.00018  Score=49.53  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=22.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ....|+++|++||||||+++.+.+..
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45679999999999999999997654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.27  E-value=0.00017  Score=48.11  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=18.7

Q ss_pred             cEEEEEcCCCCChHHHHhhH
Q 030192           18 MRILMVGLDAAGKTTILYKL   37 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l   37 (181)
                      ..|+++|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.27  E-value=0.00016  Score=50.05  Aligned_cols=25  Identities=36%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++...|+++|++|||||||++.+.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4556899999999999999999865

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.26  E-value=0.00019  Score=49.76  Aligned_cols=27  Identities=19%  Similarity=0.270  Sum_probs=22.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ....-|+++|++||||||+++.|....
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            345578999999999999999997653

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.25  E-value=0.0018  Score=44.38  Aligned_cols=69  Identities=13%  Similarity=0.082  Sum_probs=45.4

Q ss_pred             CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCC
Q 030192           59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLP  131 (181)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~  131 (181)
                      ..+.+.++|+|+..  .......+..+|.++++...+...  ......+..+.... ...+.++.+|+|+.|..
T Consensus        74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred             CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            35789999999876  333455667799999999987443  44444333332211 12456789999999954

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.25  E-value=0.00015  Score=51.29  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=22.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            44578999999999999999998754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.24  E-value=0.00021  Score=49.13  Aligned_cols=28  Identities=36%  Similarity=0.418  Sum_probs=23.2

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ......+.|++.|.+||||||+.+.|..
T Consensus        15 ~~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456678999999999999999999854

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.23  E-value=0.00017  Score=54.14  Aligned_cols=26  Identities=19%  Similarity=0.178  Sum_probs=22.7

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEI   42 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~   42 (181)
                      .-.++++|++|+|||||+|.+.+...
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCEEEEECCCCccHHHHHHHHhcccc
Confidence            34789999999999999999997654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.23  E-value=0.00017  Score=49.17  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHhhHhcC
Q 030192           20 ILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~   40 (181)
                      |+|+||+||||+||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.23  E-value=0.00023  Score=48.30  Aligned_cols=28  Identities=25%  Similarity=0.336  Sum_probs=23.4

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ...+...|+++|.+||||||+.+.|...
T Consensus         6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            6 EQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3445678999999999999999998654

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.20  E-value=0.00019  Score=49.52  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...-|+++|++||||||+++.|..
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999965

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.18  E-value=0.0002  Score=47.89  Aligned_cols=22  Identities=41%  Similarity=0.457  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..|+++|++||||||+.+.+.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999865

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.18  E-value=0.0002  Score=50.39  Aligned_cols=26  Identities=35%  Similarity=0.549  Sum_probs=22.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34468999999999999999998754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.18  E-value=0.0002  Score=48.66  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .++++|++||||||+++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.18  E-value=0.00023  Score=48.26  Aligned_cols=30  Identities=30%  Similarity=0.388  Sum_probs=23.7

Q ss_pred             HhhhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192           10 SRLFAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++....+...|+++|.+||||||+.+.+..
T Consensus         6 ~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A            6 TYKCIEKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             --CCCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cccccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            344445678899999999999999999864

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.17  E-value=0.00025  Score=48.73  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .....|+++|++||||||+++.+.+
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999854

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.17  E-value=0.00035  Score=50.27  Aligned_cols=31  Identities=26%  Similarity=0.228  Sum_probs=24.3

Q ss_pred             HhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      +...-...-.++++|++||||||+++.+.+.
T Consensus        18 ~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           18 LELCHRKMGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             HHGGGCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             HHHhhCCCCEEEEECCCCccHHHHHHHHHHh
Confidence            3333445567999999999999999999763

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.15  E-value=0.00025  Score=49.22  Aligned_cols=22  Identities=36%  Similarity=0.492  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999843

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.15  E-value=0.00027  Score=47.37  Aligned_cols=24  Identities=13%  Similarity=0.360  Sum_probs=20.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ....|+++|++||||||+.+.+.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345799999999999999998854

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.15  E-value=0.00037  Score=46.76  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=27.1

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      +..+...+.....-.+++.|++|+|||++++.+...
T Consensus        31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           31 IRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             HHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence            344444444455678999999999999999988654

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.15  E-value=0.00023  Score=47.79  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..|++.|++||||||+.+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3589999999999999999976

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.15  E-value=0.00026  Score=47.10  Aligned_cols=21  Identities=33%  Similarity=0.357  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .|++.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999854

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.14  E-value=0.00027  Score=49.11  Aligned_cols=22  Identities=32%  Similarity=0.450  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999853

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.13  E-value=0.00025  Score=50.42  Aligned_cols=24  Identities=21%  Similarity=0.152  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      -.++++|+.|||||||++.+.+-.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.12  E-value=0.00034  Score=51.80  Aligned_cols=24  Identities=38%  Similarity=0.272  Sum_probs=21.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHh
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      .+.+-|+++|++|||||||++.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999998884

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.12  E-value=0.00033  Score=48.11  Aligned_cols=28  Identities=32%  Similarity=0.501  Sum_probs=23.1

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ........|.++|++||||||+.+.+.+
T Consensus        20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           20 LLDQKGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             HHTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3345667899999999999999998864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.12  E-value=0.00034  Score=51.46  Aligned_cols=26  Identities=19%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhc
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      -...-.++|+|++|+|||||++.+.+
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhh
Confidence            35666899999999999999999864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.12  E-value=0.00025  Score=51.47  Aligned_cols=26  Identities=15%  Similarity=0.184  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            44568999999999999999998754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.11  E-value=0.00037  Score=46.26  Aligned_cols=27  Identities=30%  Similarity=0.332  Sum_probs=23.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ...-.++++|+.|+|||||++.+.+..
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            455578999999999999999998754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.11  E-value=0.00026  Score=50.17  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=22.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44578999999999999999998764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.11  E-value=8.8e-05  Score=54.64  Aligned_cols=26  Identities=15%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|++|+|||||+|.+.+..
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcccc
Confidence            34589999999999999999998754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.10  E-value=0.00027  Score=49.29  Aligned_cols=26  Identities=27%  Similarity=0.239  Sum_probs=22.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34467999999999999999998754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.09  E-value=0.00027  Score=50.91  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44468999999999999999998754

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.09  E-value=0.00032  Score=49.87  Aligned_cols=28  Identities=25%  Similarity=0.253  Sum_probs=22.2

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +.-.....|+++|+.|||||||++.+.+
T Consensus        20 l~i~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           20 FQSMRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             ---CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3345667899999999999999999865

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.09  E-value=0.00031  Score=48.26  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...|+++|++||||||+.+.|..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999854

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.09  E-value=0.00027  Score=50.99  Aligned_cols=26  Identities=27%  Similarity=0.285  Sum_probs=22.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            44578999999999999999998754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.08  E-value=0.00026  Score=48.39  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHhhHhcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999999764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.08  E-value=0.00034  Score=47.38  Aligned_cols=23  Identities=17%  Similarity=0.143  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...|++.|++||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999853

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.08  E-value=0.00033  Score=48.92  Aligned_cols=23  Identities=26%  Similarity=0.222  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...|+++|++||||||+.+.+.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.08  E-value=0.00028  Score=50.61  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44568999999999999999998754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.08  E-value=0.0003  Score=47.56  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999863

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.08  E-value=0.00036  Score=48.65  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=21.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++.+.|+++|.+||||||+.+.|..
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998853

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.08  E-value=0.00032  Score=48.22  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..|+++|++||||||+.+.+.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999999875

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.07  E-value=0.00033  Score=49.99  Aligned_cols=26  Identities=23%  Similarity=0.181  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44578999999999999999998754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.07  E-value=0.00027  Score=51.87  Aligned_cols=26  Identities=27%  Similarity=0.376  Sum_probs=22.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEI   42 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~   42 (181)
                      .-.++++|++|||||||+|.+.+...
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CCeEEEECCCCCcHHHHHHHhccccc
Confidence            34689999999999999999987553

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.06  E-value=0.00037  Score=47.83  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=20.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ....|+++|++||||||+.+.+..
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            445899999999999999999853

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.06  E-value=0.00033  Score=49.82  Aligned_cols=26  Identities=27%  Similarity=0.229  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44578999999999999999998753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.06  E-value=0.00023  Score=50.11  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=17.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHh-cC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLK-LG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~-~~   40 (181)
                      +..--++++|++||||||+++.+. +.
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            345578999999999999999998 54

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.06  E-value=0.00031  Score=49.53  Aligned_cols=26  Identities=23%  Similarity=0.281  Sum_probs=22.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44478999999999999999998754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.05  E-value=0.00038  Score=47.27  Aligned_cols=24  Identities=33%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ....|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999854

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.04  E-value=0.00048  Score=51.80  Aligned_cols=31  Identities=23%  Similarity=0.193  Sum_probs=23.7

Q ss_pred             HhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .++.....=.++++|++||||||+++.+.+.
T Consensus       116 ~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          116 KRVSDVPRGLVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             HHHHHCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3333334448999999999999999999753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.04  E-value=0.00033  Score=50.48  Aligned_cols=26  Identities=31%  Similarity=0.445  Sum_probs=22.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            44468999999999999999998754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.04  E-value=0.00028  Score=49.05  Aligned_cols=24  Identities=17%  Similarity=0.232  Sum_probs=21.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .-.++++|+.|||||||++.+.+-
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            446899999999999999999876

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.03  E-value=0.00034  Score=49.67  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=22.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44568999999999999999998754

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.03  E-value=0.00037  Score=51.45  Aligned_cols=26  Identities=27%  Similarity=0.181  Sum_probs=22.8

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhc
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .....-|+|+|++|||||||++.+.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHh
Confidence            45677899999999999999999865

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.03  E-value=0.00065  Score=48.26  Aligned_cols=25  Identities=32%  Similarity=0.420  Sum_probs=22.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+.+.|++.|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999964

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.03  E-value=0.00034  Score=50.20  Aligned_cols=26  Identities=27%  Similarity=0.216  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            44578999999999999999998754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.02  E-value=0.00035  Score=49.90  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44468999999999999999998754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.02  E-value=0.0004  Score=47.53  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.01  E-value=0.00037  Score=49.80  Aligned_cols=25  Identities=28%  Similarity=0.217  Sum_probs=21.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..-.++++|+.|||||||++.+.+-
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4446899999999999999999885

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.01  E-value=0.00064  Score=46.78  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=21.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .....|+++|++||||||+++.+.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.01  E-value=0.0004  Score=49.95  Aligned_cols=26  Identities=27%  Similarity=0.167  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            44578999999999999999998753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.01  E-value=0.00036  Score=51.29  Aligned_cols=24  Identities=33%  Similarity=0.616  Sum_probs=21.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ...++++|++|+|||||+|.+. ..
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            4578999999999999999998 54

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.01  E-value=0.00042  Score=48.05  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +.|+++|+|||||+|....+..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.01  E-value=0.00041  Score=47.79  Aligned_cols=22  Identities=27%  Similarity=0.170  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +.|+++|++||||||+.+.+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999965

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.99  E-value=0.00077  Score=49.23  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=21.8

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHh
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      ..+...|+|+|++|||||||++.+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3567889999999999999998874

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.99  E-value=0.0005  Score=47.12  Aligned_cols=25  Identities=32%  Similarity=0.421  Sum_probs=21.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      +...|++.|.+||||||+++.|...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.99  E-value=0.00039  Score=50.17  Aligned_cols=25  Identities=20%  Similarity=0.189  Sum_probs=22.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..-.++++|+.|||||||++.+.+-
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4457899999999999999999885

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.99  E-value=0.00044  Score=48.01  Aligned_cols=22  Identities=36%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999854

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.99  E-value=0.00039  Score=50.32  Aligned_cols=26  Identities=23%  Similarity=0.188  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44578999999999999999998754

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.98  E-value=0.00055  Score=50.42  Aligned_cols=25  Identities=28%  Similarity=0.254  Sum_probs=22.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+...|+|+|++|||||||++.+.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5567899999999999999998865

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.98  E-value=0.00038  Score=48.62  Aligned_cols=24  Identities=21%  Similarity=0.212  Sum_probs=20.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..--++++|++|||||||++.+.+
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            344689999999999999999976

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.98  E-value=0.0005  Score=47.43  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=21.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ....|+++|++||||||+.+.+.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4567999999999999999999764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.98  E-value=0.00041  Score=46.53  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..|.+.|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999965

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.97  E-value=0.00044  Score=50.22  Aligned_cols=26  Identities=42%  Similarity=0.537  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44578999999999999999998754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.97  E-value=0.00045  Score=46.82  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .|++.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999854

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.97  E-value=0.0004  Score=49.71  Aligned_cols=26  Identities=27%  Similarity=0.249  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468999999999999999998754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.96  E-value=0.00042  Score=50.00  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44578999999999999999998754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.96  E-value=0.00051  Score=47.32  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...|++.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999964

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.95  E-value=0.00021  Score=48.05  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .++|+|++|||||||++.+.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999754

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.95  E-value=0.00049  Score=46.72  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998853

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.95  E-value=0.00056  Score=46.53  Aligned_cols=24  Identities=33%  Similarity=0.285  Sum_probs=20.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +...|++.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998853

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.95  E-value=0.00056  Score=47.61  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +.+.|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998853

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.94  E-value=0.00051  Score=47.50  Aligned_cols=33  Identities=9%  Similarity=0.113  Sum_probs=23.5

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      |..+++..++  .-.+++.|+||+|||+++.++.+
T Consensus        48 l~~~~~~iPk--kn~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           48 LKSFLKGTPK--KNCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             HHHHHHTCTT--CSEEEEESCGGGCHHHHHHHHHH
T ss_pred             HHHHHhcCCc--ccEEEEECCCCCCHHHHHHHHHH
Confidence            4444444332  34599999999999999888764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.93  E-value=0.0011  Score=46.43  Aligned_cols=25  Identities=16%  Similarity=0.135  Sum_probs=22.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..-.+++.|++|+|||++++.+...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999998653

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.93  E-value=0.0006  Score=47.01  Aligned_cols=24  Identities=38%  Similarity=0.337  Sum_probs=21.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +...|++.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999999964

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.93  E-value=0.00053  Score=46.16  Aligned_cols=25  Identities=32%  Similarity=0.287  Sum_probs=21.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+...|++.|++||||||+.+.+..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            3456799999999999999999863

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.93  E-value=0.0006  Score=47.09  Aligned_cols=25  Identities=36%  Similarity=0.454  Sum_probs=21.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++...|++.|.+||||||+.+.|..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999964

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.92  E-value=0.00055  Score=47.97  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHh
Q 030192           16 KEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      +...|+++|++||||||+.+.|.
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999985

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.91  E-value=0.00059  Score=45.29  Aligned_cols=22  Identities=36%  Similarity=0.554  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999854

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.91  E-value=0.00058  Score=46.72  Aligned_cols=26  Identities=27%  Similarity=0.244  Sum_probs=22.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+...|+|+|++||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            45678999999999999999998754

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.91  E-value=0.00062  Score=45.96  Aligned_cols=23  Identities=35%  Similarity=0.449  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999853

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.90  E-value=0.0007  Score=51.22  Aligned_cols=26  Identities=27%  Similarity=0.262  Sum_probs=22.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ...-.++++|++||||||+++.+.+.
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            44557999999999999999999763

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.89  E-value=0.0006  Score=46.78  Aligned_cols=25  Identities=32%  Similarity=0.255  Sum_probs=21.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+...|++.|.+||||||+.+.|..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999998863

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.89  E-value=0.00036  Score=51.39  Aligned_cols=27  Identities=33%  Similarity=0.248  Sum_probs=22.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +..-.++++|++|||||||++.+.+-.
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            345579999999999999999997643

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.89  E-value=0.00057  Score=48.08  Aligned_cols=26  Identities=27%  Similarity=0.335  Sum_probs=22.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+..-|+|.|+.||||||+++.+.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            55678999999999999999999764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.89  E-value=0.00044  Score=46.58  Aligned_cols=24  Identities=25%  Similarity=0.169  Sum_probs=16.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +...|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999853

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.88  E-value=0.00059  Score=49.14  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      .-.++++|+.|||||||++.+.+-.
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            4468999999999999999998764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.88  E-value=0.0006  Score=47.58  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +...|+++|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999853

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.87  E-value=0.00061  Score=49.70  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=21.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ....-|++.|++||||||+.+.+..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999964

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.85  E-value=0.00094  Score=51.29  Aligned_cols=32  Identities=34%  Similarity=0.458  Sum_probs=24.1

Q ss_pred             HHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192            9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus         9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      +.++.....=.++|+|++||||||+++.+.+.
T Consensus       159 L~~l~~~~ggii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          159 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence            33333344446899999999999999999763

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.84  E-value=0.00077  Score=48.13  Aligned_cols=24  Identities=29%  Similarity=0.221  Sum_probs=21.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHh
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      .....|+|+|++||||||+.+.+.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999997

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.84  E-value=0.00069  Score=47.40  Aligned_cols=22  Identities=36%  Similarity=0.391  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +.|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999853

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.83  E-value=0.00049  Score=45.13  Aligned_cols=26  Identities=23%  Similarity=0.247  Sum_probs=22.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|++|+|||+|++.+.+..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            44578999999999999999997643

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.83  E-value=0.00059  Score=51.43  Aligned_cols=27  Identities=30%  Similarity=0.342  Sum_probs=23.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +..-.++++|++|||||||++.+.+..
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            456689999999999999999998754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.83  E-value=0.00052  Score=51.75  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=22.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      .-+++|+|++|||||||++.+.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999997643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.82  E-value=0.00064  Score=50.61  Aligned_cols=26  Identities=19%  Similarity=0.167  Sum_probs=22.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|++|||||||++.+.+-.
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44589999999999999999998754

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.81  E-value=0.0007  Score=49.46  Aligned_cols=26  Identities=23%  Similarity=0.281  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            34478999999999999999998754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.81  E-value=0.00078  Score=45.67  Aligned_cols=21  Identities=43%  Similarity=0.444  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999964

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.80  E-value=0.0015  Score=50.56  Aligned_cols=35  Identities=11%  Similarity=0.211  Sum_probs=25.8

Q ss_pred             hHHHHHHh--hhcccccEEEEEcCCCCChHHHHhhHh
Q 030192            4 TFTKLFSR--LFAKKEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus         4 ~~~~~~~~--~~~~~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      ++..++.+  .......-|.|+|+.++|||+|+|.++
T Consensus        52 Al~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           52 ALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             HHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             HHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHH
Confidence            45555554  234566777899999999999999664

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.80  E-value=0.00067  Score=51.09  Aligned_cols=26  Identities=27%  Similarity=0.314  Sum_probs=22.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..--++++|+.|||||||++.+.+-.
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            44568999999999999999998744

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.79  E-value=0.00067  Score=45.46  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +|.++|++||||||+.+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998853

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.79  E-value=0.00069  Score=50.95  Aligned_cols=26  Identities=31%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..--++++|+.|||||||++.+.+-.
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCC
Confidence            34468999999999999999998754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.78  E-value=0.00087  Score=45.66  Aligned_cols=23  Identities=30%  Similarity=0.229  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...|++.|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998854

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.77  E-value=0.0015  Score=44.97  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=20.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ....+++.|++|+|||++++.+...
T Consensus        37 ~~~~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           37 NIPHLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3335999999999999999998653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.75  E-value=0.00076  Score=53.17  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=22.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ....++++|++||||||+++.+.+.-
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            44569999999999999999998643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.75  E-value=0.00099  Score=48.99  Aligned_cols=124  Identities=18%  Similarity=0.146  Sum_probs=67.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc--------c---ccC-----------ccceeEEEEE----------------
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV--------T---TIP-----------TIGFNVETVE----------------   57 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--------~---~~~-----------~~~~~~~~~~----------------   57 (181)
                      +.-.++++|++||||||+++.+.+...+        .   ..+           ..++.+....                
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999999642100        0   000           0011111000                


Q ss_pred             -ECCEEEEEEEcCCCCCcccc------------hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEE
Q 030192           58 -YKNISFTVWDVGGQDKIRPL------------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF  124 (181)
Q Consensus        58 -~~~~~~~i~D~~g~~~~~~~------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv  124 (181)
                       ..+....+.|++|.......            ........+.+++++|........+....+.....       ..+++
T Consensus       181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~-------~t~ii  253 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVI  253 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEE
T ss_pred             HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcC-------CcEEE
Confidence             02345678999996432211            11223457888899998765444333333332222       24788


Q ss_pred             EeCCCCCCC-CCHhHHHhhhCCC
Q 030192          125 ANKQDLPNA-MNAAEITDKLGLH  146 (181)
Q Consensus       125 ~nK~Dl~~~-~~~~~~~~~~~~~  146 (181)
                      +||.|.... -..-.+....+.+
T Consensus       254 vTh~d~~a~gg~~l~i~~~~~~p  276 (304)
T 1rj9_A          254 VTKLDGTAKGGVLIPIVRTLKVP  276 (304)
T ss_dssp             EECTTSSCCCTTHHHHHHHHCCC
T ss_pred             EECCcccccccHHHHHHHHHCCC
Confidence            999996532 2344555555544

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.73  E-value=0.00097  Score=46.32  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.73  E-value=0.001  Score=44.54  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..+.++|++|||||||+.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.72  E-value=0.00084  Score=50.41  Aligned_cols=26  Identities=31%  Similarity=0.290  Sum_probs=22.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44468999999999999999998754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.72  E-value=0.001  Score=44.69  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=21.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +...|+++|.+||||||+.+.|..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999865

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.71  E-value=0.0017  Score=47.01  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChHHHHhhHhcC
Q 030192           20 ILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~   40 (181)
                      +++.|++|+|||+|++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999763

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.71  E-value=0.00085  Score=50.83  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=22.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..--++++|+.|||||||++.+.+-.
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            44468999999999999999998754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.71  E-value=0.0011  Score=44.90  Aligned_cols=23  Identities=17%  Similarity=0.179  Sum_probs=20.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...|++.|.+||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998853

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.71  E-value=0.00087  Score=50.42  Aligned_cols=26  Identities=27%  Similarity=0.202  Sum_probs=22.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            44468999999999999999998743

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.70  E-value=0.00083  Score=49.35  Aligned_cols=24  Identities=46%  Similarity=0.587  Sum_probs=20.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..--++++|++||||||+++.+.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            344789999999999999999964

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.70  E-value=0.0012  Score=46.52  Aligned_cols=25  Identities=36%  Similarity=0.400  Sum_probs=21.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .....|++.|.+||||||+.+.|..
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999998853

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.69  E-value=0.0011  Score=47.34  Aligned_cols=27  Identities=22%  Similarity=0.214  Sum_probs=21.3

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhc
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...+.+.|+|.|++||||||+.+.|..
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            334667899999999999999998854

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.69  E-value=0.00091  Score=50.37  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=22.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCC
Confidence            44468999999999999999998754

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.68  E-value=0.00036  Score=48.22  Aligned_cols=21  Identities=43%  Similarity=0.542  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.66  E-value=0.00074  Score=48.21  Aligned_cols=25  Identities=40%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .....|+++|++||||||+.+.+..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999998853

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.66  E-value=0.0012  Score=46.63  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=20.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHh
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      .+.+.|.+.|++||||||+.+.+.
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            356789999999999999999886

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.66  E-value=0.001  Score=44.24  Aligned_cols=21  Identities=38%  Similarity=0.455  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998853

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.65  E-value=0.001  Score=50.37  Aligned_cols=26  Identities=27%  Similarity=0.289  Sum_probs=22.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..--++++|+.|||||||++.+.+-.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            34468999999999999999998754

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.65  E-value=0.002  Score=45.81  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      -++++|++|+|||+|++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.64  E-value=0.001  Score=44.81  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999988853

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.64  E-value=0.0012  Score=47.36  Aligned_cols=23  Identities=35%  Similarity=0.470  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...|+++|.+||||||+.+.+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.64  E-value=0.0017  Score=44.95  Aligned_cols=27  Identities=30%  Similarity=0.519  Sum_probs=22.6

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhc
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .......|+++|.+||||||+.+.+..
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            345567899999999999999999864

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.63  E-value=0.001  Score=50.25  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=22.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            44568999999999999999997643

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.63  E-value=0.015  Score=40.19  Aligned_cols=68  Identities=4%  Similarity=-0.077  Sum_probs=44.0

Q ss_pred             CCEEEEEEEcCCC-CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           59 KNISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        59 ~~~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      ..+.+.++|+|+. ...  .....+..+|.++++...+ ..++......+..+....   +.++.+|+|+.|...
T Consensus        66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP  134 (209)
T ss_dssp             GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred             hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence            3577999999987 433  2344567899999999875 334444444433332211   456889999999654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.63  E-value=0.0011  Score=46.28  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=20.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..--++++|++|+|||||+..+..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            344688999999999999999974

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.63  E-value=0.0011  Score=44.64  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      -.+|+|+.|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999853

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.62  E-value=0.0011  Score=47.49  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .|+++|++|||||||...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998853

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.61  E-value=0.0013  Score=47.79  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=21.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHh
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      .+.+.|+|.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            446789999999999999999885

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.58  E-value=0.0014  Score=43.54  Aligned_cols=21  Identities=24%  Similarity=0.621  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .|++.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998843

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.58  E-value=0.0025  Score=43.59  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..+++.|++|+|||+|+..+.+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999988653

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.56  E-value=0.0012  Score=50.20  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=21.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..-.++++|++|||||||++.+.+-
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCC
Confidence            4457899999999999999999764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.55  E-value=0.00082  Score=50.35  Aligned_cols=26  Identities=23%  Similarity=0.184  Sum_probs=22.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCC
Confidence            44468999999999999999998754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.0015  Score=50.82  Aligned_cols=29  Identities=24%  Similarity=0.210  Sum_probs=24.2

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      .-+..-.++++|+.|||||||++.+.+-.
T Consensus       134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            33566789999999999999999997654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.52  E-value=0.0013  Score=47.98  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=20.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..--++++|++|+|||||+..+.+
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            444689999999999999999864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.52  E-value=0.0013  Score=43.02  Aligned_cols=19  Identities=26%  Similarity=0.574  Sum_probs=17.2

Q ss_pred             EEEEcCCCCChHHHHhhHh
Q 030192           20 ILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~   38 (181)
                      .+|+|+.|+||||+++.+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4799999999999999984

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.51  E-value=0.0022  Score=46.08  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=23.0

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ......+++.|++|+|||++...+...
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            455678999999999999999998753

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.51  E-value=0.0025  Score=47.40  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=21.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+..++++.|++|+||||+++.+.+.
T Consensus        44 g~~~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           44 GKLPHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             TCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            33345899999999999999998754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.50  E-value=0.0028  Score=45.78  Aligned_cols=26  Identities=23%  Similarity=0.277  Sum_probs=22.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .....+++.|++|+|||++++.+.+.
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            45567999999999999999999653

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.50  E-value=0.0017  Score=45.68  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=21.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +...|++.|++||||||+++.+..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            567899999999999999999964

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.49  E-value=0.0014  Score=48.79  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      -.+++.|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.48  E-value=0.0029  Score=45.64  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .++++|++|+|||+|++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999999754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.48  E-value=0.0018  Score=45.21  Aligned_cols=21  Identities=33%  Similarity=0.311  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      -|+++|+|||||+|....+..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            466789999999999988854

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.47  E-value=0.0016  Score=45.10  Aligned_cols=24  Identities=29%  Similarity=0.290  Sum_probs=20.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..--++++|++|+|||||+..+..
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            344689999999999999999976

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.47  E-value=0.0022  Score=47.84  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .++++.|++|+||||+++.+.+
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3499999999999999999876

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.44  E-value=0.0032  Score=47.22  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=21.5

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhc
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +....+|+++|++|+||||+...+.+
T Consensus        21 ~g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           21 DNYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence            44556899999999999999987743

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.42  E-value=0.00081  Score=50.49  Aligned_cols=26  Identities=27%  Similarity=0.287  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+-.
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44568999999999999999998754

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.42  E-value=0.0036  Score=40.57  Aligned_cols=27  Identities=15%  Similarity=0.180  Sum_probs=23.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      .....|++.|++|+|||++.+.+....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            566789999999999999999987543

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.42  E-value=0.0032  Score=49.12  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=26.0

Q ss_pred             HHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192            7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus         7 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+...+.....-+++++|+||+|||++++.+...
T Consensus       191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence            3444444456678999999999999999988653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.41  E-value=0.0017  Score=48.79  Aligned_cols=24  Identities=46%  Similarity=0.587  Sum_probs=20.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..-.++++|++||||||+++.+.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            345789999999999999999964

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.41  E-value=0.0017  Score=45.60  Aligned_cols=25  Identities=28%  Similarity=0.173  Sum_probs=21.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..--++++|++|+|||||+..+...
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4457899999999999999999863

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.40  E-value=0.0017  Score=50.76  Aligned_cols=24  Identities=46%  Similarity=0.600  Sum_probs=20.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..-.++|+|++||||||+++.+.+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHH
Confidence            445789999999999999999954

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.39  E-value=0.0018  Score=46.20  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ...+++.|++|+|||++++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999999753

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.39  E-value=0.0038  Score=45.56  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=20.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .....+++.|++|+|||++.+.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999987654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.36  E-value=0.0033  Score=43.70  Aligned_cols=21  Identities=33%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+++.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.34  E-value=0.0021  Score=45.85  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .-.|+++|++||||||+.+.+..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999998854

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.34  E-value=0.0021  Score=48.20  Aligned_cols=29  Identities=24%  Similarity=0.188  Sum_probs=24.6

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +-.+.=+++++|+.|+|||||++.+.+..
T Consensus        67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           67 TCGIGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             eecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33566789999999999999999998764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.33  E-value=0.0034  Score=40.66  Aligned_cols=26  Identities=12%  Similarity=0.167  Sum_probs=22.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .....|++.|++|+|||++.+.+...
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHh
Confidence            45578999999999999999988754

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.32  E-value=0.0022  Score=43.85  Aligned_cols=24  Identities=33%  Similarity=0.295  Sum_probs=20.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ....|++.|.+||||||+.+.|..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998854

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.31  E-value=0.0017  Score=47.99  Aligned_cols=22  Identities=36%  Similarity=0.440  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      -++++|+.|||||||++.+.+.
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEecCCCCHHHHHHHHHhh
Confidence            5689999999999999999865

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.29  E-value=0.004  Score=46.25  Aligned_cols=34  Identities=24%  Similarity=0.247  Sum_probs=24.1

Q ss_pred             HHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192            7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus         7 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+...+...+.-.+++.|++|+|||++++.+.+.
T Consensus        48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3333333333345999999999999999998754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.28  E-value=0.0022  Score=46.77  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..|++.|.+||||||+.+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.27  E-value=0.0031  Score=47.76  Aligned_cols=25  Identities=32%  Similarity=0.223  Sum_probs=21.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...-.++++|++|+|||||++.+.+
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHh
Confidence            4556899999999999999999975

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.26  E-value=0.0031  Score=44.38  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+...|+++|++||||||+.+.+..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.24  E-value=0.0024  Score=51.16  Aligned_cols=26  Identities=23%  Similarity=0.222  Sum_probs=22.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|++|||||||++.+.+-.
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            44579999999999999999998643

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.21  E-value=0.005  Score=45.29  Aligned_cols=24  Identities=17%  Similarity=0.229  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ...+++.|++|+|||+|+..+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999988653

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.20  E-value=0.0041  Score=46.79  Aligned_cols=22  Identities=36%  Similarity=0.341  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+++.|++|+|||++++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.20  E-value=0.0048  Score=45.14  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=21.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .....+++.|++|+|||++++.+.+.
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHH
Confidence            34557999999999999999999753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.19  E-value=0.0025  Score=49.78  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      -.++++|+.|||||||++.+.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            5679999999999999999965

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.19  E-value=0.0032  Score=44.30  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=20.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..++++++|+|||||||+...+..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            357899999999999999998854

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.18  E-value=0.0022  Score=51.30  Aligned_cols=27  Identities=22%  Similarity=0.337  Sum_probs=22.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +..-.++++|++|||||||++.+.+-.
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            345588999999999999999997644

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.18  E-value=0.0029  Score=50.24  Aligned_cols=26  Identities=27%  Similarity=0.270  Sum_probs=22.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|||||||++.+.+..
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578999999999999999998754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.16  E-value=0.0029  Score=45.33  Aligned_cols=26  Identities=35%  Similarity=0.294  Sum_probs=22.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ++...|+|.|..||||||+++.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            46678999999999999999998653

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.16  E-value=0.0028  Score=50.80  Aligned_cols=27  Identities=22%  Similarity=0.226  Sum_probs=22.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +..-.++++|+.|||||||++.+.+-.
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345588999999999999999998643

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.15  E-value=0.0029  Score=47.75  Aligned_cols=22  Identities=18%  Similarity=0.448  Sum_probs=18.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHh
Q 030192           16 KEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      ..+ .+|+|+.|||||||++.+.
T Consensus        23 ~g~-~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           23 SGI-TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             SEE-EEEECCTTSSHHHHHHHHH
T ss_pred             CCe-EEEECCCCCCHHHHHHHHH
Confidence            344 5699999999999999985

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.003  Score=46.73  Aligned_cols=30  Identities=10%  Similarity=0.144  Sum_probs=24.9

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .......-.+.+.|+||+|||++++.+...
T Consensus        39 ~i~~~~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           39 SLMSSQNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             HHHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             HhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            344567789999999999999999999754

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.15  E-value=0.002  Score=46.98  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=17.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +.+-|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998853

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.14  E-value=0.0028  Score=50.33  Aligned_cols=26  Identities=27%  Similarity=0.273  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..--++++|+.|||||||++.+.+..
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            44568999999999999999998754

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.13  E-value=0.0062  Score=45.60  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      -.+++.|++|+|||++++.+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.12  E-value=0.0026  Score=51.10  Aligned_cols=27  Identities=33%  Similarity=0.336  Sum_probs=22.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +..-.++++|++|||||||++.+.+-.
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            345589999999999999999998644

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.12  E-value=0.003  Score=45.67  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=20.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..--++++|++|+|||||+..+..
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            344689999999999999999864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.11  E-value=0.0031  Score=48.73  Aligned_cols=29  Identities=14%  Similarity=0.110  Sum_probs=24.3

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +-.+.=+++++|++|+|||||++.+.+..
T Consensus       153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          153 TVGRGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            33566689999999999999999998754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.08  E-value=0.0031  Score=45.83  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=21.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ....+++.|++|+|||++++.+.+.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHH
Confidence            3568999999999999999999753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.05  E-value=0.0038  Score=42.90  Aligned_cols=26  Identities=19%  Similarity=0.280  Sum_probs=21.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ...-|+|+|++|+|||+|...|....
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            34568999999999999999997543

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.05  E-value=0.003  Score=50.69  Aligned_cols=26  Identities=15%  Similarity=0.188  Sum_probs=22.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|++|||||||++.+.+-.
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            44588999999999999999997643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.05  E-value=0.0041  Score=42.59  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.02  E-value=0.0044  Score=45.20  Aligned_cols=24  Identities=13%  Similarity=-0.043  Sum_probs=20.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...-+++.|+||+|||++.+.+..
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345678889999999999999864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.0035  Score=50.46  Aligned_cols=26  Identities=27%  Similarity=0.258  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|+|||||++.+.+-.
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            44578999999999999999998744

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.02  E-value=0.0048  Score=43.83  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ....+++.|++|+|||++++.+..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999965

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.01  E-value=0.0043  Score=47.62  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=21.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ....-|+++|.+||||||+.+++..
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999875

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.01  E-value=0.0038  Score=43.86  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=18.6

Q ss_pred             ccEEEEEcCCCCChHHHHhhHh
Q 030192           17 EMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      .--+++.|++|+|||+|+.++.
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3467999999999999988774

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.99  E-value=0.0049  Score=45.13  Aligned_cols=110  Identities=18%  Similarity=0.196  Sum_probs=59.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc------C-Cc--cc---ccCc-----------cceeEEEE-----------EECCE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL------G-EI--VT---TIPT-----------IGFNVETV-----------EYKNI   61 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~------~-~~--~~---~~~~-----------~~~~~~~~-----------~~~~~   61 (181)
                      +.-.++++|++|+||||++..+..      + +.  ..   ..+.           .+......           ...+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~  183 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY  183 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence            456899999999999999998842      1 10  00   0000           01100000           01456


Q ss_pred             EEEEEEcCCCCCcccc----hhhccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           62 SFTVWDVGGQDKIRPL----WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        62 ~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      .+.++||+|.......    ....+.  ..+.+++|+|++.  ....+.++.    ......+ ..-+|+||.|...
T Consensus       184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~--~~~~~~~~~----~~~~~l~-~~giVltk~D~~~  253 (296)
T 2px0_A          184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATA--KYEDMKHIV----KRFSSVP-VNQYIFTKIDETT  253 (296)
T ss_dssp             SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTB--CHHHHHHHT----TTTSSSC-CCEEEEECTTTCS
T ss_pred             CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCC--CHHHHHHHH----HHHhcCC-CCEEEEeCCCccc
Confidence            7999999997654321    112222  4678899998863  233333322    2211112 2345669999764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.94  E-value=0.0062  Score=45.59  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=22.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ...-.+++.|++|+|||+|++.+.+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999753

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.93  E-value=0.004  Score=46.67  Aligned_cols=25  Identities=20%  Similarity=0.157  Sum_probs=21.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..--+.++|++|+|||||+..+...
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4457899999999999999999754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.92  E-value=0.004  Score=45.91  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .-.+++.|++|+|||+|++.+.+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999998753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.92  E-value=0.004  Score=49.38  Aligned_cols=26  Identities=27%  Similarity=0.123  Sum_probs=22.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEI   42 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~   42 (181)
                      .-.++++|+.|||||||++.+.+-..
T Consensus       294 Gei~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          294 GEIIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34689999999999999999987543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.89  E-value=0.0046  Score=49.81  Aligned_cols=26  Identities=31%  Similarity=0.273  Sum_probs=22.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ..-.++++|+.|+|||||++.+.+..
T Consensus       116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          116 DGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            44578999999999999999998754

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.88  E-value=0.0085  Score=49.45  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=28.2

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      +..+...+.......++++|++|+|||++++.+...
T Consensus       195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~  230 (758)
T 1r6b_X          195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence            344555555567789999999999999999998653

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.88  E-value=0.009  Score=43.75  Aligned_cols=26  Identities=27%  Similarity=0.270  Sum_probs=21.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+...+++.|++|+|||++++.+...
T Consensus        44 ~~~~~~ll~G~~G~GKT~la~~l~~~   69 (327)
T 1iqp_A           44 GSMPHLLFAGPPGVGKTTAALALARE   69 (327)
T ss_dssp             TCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence            33346999999999999999998754

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.88  E-value=0.0048  Score=42.51  Aligned_cols=20  Identities=25%  Similarity=0.506  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChHHHHhhHh
Q 030192           19 RILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~   38 (181)
                      -.+|+|+.|+||||+++.+.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            34789999999999999883

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.87  E-value=0.0045  Score=45.52  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=19.7

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .-.++++|++|+||||++..+.+
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHH
Confidence            34689999999999999998853

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.85  E-value=0.0048  Score=46.01  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .-|+|+|++|||||||...+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988854

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.84  E-value=0.0051  Score=42.56  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+.|++.|++||||||+.+.+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988854

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.84  E-value=0.0084  Score=49.53  Aligned_cols=35  Identities=20%  Similarity=0.269  Sum_probs=26.8

Q ss_pred             HHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192            6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus         6 ~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..+...+.....-++++.|+||+|||++++.+...
T Consensus       190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~  224 (758)
T 3pxi_A          190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ  224 (758)
T ss_dssp             HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence            34444454566678999999999999999988654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.83  E-value=0.0052  Score=48.78  Aligned_cols=27  Identities=37%  Similarity=0.261  Sum_probs=22.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEI   42 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~   42 (181)
                      ..-.++++|+.|||||||++.+.+...
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345789999999999999999987643

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.83  E-value=0.0034  Score=54.94  Aligned_cols=25  Identities=24%  Similarity=0.396  Sum_probs=21.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +..-+|++||++|||||||++.+.+
T Consensus      1103 ~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1103 EPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             CTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhc
Confidence            3455899999999999999999975

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.82  E-value=0.0058  Score=43.11  Aligned_cols=23  Identities=30%  Similarity=0.299  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...|++.|..||||||+++.+..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35789999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.78  E-value=0.0051  Score=49.55  Aligned_cols=27  Identities=37%  Similarity=0.261  Sum_probs=22.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEI   42 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~   42 (181)
                      ..-.++++|+.|+|||||++.+.+...
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            344689999999999999999987543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.78  E-value=0.0092  Score=46.00  Aligned_cols=26  Identities=23%  Similarity=0.217  Sum_probs=22.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ....-|++.||||+|||+|.+++.+.
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence            34568999999999999999999753

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.77  E-value=0.0055  Score=44.60  Aligned_cols=24  Identities=38%  Similarity=0.504  Sum_probs=21.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ....+++.|++|+|||++++.+..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.74  E-value=0.0055  Score=45.35  Aligned_cols=22  Identities=36%  Similarity=0.446  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..|+++|++|||||||...+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988854

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.73  E-value=0.0076  Score=44.86  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .-|+|+|++|||||+|...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998653

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.73  E-value=0.0069  Score=44.65  Aligned_cols=23  Identities=30%  Similarity=0.273  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .-|+|+|++|||||+|...+...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            45889999999999999999643

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.73  E-value=0.011  Score=43.22  Aligned_cols=26  Identities=23%  Similarity=0.281  Sum_probs=21.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+...+++.|++|+|||++++.+...
T Consensus        40 ~~~~~~ll~G~~G~GKt~la~~l~~~   65 (323)
T 1sxj_B           40 GNMPHMIISGMPGIGKTTSVHCLAHE   65 (323)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence            33345999999999999999988654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.72  E-value=0.009  Score=44.86  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=21.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..-.+++.|++|+|||++++.+...
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999753

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.71  E-value=0.0063  Score=41.14  Aligned_cols=21  Identities=29%  Similarity=0.227  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHhhHhcC
Q 030192           20 ILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ++|+|.++||||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999999754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.69  E-value=0.0059  Score=42.89  Aligned_cols=25  Identities=36%  Similarity=0.307  Sum_probs=18.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+..-|+|.|++||||||+++.+..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.68  E-value=0.0072  Score=44.08  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      -.+++.|++|+|||++.+.+.+.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999988654

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.68  E-value=0.0097  Score=43.40  Aligned_cols=26  Identities=27%  Similarity=0.298  Sum_probs=21.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+...+++.|++|+|||++++.+...
T Consensus        36 ~~~~~~ll~G~~G~GKt~la~~l~~~   61 (319)
T 2chq_A           36 KNIPHLLFSGPPGTGKTATAIALARD   61 (319)
T ss_dssp             TCCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECcCCcCHHHHHHHHHHH
Confidence            33345999999999999999988653

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.67  E-value=0.0066  Score=48.28  Aligned_cols=26  Identities=27%  Similarity=0.515  Sum_probs=22.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+...+.++|++|||||||.+.+.+.
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHh
Confidence            46678999999999999999998653

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.65  E-value=0.011  Score=45.54  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...-|++.||||+|||++.+++.+
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            344699999999999999999975

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.0062  Score=49.04  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV   43 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~   43 (181)
                      .++++|+.|+|||||++.+.+-..+
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC
Confidence            4799999999999999999876543

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.63  E-value=0.012  Score=43.43  Aligned_cols=26  Identities=27%  Similarity=0.259  Sum_probs=21.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .....+++.|++|+|||++.+.+...
T Consensus        53 ~~~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           53 ECLDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence            34457999999999999999999543

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.59  E-value=0.0047  Score=44.19  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...+++.|++|+|||++++.+.+
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHH
Confidence            34589999999999999999965

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.59  E-value=0.0066  Score=44.92  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..+++.|++|+|||+|.+.+.+.
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            57999999999999999999753

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.59  E-value=0.012  Score=45.39  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=22.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .-..-|++.||||+|||+|.+++.+.
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            34568999999999999999999753

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.59  E-value=0.0086  Score=41.61  Aligned_cols=24  Identities=25%  Similarity=0.227  Sum_probs=20.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +..-|++.|.+||||||+++.+..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            457799999999999999999853

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.58  E-value=0.007  Score=44.51  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .-|+|+|++|||||+|...+..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHH
Confidence            4578999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-51
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	5e-46
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	5e-41
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-38
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-38
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-38
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	7e-35
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-33
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-33
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	9e-31
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	3e-30
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-29
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	8e-26
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-25
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-25
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	8e-25
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	9e-24
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-23
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-22
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	8e-21
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-20
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	6e-20
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-19
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	9e-18
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-17
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-17
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	9e-17
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-16
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-14
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	8e-14
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	3e-13
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-12
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	3e-12
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	4e-12
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-11
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-11
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	6e-11
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-10
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	4e-10
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	6e-09
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	6e-09
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-08
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-08
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-08
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	5e-08
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-07
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-07
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-06
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-06
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-06
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	4e-06
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-05
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-05
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	3e-05
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-04
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-04
d1ls1a2	207	c.37.1.10 (A:89-295) GTPase domain of the signal s	4e-04
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	5e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.002
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	0.002

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  160 bits (404), Expect = 3e-51
 Identities = 122/171 (71%), Positives = 147/171 (85%)

Query: 7   KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
           K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VW
Sbjct: 2   KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61

Query: 67  DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
           DVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FAN
Sbjct: 62  DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121

Query: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           KQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N 
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  147 bits (371), Expect = 5e-46
 Identities = 101/180 (56%), Positives = 134/180 (74%), Gaps = 1/180 (0%)

Query: 2   GLTFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
           G  F+ +F +L+   KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YKN
Sbjct: 1   GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN 60

Query: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
           +   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D+DR+  A  ELH ML E+EL+DA 
Sbjct: 61  LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 120

Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           LLVFANKQD P A++A+E++ +L L  L+ R W I ++ A  GEG+ EGLDWL + I  +
Sbjct: 121 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  134 bits (338), Expect = 5e-41
 Identities = 84/176 (47%), Positives = 124/176 (70%), Gaps = 1/176 (0%)

Query: 2   GLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
           G+ FT+++ RLF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N 
Sbjct: 1   GILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 59

Query: 62  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL 121
            F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A L
Sbjct: 60  RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 119

Query: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           L+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL +GL+W+ + +
Sbjct: 120 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  127 bits (320), Expect = 1e-38
 Identities = 149/160 (93%), Positives = 155/160 (96%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
           MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 78  WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
           WRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAA
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120

Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           EITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score =  127 bits (319), Expect = 2e-38
 Identities = 81/165 (49%), Positives = 115/165 (69%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
           +E+R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ  +R
Sbjct: 1   RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60

Query: 76  PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
             WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A++
Sbjct: 61  SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120

Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
              I + L L S+R  HW IQ   A +GE L  G+DWL ++I+S+
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score =  126 bits (316), Expect = 7e-38
 Identities = 80/172 (46%), Positives = 115/172 (66%), Gaps = 2/172 (1%)

Query: 8   LFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV 65
           +  +L +   +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     V
Sbjct: 5   ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNV 64

Query: 66  WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125
           WD+GGQ KIRP WR YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FA
Sbjct: 65  WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124

Query: 126 NKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           NKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ +G++W+  N+
Sbjct: 125 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score =  119 bits (297), Expect = 7e-35
 Identities = 49/185 (26%), Positives = 95/185 (51%), Gaps = 13/185 (7%)

Query: 6   TKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
           + +   L   KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT
Sbjct: 1   SSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 60

Query: 65  VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
            +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ + +  +L+ 
Sbjct: 61  TFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 120

Query: 125 ANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDW 172
            NK D P A++   + +  GL+             L  R   +        +G  EG  W
Sbjct: 121 GNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRW 180

Query: 173 LSNNI 177
           ++  I
Sbjct: 181 MAQYI 185

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (286), Expect = 2e-33
 Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 7/163 (4%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
           ++L +GLD AGKTT+L+ LK   + T  PT     E +   NI FT +D+GG  + R LW
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61

Query: 79  RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
           + YF    G++F+VD+ D +R  EAR EL  + N  EL+D   ++  NK D PNA++ AE
Sbjct: 62  KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121

Query: 139 ITDKLGLHSL-------RQRHWYIQSTCATSGEGLYEGLDWLS 174
           +   LGL +         QR   +         G  E   WLS
Sbjct: 122 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  115 bits (289), Expect = 4e-33
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 13/127 (10%)

Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
           +   R+L++G   +GK+TI+ ++++  +V    T G      +   ++F ++DVGGQ   
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRILHVV---LTSGIFETKFQVDKVNFHMFDVGGQRDE 60

Query: 75  RPLWRHYFQNTQGLIFVV----------DSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
           R  W   F +   +IFVV          + N  +R+ EA +    + N   LR   +++F
Sbjct: 61  RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120

Query: 125 ANKQDLP 131
            NKQDL 
Sbjct: 121 LNKQDLL 127

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (271), Expect = 9e-31
 Identities = 38/195 (19%), Positives = 83/195 (42%), Gaps = 34/195 (17%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
           +E+++L++G   +GK+T + ++++    + +PT G      + +++ F + DVGGQ   R
Sbjct: 1   RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59

Query: 76  PLWRHYFQNTQGLIFVVDSNDRDRVV----------EARDELHRMLNEDELRDAVLLVFA 125
             W H F+N   ++F+V  ++ D+V+          E++     ++     +++ +++F 
Sbjct: 60  RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119

Query: 126 NKQDLPNAMNAAEITDK-----------------------LGLHSLRQRHWYIQSTCATS 162
           NK+DL                                   + L+    +  Y   TCAT 
Sbjct: 120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 179

Query: 163 GEGLYEGLDWLSNNI 177
            E +      + + I
Sbjct: 180 TENIRFVFAAVKDTI 194

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score =  106 bits (265), Expect = 3e-30
 Identities = 49/163 (30%), Positives = 96/163 (58%), Gaps = 1/163 (0%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
           +EM + +VGL  +GKTT +  +  G+     IPT+GFN+  +   N++  +WD+GGQ + 
Sbjct: 1   EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60

Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
           R +W  Y +    ++++VD+ D++++  +++ELH +L++ +L+   +LV  NK+DLP A+
Sbjct: 61  RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120

Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           +  E+ +K+ L +++ R     S      + +   L WL  + 
Sbjct: 121 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score =  102 bits (255), Expect = 8e-29
 Identities = 96/166 (57%), Positives = 125/166 (75%)

Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
            +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG   I
Sbjct: 3   TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 62

Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
           RP WR Y+ NT  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANKQD+  AM
Sbjct: 63  RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122

Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
            ++E+ + LGL +L+ R W I  T AT G GL E ++WL   + S+
Sbjct: 123 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.2 bits (236), Expect = 8e-26
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 10/168 (5%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
           M+IL++G    GK+ +L +    +   + I TIG + +     +  K +   +WD  GQ+
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R +   Y++   G+I V D  D       +     +         +LLV  NK D+  
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLV-GNKSDMET 121

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
            +  A+     G    ++       + A + + + E    L+  I  K
Sbjct: 122 RVVTADQ----GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.0 bits (235), Expect = 2e-25
 Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 37/195 (18%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
           +E+++L++G   +GK+TI+ ++K+          G       +K++ F ++DVGGQ   R
Sbjct: 1   REVKLLLLGAGESGKSTIVKQMKIIH----EAGTGIVETHFTFKDLHFKMFDVGGQRSER 56

Query: 76  PLWRHYFQNTQGLIFVVDSNDRDRVVEAR----------DELHRMLNEDELRDAVLLVFA 125
             W H F+    +IF V  +D D V+                  + N     D  +++F 
Sbjct: 57  KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116

Query: 126 N-KQDLPNAMNAAEITDKLGLH----------------------SLRQRHWYIQSTCATS 162
           N K      +  + +T     +                          +  Y   TCAT 
Sbjct: 117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATD 176

Query: 163 GEGLYEGLDWLSNNI 177
            + +    D +++ I
Sbjct: 177 TKNVQFVFDAVTDVI 191

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.3 bits (231), Expect = 4e-25
 Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 9/168 (5%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
            ++L++G    GKT +L++        T I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R +   Y++   G++ V D  +       R+ +  +          +++         
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
              + E     G             T A +   +      L+ +I +K
Sbjct: 127 RQVSKER----GEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.4 bits (231), Expect = 8e-25
 Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 36/183 (19%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
           + ++IL++G   +GK+T L ++++       PT G +    E KN+ F + DVGGQ   R
Sbjct: 1   RLVKILLLGAGESGKSTFLKQMRIIH--GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58

Query: 76  PLWRHYFQNTQGLIFVVDSNDRDRVV----------EARDELHRMLNEDELRDAVLLVFA 125
             W   F +   ++F+V S++ D+V+          E+ +    ++N     +  +++F 
Sbjct: 59  KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 118

Query: 126 NKQ-DLPNAMNAAEITDKLG-----------------------LHSLRQRHWYIQSTCAT 161
           NK   L   +    I D                              +QR  Y   T A 
Sbjct: 119 NKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAI 178

Query: 162 SGE 164
           + E
Sbjct: 179 NTE 181

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (222), Expect = 9e-24
 Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 9/166 (5%)

Query: 17  EMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEYKNISFTVWDVGGQ 71
            ++IL++G    GK+++L +         +             +V+       +WD  GQ
Sbjct: 7   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           ++ R L   Y++  QG+I V D   RD  V+  + L+ +       D V ++  NK D  
Sbjct: 67  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-- 124

Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
                 E+    GL   R+         A + +G+    + L   I
Sbjct: 125 --KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.5 bits (223), Expect = 1e-23
 Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 7/151 (4%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN----ISFTVWDVGGQDKIR 75
           +L VGL  +GKT +  +L  G+   T  +I  +    +  N        +   G +    
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 76  PLWRHYFQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAV--LLVFANKQDLPN 132
            L   +  + + ++FVVDS    R V +  + L+++L +         LL+  NKQD+  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
           A +A  I  +L       R     +      
Sbjct: 123 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 153

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.1 bits (212), Expect = 6e-22
 Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 9/165 (5%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
            ++L++G    GK+ +L +          I TIG + +     ++ K +   +WD  GQ+
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R +   Y++ + G+I V D  D++     +  L  +          LLV         
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
            +   ++                  T A     + +    ++  I
Sbjct: 127 RVVEYDVAK----EFADANKMPFLETSALDSTNVEDAFLTMARQI 167

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 8e-21
 Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 9/168 (5%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-----IGFNVETVEYKNISFTVWDVGGQD 72
            + L++G    GK+ +L++    +             G  +  V  K +   +WD  GQ+
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R + R Y++   G + V D   R+      + L            ++L    K    +
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
                    +      ++       T A +GE + E     +  I +K
Sbjct: 126 REVTFLEASRF----AQENELMFLETSALTGENVEEAFVQCARKILNK 169

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (202), Expect = 1e-20
 Identities = 33/178 (18%), Positives = 71/178 (39%), Gaps = 18/178 (10%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--------------FNVETVEYKNIS 62
           +++L +G    GKTT LY+    +     I T+G               N  + +   + 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
             +WD  GQ++ R L   +F++  G + + D   +   +  R+ + ++       +  ++
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 123 VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           +  NK DLP+     E           +       T A +G+ + + ++ L + I  +
Sbjct: 126 LIGNKADLPDQREVNERQ---ARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.9 bits (196), Expect = 6e-20
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 9/168 (5%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-----VEYKNISFTVWDVGGQD 72
            +IL++G  + GKT+ L++           +               K I   +WD  GQ+
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R +   Y++   G I + D  + +     +D   ++         VLLV         
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
            + ++E              +      A     + +  + L + I  K
Sbjct: 126 RVVSSERGR----QLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (192), Expect = 3e-19
 Identities = 28/166 (16%), Positives = 66/166 (39%), Gaps = 10/166 (6%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET----VEYKNISFTVWDVGGQ 71
            ++++VG    GKT +L + K G  +  T I T+G +       V+   +   +WD  GQ
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           ++ R +   Y+++   L+ + D  ++      +  L  +    +   A++L+        
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS-- 124

Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
              +   +  + G    ++       T A +G  +      ++  +
Sbjct: 125 --AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.3 bits (181), Expect = 9e-18
 Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 6/168 (3%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNI----SFTVWDVGGQD 72
           ++++++G  A GK++I+ +    +      PTIG    T           F +WD  GQ+
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           +   L   Y++N Q  + V D       ++AR  +  +  +   +D ++ +  NK D+  
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDMLQ 122

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
                ++  + G     ++      T A +GE + +    +   I  K
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.7 bits (182), Expect = 1e-17
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
            I++ G   +GKT++L  L    +  T+ +    +   +Y     T+ D  G  K+R   
Sbjct: 5   SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKL 63

Query: 79  RHYFQ-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA---VLLVFANKQDL 130
             Y +         +  V  + D  ++    + L  +L+  E        +L+  NK +L
Sbjct: 64  SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 123

Query: 131 PNAMNAAEITDKL 143
             A   ++I D L
Sbjct: 124 FTARPPSKIKDAL 136

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 4e-17
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 9/165 (5%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG----FNVETVEYKNISFTVWDVGGQD 72
            +++++G    GK+ +L +    E  + +  TIG         V+ K I   +WD  GQ+
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R +   Y++   G + V D             L  + +  +  + V+++  NK DL +
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRH 123

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
                 +          + +     T A     + E    +   I
Sbjct: 124 LRA---VPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 9e-17
 Identities = 28/169 (16%), Positives = 62/169 (36%), Gaps = 9/169 (5%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY--KNISFTVWDVGGQD 72
            +I+++G    GKT ++ +   G           + F ++TVE   + +   +WD  GQ+
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R + + Y+++   LI   D    +      + L  +      +   +LV         
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181
                  + +        +  Y   T A   + + +    L+  + S+A
Sbjct: 126 REV----SQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 170

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (173), Expect = 1e-16
 Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-----IGFNVETVEYKNISFTVWDVGGQD 72
            + +++G    GK+ +L++    + +   P       G  +  V  + I   +WD  GQ+
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + R + R Y++   G + V D   R                    + V+++  NK DL  
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRST-YNHLSSWLTDARNLTNPNTVIILIGNKADLEA 123

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
             +   +T +       +         A +GE + +     +  I
Sbjct: 124 QRD---VTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 1e-14
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 9/168 (5%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-----IVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
            + +++G    GK+ +L +           +T     G  +  ++ K I   +WD  GQ+
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
             R + R Y++   G + V D   R+              +    + V+++  NK DL +
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRET-FNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 122

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
             +      + G    R+       T A +   + E     +  I  K
Sbjct: 123 RRDVKR---EEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 167

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 8e-14
 Identities = 23/166 (13%), Positives = 57/166 (34%), Gaps = 7/166 (4%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQ 71
           +E +++++G    GK+ +  +   G  +        +       V+       + D  G 
Sbjct: 2   REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           ++   +   Y +N QG I V    ++    + +    +++         +++  NK DL 
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           +      ++   G     +       T A S   + E    +   +
Sbjct: 122 SERE---VSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 3e-13
 Identities = 22/166 (13%), Positives = 58/166 (34%), Gaps = 9/166 (5%)

Query: 17  EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-----VEYKNISFTVWDVGGQ 71
           + +++++G  A GK++++ +   G+      +            ++   + F +WD  GQ
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           ++   L   Y++  Q  I V D  + +    A++ +  +  +      + L         
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-- 123

Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
              N   +  +               T A +   + E    ++  +
Sbjct: 124 --ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 2e-12
 Identities = 22/171 (12%), Positives = 57/171 (33%), Gaps = 15/171 (8%)

Query: 19  RILMVGLDAAGKTTILYKLKLGE-----IVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
           +++++G    GK++++ +    +       T           V+   ++  +WD  GQ++
Sbjct: 8   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67

Query: 74  IRPLWRHYFQNTQGLI---FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
            R L   +++ +   +    V DS     +   + E     +  E      ++  NK D+
Sbjct: 68  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127

Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQ--STCATSGEGLYEGLDWLSNNIAS 179
                + E           + +       T A     +    +     + +
Sbjct: 128 SERQVSTEEAQA-----WCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.6 bits (143), Expect = 3e-12
 Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 9/171 (5%)

Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEYKNISFTVWDV 68
           A +E+++ ++G    GK++I+++         I      +        + +   F +WD 
Sbjct: 1   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60

Query: 69  GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
            G ++ R L   Y++ +   I V D    +     ++ +  +         V +      
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120

Query: 129 DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
                                  H     T A +   + E    +S  I S
Sbjct: 121 LTDVREVMERDAKDYA----DSIHAIFVETSAKNAININELFIEISRRIPS 167

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 4e-12
 Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 9/165 (5%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQD 72
            +++++G    GKT+++ +    +      T        +      K ++  +WD  GQ+
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           +   L   Y++++ G I V D  D D   + ++ +  +         + +V         
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
              + +  +                T A   +G+ E    L   +
Sbjct: 124 RHVSIQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 57.6 bits (138), Expect = 2e-11
 Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKI 74
           +++MVG    GK+ +  +    E V        +       ++ + +   + D  GQ+  
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
             +  +YF++ +G + V    + +      D   ++L   E  +   L+  NK DL +  
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125

Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
             +    K   +   Q +     T A +   + +    L   I ++
Sbjct: 126 QVSVEEAK---NRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.4 bits (137), Expect = 2e-11
 Identities = 24/165 (14%), Positives = 58/165 (35%), Gaps = 5/165 (3%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG----FNVETVEYKNISFTVWDVGGQD 72
           ++++++G    GKT+++ +    +       TIG         V+ + ++  +WD  GQ+
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           + + L   +++     + V D    +            L +   RD     F    +  +
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
             N    T +       + +     T A     + +    ++ N 
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.8 bits (133), Expect = 6e-11
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGG 70
           +  +I+++G    GKT + Y+   G     T  TIG +       ++ + I   +WD  G
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60

Query: 71  QDKIRPLWR-HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           Q++ R     HY++N   ++FV D  +          +          D   ++  NK D
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120

Query: 130 LPNAMN 135
           L +A+ 
Sbjct: 121 LRSAIQ 126

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 3e-10
 Identities = 26/165 (15%), Positives = 61/165 (36%), Gaps = 10/165 (6%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQD 72
           +++++VG  A GK++++ +   G                    V  +++   +WD  GQ+
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           +   + + Y++  Q  + V  + DR+          +++ E    D    +  NK DL +
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQNKIDLLD 120

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
                 I ++      ++       T       + E   +L+   
Sbjct: 121 DSC---IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 4e-10
 Identities = 27/164 (16%), Positives = 66/164 (40%), Gaps = 9/164 (5%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
           +++ +G  + GKT+++ +            T           +E + I   +WD  GQ++
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
            R L   Y +++   + V D  + +   +    +  +  E      ++LV  NK DL + 
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV-GNKTDLADK 120

Query: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
               +++ + G    ++ +     T A +G  + +    ++  +
Sbjct: 121 R---QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 6e-09
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYK----NISFTVWDVGGQDK 73
           ++++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+K
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
              L   Y+   Q    ++  +   RV                 +  +++  NK D+ + 
Sbjct: 65  FGGLRDGYYIQAQ--CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 122

Query: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
              A+          R+++       A S     +   WL+  +
Sbjct: 123 KVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (120), Expect = 6e-09
 Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 10/169 (5%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG-----FNVETVEYKNISFTVWDVGGQ 71
           ++++++G    GKT+++++    +       TIG       V     K  +  VWD  GQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE---ARDELHRMLNEDELRDAVLLVFANKQ 128
           ++ + L   +++     + V D  +          RDE     N +       ++  NK 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 129 DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           D   +           L            T A +   +    + ++ + 
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSA 170

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 1e-08
 Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 8/166 (4%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG---FNVETVEYKNISFTVWDVGGQ 71
            E ++++VG    GK+ +  +L     V    PTI         ++ +     + D  GQ
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           ++   +   Y +  +G + V   N+     +      ++    +  D  +++  NK DL 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121

Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
                +         +      YI+ T A + +G+ +    L   I
Sbjct: 122 ARTVESRQAQD---LARSYGIPYIE-TSAKTRQGVEDAFYTLVREI 163

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 1e-08
 Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 7/167 (4%)

Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGG 70
            +  ++++VG    GK+ +  +      V+       +    + +V+       + D  G
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63

Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
           Q++   +   Y +   G + V   NDR    E      ++L   +  D  +++  NK DL
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123

Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
            +     ++            H       A     + E  + L   +
Sbjct: 124 ESQR---QVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 15/178 (8%)

Query: 14  AKKEMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVG 69
           + + ++ ++VG  A GKT +L            + T+         V+ K ++  +WD  
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 70  GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
           GQ+    L    +  T   +              R + +  +      +  +++   K D
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLD 120

Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQS----------TCATSGEGLYEGLDWLSNNI 177
           L +  +  E   +  L  +        +            A +  GL    D     +
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 5e-08
 Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 6/166 (3%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE---TVEYKNISFTVWDVGGQ 71
           +E +++++G    GK+ +  +   G  +    PTI  +      V+ +     + D  G 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           ++   +   Y +N QG   V     +    + +D   ++L   +  D  +++  NK DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
           +     +   +          +    + A S   + E    L   I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFL--ESSAKSKINVNEIFYDLVRQI 165

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 1e-07
 Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 17/173 (9%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY---KNISFTVWDVGGQ 71
           + ++ ++VG  A GKT +L      +     +PT+  N         +  +  ++D  GQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           +    L    +  T   +              +++    +          L+   + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLR 120

Query: 132 NAMNAAEITDKLGLHSLRQ-----------RHWYIQSTCATSGEGLYEGLDWL 173
           +  +  E   K     +                Y++   A + +GL    D  
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVE-CSALTQKGLKNVFDEA 172

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 2e-07
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 15/170 (8%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN---VETVEYKNISFTVWDVGGQDK 73
            ++++VG  A GKT +L      +     +PT+  N      V+ K +   +WD  G + 
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
              L    + +T  ++     +  D +    ++    +      +  +++  NK+DL N 
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 121

Query: 134 MNAAEITDKLGLHSLRQRHWYIQS----------TCATSGEGLYEGLDWL 173
            +      K+    ++       +            A + +G+ E  +  
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 6/165 (3%)

Query: 17  EMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQD 72
             ++++VG    GK+ +  +      V     TI         ++ +     V D  GQ+
Sbjct: 4   TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
           +   +   Y +   G + V    D+            +L   +     +++ ANK DL  
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM- 122

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
                   D+    + +    YI+++       + +    L   I
Sbjct: 123 -HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
            +I++VG    GKT +L+           V T+         ++ + I  ++WD  G   
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
              +    + ++  ++   D +  + +     +    + E      +LLV   K DL  
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV-GCKSDLRT 120

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 3e-06
 Identities = 21/166 (12%), Positives = 57/166 (34%), Gaps = 8/166 (4%)

Query: 17  EMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
           + R+ + G    GK++++ +   G      + T+      V + +    +  + D  G  
Sbjct: 2   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML-NEDELRDAVLLVFANKQDLP 131
           +   + R         I V     R  + E +    ++   + ++    +++  NK    
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK--CD 119

Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
            + +    + +    +   +  +++ T A     + E    L N  
Sbjct: 120 ESPSREVQSSEAEALARTWKCAFME-TSAKLNHNVKELFQELLNLE 164

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 4e-06
 Identities = 14/162 (8%), Positives = 35/162 (21%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
           ++L++G    GK+ +       E        G   +     +       V    +     
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62

Query: 79  RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
                        V                  +     R    +      +  + + + E
Sbjct: 63  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 122

Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
           ++   G             T A     +    + +   I  +
Sbjct: 123 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 7/166 (4%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQ 71
           K  +I ++G  + GK+++  +   G+ V +    I      + TV  +     + D  GQ
Sbjct: 3   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62

Query: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
           D+     + Y  +  G I V            +    ++L+        +++  NK+DL 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
                    ++    +      +++ + A   +   +    +    
Sbjct: 123 MERV--ISYEEGKALAESWNAAFLE-SSAKENQTAVDVFRRIILEA 165

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 7/167 (4%)

Query: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGG 70
           +++ R+++VG    GK+ +  +      VT       +       ++ +     + D  G
Sbjct: 3   QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAG 62

Query: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
           Q++   +   Y +  +G + V    DR    E      ++L   +  +  +++  NK DL
Sbjct: 63  QEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL 122

Query: 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
            +     +   +      RQ         A     + +    L   I
Sbjct: 123 DHQRQVTQEEGQ---QLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 40.0 bits (92), Expect = 3e-05
 Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 22/177 (12%)

Query: 19  RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQ 71
            + +VG   AGK+++L  +             T  P +G        +   FT+ D+ G 
Sbjct: 3   DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV---EVSEEERFTLADIPGI 59

Query: 72  DKIRPLWRHYFQNT-------QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
            +     +             + L++V+D+ D                +  L     LV 
Sbjct: 60  IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA 119

Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181
            NK DL        + D L      +    +    A +G GL    + L   + S  
Sbjct: 120 LNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAGLPALKEALHALVRSTP 171

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 15/174 (8%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
           ++ ++VG  A GKT +L            V T+        TV  K     ++D  GQ+ 
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
              L    +  T   +      +       ++E    L E    +   L+   + DL + 
Sbjct: 70  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDD 128

Query: 134 MNAAEITDKLGLH--------SLRQRHWYIQ--STCATSGEGLYEGLDWLSNNI 177
                  + +            L +           A + +GL    D     I
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 8/153 (5%)

Query: 17  EMRILMVGLDAAGKTTILYKLKLG----EIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
           E+++ + G    GK+ ++ +        E   T+ +   +  T++ + +S  + D  GQ+
Sbjct: 2   EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61

Query: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
                   + +  +G + V D  DR    E     + +    + ++  L++  NK DL +
Sbjct: 62  DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165
           +     ++ + G     +         A +GEG
Sbjct: 121 SRQ---VSTEEGEKLATELACAFYECSACTGEG 150

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 30/143 (20%), Positives = 43/143 (30%), Gaps = 13/143 (9%)

Query: 20  ILMVGLDAAGKTTILYKL-----KLGEIVTTIPTIGFNVETVEY--------KNISFTVW 66
             +VGL  +GKTT   KL       G     +          E               V 
Sbjct: 13  WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM 72

Query: 67  DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
           D    + IR       +     + +VD+  R ++ E        L E    D VLLV   
Sbjct: 73  DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA 132

Query: 127 KQDLPNAMNAAEITDKLGLHSLR 149
                    A    +K+G+  L 
Sbjct: 133 MTGQEALSVARAFDEKVGVTGLV 155

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.5 bits (83), Expect = 5e-04
 Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 12/162 (7%)

Query: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
           +R+++VG    GK+T+L +L   +        G   +     +  + I F + D  G   
Sbjct: 1   LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF--ANKQDLP 131
                       + L  +  ++    V++A   L     +   R          NK D+ 
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
             +N  EI +KLG         ++    A  GEGL +  + +
Sbjct: 121 EKINEEEIKNKLG------TDRHMVKISALKGEGLEKLEESI 156

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 24/181 (13%), Positives = 51/181 (28%), Gaps = 25/181 (13%)

Query: 20  ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR---- 75
           I+  G    GK+T++Y+L  G+ V      G   + +E +  +  + D+ G   +     
Sbjct: 3   IIFAGRSNVGKSTLIYRL-TGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61

Query: 76  -------------PLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL----HRMLNEDELRD 118
                                +   L+    +         +                 D
Sbjct: 62  EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121

Query: 119 AVLLVFANKQDLPNAMNAA--EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
              +V  NK D    +      + +K  +  L +         A  G+ +    + +   
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLSEIDKVFIPISAKFGDNIERLKNRIFEV 180

Query: 177 I 177
           I
Sbjct: 181 I 181

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 16/162 (9%), Positives = 50/162 (30%)

Query: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
            E+R+ ++G   +GK++++++   G       T     +     +    +  +  +    
Sbjct: 4   PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 76  PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
                 + +    +F ++  +  + V         L  +      L +   +  +  +  
Sbjct: 64  DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSP 123

Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
                 +        +      TCAT G  +      ++  +
Sbjct: 124 RVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.98
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.98
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.98
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.98
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.98
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.97
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.97
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.97
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.96
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.95
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.94
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.93
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.92
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.91
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.91
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.91
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.9
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.9
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.89
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.88
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.85
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.83
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.82
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.81
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.81
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.78
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.78
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.78
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.73
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.73
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.72
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.61
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.59
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.56
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.55
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.53
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.44
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.1
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.07
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.06
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.05
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.04
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.86
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.47
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.43
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.42
d1okkd2	207	GTPase domain of the signal recognition particle r	98.36
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.32
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.22
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.18
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.15
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.13
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.12
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.01
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.01
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.81
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.77
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.75
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.7
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.65
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.64
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.6
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.6
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.6
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.59
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.57
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.57
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.56
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.56
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.56
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.54
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.49
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.47
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.45
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.43
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.41
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.39
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.36
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.35
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.35
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.34
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.31
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.28
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.28
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.25
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.24
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.24
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.24
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.22
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.22
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.21
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.21
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.2
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.2
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.2
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.2
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.18
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.17
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.16
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.16
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.14
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.14
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.14
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.14
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.11
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.1
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.1
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.09
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.09
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.09
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.09
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.09
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.08
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.04
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.04
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.02
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.02
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.01
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.99
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.98
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.97
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.97
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.96
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.96
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.94
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.94
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.94
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.94
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.93
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.93
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.92
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.91
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.89
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.85
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.82
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.79
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.7
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.63
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.62
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.59
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.56
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.54
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.5
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.42
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.41
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.4
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.33
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.28
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.25
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.25
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.13
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.05
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.05
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.03
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.02
d1tuea_	205	Replication protein E1 helicase domain {Human papi	96.0
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.95
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.91
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.91
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.89
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.88
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.83
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.77
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.77
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.77
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.74
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.72
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.69
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.64
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.63
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.63
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.62
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.55
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.48
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.44
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.33
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.24
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.24
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.23
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.05
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.02
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.0
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.86
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.85
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.83
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.8
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.78
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.73
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.65
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.56
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.48
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.44
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.41
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.19
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.12
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.95
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.94
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.82
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.91
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	92.82
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	92.78
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	92.75
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.54
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.51
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.01
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	90.76
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.16
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.02
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	89.77
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.76
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	88.14
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.0
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	87.54
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	86.27
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.11
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	85.83
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	85.15
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.79
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	84.0
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	83.75
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	83.75
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.74
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.86
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	82.15
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	81.61
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.14
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	80.13

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=100.00  E-value=7.1e-39  Score=219.86  Aligned_cols=179  Identities=56%  Similarity=0.992  Sum_probs=161.0

Q ss_pred             chhHHHHHHhh-hcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhh
Q 030192            2 GLTFTKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH   80 (181)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (181)
                      |..|+.+++++ ..++.+||+++|++|||||||++++.++.+....||.+.........++.+.+||++|++.+...+..
T Consensus         1 ~~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (182)
T d1moza_           1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC   80 (182)
T ss_dssp             CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGG
T ss_pred             ChhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHh
Confidence            56788888876 45789999999999999999999999998888889999999899999999999999999999999999


Q ss_pred             ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      ++..+|++++|+|++++.++.....++...+......++|+++++||+|+.+....+++.+.+....+...++++++|||
T Consensus        81 ~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA  160 (182)
T d1moza_          81 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA  160 (182)
T ss_dssp             TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred             hhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence            99999999999999999999999999999888777778999999999999888888899999888888888899999999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030192          161 TSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~~  180 (181)
                      ++|+|++++|++|.+.+.++
T Consensus       161 ~~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         161 IKGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             GGTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHc
Confidence            99999999999999988764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=1.1e-37  Score=210.68  Aligned_cols=165  Identities=49%  Similarity=0.905  Sum_probs=152.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (181)
                      +.+||+++|++|||||||+++|.+..+.+..||.+.....+...++.+.+||+||++.++..+..+++.++++++|+|++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   80 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA   80 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence            46899999999999999999999998888889999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192           96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                      +..++.....+|...+.+....++|+++|+||+|+.+....++....+....++...+++++|||++|.|++++|++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  160 (165)
T d1ksha_          81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD  160 (165)
T ss_dssp             CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999888777778999999999999988888888888777777777889999999999999999999999


Q ss_pred             Hhhhc
Q 030192          176 NIASK  180 (181)
Q Consensus       176 ~~~~~  180 (181)
                      .+.+|
T Consensus       161 ~i~~r  165 (165)
T d1ksha_         161 DISSR  165 (165)
T ss_dssp             HHHTC
T ss_pred             HHHcC
Confidence            98875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=100.00  E-value=9.8e-38  Score=212.51  Aligned_cols=170  Identities=71%  Similarity=1.255  Sum_probs=156.9

Q ss_pred             HHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccE
Q 030192            8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus         8 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .+++++.++.+||+++|++|||||||++++.++.+....+|.+..........+.+.+||+||+..++..+..+++.+++
T Consensus         3 ~~~~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   82 (173)
T d1e0sa_           3 VLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQG   82 (173)
T ss_dssp             HHHHHHTTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCE
T ss_pred             hhhhhhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccce
Confidence            34666778899999999999999999999999988888889999888888999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +++|+|+++.+++.....+|...+......+.|+++++||+|+.+.....++...+++..++..++++++|||++|+||+
T Consensus        83 ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          83 LIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            99999999999999999999998887666789999999999999888888899988888888889999999999999999


Q ss_pred             HHHHHHHHHh
Q 030192          168 EGLDWLSNNI  177 (181)
Q Consensus       168 ~~~~~i~~~~  177 (181)
                      ++|++|.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998865

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=100.00  E-value=2.9e-37  Score=210.64  Aligned_cols=166  Identities=48%  Similarity=0.846  Sum_probs=152.1

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .++++.+||+++|++|||||||++++.++.+....++.++....+...++.+.+||++|++.++..+..+++.+|++++|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   90 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEe
Confidence            45578899999999999999999999999988778888888889999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      ||++++.++.....++..........++|+++++||+|+.+.....++.+.+....++...+++++|||++|.|++++|+
T Consensus        91 ~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~  170 (176)
T d1fzqa_          91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN  170 (176)
T ss_dssp             EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred             eccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999988877777899999999999998888888888887777777889999999999999999999


Q ss_pred             HHHHHh
Q 030192          172 WLSNNI  177 (181)
Q Consensus       172 ~i~~~~  177 (181)
                      ++++.+
T Consensus       171 ~l~~~i  176 (176)
T d1fzqa_         171 WVCKNV  176 (176)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            998754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=204.49  Aligned_cols=161  Identities=30%  Similarity=0.680  Sum_probs=149.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (181)
                      .+||+++|++|||||||+++|.++.+. ...||.+.....+...++.+.+||+||++.+...+..++..++++++|||++
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   81 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccc
Confidence            579999999999999999999998876 4578999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192           96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                      +++++.....++..++.+....++|+++|+||.|+.+....+++.+.+....++..+++++++||++|.|++++|++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~  161 (164)
T d1zd9a1          82 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ  161 (164)
T ss_dssp             CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHH
Confidence            99999999999999998877788999999999999888788888888888888888999999999999999999999987


Q ss_pred             Hh
Q 030192          176 NI  177 (181)
Q Consensus       176 ~~  177 (181)
                      .+
T Consensus       162 ~~  163 (164)
T d1zd9a1         162 HS  163 (164)
T ss_dssp             TC
T ss_pred             cc
Confidence            54

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=200.27  Aligned_cols=158  Identities=16%  Similarity=0.168  Sum_probs=114.2

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   94 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (181)
                      +||+++|++|+|||||++++.+..+....++.+..+. .+..  ..+.+.+||++|++++...+..+++.+|++++|||+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~   81 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV   81 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence            6899999999999999999998877655565554442 3333  457899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192           95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW  172 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~  172 (181)
                      ++++++..+..|+..+.......++|+++|+||+|+.+...  ..+..+     +.+..++++++|||++|.|++++|..
T Consensus        82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~Sak~~~~v~~~f~~  156 (168)
T d2gjsa1          82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA-----CAVVFDCKFIETSAALHHNVQALFEG  156 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred             cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHH-----HHHhcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999998887665556789999999999876432  222211     12334557999999999999999999


Q ss_pred             HHHHhhhc
Q 030192          173 LSNNIASK  180 (181)
Q Consensus       173 i~~~~~~~  180 (181)
                      +++.+..+
T Consensus       157 l~~~i~~~  164 (168)
T d2gjsa1         157 VVRQIRLR  164 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=100.00  E-value=2.9e-33  Score=190.60  Aligned_cols=176  Identities=48%  Similarity=0.898  Sum_probs=155.0

Q ss_pred             chhHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhc
Q 030192            2 GLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY   81 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   81 (181)
                      |-+|+++. .+..++.+||+++|.+|||||||++++.++++....++.+.........+.++.+||+++.+.....+..+
T Consensus         1 ~~~~~~~~-~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   79 (177)
T d1zj6a1           1 GILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY   79 (177)
T ss_dssp             CHHHHHHH-HHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHH
T ss_pred             ChhHHHHH-HHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhh
Confidence            45788887 67778999999999999999999999999998877777787778888899999999999999999999999


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcccc
Q 030192           82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT  161 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  161 (181)
                      +..++++++|+|.++.+++.....++..........+.|+++|+||+|+......+++.+.+....++..+++++++||+
T Consensus        80 ~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~  159 (177)
T d1zj6a1          80 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL  159 (177)
T ss_dssp             HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             hccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCC
Confidence            99999999999999999998888887777777666789999999999998888888888888888788888999999999


Q ss_pred             CCCChHHHHHHHHHHhh
Q 030192          162 SGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~~  178 (181)
                      +|+|+++++++|.+.+.
T Consensus       160 tg~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         160 TGEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             TTBTHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHhC
Confidence            99999999999998763

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=200.26  Aligned_cols=162  Identities=18%  Similarity=0.260  Sum_probs=129.5

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE-EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (181)
                      ++.+.+||+++|++|||||||+++|.++.+.+. .|+..... ..+..  ..+.+.+||++|++++...+..+++++|++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            457889999999999999999999999888754 44433222 22333  457899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      ++|||+++++++..+..|+..+.......+.|+++|+||+|+.+...  .++..     .+.+..++++++|||++|.||
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~e~Sak~g~gv  156 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS-----AFGASHHVAYFEASAKLRLNV  156 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH-----HHHHHTTCEEEECBTTTTBSH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhh-----HHHHhcCCEEEEEeCCCCcCH
Confidence            99999999999999999988887655556899999999999875422  22211     112223457999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030192          167 YEGLDWLSNNIAS  179 (181)
Q Consensus       167 ~~~~~~i~~~~~~  179 (181)
                      +++|..+++.+.+
T Consensus       157 ~e~f~~l~~~i~k  169 (173)
T d2fn4a1         157 DEAFEQLVRAVRK  169 (173)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998865

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.2e-34  Score=194.27  Aligned_cols=158  Identities=20%  Similarity=0.373  Sum_probs=126.5

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+||+++|++|||||||+++|.++.+.. ..++.+.+..  .+..  ..+.+++|||||++++...+..+++.+|++|+|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            4799999999999999999999888764 4556655443  3333  346899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      ||+++++++.....|+...... .....|+++++||+|+.+...  .++...     .++..++++++|||++|.|++++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~-----~~~~~~~~~~e~Sak~g~gv~e~  158 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQ-----LADHLGFEFFEASAKDNINVKQT  158 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhHH-----HHHHcCCEEEEecCCCCcCHHHH
Confidence            9999999999988888765443 336799999999999876432  222221     22334557999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030192          170 LDWLSNNIASK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |+++++.+.+|
T Consensus       159 f~~l~~~i~ek  169 (169)
T d3raba_         159 FERLVDVICEK  169 (169)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhhC
Confidence            99999999875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=100.00  E-value=3e-33  Score=187.37  Aligned_cols=160  Identities=93%  Similarity=1.424  Sum_probs=145.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   97 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (181)
                      +||+++|++|||||||++++.++++....++........+...+.+.+||++|...+...+..++..++++++++|.+++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence            58999999999999999999998887666666666677788999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192           98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      .++.....++...........+|+++++||.|+.+.....++........++..++++++|||++|.|++++|++|.++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_          81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            99999999999998887777899999999999998888888888777777788889999999999999999999998864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-34  Score=194.67  Aligned_cols=156  Identities=22%  Similarity=0.364  Sum_probs=126.4

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEEE----CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      ++||+++|++|+|||||+++|.++.+.. +.||.+..+.....    ..+.+.+||++|+..+...+..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            5799999999999999999999988764 46788876654433    568999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      ||++++++++++..|+....+..  .++|+++|+||+|+.+....++..     ..++..++++++|||++|.|++++|.
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~-----~~~~~~~~~~~e~Sak~~~~v~e~f~  155 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFL  155 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSH-----HHHSSCSSEEEEEBTTTTBTTTHHHH
T ss_pred             cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHH-----HHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999998876643  479999999999997754333211     22334566899999999999999999


Q ss_pred             HHHHHhhh
Q 030192          172 WLSNNIAS  179 (181)
Q Consensus       172 ~i~~~~~~  179 (181)
                      +|++.+..
T Consensus       156 ~l~~~l~~  163 (170)
T d1i2ma_         156 WLARKLIG  163 (170)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHcc
Confidence            99998865

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2.4e-35  Score=199.66  Aligned_cols=159  Identities=19%  Similarity=0.299  Sum_probs=126.9

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE-EEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      .+||+++|++|+|||||++++.++.+.. +.||.+..+.. +..  ..+.+.+||++|++++...+..+++++|++++||
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   83 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF   83 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEe
Confidence            4699999999999999999999988764 46777765432 223  4578999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |+++++++..+..|+..+.......++|+++|+||+|+.+..  ..++...     +++..++++++|||++|.|++++|
T Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~Sak~g~gv~e~f  158 (168)
T d1u8za_          84 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-----RADQWNVNYVETSAKTRANVDKVF  158 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH-----HHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             eccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHH-----HHHHcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999998888765555789999999999986542  2222222     223344579999999999999999


Q ss_pred             HHHHHHhhhc
Q 030192          171 DWLSNNIASK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      .++++.+.+|
T Consensus       159 ~~l~~~i~~r  168 (168)
T d1u8za_         159 FDLMREIRAR  168 (168)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHCc
Confidence            9999998775

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-34  Score=195.98  Aligned_cols=162  Identities=17%  Similarity=0.253  Sum_probs=125.8

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +.||+++|++|+|||||+++|.++.+.+ +.||.+....   .+....+.+.+||++|++.+...+..+++++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            4689999999999999999999998774 4566654432   12235578999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CcccCc-ceEEEEccccC
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL---------HSLRQR-HWYIQSTCATS  162 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~S~~~  162 (181)
                      |+++++++++...||...+.... +++|+++|+||+|+.+.....+.......         ..++.. ..+|++|||++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999998888777543 57999999999999764221111111110         111112 24799999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030192          163 GEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~~~  179 (181)
                      |.||+++|+.+++++++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=194.25  Aligned_cols=167  Identities=16%  Similarity=0.158  Sum_probs=128.5

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE-EE--ECCEEEEEEEcCCCCCcccchhhccccccE
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~-~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .+....+||+++|++|+|||||+++|.++.+.+ +.||.+..... +.  +..+.+.+||++|++.+...+..+++.+|+
T Consensus         4 ~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           4 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            355678999999999999999999999988764 45666543322 22  255789999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcccCc-ceEEEE
Q 030192           88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQR-HWYIQS  157 (181)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~  157 (181)
                      +++|||+++++++++...||...++... .++|+++|+||+|+.+............         ...+++. ..+|++
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~-~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E  162 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  162 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhcC-CCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999888888877543 5799999999999976321111110000         0011111 246899


Q ss_pred             ccccCCCChHHHHHHHHHHhhh
Q 030192          158 TCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       158 ~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      |||++|.||+++|+.++++++.
T Consensus       163 ~SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         163 CSALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             ecCCCCcCHHHHHHHHHHHHcC
Confidence            9999999999999999998754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-34  Score=191.79  Aligned_cols=159  Identities=18%  Similarity=0.269  Sum_probs=129.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEE---EEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +.+||+++|++|||||||+++|..+.+.+. .|+.+..+..   .....+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            568999999999999999999999998754 6666654432   223567899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      ||++++++++++..|+..+.+....++.|+++|+||+|+.....  .++......    +..++++++|||++|.||+++
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gv~e~  157 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI  157 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred             eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH----HhCCCEEEEEcCCCCcCHHHH
Confidence            99999999999999998887755556899999999999976432  222221111    113457999999999999999


Q ss_pred             HHHHHHHhh
Q 030192          170 LDWLSNNIA  178 (181)
Q Consensus       170 ~~~i~~~~~  178 (181)
                      |.++++.+.
T Consensus       158 F~~l~~~i~  166 (167)
T d1c1ya_         158 FYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=196.05  Aligned_cols=160  Identities=16%  Similarity=0.232  Sum_probs=126.6

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE-EEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      .+||+++|++|+|||||+++|.++.+.+ +.||.+..+.. ...  ..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~   81 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   81 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence            5799999999999999999999988764 46777755433 222  4468899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      |+++++++..+..|+..+... ....++|+++|+||+|+.+...  .++..+     +.+..++++++|||++|.||+++
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~-----~~~~~~~~~~e~Sak~~~~v~e~  156 (171)
T d2erxa1          82 SITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-----LARTWKCAFMETSAKLNHNVKEL  156 (171)
T ss_dssp             ETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTBSHHHH
T ss_pred             ecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHH-----HHHHcCCeEEEEcCCCCcCHHHH
Confidence            999999999999988776542 2335789999999999865432  222221     12234457999999999999999


Q ss_pred             HHHHHHHhhhcC
Q 030192          170 LDWLSNNIASKA  181 (181)
Q Consensus       170 ~~~i~~~~~~~~  181 (181)
                      |..+++.+.+++
T Consensus       157 f~~l~~~~~~~~  168 (171)
T d2erxa1         157 FQELLNLEKRRT  168 (171)
T ss_dssp             HHHHHHTCCSSC
T ss_pred             HHHHHHHHHHhh
Confidence            999999887764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-34  Score=191.67  Aligned_cols=159  Identities=16%  Similarity=0.174  Sum_probs=129.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      .+.+||+++|++|+|||||+++|.++.+.. +.||.+..+. .+..  ..+.+.+||++|.+++..++..+++.+|++++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            356899999999999999999999888764 4677776643 2333  45788999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |||+++++++..+..|+..+.......++|+++|+||+|+.....  .++..+     +.+..+.+|++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~-----~a~~~~~~~~e~Sak~~~~v~~  156 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKA-----LAESWNAAFLESSAKENQTAVD  156 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECCTTCHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHH-----HHHHcCCEEEEEecCCCCCHHH
Confidence            999999999999999998887665556899999999999865432  222211     1223445789999999999999


Q ss_pred             HHHHHHHHhh
Q 030192          169 GLDWLSNNIA  178 (181)
Q Consensus       169 ~~~~i~~~~~  178 (181)
                      +|..+++.+.
T Consensus       157 ~f~~li~~~~  166 (167)
T d1xtqa1         157 VFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998775

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-34  Score=190.99  Aligned_cols=155  Identities=17%  Similarity=0.358  Sum_probs=125.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEE----ECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|||||||+++|.++++.. +.|+.+.......    ...+.+.+||++|++++...+..+++.+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            589999999999999999999988774 4666665554332    24578999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |++++.++..+..|+........ .++|+++|+||+|+.+..  ..++...     +.+..++++++|||++|.||+++|
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~SAk~g~~v~e~f  154 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQLF  154 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcC-CCceEEEEecccchhhhhhhhHHHHHH-----HHHHcCCEEEEecCCCCcCHHHHH
Confidence            99999999999999988765433 579999999999987532  2222211     122334579999999999999999


Q ss_pred             HHHHHHhh
Q 030192          171 DWLSNNIA  178 (181)
Q Consensus       171 ~~i~~~~~  178 (181)
                      .+|+++|.
T Consensus       155 ~~i~~~l~  162 (164)
T d1yzqa1         155 RRVAAALP  162 (164)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhhC
Confidence            99999875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.6e-34  Score=193.10  Aligned_cols=159  Identities=17%  Similarity=0.204  Sum_probs=128.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      .+||+++|++|+|||||++++.++.+.. ..|+.+..+. .+..  ..+.+.+||++|++++...+..+++.+|++++||
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~   83 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVY   83 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEec
Confidence            5899999999999999999999988764 4566554432 2233  4578999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCC-ChHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGE-GLYEG  169 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-gv~~~  169 (181)
                      |+++++++.++..|+..+.+.....+.|+++++||+|+.+...  .++..+     +++..++++++|||+++. ||+++
T Consensus        84 d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~-----~~~~~~~~~~e~Sak~~~~nV~~~  158 (169)
T d1x1ra1          84 SVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE-----MATKYNIPYIETSAKDPPLNVDKT  158 (169)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH-----HHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred             ccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHH-----HHHHcCCEEEEEcCCCCCcCHHHH
Confidence            9999999999999998887765556899999999999876532  222221     122234468999999875 99999


Q ss_pred             HHHHHHHhhhc
Q 030192          170 LDWLSNNIASK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |..+++.+.++
T Consensus       159 F~~l~~~i~~~  169 (169)
T d1x1ra1         159 FHDLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-34  Score=194.29  Aligned_cols=156  Identities=18%  Similarity=0.320  Sum_probs=125.6

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEE--EE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+||+++|++|+|||||+++|.++.+.+ +.||.+......  ..  ..+.+.+||++|+.++...+..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            4799999999999999999999888764 467777554433  33  357899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      ||++++++++.+..|+..+....  .++|+++|+||+|+.+...  .++...     +++..+++++++||++|.|++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~Sak~g~~v~e~  154 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEG-----LAKRLKLRFYRTSVKEDLNVSEV  154 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHH-----HHHHHTCEEEECBTTTTBSSHHH
T ss_pred             EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHH-----HHHHcCCEEEEeccCCCcCHHHH
Confidence            99999999999988887765432  4799999999999875432  222221     22334567999999999999999


Q ss_pred             HHHHHHHhhh
Q 030192          170 LDWLSNNIAS  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |+.+++.+.+
T Consensus       155 f~~l~~~~lq  164 (164)
T d1z2aa1         155 FKYLAEKHLQ  164 (164)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999988753

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-34  Score=192.26  Aligned_cols=157  Identities=20%  Similarity=0.337  Sum_probs=119.8

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEE--E--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE--Y--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~--~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+||+++|++|+|||||+++|.++.+.+ ..||.+.......  .  ..+.+.+||++|+.++...+..+++++|++++|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            4799999999999999999999988874 4667665554322  2  358999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      ||+++++++..+..|+........ ...|+++++||+|+.+...  .++..+     ++++.+.++++|||++|.||+++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~~ilvgnK~Dl~~~~~v~~~e~~~-----~a~~~~~~~~e~Sak~~~~v~e~  156 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDLEKERHVSIQEAES-----YAESVGAKHYHTSAKQNKGIEEL  156 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHG-GGSEEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EeCCchhHHHhhhhhhhhcccccc-cccceeeeccccccccccccchHHHHH-----HHHHcCCeEEEEecCCCcCHHHH
Confidence            999999999999998876654322 5689999999999876432  222221     22334557899999999999999


Q ss_pred             HHHHHHHhhh
Q 030192          170 LDWLSNNIAS  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |.++++.+.+
T Consensus       157 F~~l~~~i~~  166 (167)
T d1z08a1         157 FLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.3e-34  Score=192.67  Aligned_cols=162  Identities=20%  Similarity=0.404  Sum_probs=128.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+||+++|++|+|||||+++|.++.+.. +.||.+..+.  .+..  ..+.+.+||++|++++...+..+++.+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            5899999999999999999999998774 4677776543  3444  447899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      ||++++.++.....|+........ ...|+++++||+|+.+.....++.......+++..+++|++|||++|.||+++|.
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccccc-cccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            999999999999998876655433 5789999999999865322111111111222334566899999999999999999


Q ss_pred             HHHHHhhh
Q 030192          172 WLSNNIAS  179 (181)
Q Consensus       172 ~i~~~~~~  179 (181)
                      .|++.|.-
T Consensus       162 ~i~~~i~~  169 (170)
T d1ek0a_         162 GIGEKIPL  169 (170)
T ss_dssp             HHHTTSCC
T ss_pred             HHHHHhcc
Confidence            99987754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-34  Score=192.81  Aligned_cols=158  Identities=20%  Similarity=0.348  Sum_probs=125.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+||+++|++|||||||+++|.++.+.. ..++.+..+  ..+..  ..+++.+|||||++++...+..++++++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            4799999999999999999999988764 355555443  33443  457899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      +|++++.++.....|+..+..... ..+|+++|+||+|+.+...  .++...     +.+..++++++|||++|.||+++
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ilvgnK~D~~~~~~v~~~~~~~-----~~~~~~~~~~~~SAktg~gV~e~  158 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDLAERREVSQQRAEE-----FSEAQDMYYLETSAKESDNVEKL  158 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCSSCHHHHHH-----HHHHHTCCEEECCTTTCTTHHHH
T ss_pred             eecccchhhhhhhhhhhhhccccc-ccccEEEEEeecccccccchhhhHHHH-----HHHhCCCEEEEEccCCCCCHHHH
Confidence            999999999999999887765433 5689999999999875432  222221     12233446899999999999999


Q ss_pred             HHHHHHHhhhc
Q 030192          170 LDWLSNNIASK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |.++++.+.++
T Consensus       159 f~~l~~~l~~~  169 (171)
T d2ew1a1         159 FLDLACRLISE  169 (171)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999887653

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-33  Score=191.99  Aligned_cols=164  Identities=15%  Similarity=0.178  Sum_probs=126.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE-EE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~-~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +.+||+++|++|+|||||+++|.++.+.. +.||.+..... ..  +..+.+.+||++|++++...+..+++.+|++++|
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            46899999999999999999999998764 46777654422 22  2456899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhC--------CCcccC-cceEEEEcccc
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLG--------LHSLRQ-RHWYIQSTCAT  161 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~--------~~~~~~-~~~~~~~~S~~  161 (181)
                      ||+++++|++++..||........ .+.|+++|+||+|+.+..... +......        ..+++. .+.+|++|||+
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcC-CCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            999999999999988888776543 579999999999986431110 0000000        001111 23468999999


Q ss_pred             CCCChHHHHHHHHHHhhhc
Q 030192          162 SGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~~~~  180 (181)
                      +|.||+++|+.++..+.++
T Consensus       161 ~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         161 TQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             TCTTHHHHHHHHHHHHTSC
T ss_pred             CCcCHHHHHHHHHHHHhcC
Confidence            9999999999999877654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-33  Score=189.91  Aligned_cols=158  Identities=22%  Similarity=0.352  Sum_probs=126.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--EEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      .+.+||+++|++|+|||||+++|.++.+.. +.||.+.....  ...  ....+.+||++|++++...+..+++.+|+++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            467899999999999999999999998774 45666655533  222  3457889999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||+++++++..+..|+....... ..+.|+++|+||+|+.+..  ..++..+     +++..+++|++|||++|.||+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~SAk~~~nV~  155 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAKD-----YADSIHAIFVETSAKNAININ  155 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECBTTTTBSHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhcc-CCcceEEEecccchhccccchhHHHHHH-----HHHHcCCEEEEEecCCCCCHH
Confidence            9999999999999999887665433 3679999999999996542  2222221     122345579999999999999


Q ss_pred             HHHHHHHHHhh
Q 030192          168 EGLDWLSNNIA  178 (181)
Q Consensus       168 ~~~~~i~~~~~  178 (181)
                      ++|..+++.+.
T Consensus       156 e~f~~l~~~i~  166 (167)
T d1z0ja1         156 ELFIEISRRIP  166 (167)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhCC
Confidence            99999999874

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-33  Score=190.56  Aligned_cols=158  Identities=20%  Similarity=0.351  Sum_probs=128.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEE--EE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      -.+||+++|++|+|||||+++|.++.+.. ..|+.+......  ..  ..+.+.+||++|++++...+..+++.+|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            35799999999999999999999988764 467777665443  22  35789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |+|.++++++.....|+..+..... .+.|+++|+||+|+.+...  .++...     ..+..++++++|||++|.||++
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~v~~e~~~~-----~~~~~~~~~~e~SAk~g~~V~e  158 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQS-----YADDNSLLFMETSAKTSMNVNE  158 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccC-CCceEEeecccccccccccccHHHHHH-----HHHhcCCEEEEeeCCCCCCHHH
Confidence            9999999999999998888765433 6799999999999876432  222211     1223456899999999999999


Q ss_pred             HHHHHHHHhhh
Q 030192          169 GLDWLSNNIAS  179 (181)
Q Consensus       169 ~~~~i~~~~~~  179 (181)
                      +|..|++.+.+
T Consensus       159 ~f~~l~~~i~~  169 (170)
T d1r2qa_         159 IFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHTSCC
T ss_pred             HHHHHHHHHhh
Confidence            99999998765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-33  Score=191.18  Aligned_cols=159  Identities=19%  Similarity=0.271  Sum_probs=124.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE-EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +.+||+++|++|||||||++++.++.+... .||.+... ..+..  ..+.+.+||++|.+++...+..+++.+|++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            458999999999999999999999887643 56655333 22333  457899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      ||+++++++..+..|+..+.........|+++|+||+|+.+..  ..++...     +++..++++++|||++|.|++++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~Sak~~~~i~e~  158 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQ-----LARQLKVTYMEASAKIRMNVDQA  158 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHH-----HHHHTTCEEEECBTTTTBSHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHH-----HHHHcCCEEEEEcCCCCcCHHHH
Confidence            9999999999999999887766555679999999999987642  2222221     22334557999999999999999


Q ss_pred             HHHHHHHhhh
Q 030192          170 LDWLSNNIAS  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |..+++.+.+
T Consensus       159 f~~l~~~i~k  168 (171)
T d2erya1         159 FHELVRVIRK  168 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-33  Score=187.67  Aligned_cols=161  Identities=17%  Similarity=0.267  Sum_probs=128.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEEE---EECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV---EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +.+||+++|++|||||||+++|.++.+... .|+.+..+...   .+..+.+.+||++|++.+...+..+++.++++++|
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            348999999999999999999999987754 66666544321   22467899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      +|++++.+++....|+..+.......++|+++|+||+|+.......+..+.    +.+..++++++|||++|.|++++|.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~e~Sak~g~gi~e~f~  157 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQD----LARSYGIPYIETSAKTRQGVEDAFY  157 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHH----HHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHH----HHHHhCCeEEEEcCCCCcCHHHHHH
Confidence            999999999999998887776555567999999999999764322221111    1223345699999999999999999


Q ss_pred             HHHHHhhhc
Q 030192          172 WLSNNIASK  180 (181)
Q Consensus       172 ~i~~~~~~~  180 (181)
                      ++++++.++
T Consensus       158 ~i~~~i~~~  166 (166)
T d1ctqa_         158 TLVREIRQH  166 (166)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhC
Confidence            999998753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=189.39  Aligned_cols=156  Identities=21%  Similarity=0.354  Sum_probs=123.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+||+++|++|+|||||++++.++.+... .++.+....  ....  ..+.+.+||++|++++...+..+++.+|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            47999999999999999999999887643 444444332  3333  456899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      ||+++++++.....|+...... .....|+++++||+|+.+...  .++...     .++..++++++|||++|.||+++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~Saktg~~v~e~  157 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQ-----FAEENGLLFLEASAKTGENVEDA  157 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHH-----HHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999888776543 336799999999999865432  222222     12233457999999999999999


Q ss_pred             HHHHHHHhh
Q 030192          170 LDWLSNNIA  178 (181)
Q Consensus       170 ~~~i~~~~~  178 (181)
                      |..+++.+.
T Consensus       158 f~~i~~~i~  166 (166)
T d1z0fa1         158 FLEAAKKIY  166 (166)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999998763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-33  Score=187.87  Aligned_cols=159  Identities=21%  Similarity=0.352  Sum_probs=126.8

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEE--EE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+||+++|++|||||||+++|..+.+.. ..|+.+......  ..  ....+.+||+||++++...+..+++.+|++++|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            4799999999999999999999888764 456666554432  22  456899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      +|.++++++..+..|+..+..... .++|+++++||+|+....... +...    ..+++.++++++|||++|.|++++|
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~----~~~~~~~~~~~e~Sak~~~gi~e~f  159 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEAS----RFAQENELMFLETSALTGENVEEAF  159 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHH----HHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EecccchhHHHHhhhhcccccccC-CceEEEEEEecccccchhchhhhHHH----HHHHhCCCEEEEeeCCCCcCHHHHH
Confidence            999999999999999888766443 579999999999986533221 1111    1222345679999999999999999


Q ss_pred             HHHHHHhhhc
Q 030192          171 DWLSNNIASK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      .++++++.++
T Consensus       160 ~~l~~~i~~~  169 (174)
T d2bmea1         160 VQCARKILNK  169 (174)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-33  Score=187.02  Aligned_cols=158  Identities=16%  Similarity=0.261  Sum_probs=126.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      +.+||+++|++|||||||++++.++.+.+. .|+.+.... .+..  ..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            578999999999999999999999887744 556553322 2222  457899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      ||+++++++.....|+..+.......++|+++|+||+|+.+...  .++...     ..+..++++++|||++|.|++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~Sak~g~~i~e~  156 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA-----LAEEWGCPFMETSAKSKTMVDEL  156 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH-----HHHHHTSCEEEECTTCHHHHHHH
T ss_pred             eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHH-----HHHHcCCeEEEECCCCCcCHHHH
Confidence            99999999999999998887655557899999999999875432  112111     11223446899999999999999


Q ss_pred             HHHHHHHhh
Q 030192          170 LDWLSNNIA  178 (181)
Q Consensus       170 ~~~i~~~~~  178 (181)
                      |..+++.+.
T Consensus       157 f~~i~~~i~  165 (167)
T d1kaoa_         157 FAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            999998763

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=190.42  Aligned_cols=158  Identities=17%  Similarity=0.236  Sum_probs=122.5

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEE-E--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV-E--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~-~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      .+||+++|++|+|||||++++.++.+. .+.||.+..+... .  +..+.+.+||++|++.+. ....+++.+|++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            479999999999999999999999876 4577877665432 2  244789999999998775 4566788999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCC-ChHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE-GLYEG  169 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-gv~~~  169 (181)
                      |+++++++..+..|+..........+.|+++|+||+|+.+..  ..++..+     +++..+++|++|||++|. ||+++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~-----~a~~~~~~~~e~Saktg~gnV~e~  155 (168)
T d2atva1          81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK-----LATELACAFYECSACTGEGNITEI  155 (168)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH-----HHHHHTSEEEECCTTTCTTCHHHH
T ss_pred             ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHH-----HHHHhCCeEEEEccccCCcCHHHH
Confidence            999999999998876554443444679999999999986542  2222221     122334579999999998 59999


Q ss_pred             HHHHHHHhhhc
Q 030192          170 LDWLSNNIASK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |..+++.+.++
T Consensus       156 F~~l~~~i~~~  166 (168)
T d2atva1         156 FYELCREVRRR  166 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-33  Score=190.53  Aligned_cols=157  Identities=22%  Similarity=0.353  Sum_probs=122.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|++|||||||++++.++++... .++.+....  ....  ..+.+.+||++|+..+...+..+++.+|++++||
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~   83 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   83 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEE
Confidence            7999999999999999999999887643 444333332  2222  4578999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |+++++++.....|+..+..... .++|+++|+||+|+....  ..++...     +++..+++++++||++|.||+++|
T Consensus        84 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~-----~a~~~~~~~~e~Sa~tg~~V~e~f  157 (173)
T d2a5ja1          84 DITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRDVKREEGEA-----FAREHGLIFMETSAKTACNVEEAF  157 (173)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             eecChHHHHhHHHHHHHHHHhCC-CCCeEEEEecCCchhhhhhhHHHHHHH-----HHHHcCCEEEEecCCCCCCHHHHH
Confidence            99999999999999988765433 579999999999986532  2211211     122334579999999999999999


Q ss_pred             HHHHHHhhhc
Q 030192          171 DWLSNNIASK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      ..+++.+.++
T Consensus       158 ~~i~~~i~~~  167 (173)
T d2a5ja1         158 INTAKEIYRK  167 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=194.36  Aligned_cols=159  Identities=21%  Similarity=0.423  Sum_probs=126.4

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE--EEEE------------CCEEEEEEEcCCCCCcccchhhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY------------KNISFTVWDVGGQDKIRPLWRHY   81 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~--~~~~------------~~~~~~i~D~~g~~~~~~~~~~~   81 (181)
                      .+||+++|++|+|||||+++|.++.+... .++.+..+.  .+..            ..+++.+||++|++++...+..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            47999999999999999999999887643 444443332  2221            23689999999999999999999


Q ss_pred             cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEcc
Q 030192           82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTC  159 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      ++++|++++|||++++.+++.+..|+..+........+|+++|+||+|+.+...  .++..     .++++.++++++||
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~-----~~~~~~~~~~~e~S  159 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAR-----ELADKYGIPYFETS  159 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHH-----HHHHHTTCCEEEEB
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHH-----HHHHHcCCEEEEEe
Confidence            999999999999999999999999888877766667799999999999976432  22221     11223345689999


Q ss_pred             ccCCCChHHHHHHHHHHhhhc
Q 030192          160 ATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       160 ~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      |++|.|++++|+++++.+.+|
T Consensus       160 ak~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         160 AATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-32  Score=187.83  Aligned_cols=164  Identities=17%  Similarity=0.214  Sum_probs=126.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      .+.+||+++|++|||||||+++|.++.+.. +.||.+.... .+..  ..+.+.+||++|++.+...+..+++.+|++++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            456999999999999999999999998764 4667664432 2322  45688999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCC--------cccC-cceEEEEccc
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLH--------SLRQ-RHWYIQSTCA  160 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~--------~~~~-~~~~~~~~S~  160 (181)
                      |||++++++++++..+|....... ..++|+++|+||+|+.+..... +........        .++. ...+|++|||
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            999999999999988777776643 3579999999999986542211 111111100        0111 2258999999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030192          161 TSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       161 ~~~~gv~~~~~~i~~~~~~  179 (181)
                      ++|.||+++|..+++.++.
T Consensus       162 k~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCcCHHHHHHHHHHHHcC
Confidence            9999999999999998764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=3.1e-32  Score=186.02  Aligned_cols=156  Identities=16%  Similarity=0.244  Sum_probs=124.4

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      ++||+++|++|||||||++++.++.+.. +.||.+.... .+.  ...+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            4799999999999999999999998874 4666553332 222  35678999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHh---HHHhhhCCCcccCcceEE
Q 030192           93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAA---EITDKLGLHSLRQRHWYI  155 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--------------~~~---~~~~~~~~~~~~~~~~~~  155 (181)
                      |+++++|++....+|...+.... .++|+++|+||+|+....              ..+   ++.+..+       ..+|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-------~~~y  153 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------AATY  153 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------CSEE
T ss_pred             ecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhC-------CCeE
Confidence            99999999999998888766433 579999999999986421              111   1222222       2379


Q ss_pred             EEccccCCC-ChHHHHHHHHHHhhhc
Q 030192          156 QSTCATSGE-GLYEGLDWLSNNIASK  180 (181)
Q Consensus       156 ~~~S~~~~~-gv~~~~~~i~~~~~~~  180 (181)
                      +||||++|. |++++|+.+.+.+.+|
T Consensus       154 ~E~SAk~~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         154 IECSALQSENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             EECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred             EEEeCCCCCcCHHHHHHHHHHHHhcC
Confidence            999999998 5999999999998875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=1.1e-32  Score=187.33  Aligned_cols=159  Identities=20%  Similarity=0.372  Sum_probs=99.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      .-+||+++|++|||||||+++|.++.+.. ..++.+...  ..+..+  .+.+.+||+||++.+...+..+++.+|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            34799999999999999999999888653 355655443  344443  4788999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      |||++++.++..+..|+..+... ...+.|+++|+||+|+......  ++...     .....+.++++|||++|.|+++
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~g~gv~e  158 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEK-----LALDYGIKFMETSAKANINVEN  158 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHH-----HHHHHTCEEEECCC---CCHHH
T ss_pred             EEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHH-----HHHhcCCEEEEEeCCCCCCHHH
Confidence            99999999999998888776543 3367999999999998764322  22221     1233456899999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030192          169 GLDWLSNNIASK  180 (181)
Q Consensus       169 ~~~~i~~~~~~~  180 (181)
                      +|.++++.+.+|
T Consensus       159 ~f~~l~~~i~~k  170 (173)
T d2fu5c1         159 AFFTLARDIKAK  170 (173)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.3e-32  Score=183.75  Aligned_cols=159  Identities=24%  Similarity=0.423  Sum_probs=124.2

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      -+||+++|++|+|||||++++.++.+.. ..||.+..+.  .+..  ..+.+.+|||||++.+...+..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            3799999999999999999999988764 4677665543  3433  457888999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      ||+++++++.....++........ ...|++++++|.|+.+.....+..+.+    ++..++++++|||++|.|++++|.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~i~~~~k~d~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~e~f~  156 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEAL----AKELGIPFIESSAKNDDNVNEIFF  156 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTCCSCHHHHHHH----HHHHTCCEEECBTTTTBSHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhcccc-CcceeeeecchhhhhhhhhhHHHHHHH----HHhcCCeEEEECCCCCCCHHHHHH
Confidence            999999999888887766655433 568999999999987654333332222    223456799999999999999999


Q ss_pred             HHHHHhhhc
Q 030192          172 WLSNNIASK  180 (181)
Q Consensus       172 ~i~~~~~~~  180 (181)
                      ++++.+.+|
T Consensus       157 ~l~~~i~~k  165 (166)
T d1g16a_         157 TLAKLIQEK  165 (166)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999999876

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.4e-31  Score=182.43  Aligned_cols=160  Identities=24%  Similarity=0.395  Sum_probs=128.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      ..+||+++|++|+|||||+++|.++.+... .++.+...  ..+..  ..+.+.+|||||++++...+..++..+|++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            358999999999999999999999887644 44444433  33444  45689999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      |||++++.++.....|+..+.........|+++++||.|....... ++..+     +.+..+++++++||++|.|++++
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~-----~~~~~~~~~~e~Sa~tg~gv~e~  160 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK-----FARKHSMLFIEASAKTCDGVQCA  160 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHH-----HHHHCCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999988877665567999999999998654322 22222     22334557999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030192          170 LDWLSNNIASK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |+++++.+.+.
T Consensus       161 f~~l~~~l~~~  171 (177)
T d1x3sa1         161 FEELVEKIIQT  171 (177)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHccC
Confidence            99999988753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.7e-32  Score=185.03  Aligned_cols=158  Identities=18%  Similarity=0.351  Sum_probs=123.7

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCcccee--EEEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~--~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      .+||+++|++|||||||++++.++.+.. ..++.+..  ...+..+  .+.+.+||++|++++...+..+++.+|++++|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            4799999999999999999999988764 34444433  3334443  46899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      ||.++++++.....|+..+..... .++|+++|+||+|+.+..... +.....    .+..+.++++|||++|.|++++|
T Consensus        84 ~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~i~e~f  158 (175)
T d2f9la1          84 YDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAF----AEKNNLSFIETSALDSTNVEEAF  158 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EECCCcccchhHHHHHHHHHHhcC-CCCcEEEEEeeecccccccchHHHHHHh----hcccCceEEEEecCCCcCHHHHH
Confidence            999999999999999888766443 579999999999997643211 111111    12234579999999999999999


Q ss_pred             HHHHHHhhh
Q 030192          171 DWLSNNIAS  179 (181)
Q Consensus       171 ~~i~~~~~~  179 (181)
                      +.+++.+.+
T Consensus       159 ~~l~~~i~~  167 (175)
T d2f9la1         159 KNILTEIYR  167 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.4e-32  Score=188.90  Aligned_cols=157  Identities=20%  Similarity=0.352  Sum_probs=125.5

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--EE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (181)
                      -+||+++|++|||||||+++|.++.+.. ..|+.+.....  +.  ...+.+.+|||||++++...+..+++.+|++++|
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v   85 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   85 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            4799999999999999999999888764 46676655433  33  3567899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      ||+++++++.....++..+.... ..+.|+++|+||+|+.+...  .++.....     +..+..++++||++|.|++++
T Consensus        86 ~d~t~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~SAk~g~gi~e~  159 (194)
T d2bcgy1          86 YDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVEDA  159 (194)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHHHH
T ss_pred             EeCcchhhhhhHhhhhhhhhhcc-cCCceEEEEEeccccccccchhHHHHhhhh-----hccCcceEEEecCcCccHHHH
Confidence            99999999999988887765433 36799999999999976432  22222111     123346889999999999999


Q ss_pred             HHHHHHHhhh
Q 030192          170 LDWLSNNIAS  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |..+++.+.+
T Consensus       160 f~~l~~~i~~  169 (194)
T d2bcgy1         160 FLTMARQIKE  169 (194)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.8e-32  Score=185.74  Aligned_cols=158  Identities=18%  Similarity=0.383  Sum_probs=118.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccc--cCccceeEEE--EEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (181)
                      ..+||+++|++|||||||++++.++.+...  .++.+.+...  +..  ..+.+++|||+|++++...+..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            357999999999999999999999886532  4455555443  333  3468999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +|||+++++++.....++........ ...|+++++||+|+.+...  .++....     .+..+++++++||++|.|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~d~~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~g~gi~  158 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKL-----AKEYGLPFMETSAKTGLNVD  158 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHH-----HHHHTCCEEECCTTTCTTHH
T ss_pred             EEecCCcccchhhhhhhhhhhhhccC-CCceEEEEEeeechhhcccccHHHHHHH-----HHHcCCEEEEEeCCCCcCHH
Confidence            99999999999999999887766543 5789999999999876532  2222221     22344579999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|.++++.+.+
T Consensus       159 e~f~~l~~~i~k  170 (170)
T d2g6ba1         159 LAFTAIAKELKR  170 (170)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCC
Confidence            999999998753

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.98  E-value=3.1e-30  Score=173.84  Aligned_cols=165  Identities=58%  Similarity=1.023  Sum_probs=150.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (181)
                      +.+||+++|++|||||||++++.++.+....++.+..........+.+.+||.+|...+...+.......+++++++|+.
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC   83 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhh
Confidence            45899999999999999999999999888888888888888889999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192           96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~  175 (181)
                      +..++.....++............|+++++||.|+.+.....++...+....+...++++++|||++|.|++++|++|.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~  163 (169)
T d1upta_          84 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE  163 (169)
T ss_dssp             CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999889888888887766678999999999999988888888888877777778899999999999999999999999


Q ss_pred             Hhhhc
Q 030192          176 NIASK  180 (181)
Q Consensus       176 ~~~~~  180 (181)
                      .+.+|
T Consensus       164 ~l~~k  168 (169)
T d1upta_         164 TLKSR  168 (169)
T ss_dssp             HHHTC
T ss_pred             HHHhC
Confidence            98875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.6e-31  Score=181.83  Aligned_cols=157  Identities=17%  Similarity=0.305  Sum_probs=111.5

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEEEEE-----CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      -+||+++|++|||||||+++|.++++... .|+.+........     ....+.+||++|++++...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            47999999999999999999998887643 4555443332222     34679999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCCCC---CHh---HHHhhhCCCcccCcceEEEEcccc
Q 030192           91 VVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNAM---NAA---EITDKLGLHSLRQRHWYIQSTCAT  161 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piivv~nK~Dl~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~S~~  161 (181)
                      |||++++.++.....|+.++...   ....++|+++++||+|+.+..   ..+   ++.+.++       ..++++|||+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-------~~~~~e~SA~  154 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG-------DIPLFLTSAK  154 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT-------SCCEEEEBTT
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcC-------CCeEEEEeCC
Confidence            99999999999988887766542   333578999999999987532   122   2222222       2368999999


Q ss_pred             CCCChHHHHHHHHHHhhhc
Q 030192          162 SGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~~~~  180 (181)
                      +|.|++++|.++++.+.++
T Consensus       155 ~g~gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         155 NAINVDTAFEEIARSALQQ  173 (175)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhc
Confidence            9999999999999987764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=3.3e-31  Score=181.64  Aligned_cols=160  Identities=17%  Similarity=0.285  Sum_probs=126.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEEE----CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (181)
                      +||+++|.+|||||||++++.++++.. +.||.+.+......    ..+.+.+||++|+..+...+..++..+|++++|+
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            689999999999999999999988764 46777766554433    4578999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192           93 DSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~---~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~  169 (181)
                      |.+++.++..+..|+..+...   ....++|+++|+||+|+.+.....+....+.   ....+.++++|||++|.|++++
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC---YSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH---HHTTSCCEEECBTTTTBSHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHH---HHhcCCeEEEEcCCCCcCHHHH
Confidence            999999999988887666443   3334689999999999877543332222211   1123457899999999999999


Q ss_pred             HHHHHHHhhhc
Q 030192          170 LDWLSNNIASK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |+++++.+.++
T Consensus       160 f~~l~~~i~~~  170 (184)
T d1vg8a_         160 FQTIARNALKQ  170 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999877653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-31  Score=181.77  Aligned_cols=160  Identities=15%  Similarity=0.158  Sum_probs=119.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcc--cccCccceeE--EEEEE--CCEEEEEEEcCCCCCcc-cchhhccccccEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIR-PLWRHYFQNTQGL   88 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~   88 (181)
                      .-+||+++|++|+|||||+++|.+..+.  ...++.+...  ..+..  ..+.+.+||+++..... ..+..+++.+|++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~   81 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence            3479999999999999999999887643  3445555432  23333  45678899987643222 2467788999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      ++|||++++.++.++..|+..+.......++|+++|+||+|+.+..  ..++...     ..+..++++++|||++|.|+
T Consensus        82 ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sak~g~~i  156 (172)
T d2g3ya1          82 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-----CAVVFDCKFIETSAAVQHNV  156 (172)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTBSH
T ss_pred             eeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHH-----HHHHcCCeEEEEeCCCCcCH
Confidence            9999999999999999999888776555689999999999987643  2222211     12233457999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030192          167 YEGLDWLSNNIASK  180 (181)
Q Consensus       167 ~~~~~~i~~~~~~~  180 (181)
                      +++|..+++.+..+
T Consensus       157 ~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         157 KELFEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999988654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-30  Score=176.07  Aligned_cols=160  Identities=14%  Similarity=0.294  Sum_probs=121.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--EEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (181)
                      .-+||+++|++|||||||++++.++.+.. +.+|.+.....  +..  ..+.+.+||++|..+....+..++..+|++++
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   84 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   84 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence            34699999999999999999999988764 45555544322  222  35788999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHc---CCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192           91 VVDSNDRDRVVEARDELHRMLN---EDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv  166 (181)
                      ++|.+++.++.....|+.++..   .....+.|+++|+||+|+.+.. ..++......    +....+|++|||++|.||
T Consensus        85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~----~~~~~~~~e~Sak~~~gI  160 (174)
T d1wmsa_          85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATNV  160 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTTH
T ss_pred             EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHH----HcCCCeEEEEcCCCCcCH
Confidence            9999999999988887755543   3344578999999999997633 2333222111    012346899999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030192          167 YEGLDWLSNNIAS  179 (181)
Q Consensus       167 ~~~~~~i~~~~~~  179 (181)
                      +++|.++++.+..
T Consensus       161 ~e~f~~l~~~il~  173 (174)
T d1wmsa_         161 AAAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998763

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.5e-29  Score=168.53  Aligned_cols=157  Identities=39%  Similarity=0.640  Sum_probs=139.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   98 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (181)
                      ||+++|++|+|||||+|++.++.+....|+.+.........+....+||++|...+...+..+...++++++++|.++..
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   81 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE   81 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence            79999999999999999999999888889999888888888999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-------cCcceEEEEccccCCCChHHHHH
Q 030192           99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-------RQRHWYIQSTCATSGEGLYEGLD  171 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~S~~~~~gv~~~~~  171 (181)
                      ++.....++..........+.|+++++||.|+.......++.+.+.+...       ....+++++|||++|+|++|+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~  161 (166)
T d2qtvb1          82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ  161 (166)
T ss_dssp             GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHH
T ss_pred             hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHH
Confidence            99999998888888777788999999999999887777777776654333       23567899999999999999999


Q ss_pred             HHHH
Q 030192          172 WLSN  175 (181)
Q Consensus       172 ~i~~  175 (181)
                      +|.+
T Consensus       162 ~l~~  165 (166)
T d2qtvb1         162 WLSQ  165 (166)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            9864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-30  Score=175.99  Aligned_cols=154  Identities=12%  Similarity=0.171  Sum_probs=116.5

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      .+||+++|++|||||||++++.++.+....++.+..+. .+..  ..+.+.+||++|+.++.     +++.+|++++|||
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilVfd   79 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFS   79 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEEee
Confidence            58999999999999999999999998766666555543 2333  45789999999987653     6788999999999


Q ss_pred             CCCcccHHHHHHHHHHHH--cCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192           94 SNDRDRVVEARDELHRML--NEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~--~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      ++++++++.+..|+..+.  ......+.|+++|+||.|+....    ..++.....    .+..+++|++|||++|.|++
T Consensus        80 ~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~----~~~~~~~~~e~SAk~~~~v~  155 (175)
T d2bmja1          80 LEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALC----ADMKRCSYYETCATYGLNVD  155 (175)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHH----HTSTTEEEEEEBTTTTBTHH
T ss_pred             cccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHH----HHhCCCeEEEeCCCCCcCHH
Confidence            999999999888776653  33333568999999999875421    122222111    12245689999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030192          168 EGLDWLSNNIAS  179 (181)
Q Consensus       168 ~~~~~i~~~~~~  179 (181)
                      ++|..+++.+.+
T Consensus       156 ~~F~~l~~~i~~  167 (175)
T d2bmja1         156 RVFQEVAQKVVT  167 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.4e-31  Score=177.15  Aligned_cols=153  Identities=21%  Similarity=0.340  Sum_probs=117.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE--EEE--ECCEEEEEEEcCCCCCccc-chhhccccccEEE
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRP-LWRHYFQNTQGLI   89 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i   89 (181)
                      +.+||+++|++|||||||+++|.++.+... .++.+....  ...  .....+.+||++|...+.. .+..+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            357999999999999999999999887643 455443332  222  3567899999999877654 4677889999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccC---CC
Q 030192           90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATS---GE  164 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~  164 (181)
                      +|||++++++++.+..|+..+.......++|+++|+||+|+.+..  ..++..+     +.++.++++++|||++   +.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~SAkt~~~~~  155 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-----FADTHSMPLFETSAKNPNDND  155 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCCEEECCSSSGGGGS
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHH-----HHHHCCCEEEEEecccCCcCc
Confidence            999999999999999999888776666789999999999987643  2222221     1223345689999997   55


Q ss_pred             ChHHHHHHH
Q 030192          165 GLYEGLDWL  173 (181)
Q Consensus       165 gv~~~~~~i  173 (181)
                      ||+++|.+|
T Consensus       156 ~V~e~F~~l  164 (165)
T d1z06a1         156 HVEAIFMTL  164 (165)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHh
Confidence            999999876

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.96  E-value=2.3e-28  Score=166.90  Aligned_cols=164  Identities=29%  Similarity=0.605  Sum_probs=133.3

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   93 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (181)
                      .++..||+++|++|||||||+++|.++.+....|+.+.+...+...+..+..||+++...+...+..+....+++++++|
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   89 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVD   89 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeeee
Confidence            36789999999999999999999999998877788888888888889999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC------------cccCcceEEEEcccc
Q 030192           94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCAT  161 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~S~~  161 (181)
                      .++...+......+..........+.|+++++||.|+.......++.+.+...            .....++++++|||+
T Consensus        90 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  169 (186)
T d1f6ba_          90 CADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL  169 (186)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTT
T ss_pred             ccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCC
Confidence            99999998888888777777777889999999999998776666666555422            123356789999999


Q ss_pred             CCCChHHHHHHHHHHh
Q 030192          162 SGEGLYEGLDWLSNNI  177 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~  177 (181)
                      +|+|++|+|+|+.+.+
T Consensus       170 tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         170 KRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TTBSHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhh
Confidence            9999999999998765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.9e-28  Score=167.83  Aligned_cols=163  Identities=24%  Similarity=0.451  Sum_probs=132.9

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (181)
                      +.+||+++|+.|||||||+++|..+.+ .+.||.|.....+....+.+++||++|++.++..+..+++.++++++|+|.+
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~   79 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS   79 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence            468999999999999999999988877 4679999999999999999999999999999999999999999999999987


Q ss_pred             Ccc----------cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC------------------CHhHHHh-----h
Q 030192           96 DRD----------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------------------NAAEITD-----K  142 (181)
Q Consensus        96 ~~~----------s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------------~~~~~~~-----~  142 (181)
                      +..          .+.+....|..++.+....+.|+++++||.|+....                  .......     .
T Consensus        80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f  159 (200)
T d2bcjq2          80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF  159 (200)
T ss_dssp             GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred             chhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHH
Confidence            643          456667778888887777889999999999974310                  1111111     1


Q ss_pred             hCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       143 ~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      ..........+.+++|||++|.||+++|+.+.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            1233334566888999999999999999999888765

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=6.8e-28  Score=165.98  Aligned_cols=161  Identities=27%  Similarity=0.463  Sum_probs=126.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (181)
                      +.+||+++|+.|||||||+++|....+    ||.++....+......+++||++|+++++..+..+++.++++++|+|++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~   76 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS   76 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence            458999999999999999999976544    5667777788999999999999999999999999999999999999998


Q ss_pred             CcccH----------HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-----------------CCHhHHHh----hh-
Q 030192           96 DRDRV----------VEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----------------MNAAEITD----KL-  143 (181)
Q Consensus        96 ~~~s~----------~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-----------------~~~~~~~~----~~-  143 (181)
                      +.+++          .+...+|..++.+....+.|+++++||+|+...                 ....+...    .+ 
T Consensus        77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  156 (195)
T d1svsa1          77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFE  156 (195)
T ss_dssp             GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHH
T ss_pred             ccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHH
Confidence            76543          455667888888777788999999999996321                 11111111    11 


Q ss_pred             CCC-cccCcceEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192          144 GLH-SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       144 ~~~-~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      ... ......+++++|||++|.||+++|+.+.+.+.++
T Consensus       157 ~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         157 DLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             TTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            111 1223567888999999999999999998887654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2.6e-26  Score=156.23  Aligned_cols=154  Identities=16%  Similarity=0.055  Sum_probs=107.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc--ccc--CccceeEEEEEECCEEEEEEEcCCCCCcccc--------hhhccccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNT   85 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~   85 (181)
                      -.|+++|++|||||||+|+|++.+..  +..  .|...........+..+.+|||||.......        ...+++++
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~a   85 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV   85 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccccc
Confidence            37999999999999999999987643  222  2334444556778899999999997554322        23446789


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      |++++|+|++++...  ...++...++... .++|+++|+||+|+.+..  ++..+.+... +  ....++++||++|.|
T Consensus        86 d~il~v~D~~~~~~~--~~~~i~~~l~~~~-~~~piilv~NK~Dl~~~~--~~~~~~~~~~-~--~~~~~~~iSA~~~~g  157 (178)
T d1wf3a1          86 NAVVWVVDLRHPPTP--EDELVARALKPLV-GKVPILLVGNKLDAAKYP--EEAMKAYHEL-L--PEAEPRMLSALDERQ  157 (178)
T ss_dssp             SEEEEEEETTSCCCH--HHHHHHHHHGGGT-TTSCEEEEEECGGGCSSH--HHHHHHHHHT-S--TTSEEEECCTTCHHH
T ss_pred             cceeeeechhhhhcc--cccchhhheeccc-cchhhhhhhcccccccCH--HHHHHHHHhh-c--ccCceEEEecCCCCC
Confidence            999999999875443  3455555555432 468999999999986542  2222211100 0  112577899999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030192          166 LYEGLDWLSNNIAS  179 (181)
Q Consensus       166 v~~~~~~i~~~~~~  179 (181)
                      ++++++.|.+.+.+
T Consensus       158 i~~L~~~i~~~lpe  171 (178)
T d1wf3a1         158 VAELKADLLALMPE  171 (178)
T ss_dssp             HHHHHHHHHTTCCB
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999987743

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.3e-26  Score=158.20  Aligned_cols=162  Identities=26%  Similarity=0.421  Sum_probs=120.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (181)
                      +.+||+++|++|||||||+++|.  ......||.|.....+......+.+||++|++.++..+..+++.++++++++|.+
T Consensus         1 r~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~   78 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS   78 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence            45899999999999999999993  2235688999999999999999999999999999999999999999999999998


Q ss_pred             Ccc----------cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC------------------CCHhHHHh----hh
Q 030192           96 DRD----------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------------MNAAEITD----KL  143 (181)
Q Consensus        96 ~~~----------s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------------~~~~~~~~----~~  143 (181)
                      +..          ++.....+|..++.+....++|+++++||+|+.+.                  ...+...+    .+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f  158 (200)
T d1zcba2          79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF  158 (200)
T ss_dssp             CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred             CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence            643          45677778888888877789999999999997431                  11111111    11


Q ss_pred             C--CCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          144 G--LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       144 ~--~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      .  ........+.+++|||+++.||+++|+.+.+.+.+
T Consensus       159 ~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            1  11112245667789999999999999998887654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.93  E-value=9.2e-26  Score=153.61  Aligned_cols=160  Identities=16%  Similarity=0.151  Sum_probs=112.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCccccc---C-------ccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---P-------TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN   84 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (181)
                      .+.++|+++|++|+|||||+|+|.+.......   +       +.......+...+..+.++|+||+.++.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            46789999999999999999999865422111   1       1112233456688999999999999988888888899


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh---HHHhhhCCCcccCcceEEEEcccc
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---EITDKLGLHSLRQRHWYIQSTCAT  161 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~S~~  161 (181)
                      +|++++|+|+.+....+. ...+.....    .++|+++|+||+|+.+....+   +..+.+........+.+++++||+
T Consensus        83 ~d~~ilv~d~~~g~~~~~-~~~~~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQT-GEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             CCEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             ccccccccccccccchhh-hhhhhhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            999999999987544332 222322222    478999999999998753222   222222111122345678899999


Q ss_pred             CCCChHHHHHHHHHHhhh
Q 030192          162 SGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       162 ~~~gv~~~~~~i~~~~~~  179 (181)
                      +|.|++++++.|.+.+.+
T Consensus       158 ~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcCCc
Confidence            999999999999988764

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.6e-25  Score=157.19  Aligned_cols=162  Identities=25%  Similarity=0.399  Sum_probs=128.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   94 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (181)
                      ++..||+++|+.|||||||++++..+.   ..||.|+....+..+++.+++||++|+..++..|..+++.++++++|+|.
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~   80 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVAS   80 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEET
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEc
Confidence            456899999999999999999997544   35899999999999999999999999999999999999999999999998


Q ss_pred             CCc----------ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC------CCH----------------------
Q 030192           95 NDR----------DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------MNA----------------------  136 (181)
Q Consensus        95 ~~~----------~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~------~~~----------------------  136 (181)
                      ++.          .++.+....|..++.+....++|++|++||+|+.+.      ...                      
T Consensus        81 s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~  160 (221)
T d1azta2          81 SSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGE  160 (221)
T ss_dssp             TGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTC
T ss_pred             cccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCC
Confidence            743          356677788889999887788999999999998531      010                      


Q ss_pred             ----hHH--------HhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192          137 ----AEI--------TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       137 ----~~~--------~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                          .+.        .+........+..+..++|||+++.+++.+|+.+.+.+..
T Consensus       161 ~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         161 DPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence                011        1111112222345677789999999999999988776654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=6e-25  Score=146.93  Aligned_cols=149  Identities=19%  Similarity=0.228  Sum_probs=107.4

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCccc--------chhhcccc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQN   84 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~   84 (181)
                      .++|+++|++|||||||+|+|++.+..  ...|  +.......+...+..+.++|+||..+...        ....++..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ   80 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence            379999999999999999999987643  2222  33333456777889999999999644322        13345678


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  164 (181)
                      +|++++++|..+..++.....+. ..+.... .++|+++|+||+|+.+....          ..+..+.+++++||++|.
T Consensus        81 ~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~-~~~~iilv~NK~Dl~~~~~~----------~~~~~~~~~~~iSAk~~~  148 (161)
T d2gj8a1          81 ADRVLFMVDGTTTDAVDPAEIWP-EFIARLP-AKLPITVVRNKADITGETLG----------MSEVNGHALIRLSARTGE  148 (161)
T ss_dssp             CSEEEEEEETTTCCCCSHHHHCH-HHHHHSC-TTCCEEEEEECHHHHCCCCE----------EEEETTEEEEECCTTTCT
T ss_pred             ccccceeeccccccchhhhhhhh-hhhhhcc-cccceeeccchhhhhhhHHH----------HHHhCCCcEEEEECCCCC
Confidence            99999999999877665554433 2322222 46899999999998653211          112245689999999999


Q ss_pred             ChHHHHHHHHHHh
Q 030192          165 GLYEGLDWLSNNI  177 (181)
Q Consensus       165 gv~~~~~~i~~~~  177 (181)
                      |+++++++|.+.+
T Consensus       149 gi~~L~~~l~~~l  161 (161)
T d2gj8a1         149 GVDVLRNHLKQSM  161 (161)
T ss_dssp             THHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=3.2e-25  Score=151.02  Aligned_cols=154  Identities=23%  Similarity=0.253  Sum_probs=103.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCccc-c--cCccceeEEEEEE-CCEEEEEEEcCCCCCcc-------cchhhccccccE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEY-KNISFTVWDVGGQDKIR-------PLWRHYFQNTQG   87 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~-~--~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d~   87 (181)
                      +|+++|.+|||||||+|+|++..... .  ..+.......... .+..+.+|||||..+..       ......+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            58999999999999999999876432 2  2233333333322 56789999999953321       123344578999


Q ss_pred             EEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           88 LIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        88 ~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      +++++|.....  .+.....++...  .....++|+++|+||+|+.+....+++.+.+..     .+.+++.+||++|.|
T Consensus        83 ~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~iSA~tg~g  155 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETLRKEVGAY--DPALLRRPSLVALNKVDLLEEEAVKALADALAR-----EGLAVLPVSALTGAG  155 (180)
T ss_dssp             EEEEEETTSCHHHHHHHHHHHHHHH--CHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHT-----TTSCEEECCTTTCTT
T ss_pred             hhhhcccccccccchhhhhhhhhcc--ccccchhhhhhhhhhhhhhhHHHHHHHHHHHHh-----cCCeEEEEEcCCCCC
Confidence            99999986432  222222222221  111135899999999999876555554444432     355789999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030192          166 LYEGLDWLSNNIAS  179 (181)
Q Consensus       166 v~~~~~~i~~~~~~  179 (181)
                      ++++++.|.+.+.+
T Consensus       156 id~L~~~i~~~l~~  169 (180)
T d1udxa2         156 LPALKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=4.4e-25  Score=149.11  Aligned_cols=152  Identities=19%  Similarity=0.184  Sum_probs=101.1

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCccc--c--cCccceeEEEEEECCEEEEEEEcCCCCC---------cccchhhccccc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVT--T--IPTIGFNVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQNT   85 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~--~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~~   85 (181)
                      +|+++|++|||||||+|+|++.....  .  ..|.......+......+.++|++|...         +......++..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            68999999999999999999876432  1  2244445566788899999999999422         122234445789


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      |+++++.|.+......  ...+...+..   .++|+++|+||+|+.+....+...+.....     ...++++||++|.|
T Consensus        82 d~i~~~~~~~~~~~~~--~~~~~~~l~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~i~iSAk~g~g  151 (171)
T d1mkya1          82 DLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREFEREVKPELYSLG-----FGEPIPVSAEHNIN  151 (171)
T ss_dssp             SEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGGGS-----SCSCEECBTTTTBS
T ss_pred             cEEEEeeccccccccc--cccccccccc---ccccccccchhhhhhhhhhhHHHHHHHhcC-----CCCeEEEecCCCCC
Confidence            9999999987654442  2233333332   468999999999986532222112211111     12357899999999


Q ss_pred             hHHHHHHHHHHhhhc
Q 030192          166 LYEGLDWLSNNIASK  180 (181)
Q Consensus       166 v~~~~~~i~~~~~~~  180 (181)
                      +++++++|.+.+.++
T Consensus       152 id~L~~~i~~~l~e~  166 (171)
T d1mkya1         152 LDTMLETIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999998775

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.2e-24  Score=148.71  Aligned_cols=161  Identities=17%  Similarity=0.143  Sum_probs=107.4

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCc------------ccc
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI------------RPL   77 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~------------~~~   77 (181)
                      ..+.++|+++|++|+|||||+|+|++....  ...+  +.......+...+..+.++|+||....            ...
T Consensus         5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHH
Confidence            356799999999999999999999987643  2222  223333456678889999999995332            223


Q ss_pred             hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEE
Q 030192           78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYI  155 (181)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~  155 (181)
                      ...+++.+|++++|+|++.+...  ....+..++..   .++|+|+|+||+|+....  ...++.+.+..........++
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~--~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITR--QDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  159 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCH--HHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHhcCCEEEEeecccccchh--hHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeE
Confidence            44455789999999999765442  22333333332   478999999999986543  233333333222122223468


Q ss_pred             EEccccCCCChHHHHHHHHHHhhh
Q 030192          156 QSTCATSGEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       156 ~~~S~~~~~gv~~~~~~i~~~~~~  179 (181)
                      +++||++|.|++++++.|.+++.+
T Consensus       160 ~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         160 IFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHh
Confidence            899999999999999999887654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=5.4e-24  Score=142.07  Aligned_cols=145  Identities=24%  Similarity=0.308  Sum_probs=106.6

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc--ccc--CccceeEEEEEECCEEEEEEEcCCCCCcc---------cchhhcccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQN   84 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~   84 (181)
                      +||+++|.+|+|||||+|+|.+.+..  +..  .+.......+...+..+.+|||||.....         ......+..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK   80 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence            58999999999999999999887643  222  23333445677789999999999942110         112223567


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192           85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  164 (181)
                      +|++++|+|++++...+...-+  ..+     ...++++++||.|+.+....+++...+...      .+++++||++|.
T Consensus        81 ad~ii~v~d~~~~~~~~~~~~~--~~~-----~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~------~~~~~vSA~~g~  147 (160)
T d1xzpa2          81 ADIVLFVLDASSPLDEEDRKIL--ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLGTD------RHMVKISALKGE  147 (160)
T ss_dssp             CSEEEEEEETTSCCCHHHHHHH--HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHTCS------TTEEEEEGGGTC
T ss_pred             CCEEEEEEeCCCCcchhhhhhh--hhc-----ccccceeeeeeccccchhhhHHHHHHhCCC------CcEEEEECCCCC
Confidence            9999999999987765443222  222     357799999999999888877877766532      257899999999


Q ss_pred             ChHHHHHHHHH
Q 030192          165 GLYEGLDWLSN  175 (181)
Q Consensus       165 gv~~~~~~i~~  175 (181)
                      |++++++.|.+
T Consensus       148 gi~~L~~~I~k  158 (160)
T d1xzpa2         148 GLEKLEESIYR  158 (160)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHh
Confidence            99999998765

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.91  E-value=8.7e-25  Score=149.14  Aligned_cols=156  Identities=19%  Similarity=0.275  Sum_probs=100.1

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEEECCEEEEEEEcCCCCCc---------------ccchhhcc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKI---------------RPLWRHYF   82 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------------~~~~~~~~   82 (181)
                      .|+++|.||+|||||+|++.+.+.. +..|........+...+  +.++||||....               ........
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~~~--~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKN--HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA   79 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETT--EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccccccc--ceecccCCceeccccccccccccchhhhhhhhhcc
Confidence            6899999999999999999987653 22332222233444444  578999994211               11233445


Q ss_pred             ccccEEEEEEECCCcccHHHH---------HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCc
Q 030192           83 QNTQGLIFVVDSNDRDRVVEA---------RDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQR  151 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~---------~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~  151 (181)
                      +.+|++++|+|+..+......         ...+...+..   .++|+++|+||+|+.....  ...+.+.+... ....
T Consensus        80 ~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~-~~~~  155 (184)
T d2cxxa1          80 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSEI  155 (184)
T ss_dssp             GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGGH
T ss_pred             cccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHHHHHHHHHHhccc-cccc
Confidence            679999999998643221111         1122223332   4789999999999765321  11223333332 2333


Q ss_pred             ceEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192          152 HWYIQSTCATSGEGLYEGLDWLSNNIASK  180 (181)
Q Consensus       152 ~~~~~~~S~~~~~gv~~~~~~i~~~~~~~  180 (181)
                      ...++++||++|.|++++++.+.+.+.+|
T Consensus       156 ~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         156 DKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             HHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence            44577899999999999999999998875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4.1e-23  Score=143.37  Aligned_cols=157  Identities=27%  Similarity=0.373  Sum_probs=111.7

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE---CCEEEEEEEcCCCCCcc-cchhhccccccEEEEEEEC
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIR-PLWRHYFQNTQGLIFVVDS   94 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~v~d~   94 (181)
                      +|+++|++|||||||+++|.++.+....|+.+.+...+..   ..+.+.+||++|+++++ ..+..+++.++++++|+|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~   81 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS   81 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence            7999999999999999999999887777877777666554   56789999999998875 4567788999999999999


Q ss_pred             CCccc-HHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-----------------------CCcc
Q 030192           95 NDRDR-VVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLG-----------------------LHSL  148 (181)
Q Consensus        95 ~~~~s-~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----------------------~~~~  148 (181)
                      ++..+ +....+++.+++..  ....++|+++++||+|+.+....+++.+.+.                       ...+
T Consensus        82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
T d2fh5b1          82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL  161 (207)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred             ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence            98655 34555555555432  1224689999999999987665555443221                       0000


Q ss_pred             -----------cCcceEEEEccccCCCC------hHHHHHHHHH
Q 030192          149 -----------RQRHWYIQSTCATSGEG------LYEGLDWLSN  175 (181)
Q Consensus       149 -----------~~~~~~~~~~S~~~~~g------v~~~~~~i~~  175 (181)
                                 .+..+.++++|+++|.|      ++++-+|+.+
T Consensus       162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~  205 (207)
T d2fh5b1         162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK  205 (207)
T ss_dssp             SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred             cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHH
Confidence                       12346789999999887      6666666654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=6.3e-24  Score=146.27  Aligned_cols=162  Identities=12%  Similarity=0.041  Sum_probs=98.8

Q ss_pred             hhhcccccEEEEEcCCCCChHHHHhhHhcCCcc---cccCccceeEEEEEECCEEEEEEEcCCCCCc-------------
Q 030192           11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNISFTVWDVGGQDKI-------------   74 (181)
Q Consensus        11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------------   74 (181)
                      +.+...-.+|+++|++|||||||+|+|++.+..   ...++......... ....+.+.|++|....             
T Consensus        17 ~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   95 (195)
T d1svia_          17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI-INDELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE-ETTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             HCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc-ccccceEEEEEeeccccccccccchhhhH
Confidence            344455559999999999999999999986532   11222211222222 2334556777663211             


Q ss_pred             ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceE
Q 030192           75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY  154 (181)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  154 (181)
                      ..........+|++++|+|+..+..  .....+.+.+..   .++|+++|+||+|+......++..+.+....-.....+
T Consensus        96 ~~~~~~~~~~~~~vi~viD~~~~~~--~~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~  170 (195)
T d1svia_          96 IETYITTREELKAVVQIVDLRHAPS--NDDVQMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE  170 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred             Hhhhhccccchhhhhhhhhcccccc--cccccccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCC
Confidence            1122334456899999999976533  232333334443   46899999999998765544443332221111234557


Q ss_pred             EEEccccCCCChHHHHHHHHHHhh
Q 030192          155 IQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       155 ~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      ++.+||++|.|+++++++|.+.+.
T Consensus       171 ~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         171 LILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhC
Confidence            889999999999999999988763

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=5.3e-23  Score=140.43  Aligned_cols=155  Identities=22%  Similarity=0.240  Sum_probs=101.9

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCcc--cc-cCccceeEEEEEE-CCEEEEEEEcCCCC----Ccccc---hhhccccccE
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEY-KNISFTVWDVGGQD----KIRPL---WRHYFQNTQG   87 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~--~~-~~~~~~~~~~~~~-~~~~~~i~D~~g~~----~~~~~---~~~~~~~~d~   87 (181)
                      +|+++|++|||||||+|+|.+....  .. ..|.......... ....+.+|||||..    .....   ....+..++.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV   82 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence            6899999999999999999876643  11 2344444444444 44679999999942    11111   2223456899


Q ss_pred             EEEEEECCCcccHH--HHH--HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccC
Q 030192           88 LIFVVDSNDRDRVV--EAR--DELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
Q Consensus        88 ~i~v~d~~~~~s~~--~~~--~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~  162 (181)
                      ++++++....+...  ...  .............++|+++|+||+|+.+... .+.+...+.      .+.+++.+||++
T Consensus        83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~------~~~~v~~iSA~~  156 (185)
T d1lnza2          83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------DDYPVFPISAVT  156 (185)
T ss_dssp             EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCCCBCCCSSCC
T ss_pred             hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhc------cCCcEEEEECCC
Confidence            99998876543321  111  1222333344556789999999999976432 223333222      244688999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030192          163 GEGLYEGLDWLSNNIAS  179 (181)
Q Consensus       163 ~~gv~~~~~~i~~~~~~  179 (181)
                      |.|++++++.+.+.+.+
T Consensus       157 g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         157 REGLRELLFEVANQLEN  173 (185)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHhhhh
Confidence            99999999999998864

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=1.5e-22  Score=142.43  Aligned_cols=156  Identities=19%  Similarity=0.135  Sum_probs=102.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccc---cCccceeE------------------EEEEECCEEEEEEEcCCCCCccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNV------------------ETVEYKNISFTVWDVGGQDKIRP   76 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~------------------~~~~~~~~~~~i~D~~g~~~~~~   76 (181)
                      ..|+++|++++|||||+++|++......   ..+.....                  ..+...+..+.++||||+.+|..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~   85 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT   85 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence            3499999999999999999986432110   00100001                  11233566899999999999998


Q ss_pred             chhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhh-----------
Q 030192           77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDK-----------  142 (181)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~-----------  142 (181)
                      .....+..+|++++|+|+.+.-..  ........+..   .++|+|+++||+|+.+....   ..+...           
T Consensus        86 ~~~~~~~~~D~~ilVvda~~g~~~--~~~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~  160 (227)
T d1g7sa4          86 LRKRGGALADLAILIVDINEGFKP--QTQEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQK  160 (227)
T ss_dssp             SBCSSSBSCSEEEEEEETTTCCCH--HHHHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHH
T ss_pred             cchhcccccceEEEEEecccCccc--chhHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHH
Confidence            888888999999999999764332  22222233332   57899999999998753211   000000           


Q ss_pred             -----------hCCCc----------ccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          143 -----------LGLHS----------LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       143 -----------~~~~~----------~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                                 +....          ......+++++||++|.|++++++.+.....
T Consensus       161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         161 LDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                       00000          0113467999999999999999998877553

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.88  E-value=4.7e-23  Score=141.88  Aligned_cols=159  Identities=19%  Similarity=0.120  Sum_probs=105.4

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCccc--c----cCccc--eeEEEEE---------------------ECCEEEE
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT--T----IPTIG--FNVETVE---------------------YKNISFT   64 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~----~~~~~--~~~~~~~---------------------~~~~~~~   64 (181)
                      ++..++|+++|+.++|||||+++|++.....  .    ..+..  +......                     .....+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            4567899999999999999999998643210  0    11111  1111111                     1134689


Q ss_pred             EEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh----HHH
Q 030192           65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EIT  140 (181)
Q Consensus        65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~----~~~  140 (181)
                      ++|+||+.+|.......+..+|++++|+|+.+....+...+.+......   ..+++++++||+|+.+.....    .+.
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~  158 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK  158 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHH
Confidence            9999999999988888889999999999998753223333322222221   235688899999998753222    222


Q ss_pred             hhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      +.+..  ....+++++++||++|.|++++++.+.+.+
T Consensus       159 ~~~~~--~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         159 EFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHhcc--ccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            22221  222456789999999999999999988765

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.86  E-value=3.4e-22  Score=138.54  Aligned_cols=159  Identities=16%  Similarity=0.093  Sum_probs=103.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc------cC--ccceeEEEE--------------------------EECC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT------IP--TIGFNVETV--------------------------EYKN   60 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~------~~--~~~~~~~~~--------------------------~~~~   60 (181)
                      +..++|+++|+.++|||||+++|++......      ..  ..+.....+                          ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            4458999999999999999999986321100      00  000000000                          0112


Q ss_pred             EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH--
Q 030192           61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--  138 (181)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--  138 (181)
                      ..+.++|+||+.+|.......+..+|++++|+|+.+.-.-....+.+......   .-.|+|+++||+|+.+......  
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHH
Confidence            46899999999999988888889999999999997642112222223222221   2358899999999987532222  


Q ss_pred             --HHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192          139 --ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       139 --~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                        +...+.  .....+++++++||++|.|++++++.+...+.
T Consensus       163 ~~~~~~l~--~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         163 RQIKQFTK--GTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHHT--TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHhc--cccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence              222222  22234578999999999999999999887764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.85  E-value=1.4e-21  Score=134.05  Aligned_cols=157  Identities=18%  Similarity=0.096  Sum_probs=107.6

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCC-------c---------c-c--ccCccceeEEEEEECCEEEEEEEcCCCCCcccc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGE-------I---------V-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL   77 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~-------~---------~-~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (181)
                      .++|+++|+.++|||||++++++.-       .         . +  ..-|.......+...+..+.++|+||+.+|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            5899999999999999999997410       0         0 0  011333344566778899999999999999988


Q ss_pred             hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-Hh----HHHhhhCCCcccCcc
Q 030192           78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AA----EITDKLGLHSLRQRH  152 (181)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~  152 (181)
                      ....+..+|++++|+|+.+...-+. .+.+......   ..+|+|+++||+|+..... .+    ++...+....+....
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            8888899999999999987544332 2222222221   2467999999999875321 12    223333222233445


Q ss_pred             eEEEEccccCC----------CChHHHHHHHHHHh
Q 030192          153 WYIQSTCATSG----------EGLYEGLDWLSNNI  177 (181)
Q Consensus       153 ~~~~~~S~~~~----------~gv~~~~~~i~~~~  177 (181)
                      ++++.+|+++|          .|++++++.+.+.+
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            78999999998          48888888776654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.83  E-value=1.3e-19  Score=126.43  Aligned_cols=151  Identities=17%  Similarity=0.117  Sum_probs=102.9

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhcCC--cc----------------------------------cccCccceeEEE
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKLGE--IV----------------------------------TTIPTIGFNVET   55 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~----------------------------------~~~~~~~~~~~~   55 (181)
                      ..++..++|+++|+.++|||||+++|+...  ..                                  ....+.......
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            345678899999999999999999995310  00                                  001122233445


Q ss_pred             EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCC-CeEEEEEeCCCCCCCC
Q 030192           56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPNAM  134 (181)
Q Consensus        56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~Dl~~~~  134 (181)
                      +...+..+.++|+||+.+|..........+|++++|+|+.....-+....+  .++..   .+ +.+|+++||+|+.+..
T Consensus        84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~--~~~~~---~gv~~iiv~vNK~D~~~~~  158 (222)
T d1zunb3          84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS--YIASL---LGIKHIVVAINKMDLNGFD  158 (222)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH--HHHHH---TTCCEEEEEEECTTTTTSC
T ss_pred             EeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHH--HHHHH---cCCCEEEEEEEcccccccc
Confidence            556788999999999999999888888999999999999765443332222  22222   34 4588999999998633


Q ss_pred             C------HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192          135 N------AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus       135 ~------~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      +      .+++...+....+....++++++||++|.|+.
T Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         159 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            1      12222333333344567889999999999984

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=2.7e-20  Score=128.52  Aligned_cols=142  Identities=18%  Similarity=0.123  Sum_probs=97.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC--------c-----ccc-------cCccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE--------I-----VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIR   75 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~--------~-----~~~-------~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (181)
                      ..++|+++|++++|||||+++|+...        .     ...       .-|+......+...+..++++||||+.+|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            35899999999999999999996310        0     001       225555667788899999999999999999


Q ss_pred             cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCccc
Q 030192           76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSLR  149 (181)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~  149 (181)
                      ......++.+|++|+|+|+.+.-..+... .|.....    .++| +++++||+|+.+..+ .+    ++...+....+.
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  156 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  156 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            98888899999999999998765544333 2333323    3554 788899999876321 12    223322222222


Q ss_pred             CcceEEEEccccC
Q 030192          150 QRHWYIQSTCATS  162 (181)
Q Consensus       150 ~~~~~~~~~S~~~  162 (181)
                      ....+++..|+..
T Consensus       157 ~~~i~~i~~sa~~  169 (204)
T d2c78a3         157 GDEVPVIRGSALL  169 (204)
T ss_dssp             TTTSCEEECCHHH
T ss_pred             cccceeeeeechh
Confidence            3445677888754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=9.1e-19  Score=125.16  Aligned_cols=112  Identities=22%  Similarity=0.162  Sum_probs=87.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC--Cc------------cc-------ccCccceeEEEEEECCEEEEEEEcCCCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG--EI------------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDK   73 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~------------~~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (181)
                      ++..+|+++|+.++|||||+.+++..  ..            ..       ...|+......+.+.+..++++||||+.+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVD   83 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhh
Confidence            34458999999999999999999631  00            00       11245556677889999999999999999


Q ss_pred             cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      |.......++.+|+.|+|+|+.+.-..+ ....|.....    .++|.++++||+|..
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~-T~~~w~~a~~----~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQ-SETVWRQAEK----YKVPRIAFANKMDKT  136 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHH-HHHHHHHHHT----TTCCEEEEEECTTST
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchh-HHHHHHHHHH----cCCCEEEEEeccccc
Confidence            9999999999999999999998754443 3334444444    489999999999985

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=5.5e-19  Score=119.43  Aligned_cols=153  Identities=18%  Similarity=0.140  Sum_probs=96.7

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCCccc--cc-Cccce-eEEEEEECCEEEEEEEcCCCCCc---------ccchhhccccc
Q 030192           19 RILMVGLDAAGKTTILYKLKLGEIVT--TI-PTIGF-NVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQNT   85 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~~~~--~~-~~~~~-~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~~   85 (181)
                      .|+++|.+|||||||+|+|++.+...  .. .+... ...........+..+|++|....         ..........+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV   86 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhc
Confidence            58999999999999999999877542  11 22222 23344456777888898884321         12223334568


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192           86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g  165 (181)
                      ++++++.|..+...  ....++..+..    ...|.++++||+|.....  .++.........+-...+++++||++|.|
T Consensus        87 ~~~l~~~d~~~~~~--~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~--~~~~~~~~~~~~~~~~~~~~~vSA~~g~g  158 (179)
T d1egaa1          87 ELVIFVVEGTRWTP--DDEMVLNKLRE----GKAPVILAVNKVDNVQEK--ADLLPHLQFLASQMNFLDIVPISAETGLN  158 (179)
T ss_dssp             EEEEEEEETTCCCH--HHHHHHHHHHS----SSSCEEEEEESTTTCCCH--HHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             ceeEEEEecCccch--hHHHHHHHhhh----ccCceeeeeeeeeccchh--hhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence            88888999865432  22233333333    357889999999976542  12211111000111234789999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030192          166 LYEGLDWLSNNIAS  179 (181)
Q Consensus       166 v~~~~~~i~~~~~~  179 (181)
                      ++++++.+.+.+.+
T Consensus       159 i~~L~~~i~~~lpe  172 (179)
T d1egaa1         159 VDTIAAIVRKHLPE  172 (179)
T ss_dssp             HHHHHHHHHTTCCB
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999888754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.78  E-value=4.3e-18  Score=121.36  Aligned_cols=109  Identities=16%  Similarity=0.126  Sum_probs=84.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCC--c------------cc-------ccCccceeEEEEEECCEEEEEEEcCCCCCccc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGE--I------------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP   76 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~--~------------~~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (181)
                      .+|+++|+.++|||||+.+++...  .            ..       ...|+......+.+.+..++++||||+.+|..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence            479999999999999999995311  0            00       11255566778899999999999999999999


Q ss_pred             chhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      .....++.+|++++|+|+.+.-..+. ...|.....    .++|.++++||+|..
T Consensus        83 e~~~al~~~D~avlvvda~~Gv~~~t-~~~~~~~~~----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          83 EIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             hhhhhhcccCceEEEeeccCCccchh-HHHHHhhhh----ccccccccccccccc
Confidence            99999999999999999986544433 333444433    479999999999964

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2.1e-19  Score=124.41  Aligned_cols=118  Identities=24%  Similarity=0.324  Sum_probs=83.8

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhc----cccccEEEEEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY----FQNTQGLIFVV   92 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~d~~i~v~   92 (181)
                      ..+|+++|++|||||||+|+|.++++.... +.......+...+..+.+||+||+..+...+..+    ...++.+++++
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~t-t~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~v   81 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMV   81 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBC-CCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCeE-EecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEE
Confidence            468999999999999999999988764322 2222333445567788999999998776655444    34578999999


Q ss_pred             ECCC-cccHHHHHHHHHHH---HcCCCCCCCeEEEEEeCCCCCCCCC
Q 030192           93 DSND-RDRVVEARDELHRM---LNEDELRDAVLLVFANKQDLPNAMN  135 (181)
Q Consensus        93 d~~~-~~s~~~~~~~~~~~---~~~~~~~~~piivv~nK~Dl~~~~~  135 (181)
                      |+.+ ..++.....++.+.   .......++|+++++||+|+.+...
T Consensus        82 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~  128 (209)
T d1nrjb_          82 DSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  128 (209)
T ss_dssp             ETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             EEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence            9764 55566665554333   2233336899999999999976543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.1e-18  Score=118.42  Aligned_cols=164  Identities=12%  Similarity=0.054  Sum_probs=91.3

Q ss_pred             HHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccc---cCcccee-EEEEEECCEEEEEEEcCCC-CCcc-------c
Q 030192            9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFN-VETVEYKNISFTVWDVGGQ-DKIR-------P   76 (181)
Q Consensus         9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~-~~~~~~~~~~~~i~D~~g~-~~~~-------~   76 (181)
                      +++++..+.++|+++|.+|+|||||+|++.+.+....   .++.... .......+......+.++. ....       .
T Consensus         8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (188)
T d1puia_           8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQR   87 (188)
T ss_dssp             GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHH
T ss_pred             hhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhh
Confidence            4678888999999999999999999999998775422   1221111 2222334444443333331 1110       0


Q ss_pred             c---hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-CcccCcc
Q 030192           77 L---WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL-HSLRQRH  152 (181)
Q Consensus        77 ~---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~  152 (181)
                      .   ........+.++.+.+....... ....++.....    ...++++++||+|+.+..........+.. .......
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~  162 (188)
T d1puia_          88 ALGEYLEKRQSLQGLVVLMDIRHPLKD-LDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD  162 (188)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred             hhhhhhhhhhheeEEEEeecccccchh-HHHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCC
Confidence            1   11112334555556666543332 23333333333    36789999999998875433222221110 0112235


Q ss_pred             eEEEEccccCCCChHHHHHHHHHHh
Q 030192          153 WYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       153 ~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      .+++.+||++|.|++++++.|.+.+
T Consensus       163 ~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         163 VQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999987654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=5.6e-18  Score=119.27  Aligned_cols=149  Identities=15%  Similarity=0.107  Sum_probs=100.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC----------------------Cc------------ccccCccceeEEEEEECC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG----------------------EI------------VTTIPTIGFNVETVEYKN   60 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~----------------------~~------------~~~~~~~~~~~~~~~~~~   60 (181)
                      +..++|+++|+.++|||||+.+|+..                      .+            .+..-|+......+...+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            44689999999999999999999531                      00            001225555667788899


Q ss_pred             EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCccc-----H-HHHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCC
Q 030192           61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR-----V-VEARDELHRMLNEDELRDA-VLLVFANKQDLPNA  133 (181)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-----~-~~~~~~~~~~~~~~~~~~~-piivv~nK~Dl~~~  133 (181)
                      ..++++|+||+.+|..........+|++|+|+|+....-     . ....+-+.....    .++ ++|+++||+|+.+.
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH----cCCCeEEEEEECCCCCCC
Confidence            999999999999999999999999999999999964210     0 012222222211    244 58899999998764


Q ss_pred             CC--H----hHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192          134 MN--A----AEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
Q Consensus       134 ~~--~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~  167 (181)
                      ..  .    +++...+....+....++++.+|+.+|.|+-
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            32  1    1222222212223345678899999998863

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.73  E-value=5.5e-18  Score=119.86  Aligned_cols=159  Identities=17%  Similarity=0.196  Sum_probs=90.4

Q ss_pred             HHHhhhcccccEEEEEcCCCCChHHHHhhHhcCC--cc--------------------------------cccCccceeE
Q 030192            8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNV   53 (181)
Q Consensus         8 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~--------------------------------~~~~~~~~~~   53 (181)
                      .++....+..++|+++|+.++|||||+.+|+..-  ..                                ....+.....
T Consensus        15 ~~~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~   94 (245)
T d1r5ba3          15 LLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR   94 (245)
T ss_dssp             THHHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C
T ss_pred             HHHHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccc
Confidence            3455666778899999999999999999994310  00                                0001111222


Q ss_pred             EEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccH-----H-HHHHHHHHHHcCCCCCCC-eEEEEEe
Q 030192           54 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV-----V-EARDELHRMLNEDELRDA-VLLVFAN  126 (181)
Q Consensus        54 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-----~-~~~~~~~~~~~~~~~~~~-piivv~n  126 (181)
                      ..+......+.+.|+||+..|..........+|++++|+|+....-.     . ...+.+.....    .++ ++++++|
T Consensus        95 ~~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~----~~i~~iiv~iN  170 (245)
T d1r5ba3          95 AYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVIN  170 (245)
T ss_dssp             CEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEE
T ss_pred             cccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH----cCCCeEEEEEE
Confidence            33455778899999999999999988888999999999999753100     0 11222211111    233 4889999


Q ss_pred             CCCCCCCCC----HhHHHhhhCCC-----cc-cCcceEEEEccccCCCChHHHH
Q 030192          127 KQDLPNAMN----AAEITDKLGLH-----SL-RQRHWYIQSTCATSGEGLYEGL  170 (181)
Q Consensus       127 K~Dl~~~~~----~~~~~~~~~~~-----~~-~~~~~~~~~~S~~~~~gv~~~~  170 (181)
                      |+|++....    .+++...+...     .. ....++++++||++|+|+.+++
T Consensus       171 KmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         171 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            999875331    22232222110     01 1235789999999999998754

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.72  E-value=1.6e-17  Score=116.23  Aligned_cols=149  Identities=19%  Similarity=0.229  Sum_probs=94.5

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCC---------------------------cc-----c--ccCccceeEEEEEECCEE
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGE---------------------------IV-----T--TIPTIGFNVETVEYKNIS   62 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~---------------------------~~-----~--~~~~~~~~~~~~~~~~~~   62 (181)
                      .++|+++|+.++|||||+.+|+...                           ..     +  ...+.......++..+..
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            5899999999999999999995310                           00     0  011333334456778899


Q ss_pred             EEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHH------HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-
Q 030192           63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV------EARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-  135 (181)
Q Consensus        63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-  135 (181)
                      ++++|+||+.+|........+-+|++++|+|+.+....+      ...+-+.-....   ...++|+++||+|+..+.. 
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~---~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSSTTC
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh---CCCceEEEEEcccCCCcccc
Confidence            999999999999999999999999999999997631111      111111111111   2356889999999875421 


Q ss_pred             H---hHHH----hhhCCCcccCcceEEEEccccCCCChHH
Q 030192          136 A---AEIT----DKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
Q Consensus       136 ~---~~~~----~~~~~~~~~~~~~~~~~~S~~~~~gv~~  168 (181)
                      .   +.+.    ..+..........+++++||..|.|+.+
T Consensus       160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            1   1111    1111112234567889999999999843

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.7e-15  Score=110.88  Aligned_cols=151  Identities=16%  Similarity=0.163  Sum_probs=90.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC------Cc--ccccCccceeE---------------------EEEE--------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTIGFNV---------------------ETVE--------   57 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~------~~--~~~~~~~~~~~---------------------~~~~--------   57 (181)
                      .+.+.|+|.|+||||||||+++|...      +.  ....|+....-                     ....        
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~  131 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  131 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence            46899999999999999999999631      21  11122211110                     0000        


Q ss_pred             ------------ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030192           58 ------------YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA  125 (181)
Q Consensus        58 ------------~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~  125 (181)
                                  ..++.+.+++|.|......   .+...+|.+++|.+....+..+.....+.++..         ++|+
T Consensus       132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~aD---------i~Vv  199 (327)
T d2p67a1         132 SQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLMEVAD---------LIVI  199 (327)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHHHCS---------EEEE
T ss_pred             hhhhhHHHHHHHhcCCCeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchhhhcccc---------EEEE
Confidence                        0234577777777644332   244569999999988766666555555555533         8999


Q ss_pred             eCCCCCCCCCHh----HHHhhhCC--CcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          126 NKQDLPNAMNAA----EITDKLGL--HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       126 nK~Dl~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      ||+|+.......    +....+..  .....+..+++.|||++|.|++++++.|.+..
T Consensus       200 NKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         200 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             EeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            999987643221    22222221  12234566899999999999999999987643

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=2.6e-15  Score=113.06  Aligned_cols=157  Identities=10%  Similarity=0.076  Sum_probs=89.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccc-----eeEEEEEE-CCEEEEEEEcCCCCCcccc-----hhhcc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-----FNVETVEY-KNISFTVWDVGGQDKIRPL-----WRHYF   82 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~-----~~~~~~~~-~~~~~~i~D~~g~~~~~~~-----~~~~~   82 (181)
                      +..++|+++|.+|+|||||+|+|.+...... ....+     .....+.. ...++.+|||||-......     ....+
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            4679999999999999999999998543211 11111     11122222 3345889999995432221     22234


Q ss_pred             ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC---------CCC----HhHHHhhhC--CCc
Q 030192           83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN---------AMN----AAEITDKLG--LHS  147 (181)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~---------~~~----~~~~~~~~~--~~~  147 (181)
                      ..+|.++++.|..    +......+...+..   .++|+++|.||+|...         ...    .+++++...  +..
T Consensus       134 ~~~d~~l~~~~~~----~~~~d~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~  206 (400)
T d1tq4a_         134 YEYDFFIIISATR----FKKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  206 (400)
T ss_dssp             GGCSEEEEEESSC----CCHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hcceEEEEecCCC----CCHHHHHHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHH
Confidence            5688888887643    22222223333333   4799999999999531         011    111211110  000


Q ss_pred             ccCcceEEEEccccC--CCChHHHHHHHHHHhh
Q 030192          148 LRQRHWYIQSTCATS--GEGLYEGLDWLSNNIA  178 (181)
Q Consensus       148 ~~~~~~~~~~~S~~~--~~gv~~~~~~i~~~~~  178 (181)
                      ..-...++|.+|..+  ..|++++.+.+.+.+.
T Consensus       207 ~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         207 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             cCCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence            011233577788765  4589999998887764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.56  E-value=4.1e-14  Score=100.50  Aligned_cols=116  Identities=9%  Similarity=0.060  Sum_probs=77.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcccc----cCccceeEEEEEECCEEEEEEEcCCCCCccc-------chh--hc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP-------LWR--HY   81 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~--~~   81 (181)
                      ...++|+++|.+|+|||||+|++++......    ..|...........+..+.++||||-.+...       ...  ..
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~  109 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  109 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHh
Confidence            4779999999999999999999998764321    2244455566677889999999999432111       111  11


Q ss_pred             cccccEEEEEEECCCcc-c--HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           82 FQNTQGLIFVVDSNDRD-R--VVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~-s--~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      ....|++++|++++... +  -......+...+...  .-.++++|.||+|...
T Consensus       110 ~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         110 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCC
T ss_pred             cCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh--hhhCEEEEEECcccCC
Confidence            23578999999886431 2  233334444444321  1257899999999865

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=2.3e-14  Score=105.08  Aligned_cols=111  Identities=19%  Similarity=0.140  Sum_probs=78.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC------------cccc-------cCccceeEEEEEE----------------CC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE------------IVTT-------IPTIGFNVETVEY----------------KN   60 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~------------~~~~-------~~~~~~~~~~~~~----------------~~   60 (181)
                      +-.+|+++|+.++|||||+++|+...            +...       .-|+......+..                ..
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            33469999999999999999996311            0000       1122222222221                35


Q ss_pred             EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192           61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  131 (181)
                      +.++++||||+.+|.......++-+|++++|+|+...-..+ ....|.....    .+.|+++++||+|..
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~q-T~~~~~~a~~----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQ-TETVLRQALG----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHH-HHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchh-HHHHHHHHHH----cCCCeEEEEECcccc
Confidence            67999999999999999999999999999999997654443 3334444444    479999999999964

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.53  E-value=8.1e-14  Score=101.74  Aligned_cols=151  Identities=13%  Similarity=0.140  Sum_probs=95.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC------c--ccccCcc-------------------c-eeEEE-E---------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE------I--VTTIPTI-------------------G-FNVET-V---------   56 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~------~--~~~~~~~-------------------~-~~~~~-~---------   56 (181)
                      .+.+.|+|.|+||+|||||++++....      .  ....|+.                   + ..+.+ .         
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            478899999999999999999996421      0  0000100                   0 01111 0         


Q ss_pred             -----------EECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030192           57 -----------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA  125 (181)
Q Consensus        57 -----------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~  125 (181)
                                 ...++.+.+++|.|.........   .-+|.+++|......+..+....-+.++..         ++|+
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~---~~~D~~v~v~~p~~GD~iQ~~k~gilE~aD---------i~vv  196 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSETAVA---DLTDFFLVLMLPGAGDELQGIKKGIFELAD---------MIAV  196 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH---TTSSEEEEEECSCC------CCTTHHHHCS---------EEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhh---cccceEEEEeeccchhhhhhhhhhHhhhhh---------eeeE
Confidence                       11357889999998765554433   459999999999877766655555554443         9999


Q ss_pred             eCCCCCCCCCHh-----HHHhhhCCC--cccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192          126 NKQDLPNAMNAA-----EITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
Q Consensus       126 nK~Dl~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~  177 (181)
                      ||+|+.+.....     +....+...  ....+..+++.+||++|.|++++++.|.+..
T Consensus       197 NKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         197 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             eccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            999987653222     122222222  2223566799999999999999999997654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.44  E-value=1.5e-14  Score=101.74  Aligned_cols=113  Identities=12%  Similarity=-0.018  Sum_probs=65.9

Q ss_pred             EEEEEEEcCCCCCcccchhhc---c--ccccEEEEEEECCCcccHHHHHHHH-H--HHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           61 ISFTVWDVGGQDKIRPLWRHY---F--QNTQGLIFVVDSNDRDRVVEARDEL-H--RMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~---~--~~~d~~i~v~d~~~~~s~~~~~~~~-~--~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      ..+.+.|+||+..+.......   .  ...+.+++++|+......+...... .  ....+   ...|.++++||+|+..
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~  171 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLS  171 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCC
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeecccccc
Confidence            458899999987653322111   1  2466889999986433322222211 1  11111   3578999999999886


Q ss_pred             CCCHhHHHh----------hhC--CCcc-------------cCcceEEEEccccCCCChHHHHHHHHHH
Q 030192          133 AMNAAEITD----------KLG--LHSL-------------RQRHWYIQSTCATSGEGLYEGLDWLSNN  176 (181)
Q Consensus       133 ~~~~~~~~~----------~~~--~~~~-------------~~~~~~~~~~S~~~~~gv~~~~~~i~~~  176 (181)
                      ......+..          ...  ....             ....++++++||++|+|+++++..+.+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            432222111          000  0000             0134578899999999999999988764

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.10  E-value=1.7e-10  Score=84.06  Aligned_cols=79  Identities=23%  Similarity=0.319  Sum_probs=47.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcc-ccc------CccceeEEEEE--------------------ECCEEEEEEEcCC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIV-TTI------PTIGFNVETVE--------------------YKNISFTVWDVGG   70 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~------~~~~~~~~~~~--------------------~~~~~~~i~D~~g   70 (181)
                      ++|+++|.||||||||+|++++.+.. ...      |..|......+                    .....++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            58999999999999999999886532 222      22333221111                    1225799999999


Q ss_pred             CCC-------cccchhhccccccEEEEEEECCC
Q 030192           71 QDK-------IRPLWRHYFQNTQGLIFVVDSND   96 (181)
Q Consensus        71 ~~~-------~~~~~~~~~~~~d~~i~v~d~~~   96 (181)
                      --.       ........++++|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            321       22223445578999999999863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.07  E-value=3.7e-10  Score=81.37  Aligned_cols=82  Identities=20%  Similarity=0.296  Sum_probs=57.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCc--ccccC--ccceeEEEEEEC-----------------CEEEEEEEcCCCC-
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQD-   72 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~--~~~~~~~~~~~~-----------------~~~~~i~D~~g~~-   72 (181)
                      ...++|+++|.||||||||+|++++...  ....|  |...+...+...                 ...+.+.|.||.- 
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            4679999999999999999999997643  23333  444444444332                 3578999999832 


Q ss_pred             ---C---cccchhhccccccEEEEEEECCC
Q 030192           73 ---K---IRPLWRHYFQNTQGLIFVVDSND   96 (181)
Q Consensus        73 ---~---~~~~~~~~~~~~d~~i~v~d~~~   96 (181)
                         +   ........++++|+++.|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence               1   12334555689999999999854

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.06  E-value=1.3e-10  Score=83.13  Aligned_cols=79  Identities=22%  Similarity=0.239  Sum_probs=52.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEEC-----------------CEEEEEEEcCCCCC---
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK-----------------NISFTVWDVGGQDK---   73 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~-----------------~~~~~i~D~~g~~~---   73 (181)
                      .++|++||.||||||||++++++.... ..  ..|...+...+...                 ...+.+.|+||--.   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999976643 11  22333333223322                 23588999999422   


Q ss_pred             ----cccchhhccccccEEEEEEECC
Q 030192           74 ----IRPLWRHYFQNTQGLIFVVDSN   95 (181)
Q Consensus        74 ----~~~~~~~~~~~~d~~i~v~d~~   95 (181)
                          ........+++||+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence                2223445568999999999873

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.05  E-value=3.9e-10  Score=81.56  Aligned_cols=68  Identities=21%  Similarity=0.255  Sum_probs=41.3

Q ss_pred             EEEEEEcCCCCC-------------cccchhhccccccEEEEEE-ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 030192           62 SFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVV-DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK  127 (181)
Q Consensus        62 ~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK  127 (181)
                      .+.++|+||-..             ...+...|+.+++.+++++ +......-+....+.... ..   ....+++|+||
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~-~~---~~~r~i~Vitk  207 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-DP---EGKRTIGVITK  207 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-CS---SCSSEEEEEEC
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh-Cc---CCCeEEEEEec
Confidence            578999999432             2245667788899877665 443322222233333333 22   34679999999


Q ss_pred             CCCCCC
Q 030192          128 QDLPNA  133 (181)
Q Consensus       128 ~Dl~~~  133 (181)
                      +|..+.
T Consensus       208 ~D~~~~  213 (306)
T d1jwyb_         208 LDLMDK  213 (306)
T ss_dssp             TTSSCS
T ss_pred             cccccc
Confidence            998654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=5.6e-10  Score=80.44  Aligned_cols=114  Identities=19%  Similarity=0.173  Sum_probs=68.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCc-c-cccCccc-eeEEEE------------------------------------
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEI-V-TTIPTIG-FNVETV------------------------------------   56 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~-~-~~~~~~~-~~~~~~------------------------------------   56 (181)
                      ...+|+|+|..++|||||+|++++..+ + ...|++. .....+                                    
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            345799999999999999999998774 2 2222221 111111                                    


Q ss_pred             ---------------EE-CCEEEEEEEcCCCCC-------------cccchhhccccccEEE-EEEECCCcccHHHHHHH
Q 030192           57 ---------------EY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLI-FVVDSNDRDRVVEARDE  106 (181)
Q Consensus        57 ---------------~~-~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~  106 (181)
                                     .. ....+.++|+||-..             ...+...|+.+++.++ +|.++....+......+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                           01 112478999999322             1233455666777555 56666544444444444


Q ss_pred             HHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192          107 LHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus       107 ~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      .... ..   ...++++|+||+|..+.
T Consensus       185 ~~~~-~~---~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         185 AKEV-DP---QGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHH-CT---TCSSEEEEEECGGGSCT
T ss_pred             HHHh-Cc---CCCceeeEEeccccccc
Confidence            3333 32   35679999999998764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.86  E-value=8.3e-10  Score=78.60  Aligned_cols=57  Identities=23%  Similarity=0.387  Sum_probs=37.5

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE--EEEEECCEEEEEEEcCCC
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQ   71 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~   71 (181)
                      ....++|+++|.||||||||+|++.+.+.....+..|.+-  ..+.. +-++.++||||-
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~-~~~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEEC-CCCeEEecCCCc
Confidence            3577999999999999999999999987655544444332  22222 345899999995

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=8.6e-08  Score=65.59  Aligned_cols=85  Identities=19%  Similarity=0.185  Sum_probs=57.5

Q ss_pred             cccccEEEEEEECCCccc-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           82 FQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      ..+.|.+++|+.+..|+- ...+..++.....    .++|.++|+||+|+.++...+.+.....   ....+++++.+|+
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~---~~~~~~~v~~vSa   80 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEE---IYSGLYPIVKTSA   80 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHH---HHTTTSCEEECCT
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhc---ccccceeEEEecc
Confidence            467999999999987654 3444444433333    5899999999999987543333332221   1122346889999


Q ss_pred             cCCCChHHHHHHH
Q 030192          161 TSGEGLYEGLDWL  173 (181)
Q Consensus       161 ~~~~gv~~~~~~i  173 (181)
                      +++.|++++...+
T Consensus        81 ~~~~g~~~L~~~l   93 (225)
T d1u0la2          81 KTGMGIEELKEYL   93 (225)
T ss_dssp             TTCTTHHHHHHHH
T ss_pred             ccchhHhhHHHHh
Confidence            9999999988766

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.43  E-value=1.6e-07  Score=64.17  Aligned_cols=55  Identities=20%  Similarity=0.243  Sum_probs=34.7

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccc---c--------CccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---I--------PTIGFNVETVEYKNISFTVWDVGGQDKI   74 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (181)
                      ....+++|++|+|||||+|+|.++....+   .        .|.......+..   ...++||||-..+
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~---gg~iiDTPG~r~~  160 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF---GGYVVDTPGFANL  160 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTT---SCEEESSCSSTTC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECC---CcEEEeCCccccc
Confidence            35779999999999999999987542211   0        122222222222   2489999996443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.42  E-value=7.8e-08  Score=68.17  Aligned_cols=90  Identities=12%  Similarity=0.062  Sum_probs=63.7

Q ss_pred             chhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEE
Q 030192           77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ  156 (181)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (181)
                      .....+..+|+++.|+|+-.|.+..  ...+..+++     ++|.|+|+||+|+.++...+++.+.+...     +...+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~--~~~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~-----~~~~i   75 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSR--NPMIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFENQ-----GIRSL   75 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTS--CHHHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHHTT-----TCCEE
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCC--CHHHHHHHc-----CCCeEEEEECccCCchHHHHHHHHHHHhc-----CCccc
Confidence            3455678999999999997664432  233444443     67999999999999876566666555432     23567


Q ss_pred             EccccCCCChHHHHHHHHHHhh
Q 030192          157 STCATSGEGLYEGLDWLSNNIA  178 (181)
Q Consensus       157 ~~S~~~~~gv~~~~~~i~~~~~  178 (181)
                      .+|+.++.|..++...+.+.+.
T Consensus        76 ~isa~~~~~~~~~~~~~~~~l~   97 (273)
T d1puja_          76 SINSVNGQGLNQIVPASKEILQ   97 (273)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHH
T ss_pred             eeecccCCCccccchhhhhhhh
Confidence            8999999999888777766544

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.36  E-value=2.5e-06  Score=57.63  Aligned_cols=124  Identities=18%  Similarity=0.160  Sum_probs=69.2

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC------Cc-----ccccC-----------ccceeEEEEE---------------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG------EI-----VTTIP-----------TIGFNVETVE---------------   57 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~------~~-----~~~~~-----------~~~~~~~~~~---------------   57 (181)
                      .+..-|+++|++||||||.+-+|...      +.     ..+.+           ..++.+....               
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~   83 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQA   83 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHH
Confidence            34567899999999999998877321      10     00000           1112111110               


Q ss_pred             --ECCEEEEEEEcCCCCCcccc----hhhcc--------ccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEE
Q 030192           58 --YKNISFTVWDVGGQDKIRPL----WRHYF--------QNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLL  122 (181)
Q Consensus        58 --~~~~~~~i~D~~g~~~~~~~----~~~~~--------~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pii  122 (181)
                        ..+..+.++||+|.......    ...+.        ...+-.++|+|++... ........+... .       +-=
T Consensus        84 ~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-~-------~~~  155 (207)
T d1okkd2          84 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-G-------LTG  155 (207)
T ss_dssp             HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-C-------CSE
T ss_pred             HHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-C-------Cce
Confidence              12467899999996554422    11111        2457889999997543 333333333332 2       126


Q ss_pred             EEEeCCCCCCCC-CHhHHHhhhCCC
Q 030192          123 VFANKQDLPNAM-NAAEITDKLGLH  146 (181)
Q Consensus       123 vv~nK~Dl~~~~-~~~~~~~~~~~~  146 (181)
                      +++||.|....- ..-.+....+++
T Consensus       156 lI~TKlDet~~~G~~l~~~~~~~~P  180 (207)
T d1okkd2         156 VIVTKLDGTAKGGVLIPIVRTLKVP  180 (207)
T ss_dssp             EEEECTTSSCCCTTHHHHHHHHCCC
T ss_pred             EEEeccCCCCCccHHHHHHHHHCCC
Confidence            789999986543 344555555554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.32  E-value=4.4e-08  Score=67.27  Aligned_cols=87  Identities=11%  Similarity=0.136  Sum_probs=58.2

Q ss_pred             cccccEEEEEEECCCccc-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192           82 FQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  160 (181)
                      ..+.|.+++|+++.+|+- ...+..++ -....   .+++.++|+||+|+.+....++....+ ...++..+++++.+|+
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~L-v~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~-~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFL-VLVEA---NDIQPIICITKMDLIEDQDTEDTIQAY-AEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHH-HHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHH-HHHHHHHTCCEEECCH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHH-HHHHH---cCCCEEEEEecccccccHHHHHHHHHH-HHHHhhccccceeeec
Confidence            368999999999987653 44444444 33333   578999999999998653332222211 1223344667899999


Q ss_pred             cCCCChHHHHHHH
Q 030192          161 TSGEGLYEGLDWL  173 (181)
Q Consensus       161 ~~~~gv~~~~~~i  173 (181)
                      +++.|++++..++
T Consensus        83 ~~~~gl~~L~~~l   95 (231)
T d1t9ha2          83 KDQDSLADIIPHF   95 (231)
T ss_dssp             HHHTTCTTTGGGG
T ss_pred             CChhHHHHHHHhh
Confidence            9999998877654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=6.1e-06  Score=56.37  Aligned_cols=66  Identities=15%  Similarity=0.204  Sum_probs=38.0

Q ss_pred             EEEEEEcCCCCCcccchhhc--------cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192           62 SFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  133 (181)
                      ...++++.|...-......+        .-..++++.|+|+............+...+....      ++++||+|+.+.
T Consensus        91 d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD------~ivlNK~Dl~~~  164 (222)
T d1nija1          91 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD------RILLTKTDVAGE  164 (222)
T ss_dssp             SEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCS------EEEEECTTTCSC
T ss_pred             ceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhCC------cccccccccccH
Confidence            34677777764433322111        1136889999999764433232233444444433      899999998753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.18  E-value=5.7e-06  Score=55.95  Aligned_cols=114  Identities=17%  Similarity=0.230  Sum_probs=57.8

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcC------Cc--c--ccc------------CccceeEEEE--------------
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLG------EI--V--TTI------------PTIGFNVETV--------------   56 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~------~~--~--~~~------------~~~~~~~~~~--------------   56 (181)
                      +.++..-|+++|++|+||||.+-+|...      +.  .  ...            ...++.+...              
T Consensus         8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~   87 (211)
T d1j8yf2           8 PDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV   87 (211)
T ss_dssp             CSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHH
Confidence            4455667888999999999998887421      00  0  000            0111111100              


Q ss_pred             ---EECCEEEEEEEcCCCCCccc------chhhcc--ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030192           57 ---EYKNISFTVWDVGGQDKIRP------LWRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA  125 (181)
Q Consensus        57 ---~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~  125 (181)
                         ...+..+.++||+|...+..      ....+.  -+.+-+++|+|++....-......+....      + +--+++
T Consensus        88 ~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lI~  160 (211)
T d1j8yf2          88 EKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS------K-IGTIII  160 (211)
T ss_dssp             HHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHC------T-TEEEEE
T ss_pred             HHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhccc------C-cceEEE
Confidence               02456899999999654432      112121  24678899999975433222222222221      1 124779


Q ss_pred             eCCCCCCC
Q 030192          126 NKQDLPNA  133 (181)
Q Consensus       126 nK~Dl~~~  133 (181)
                      ||.|....
T Consensus       161 TKlDet~~  168 (211)
T d1j8yf2         161 TKMDGTAK  168 (211)
T ss_dssp             ECTTSCSC
T ss_pred             ecccCCCc
Confidence            99997653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.15  E-value=2.6e-07  Score=63.40  Aligned_cols=25  Identities=16%  Similarity=0.333  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      .-..+++|++|+|||||+|+|.++.
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             cceEEEECCCCccHHHHHHhhccHh
Confidence            3456899999999999999998764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.13  E-value=4.1e-06  Score=56.53  Aligned_cols=81  Identities=11%  Similarity=0.091  Sum_probs=46.0

Q ss_pred             CCEEEEEEEcCCCCCcccc----hhhc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192           59 KNISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  132 (181)
                      .+..+.++||+|.......    +..+  ..+.+-+++|.|++..+.-......+...+.-       -=+++||.|...
T Consensus        91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~-------~~~I~TKlDe~~  163 (207)
T d1ls1a2          91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV-------TGLVLTKLDGDA  163 (207)
T ss_dssp             HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCC-------CEEEEECGGGCS
T ss_pred             ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCCC-------CeeEEeecCccc
Confidence            3467899999996554432    1112  13578999999997653333333333332221       248899999754


Q ss_pred             CC-CHhHHHhhhCCC
Q 030192          133 AM-NAAEITDKLGLH  146 (181)
Q Consensus       133 ~~-~~~~~~~~~~~~  146 (181)
                      .- ..-.+....+++
T Consensus       164 ~~G~~l~~~~~~~~P  178 (207)
T d1ls1a2         164 RGGAALSARHVTGKP  178 (207)
T ss_dssp             SCHHHHHHHHHHCCC
T ss_pred             cchHHHHHHHHHCCC
Confidence            32 222444445554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.12  E-value=2.5e-06  Score=57.86  Aligned_cols=127  Identities=19%  Similarity=0.162  Sum_probs=68.0

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcCCcc----------ccc------------CccceeEEEEE-------------
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV----------TTI------------PTIGFNVETVE-------------   57 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~----------~~~------------~~~~~~~~~~~-------------   57 (181)
                      ++.+..-|+++|++||||||.+-++...-..          ...            ...+..+....             
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~   86 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV   86 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHH
Confidence            4567778899999999999998777421100          000            01112221111             


Q ss_pred             ----ECCEEEEEEEcCCCCCcccc----hhhcc---c-----cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeE
Q 030192           58 ----YKNISFTVWDVGGQDKIRPL----WRHYF---Q-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL  121 (181)
Q Consensus        58 ----~~~~~~~i~D~~g~~~~~~~----~~~~~---~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi  121 (181)
                          ..+..+.++||+|.......    ...+.   .     ..+-.++|+|++..  .....+........     .+-
T Consensus        87 ~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-----~~~  159 (213)
T d1vmaa2          87 AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-----NVT  159 (213)
T ss_dssp             HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-----CCC
T ss_pred             HHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc-----CCc
Confidence                13567999999996544322    11111   1     25678999999643  22222222222111     123


Q ss_pred             EEEEeCCCCCCCC-CHhHHHhhhCCC
Q 030192          122 LVFANKQDLPNAM-NAAEITDKLGLH  146 (181)
Q Consensus       122 ivv~nK~Dl~~~~-~~~~~~~~~~~~  146 (181)
                      =+++||.|....- ..-.+....+++
T Consensus       160 ~lI~TKlDe~~~~G~~l~~~~~~~~P  185 (213)
T d1vmaa2         160 GIILTKLDGTAKGGITLAIARELGIP  185 (213)
T ss_dssp             EEEEECGGGCSCTTHHHHHHHHHCCC
T ss_pred             eEEEecccCCCcccHHHHHHHHHCCC
Confidence            6889999976533 223444445554

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.01  E-value=1.4e-06  Score=57.16  Aligned_cols=23  Identities=35%  Similarity=0.549  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      +||+++|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999763

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=2e-06  Score=58.19  Aligned_cols=124  Identities=21%  Similarity=0.251  Sum_probs=66.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC-----Ccc-----ccc------------CccceeEEEEE---------------
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG-----EIV-----TTI------------PTIGFNVETVE---------------   57 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~-----~~~-----~~~------------~~~~~~~~~~~---------------   57 (181)
                      +...-|+++|++||||||.+-+|...     ...     ...            ...++.+....               
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~   86 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA   86 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence            34456889999999999999888421     100     000            01122221110               


Q ss_pred             --ECCEEEEEEEcCCCCCcccc----h---hhccc-----cccEEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCCeEE
Q 030192           58 --YKNISFTVWDVGGQDKIRPL----W---RHYFQ-----NTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLL  122 (181)
Q Consensus        58 --~~~~~~~i~D~~g~~~~~~~----~---~~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~pii  122 (181)
                        ..+..+.++||+|.......    .   ....+     ..+-.++|+|++.. +........+...        .+-=
T Consensus        87 a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~--------~~~~  158 (211)
T d2qy9a2          87 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV--------GLTG  158 (211)
T ss_dssp             HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS--------CCCE
T ss_pred             HHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc--------CCce
Confidence              13467899999996443221    1   11112     25688999999643 2222222222211        1236


Q ss_pred             EEEeCCCCCCCC-CHhHHHhhhCCC
Q 030192          123 VFANKQDLPNAM-NAAEITDKLGLH  146 (181)
Q Consensus       123 vv~nK~Dl~~~~-~~~~~~~~~~~~  146 (181)
                      +++||.|....- ..-.+....+++
T Consensus       159 lIlTKlDe~~~~G~~l~~~~~~~~P  183 (211)
T d2qy9a2         159 ITLTKLDGTAKGGVIFSVADQFGIP  183 (211)
T ss_dssp             EEEECCTTCTTTTHHHHHHHHHCCC
T ss_pred             EEEeecCCCCCccHHHHHHHHHCCC
Confidence            889999986543 223444455554

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.81  E-value=6.3e-06  Score=53.59  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=22.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+.++|++.|++||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            5678999999999999999999964

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.77  E-value=5e-06  Score=54.54  Aligned_cols=23  Identities=22%  Similarity=0.462  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..+|+|.|++|||||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999965

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.75  E-value=6.5e-06  Score=53.38  Aligned_cols=23  Identities=35%  Similarity=0.362  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..+|+++|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999954

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=8.6e-06  Score=52.66  Aligned_cols=21  Identities=33%  Similarity=0.395  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      -++|+|.+|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999974

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.65  E-value=1.4e-05  Score=52.94  Aligned_cols=24  Identities=38%  Similarity=0.425  Sum_probs=21.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +.++|+++|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999999863

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.64  E-value=1.4e-05  Score=52.46  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++|+++|+|||||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998853

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.60  E-value=1.5e-05  Score=52.75  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +.++|++.|+|||||||+...|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998854

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.60  E-value=1.6e-05  Score=51.52  Aligned_cols=20  Identities=35%  Similarity=0.439  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChHHHHhhHhc
Q 030192           20 ILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~   39 (181)
                      +.|+|.+|||||||++++..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999974

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.60  E-value=1.7e-05  Score=52.14  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++|+++|+|||||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.59  E-value=2.1e-05  Score=52.19  Aligned_cols=25  Identities=20%  Similarity=0.391  Sum_probs=22.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+-++|+++|+|||||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            5678999999999999999999975

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.57  E-value=1.8e-05  Score=50.22  Aligned_cols=20  Identities=30%  Similarity=0.424  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChHHHHhhHhc
Q 030192           20 ILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~   39 (181)
                      |++.|+|||||||+.+++..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=9.2e-05  Score=52.02  Aligned_cols=58  Identities=21%  Similarity=0.193  Sum_probs=41.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCCcc-c-----ccCccceeEEEEE---ECCEEEEEEEcCCCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T-----TIPTIGFNVETVE---YKNISFTVWDVGGQD   72 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~-----~~~~~~~~~~~~~---~~~~~~~i~D~~g~~   72 (181)
                      +...-|.++|+.++|||+|+|.+.+.... .     ...|.|+-.....   ..+..+.++||.|..
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence            44568899999999999999999886632 1     1346665444333   256789999999954

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.56  E-value=2e-05  Score=52.38  Aligned_cols=25  Identities=20%  Similarity=0.209  Sum_probs=21.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+...|+++|+|||||||+..+|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4556789999999999999999964

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=2.2e-05  Score=51.53  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +++|+++|+|||||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            58999999999999999999964

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.56  E-value=2e-05  Score=51.73  Aligned_cols=22  Identities=45%  Similarity=0.579  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++|+++|+|||||||+...|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=2.3e-05  Score=51.39  Aligned_cols=22  Identities=36%  Similarity=0.445  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++|+++|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988853

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=6.1e-05  Score=50.01  Aligned_cols=37  Identities=19%  Similarity=0.239  Sum_probs=29.7

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +..+..-+..++.-+++++|+||+|||+++..+...-
T Consensus        31 i~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            4455566677788899999999999999999986543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.47  E-value=2.8e-05  Score=50.19  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      -|++.|++||||||+.+.|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999964

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=4.3e-05  Score=49.92  Aligned_cols=27  Identities=22%  Similarity=0.397  Sum_probs=22.9

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhc
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...+..-|+++|.|||||||+..++..
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345667899999999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.43  E-value=5.8e-05  Score=49.76  Aligned_cols=28  Identities=25%  Similarity=0.339  Sum_probs=23.5

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ......+-|+|.|++|||||||.+.|..
T Consensus        17 ~~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          17 IKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4445677899999999999999999953

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=8.1e-05  Score=51.99  Aligned_cols=37  Identities=24%  Similarity=0.303  Sum_probs=29.7

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +..+..-+..+..-+++++|+||+|||++++.+...-
T Consensus        27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            4455566667778899999999999999999986543

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.39  E-value=4.9e-05  Score=49.31  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=21.8

Q ss_pred             cccccEEEEEcCCCCChHHHHhhHh
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      +.+.+.|.++|.+||||||+.+.|.
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3567889999999999999988885

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=5.1e-05  Score=52.26  Aligned_cols=27  Identities=26%  Similarity=0.214  Sum_probs=23.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ++.-+++|+|++|||||||++.+.+-.
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            455689999999999999999998754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=4.3e-05  Score=49.74  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+|.+.|++|+|||||+..+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            3689999999999999999964

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=4.6e-05  Score=48.60  Aligned_cols=21  Identities=43%  Similarity=0.505  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .|.++|++||||||+...|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.34  E-value=0.00095  Score=42.55  Aligned_cols=67  Identities=24%  Similarity=0.284  Sum_probs=41.9

Q ss_pred             chhHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcc-c--ccCccceeEEEEEECCEEEEEEEcC
Q 030192            2 GLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVG   69 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~i~D~~   69 (181)
                      |+.|.+.+.+...+...-|.+.|+=|||||+|++.+...--. .  ..||... ...+...+..+.-+|.-
T Consensus        18 g~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l-~~~Y~~~~~~i~H~DlY   87 (158)
T d1htwa_          18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL-VEEYNIAGKMIYHFDLY   87 (158)
T ss_dssp             HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC-EEEEEETTEEEEEEECT
T ss_pred             HHHHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEE-EEeeccCCceEEEEEEe
Confidence            344555555555566778999999999999999999754322 2  2445443 22334455556656654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.31  E-value=5.7e-05  Score=49.29  Aligned_cols=20  Identities=20%  Similarity=0.238  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCChHHHHhhHh
Q 030192           19 RILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~   38 (181)
                      -|+|.|++||||||+++.|.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999884

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.28  E-value=6.3e-05  Score=54.09  Aligned_cols=26  Identities=19%  Similarity=0.167  Sum_probs=22.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ...+|+|.|++||||||+++.+...-
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             hCCCEEEEeeccccchHHHHHHhhhc
Confidence            44679999999999999999998543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.28  E-value=6.3e-05  Score=50.23  Aligned_cols=22  Identities=55%  Similarity=0.572  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .-|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999974

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=7.2e-05  Score=49.36  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHhhHhcC
Q 030192           20 ILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~   40 (181)
                      |+|+||+||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=8.2e-05  Score=49.18  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +.|+|+|+|||||||....+..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.24  E-value=8.2e-05  Score=51.25  Aligned_cols=27  Identities=26%  Similarity=0.239  Sum_probs=22.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ...-.++++|++|||||||++.+.+-.
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            345589999999999999999997643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.24  E-value=7.5e-05  Score=48.99  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHhhHhcC
Q 030192           19 RILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      -|+++||+||||||+++.|...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.22  E-value=8.6e-05  Score=51.48  Aligned_cols=27  Identities=22%  Similarity=0.207  Sum_probs=22.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +..-.++++|++|||||||++.+.+-.
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            345589999999999999999997643

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.22  E-value=7.5e-05  Score=48.18  Aligned_cols=21  Identities=38%  Similarity=0.586  Sum_probs=18.5

Q ss_pred             cEEEEEcCCCCChHHHHhhHh
Q 030192           18 MRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~   38 (181)
                      .+|+++|++||||||+.+.+.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            468999999999999988884

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.21  E-value=9.2e-05  Score=47.85  Aligned_cols=21  Identities=33%  Similarity=0.412  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      -|++.|++||||||+.+.+..
T Consensus         6 iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.21  E-value=0.00017  Score=48.93  Aligned_cols=28  Identities=25%  Similarity=0.218  Sum_probs=23.0

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ...+.-.+++.|++|+|||++++.+...
T Consensus        41 ~~~~~~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          41 KTGSMPHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             HHTCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3345557999999999999999998764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.20  E-value=0.00013  Score=50.55  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..-|++.|+||+||||+...+.+
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999999865

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=9.5e-05  Score=51.18  Aligned_cols=27  Identities=22%  Similarity=0.207  Sum_probs=23.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ++.=.++++|++|||||||++.+.+-.
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            455689999999999999999998644

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.20  E-value=8.9e-05  Score=50.58  Aligned_cols=27  Identities=22%  Similarity=0.313  Sum_probs=22.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ++.=.++++|++|||||||++.+.+-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCCC
Confidence            345578999999999999999887644

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.20  E-value=9e-05  Score=49.54  Aligned_cols=27  Identities=26%  Similarity=0.245  Sum_probs=22.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ++.-.++++|+.|||||||++.+.+-.
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            344568999999999999999998754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.18  E-value=9.1e-05  Score=47.66  Aligned_cols=20  Identities=30%  Similarity=0.580  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCChHHHHhhHh
Q 030192           19 RILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~   38 (181)
                      +|+++|++||||||+...+.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999988884

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.0001  Score=50.29  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=21.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+.=-++++|+.|||||||++.+.+-
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcC
Confidence            34457899999999999999999763

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00011  Score=48.24  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHhhHhcC
Q 030192           20 ILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~   40 (181)
                      |+++||+||||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999753

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.0001  Score=47.43  Aligned_cols=23  Identities=13%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..-+++.|++||||||+.+.|..
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34467799999999999999854

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.14  E-value=0.0002  Score=49.47  Aligned_cols=31  Identities=23%  Similarity=0.259  Sum_probs=23.9

Q ss_pred             HHhhhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192            9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus         9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++++.....-.+++.|++|+|||||++++..
T Consensus        21 l~~l~~~~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          21 IEKLKGLRAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             HHHHHHTCSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHhccCCEEEEEcCCCCcHHHHHHHHHH
Confidence            3444444556788999999999999999864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00012  Score=51.51  Aligned_cols=27  Identities=22%  Similarity=0.262  Sum_probs=23.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      .+.=.++++|+.|||||||++.+.+-.
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            345579999999999999999998754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.14  E-value=0.00014  Score=48.99  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +.+.|+|-|||||||||....|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            568899999999999999999954

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.00011  Score=48.78  Aligned_cols=25  Identities=32%  Similarity=0.255  Sum_probs=21.3

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+.--|+++|+|||||||+...|..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4455689999999999999999965

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.11  E-value=0.00012  Score=47.16  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      =|++.|++||||||+.+.|..
T Consensus         5 iI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467779999999999999864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.10  E-value=0.00013  Score=49.97  Aligned_cols=23  Identities=22%  Similarity=0.202  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHhhHhcCC
Q 030192           19 RILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      -++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            56799999999999999998754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.10  E-value=0.00014  Score=48.11  Aligned_cols=24  Identities=33%  Similarity=0.300  Sum_probs=20.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +..-|.++|+|||||||+...|..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345588999999999999999964

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.09  E-value=0.00011  Score=50.91  Aligned_cols=27  Identities=22%  Similarity=0.337  Sum_probs=22.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ++.-+++++|++|||||||++.+.+-.
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            455689999999999999999997643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00013  Score=50.07  Aligned_cols=27  Identities=26%  Similarity=0.295  Sum_probs=22.8

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      .+.--++++|++|||||||++.+.+-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            345578999999999999999998754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00013  Score=48.28  Aligned_cols=20  Identities=40%  Similarity=0.587  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChHHHHhhHhc
Q 030192           20 ILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~   39 (181)
                      |+|+||+||||+||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00013  Score=48.86  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcC
Q 030192           18 MRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .-|+++||+|||||||+++|...
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            45789999999999999999754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.09  E-value=0.00014  Score=49.86  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=22.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +.=.++++|+.|||||||++.+.+-.
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            44568999999999999999998754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.08  E-value=0.00026  Score=48.27  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=21.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ....+++.||||+||||+++.+.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=8e-05  Score=49.02  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=20.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +...|.++|.|||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456888999999999999999853

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.04  E-value=0.00016  Score=49.54  Aligned_cols=27  Identities=30%  Similarity=0.317  Sum_probs=22.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ++.=.++++|+.|||||||++.+.+-.
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            344578999999999999999998754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.02  E-value=0.00017  Score=47.71  Aligned_cols=28  Identities=25%  Similarity=0.304  Sum_probs=24.2

Q ss_pred             hhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192           12 LFAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ....+.+-|+|-|..||||||+++.|..
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            3456778999999999999999999964

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.02  E-value=0.00017  Score=49.54  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=22.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +.--++++|+.|+|||||++.+.+-.
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44568999999999999999998754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.01  E-value=0.00011  Score=49.98  Aligned_cols=27  Identities=22%  Similarity=0.192  Sum_probs=22.7

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ++.=-++++|+.|||||||++.+.+-.
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            344468999999999999999998754

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.00034  Score=47.42  Aligned_cols=28  Identities=21%  Similarity=0.265  Sum_probs=22.4

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ...+.-++++.|++|+||||+++.+.+.
T Consensus        29 ~~~~~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          29 KSANLPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             TCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HcCCCCeEEEECCCCCChHHHHHHHHHH
Confidence            3344456999999999999999999754

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.98  E-value=0.0003  Score=48.49  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...|++.|+||+|||++++.+.+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            34699999999999999999964

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00027  Score=50.30  Aligned_cols=31  Identities=23%  Similarity=0.173  Sum_probs=24.6

Q ss_pred             HHHhhhcccccEEEEEcCCCCChHHHHhhHh
Q 030192            8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus         8 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      ++.....+..+-|+|.|++|||||||.+.|.
T Consensus        71 fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          71 FLGTNGQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             HHTCC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             HhcccCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            4444455678999999999999999988874

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.97  E-value=0.00043  Score=47.67  Aligned_cols=25  Identities=32%  Similarity=0.307  Sum_probs=21.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...-.+++.|++|+|||++++.+..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00023  Score=47.70  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             ccEEEEEcCCCCChHHHHhhHh
Q 030192           17 EMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      .+-|+|.|++|||||||.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999884

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.00032  Score=47.78  Aligned_cols=24  Identities=25%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ...+++.||||+|||++.+.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            457999999999999999998653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.94  E-value=0.00028  Score=51.85  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=27.9

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +..+..-+..+..-++++||+||+|||++++.|..
T Consensus        31 i~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          31 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHH
Confidence            34555556677888899999999999999977754

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.94  E-value=0.00025  Score=48.59  Aligned_cols=27  Identities=26%  Similarity=0.182  Sum_probs=22.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGEI   42 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~~   42 (181)
                      ..--++++|+.|+|||||++.+.+-..
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            444679999999999999999987653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00014  Score=49.74  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=21.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..=-++++|+.|+|||||++.+.+-
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4457899999999999999999873

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.94  E-value=0.00022  Score=46.10  Aligned_cols=20  Identities=40%  Similarity=0.514  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChHHHHhhHh
Q 030192           19 RILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~   38 (181)
                      .|.++|++||||||+.+.+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            47889999999999998884

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.93  E-value=0.00021  Score=46.61  Aligned_cols=20  Identities=40%  Similarity=0.788  Sum_probs=17.0

Q ss_pred             EE-EEEcCCCCChHHHHhhHh
Q 030192           19 RI-LMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        19 ~i-~i~G~~~~GKSsli~~l~   38 (181)
                      || +|.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            45 567999999999999884

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.00043  Score=46.71  Aligned_cols=28  Identities=21%  Similarity=0.218  Sum_probs=22.3

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ...+.-++++.|++|+||||+++.+...
T Consensus        32 ~~~~~~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          32 KDGNMPHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             HSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HcCCCCeEEEECCCCCCchhhHHHHHHH
Confidence            3344457999999999999999888643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.92  E-value=0.00045  Score=46.29  Aligned_cols=31  Identities=29%  Similarity=0.482  Sum_probs=26.4

Q ss_pred             HHhhhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192            9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus         9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..+...++..-|.+.|.||||||||.+.|..
T Consensus        16 r~~~~~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          16 RTELRNQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             HHHHHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4456667889999999999999999999864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.91  E-value=0.00023  Score=49.36  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=22.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ++.=.++++|+.|||||||++.+.+-.
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            455578999999999999999998654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.89  E-value=0.00025  Score=49.11  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=22.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +.=-++++|+.|||||||++.+.+-.
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            34467999999999999999998754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00054  Score=46.21  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=21.5

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .+..++++.|++|+|||+++..+.+.
T Consensus        33 ~~~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          33 GKLPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             TCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCChhHHHHHHHHH
Confidence            33346999999999999999999754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.82  E-value=0.00015  Score=49.79  Aligned_cols=27  Identities=26%  Similarity=0.292  Sum_probs=23.1

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ++.=.++++|++|||||||++.+.+-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            345578999999999999999998754

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.79  E-value=0.0004  Score=45.66  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=21.0

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .++-|++.|.+||||||+.+.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998854

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00055  Score=46.89  Aligned_cols=25  Identities=20%  Similarity=0.090  Sum_probs=21.6

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ....+++.||||+||||+++.+.+.
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3357999999999999999999764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.63  E-value=0.001  Score=45.76  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...+++.|+||+|||++++.+.+
T Consensus        42 ~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHH
Confidence            34699999999999999999985

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.62  E-value=0.00089  Score=49.99  Aligned_cols=23  Identities=39%  Similarity=0.524  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .-+|+++||+|||||-|.++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999954

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.59  E-value=0.00052  Score=48.85  Aligned_cols=23  Identities=39%  Similarity=0.524  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .-.++++||||+|||.|.+++.+
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhh
Confidence            45789999999999999999865

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00059  Score=45.68  Aligned_cols=21  Identities=29%  Similarity=0.281  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      -|+|.|||||||+|+...+..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578889999999999999854

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.54  E-value=0.0005  Score=47.59  Aligned_cols=21  Identities=24%  Similarity=0.045  Sum_probs=17.5

Q ss_pred             EEEEcCCCCChHHHHhhHhcC
Q 030192           20 ILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~   40 (181)
                      +.+.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999999754

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.50  E-value=0.0012  Score=45.63  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..-+++.||||+|||++++.+.+.
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            456999999999999999999753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.00071  Score=46.23  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .-++++.|++|+||||++..+.+.
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            346999999999999999998753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.41  E-value=0.00098  Score=44.17  Aligned_cols=22  Identities=45%  Similarity=0.582  Sum_probs=19.0

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +-|+|-|..||||||+++.|..
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998863

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0016  Score=43.38  Aligned_cols=36  Identities=25%  Similarity=0.455  Sum_probs=26.6

Q ss_pred             hHHHHHHhhhcccccE-EEEEcCCCCChHHHHhhHhc
Q 030192            4 TFTKLFSRLFAKKEMR-ILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~-i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++.++.+.....+.-+ +++.|++|+|||+++..+..
T Consensus        10 ~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          10 DFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             HHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence            3455555555555444 99999999999999998754

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.0012  Score=46.21  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=20.5

Q ss_pred             cccccEEEEEcCCCCChHHHHhhH
Q 030192           14 AKKEMRILMVGLDAAGKTTILYKL   37 (181)
Q Consensus        14 ~~~~~~i~i~G~~~~GKSsli~~l   37 (181)
                      +++.+-|+|.|.+|||||||...+
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHH
Confidence            356788999999999999998766

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.25  E-value=0.0018  Score=46.94  Aligned_cols=24  Identities=33%  Similarity=0.241  Sum_probs=20.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +.--+++.||||+|||+|...+.+
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHH
Confidence            334789999999999999998854

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0011  Score=45.76  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ...+++.||||+|||++++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            34699999999999999999974

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0015  Score=43.16  Aligned_cols=24  Identities=29%  Similarity=0.178  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .--+.|.|+||+|||+|+..+..+
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHH
Confidence            345789999999999999888643

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0017  Score=43.30  Aligned_cols=22  Identities=18%  Similarity=0.208  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +-|++.|..||||||+.+.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4588999999999999998854

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.05  E-value=0.0024  Score=44.27  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=21.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ....|++.|++|+|||+|++++.+.
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHH
Confidence            3457999999999999999999653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0021  Score=42.69  Aligned_cols=22  Identities=36%  Similarity=0.386  Sum_probs=18.9

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .-|+|-|..||||||+++.|..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3488899999999999999863

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.02  E-value=0.0012  Score=46.30  Aligned_cols=24  Identities=29%  Similarity=0.355  Sum_probs=17.4

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHh
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      ++..-|+|.|.+||||||+.++|.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHH
Confidence            345569999999999999999874

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=96.00  E-value=0.0025  Score=42.15  Aligned_cols=34  Identities=12%  Similarity=0.151  Sum_probs=24.8

Q ss_pred             hHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192            4 TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +|..++.+.+  ++-.+++.|++++|||.|++.+..
T Consensus        42 ~l~~~l~~~P--Kkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          42 ALKSFLKGTP--KKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             HHHHHHHTCT--TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             HHHHHHcCCC--CceEEEEECCCCccHHHHHHHHHH
Confidence            3444554433  446789999999999999998864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.95  E-value=0.0028  Score=42.07  Aligned_cols=22  Identities=27%  Similarity=0.170  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +-|++.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998854

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0021  Score=43.40  Aligned_cols=22  Identities=41%  Similarity=0.412  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..|+|-|+.||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0028  Score=42.26  Aligned_cols=24  Identities=38%  Similarity=0.436  Sum_probs=19.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +..=|+|-|..||||||+++.|..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHH
Confidence            345588889999999998888753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0041  Score=42.22  Aligned_cols=21  Identities=33%  Similarity=0.368  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+++.|++|+|||++++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999998754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.83  E-value=0.0024  Score=43.10  Aligned_cols=35  Identities=14%  Similarity=0.119  Sum_probs=24.1

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      |..++..-.+ ..--+.|.|+||+|||+|+.++...
T Consensus        23 LD~ll~GGi~-~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          23 LDTLLGGGVE-TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             HHHHHTSSEE-SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             HHhhhCCCCc-CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3444443222 3346789999999999999988643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.77  E-value=0.0014  Score=46.93  Aligned_cols=21  Identities=29%  Similarity=0.381  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCChHHHHhhHh
Q 030192           18 MRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~   38 (181)
                      -++++.|+||+|||+|.+++.
T Consensus        29 h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHH
Confidence            479999999999999999885

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.77  E-value=0.0045  Score=45.47  Aligned_cols=31  Identities=32%  Similarity=0.398  Sum_probs=24.2

Q ss_pred             HhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      .++.....=-|++.|++||||||.+..++..
T Consensus       151 ~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         151 RRLIKRPHGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             HHHHTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             HHHHhhhhceEEEEcCCCCCccHHHHHHhhh
Confidence            4444455556899999999999999999763

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.00039  Score=45.68  Aligned_cols=18  Identities=28%  Similarity=0.399  Sum_probs=16.3

Q ss_pred             EEEcCCCCChHHHHhhHh
Q 030192           21 LMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        21 ~i~G~~~~GKSsli~~l~   38 (181)
                      +|+|+.|||||||++++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999994

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.74  E-value=0.0055  Score=42.59  Aligned_cols=26  Identities=15%  Similarity=0.201  Sum_probs=21.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ....-|++.|..|+|||||...+.+.
T Consensus        42 ~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          42 LDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            44567889999999999999988653

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.0039  Score=44.29  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .++++||+|+|||.|...+..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            689999999999999999853

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.69  E-value=0.002  Score=45.29  Aligned_cols=17  Identities=29%  Similarity=0.608  Sum_probs=16.0

Q ss_pred             EEEcCCCCChHHHHhhH
Q 030192           21 LMVGLDAAGKTTILYKL   37 (181)
Q Consensus        21 ~i~G~~~~GKSsli~~l   37 (181)
                      +++|+.|||||++++++
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            78999999999999888

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.64  E-value=0.0035  Score=40.60  Aligned_cols=26  Identities=19%  Similarity=0.280  Sum_probs=21.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ...-|++.|++|+||||+.-.+....
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            34568999999999999998887543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.63  E-value=0.0037  Score=40.51  Aligned_cols=26  Identities=19%  Similarity=0.247  Sum_probs=21.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ...-|+|.|++|+|||++.-.|....
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            34568999999999999999887543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.63  E-value=0.0032  Score=42.68  Aligned_cols=22  Identities=23%  Similarity=0.203  Sum_probs=18.9

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      --++|.|+||+|||+|.-++..
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            3568999999999999988864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.62  E-value=0.0035  Score=45.46  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHh
Q 030192           16 KEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      ..-+++++||+|+|||-+.++|.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHH
Confidence            45679999999999999999885

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.48  E-value=0.0039  Score=42.11  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      +.--+++.|+||+|||+|+.++..+
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3456689999999999999888543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0039  Score=42.12  Aligned_cols=22  Identities=32%  Similarity=0.320  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChHHHHhhHhc
Q 030192           18 MRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .-|+|-|..||||||+++.|..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3588999999999999999964

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.33  E-value=0.0039  Score=45.55  Aligned_cols=21  Identities=14%  Similarity=0.488  Sum_probs=17.8

Q ss_pred             cccEEEEEcCCCCChHHHHhhH
Q 030192           16 KEMRILMVGLDAAGKTTILYKL   37 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l   37 (181)
                      ..++ +|+|+.|||||+++.++
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHH
Confidence            3454 58899999999999997

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.24  E-value=0.0052  Score=41.33  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=19.4

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .--++|.|+||+|||+|+..+..
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            34578999999999999998854

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.24  E-value=0.0058  Score=39.28  Aligned_cols=26  Identities=19%  Similarity=0.241  Sum_probs=21.1

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      ...-|++.|++|+||||+.-.+....
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            34568999999999999988876543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.027  Score=38.70  Aligned_cols=76  Identities=12%  Similarity=0.058  Sum_probs=43.2

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   97 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (181)
                      --+.+.|++++|||+|+-.+......               .+....++|+.+.-........-.. .|-++ ++.   +
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~q~---------------~g~~~vyidtE~~~~~~~a~~~Gvd-~d~v~-~~~---~  114 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAAQR---------------EGKTCAFIDAEHALDPIYARKLGVD-IDNLL-CSQ---P  114 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHH---------------TTCCEEEEESSCCCCHHHHHHTTCC-GGGCE-EEC---C
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHc---------------CCCEEEEEccccccCHHHHHHhCCC-HHHEE-Eec---C
Confidence            45689999999999998877643321               1223467888885443322222222 33333 333   3


Q ss_pred             ccHHHHHHHHHHHHcC
Q 030192           98 DRVVEARDELHRMLNE  113 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~  113 (181)
                      .+.++..+++..+...
T Consensus       115 ~~~E~~~~~i~~l~~~  130 (263)
T d1u94a1         115 DTGEQALEICDALARS  130 (263)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            4556666666665553

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.05  E-value=0.0063  Score=40.63  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChHHHHhhHhcCC
Q 030192           20 ILMVGLDAAGKTTILYKLKLGE   41 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~~   41 (181)
                      +.+.|++|+|||.|++.+.+..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            8899999999999999997643

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.02  E-value=0.0051  Score=43.96  Aligned_cols=26  Identities=27%  Similarity=0.222  Sum_probs=22.6

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ...++|.|-|.-|+||||+++.+...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0066  Score=41.02  Aligned_cols=23  Identities=22%  Similarity=0.062  Sum_probs=19.7

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .--+.|.|+||+|||+|.-++..
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34679999999999999998864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.86  E-value=0.0078  Score=40.12  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=18.5

Q ss_pred             cccEEEEEcCCCCChHHHHhhHh
Q 030192           16 KEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      ..--+.|.|+||+|||+|+.++.
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            34566888999999999987764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.85  E-value=0.0084  Score=42.84  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=21.7

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ..++|.|-|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            3578999999999999999999753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.83  E-value=0.0081  Score=41.44  Aligned_cols=20  Identities=20%  Similarity=0.285  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChHHHHhhHh
Q 030192           19 RILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~   38 (181)
                      -+++.|+||+|||+|+..+.
T Consensus        37 l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46899999999999987775

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.80  E-value=0.087  Score=36.22  Aligned_cols=85  Identities=16%  Similarity=0.077  Sum_probs=48.1

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCC
Q 030192           17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   96 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   96 (181)
                      .--+.+.|++++|||+|+-.+......               .+....++|+.+.-+.......... .|-+ +++.   
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~~~q~---------------~g~~~vyIDtE~~~~~e~a~~~GvD-~d~i-l~~~---  119 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVANAQA---------------AGGVAAFIDAEHALDPDYAKKLGVD-TDSL-LVSQ---  119 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHHHHHH---------------TTCEEEEEESSCCCCHHHHHHHTCC-GGGC-EEEC---
T ss_pred             ceeEEEecCCCcHHHHHHHHHHHHHhc---------------CCCEEEEEECCccCCHHHHHHhCCC-HHHe-EEec---
Confidence            345689999999999998777532211               1234577899985543333222222 3333 3344   


Q ss_pred             cccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030192           97 RDRVVEARDELHRMLNEDELRDAVLLVFA  125 (181)
Q Consensus        97 ~~s~~~~~~~~~~~~~~~~~~~~piivv~  125 (181)
                      +.+.++..+....+...    +.+.++|+
T Consensus       120 ~~~~E~~~~~~~~l~~~----~~~~liIi  144 (269)
T d1mo6a1         120 PDTGEQALEIADMLIRS----GALDIVVI  144 (269)
T ss_dssp             CSSHHHHHHHHHHHHHT----TCEEEEEE
T ss_pred             CCCHHHHHHHHHHHHhc----CCCCEEEE
Confidence            34556666666666553    44455554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.78  E-value=0.01  Score=39.46  Aligned_cols=22  Identities=45%  Similarity=0.445  Sum_probs=19.2

Q ss_pred             ccEEEEEcCCCCChHHHHhhHh
Q 030192           17 EMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      ..=|+|-|..||||||+++.|.
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHH
Confidence            4558999999999999998885

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.73  E-value=0.009  Score=42.41  Aligned_cols=20  Identities=25%  Similarity=0.458  Sum_probs=17.0

Q ss_pred             EEEEcCCCCChHHHHhhHhc
Q 030192           20 ILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~   39 (181)
                      +++.|+||+|||.|.+.+.+
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            44579999999999999964

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.0082  Score=44.15  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=19.4

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ..+++|+|.+|+|||+++..+..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            35799999999999999877753

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.56  E-value=0.016  Score=40.00  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=21.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .+.--+.+.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            3456788899999999999999864

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.48  E-value=0.013  Score=35.26  Aligned_cols=26  Identities=12%  Similarity=0.095  Sum_probs=23.1

Q ss_pred             hcccccEEEEEcCCCCChHHHHhhHh
Q 030192           13 FAKKEMRILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        13 ~~~~~~~i~i~G~~~~GKSsli~~l~   38 (181)
                      ..++.+.|.+-|..|+|||++.+.|.
T Consensus         2 r~kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           2 RPKQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GGGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             CCccceEEEEeCCCCCCHHHHHHHHH
Confidence            35788999999999999999998884

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.44  E-value=0.011  Score=39.85  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      -|++.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998854

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.41  E-value=0.0091  Score=42.55  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCChHHHHhhHhc
Q 030192           17 EMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .++|.|-|.-|+||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            46799999999999999999964

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.19  E-value=0.1  Score=35.77  Aligned_cols=76  Identities=14%  Similarity=0.052  Sum_probs=43.8

Q ss_pred             cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192           18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   97 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (181)
                      .-+.+.|++++|||+|+-.+......               .+..+.++|+.+.-+.......-.. .|-++ ++.   +
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~aqk---------------~g~~v~yiDtE~~~~~~~a~~~Gvd-~d~i~-~~~---~  117 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQAQK---------------AGGTCAFIDAEHALDPVYARALGVN-TDELL-VSQ---P  117 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHH---------------TTCCEEEEESSCCCCHHHHHHTTCC-GGGCE-EEC---C
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHh---------------CCCEEEEEECCccCCHHHHHHhCCC-chhEE-EEc---C
Confidence            35689999999999999887643221               1223567899875443322222222 33332 333   4


Q ss_pred             ccHHHHHHHHHHHHcC
Q 030192           98 DRVVEARDELHRMLNE  113 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~  113 (181)
                      .+.++..+.+..+...
T Consensus       118 ~~~E~~~~~~~~l~~~  133 (268)
T d1xp8a1         118 DNGEQALEIMELLVRS  133 (268)
T ss_dssp             SSHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            4566666666666554

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.12  E-value=0.009  Score=41.59  Aligned_cols=19  Identities=26%  Similarity=0.375  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCChHHH-HhhH
Q 030192           19 RILMVGLDAAGKTTI-LYKL   37 (181)
Q Consensus        19 ~i~i~G~~~~GKSsl-i~~l   37 (181)
                      .++|.|.||+|||+. ++++
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHH
Confidence            478999999999975 5543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.95  E-value=0.02  Score=40.44  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .++++|++|+|||.+...+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578889999999999888853

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.016  Score=39.79  Aligned_cols=20  Identities=25%  Similarity=0.285  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChHHHHhhHh
Q 030192           19 RILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~   38 (181)
                      -.++.|++|+|||+|+-.+.
T Consensus        31 ~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46799999999999988774

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.82  E-value=0.014  Score=40.98  Aligned_cols=19  Identities=21%  Similarity=0.433  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCChHHH-HhhH
Q 030192           19 RILMVGLDAAGKTTI-LYKL   37 (181)
Q Consensus        19 ~i~i~G~~~~GKSsl-i~~l   37 (181)
                      .++|.|.+||||||. ++++
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri   45 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRI   45 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHH
Confidence            488999999999965 5543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.031  Score=38.92  Aligned_cols=26  Identities=31%  Similarity=0.363  Sum_probs=21.9

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      -+.=+++|+|++|+|||+|+..+..+
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            35568999999999999999888653

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=92.82  E-value=0.048  Score=36.72  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=26.8

Q ss_pred             hHHHHHHhhhcccccEEEEEcCCCCChHHHHhhH
Q 030192            4 TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL   37 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l   37 (181)
                      ++..+.+++...+....++.|++|||||-+.-+.
T Consensus        63 ~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a   96 (233)
T d2eyqa3          63 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA   96 (233)
T ss_dssp             HHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHH
T ss_pred             HHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHH
Confidence            4456677777788899999999999999764444

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.78  E-value=0.033  Score=38.28  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=27.4

Q ss_pred             hHHHHHHhhhcccccEEEEEcCCCCChHHHHhhH
Q 030192            4 TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL   37 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l   37 (181)
                      ++..+.+++......+-++.|++|||||-..-..
T Consensus        91 ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a  124 (264)
T d1gm5a3          91 AHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLA  124 (264)
T ss_dssp             HHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHH
T ss_pred             HHHHHHHHhhccCcceeeeeccccccccHHHHHH
Confidence            5566777888888899999999999999764433

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.54  E-value=0.067  Score=36.27  Aligned_cols=35  Identities=14%  Similarity=0.304  Sum_probs=24.6

Q ss_pred             HHHHHHhhhc--ccccEEEEEcCCCCChHHHHhhHhc
Q 030192            5 FTKLFSRLFA--KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus         5 ~~~~~~~~~~--~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      ++.++.++..  ....-|+|.|++|+||+.+.+.+-.
T Consensus         9 ~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2           9 MKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence            3344444332  4556789999999999998888854

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.51  E-value=0.17  Score=33.35  Aligned_cols=71  Identities=7%  Similarity=0.029  Sum_probs=46.4

Q ss_pred             CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCCHh
Q 030192           60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMNAA  137 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~~  137 (181)
                      .+.+.++|+++....  .....+..+|.++++...+ ..++....+....+.+    .+.|++ +|+|+.|..+....+
T Consensus       111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~~~~~  182 (237)
T d1g3qa_         111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDRDIPP  182 (237)
T ss_dssp             GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTTCCCH
T ss_pred             cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhh----hhhhhhhhhhcccccccchhhh
Confidence            467999999986543  2344567799999999875 4455555554433332    456765 788999876544333

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.01  E-value=0.044  Score=39.38  Aligned_cols=20  Identities=35%  Similarity=0.351  Sum_probs=16.4

Q ss_pred             cEEEEEcCCCCChHHHHhhH
Q 030192           18 MRILMVGLDAAGKTTILYKL   37 (181)
Q Consensus        18 ~~i~i~G~~~~GKSsli~~l   37 (181)
                      --.+|.|+||+|||+++..+
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHH
Confidence            46788999999999987553

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.76  E-value=0.15  Score=34.73  Aligned_cols=33  Identities=21%  Similarity=0.372  Sum_probs=22.0

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHHhhH
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL   37 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l   37 (181)
                      |+.....+......-|++.|..|+||||+.-.|
T Consensus         8 ~~~~~~~~~~~~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2           8 LSALVDDIARNEHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             HHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHH
T ss_pred             HHHHHHHhhcCCCEEEEEECCCCCCHHHHHHHH
Confidence            344445555455455555699999999986665

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.16  E-value=0.091  Score=31.71  Aligned_cols=20  Identities=15%  Similarity=0.046  Sum_probs=15.7

Q ss_pred             EEEEEcCCCCChHHHHhhHh
Q 030192           19 RILMVGLDAAGKTTILYKLK   38 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~   38 (181)
                      ..++.+++|+|||.++-.+.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            45779999999998875553

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.02  E-value=0.098  Score=36.05  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=20.3

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +.=|++++|.+|+|||+|+-.+..
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHH
Confidence            445899999999999999888854

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=89.77  E-value=0.06  Score=32.30  Aligned_cols=18  Identities=39%  Similarity=0.335  Sum_probs=14.7

Q ss_pred             ccccEEEEEcCCCCChHH
Q 030192           15 KKEMRILMVGLDAAGKTT   32 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSs   32 (181)
                      ++.-++++.+++|+|||.
T Consensus         5 ~~~~~~il~~~tGsGKT~   22 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTR   22 (140)
T ss_dssp             STTCEEEECCCTTSSTTT
T ss_pred             HcCCcEEEEcCCCCChhH
Confidence            445678889999999993

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.76  E-value=0.13  Score=34.46  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHhhHhc
Q 030192           19 RILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli~~l~~   39 (181)
                      -+++.|+..+|||++++++..
T Consensus        43 ~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          43 MLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeccCchhhHHHHHHHHH
Confidence            468999999999999999843

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.14  E-value=0.27  Score=31.92  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=22.0

Q ss_pred             ccccEEEEEcCCCCChHHHHhhHhc
Q 030192           15 KKEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        15 ~~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      .....+++-|++|+||+++...+..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            4677999999999999999988864

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.00  E-value=0.16  Score=33.87  Aligned_cols=20  Identities=40%  Similarity=0.644  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChHHHHhhHhc
Q 030192           20 ILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~   39 (181)
                      +++.|+..+|||++++++.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            68999999999999999843

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=87.54  E-value=0.18  Score=34.13  Aligned_cols=86  Identities=12%  Similarity=0.093  Sum_probs=44.6

Q ss_pred             CEEEEEEEcCCCCCccc-chhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCC-CH
Q 030192           60 NISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAM-NA  136 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~-~~  136 (181)
                      .+.+.++|+|+...... ........+|.++++.+.. ..++.........+.......+.+ .-++.|+.+..... ..
T Consensus       115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~~~  193 (269)
T d1cp2a_         115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELL  193 (269)
T ss_dssp             TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHH
T ss_pred             cCCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCccchh
Confidence            46799999987543322 2222334588888887764 444444333332222111112333 34778998876532 23


Q ss_pred             hHHHhhhCCC
Q 030192          137 AEITDKLGLH  146 (181)
Q Consensus       137 ~~~~~~~~~~  146 (181)
                      +++.+.++..
T Consensus       194 ~~~~~~~~~~  203 (269)
T d1cp2a_         194 DAFAKELGSQ  203 (269)
T ss_dssp             HHHHHHHTCC
T ss_pred             hhhHhhcCCe
Confidence            3455555543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.27  E-value=0.26  Score=31.56  Aligned_cols=21  Identities=29%  Similarity=0.227  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChHHHHhhHhcC
Q 030192           20 ILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        20 i~i~G~~~~GKSsli~~l~~~   40 (181)
                      ++|.|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998743

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.11  E-value=0.23  Score=31.84  Aligned_cols=15  Identities=40%  Similarity=0.372  Sum_probs=13.0

Q ss_pred             EEEEEcCCCCChHHH
Q 030192           19 RILMVGLDAAGKTTI   33 (181)
Q Consensus        19 ~i~i~G~~~~GKSsl   33 (181)
                      ++++++++|+|||.+
T Consensus        25 n~lv~~pTGsGKT~i   39 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLI   39 (200)
T ss_dssp             CEEEECCTTSCHHHH
T ss_pred             CeEEEeCCCCcHHHH
Confidence            578999999999964

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.83  E-value=0.19  Score=34.73  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=20.4

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhcC
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKLG   40 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~~   40 (181)
                      +.=|++++|.+|+|||+|+..+..+
T Consensus        67 ~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          67 RGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             TTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCEEEeecCCCCChHHHHHHHHHh
Confidence            4558899999999999998777543

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=85.15  E-value=0.27  Score=29.99  Aligned_cols=18  Identities=33%  Similarity=0.554  Sum_probs=14.8

Q ss_pred             EEEcCCCCChHH-HHhhHh
Q 030192           21 LMVGLDAAGKTT-ILYKLK   38 (181)
Q Consensus        21 ~i~G~~~~GKSs-li~~l~   38 (181)
                      +++||=.||||| |++++-
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            578999999998 677763

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=84.79  E-value=0.21  Score=34.93  Aligned_cols=15  Identities=40%  Similarity=0.676  Sum_probs=13.3

Q ss_pred             EEEEcCCCCChHHHH
Q 030192           20 ILMVGLDAAGKTTIL   34 (181)
Q Consensus        20 i~i~G~~~~GKSsli   34 (181)
                      -+++|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (313)
T d2olra1          17 AVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            379999999999975

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=84.00  E-value=0.22  Score=34.29  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=19.2

Q ss_pred             cccEEEEEcCCCCChHHHHhhHhc
Q 030192           16 KEMRILMVGLDAAGKTTILYKLKL   39 (181)
Q Consensus        16 ~~~~i~i~G~~~~GKSsli~~l~~   39 (181)
                      +.=|++++|.+|+|||+|+..+..
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             CCceEeeccCCCCChHHHHHHHHh
Confidence            344789999999999999876543

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.75  E-value=0.52  Score=32.01  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=16.9

Q ss_pred             ccEEEEEcCCCCChHHHHhhH
Q 030192           17 EMRILMVGLDAAGKTTILYKL   37 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsli~~l   37 (181)
                      ..-|.+.|..|+||||+.-.+
T Consensus         8 p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEEECCCcChHHHHHHHH
Confidence            445678999999999976666

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=83.75  E-value=0.37  Score=31.10  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=16.8

Q ss_pred             cEEEEEcC-CCCChHHHHhhH
Q 030192           18 MRILMVGL-DAAGKTTILYKL   37 (181)
Q Consensus        18 ~~i~i~G~-~~~GKSsli~~l   37 (181)
                      .++.|.|- +|+||||+.-.|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHH
Confidence            47889999 599999997776

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=83.74  E-value=0.23  Score=34.77  Aligned_cols=16  Identities=38%  Similarity=0.594  Sum_probs=13.9

Q ss_pred             EEEEcCCCCChHHHHh
Q 030192           20 ILMVGLDAAGKTTILY   35 (181)
Q Consensus        20 i~i~G~~~~GKSsli~   35 (181)
                      -++.|.+|+|||||-.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            5899999999999753

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.86  E-value=0.28  Score=34.45  Aligned_cols=16  Identities=38%  Similarity=0.596  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCChHHHH
Q 030192           19 RILMVGLDAAGKTTIL   34 (181)
Q Consensus        19 ~i~i~G~~~~GKSsli   34 (181)
                      .-+++|.+|+|||||-
T Consensus        16 ~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          16 VTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            3479999999999986

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.15  E-value=0.65  Score=32.44  Aligned_cols=30  Identities=20%  Similarity=0.303  Sum_probs=24.7

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHH
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTIL   34 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli   34 (181)
                      ..+++..+..-....|+.-|.+|||||-.+
T Consensus        64 ~~~lv~~~l~G~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          64 AKKIVKDVLEGYNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             THHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred             HHHHHHHHHcCCCcceeeecccCCCCceec
Confidence            346677777788899999999999999654

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.61  E-value=0.16  Score=32.93  Aligned_cols=17  Identities=35%  Similarity=0.405  Sum_probs=14.3

Q ss_pred             ccEEEEEcCCCCChHHH
Q 030192           17 EMRILMVGLDAAGKTTI   33 (181)
Q Consensus        17 ~~~i~i~G~~~~GKSsl   33 (181)
                      .-++++.+++|+|||..
T Consensus        40 ~~~~il~apTGsGKT~~   56 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLL   56 (202)
T ss_dssp             CSCEEEECSSHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHH
Confidence            34789999999999964

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.14  E-value=0.51  Score=32.17  Aligned_cols=86  Identities=14%  Similarity=0.140  Sum_probs=42.7

Q ss_pred             CEEEEEEEcCCCCCcccchhh-ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCCCCCCC-CH
Q 030192           60 NISFTVWDVGGQDKIRPLWRH-YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQDLPNAM-NA  136 (181)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~~~~-~~  136 (181)
                      .+.+.++|+|+.......... ....++.++++.... ..++....+....+.......+.++ -+|.|+.+..... ..
T Consensus       118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~~~~  196 (289)
T d2afhe1         118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELI  196 (289)
T ss_dssp             TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHH
T ss_pred             cCCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhhHHHH
Confidence            467889999876433322221 223567777665543 3444444443333322111234444 3778988754321 23


Q ss_pred             hHHHhhhCCC
Q 030192          137 AEITDKLGLH  146 (181)
Q Consensus       137 ~~~~~~~~~~  146 (181)
                      +++++.++..
T Consensus       197 ~~~~~~~g~~  206 (289)
T d2afhe1         197 IALANKLGTQ  206 (289)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHcCCe
Confidence            3455555543

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=80.13  E-value=0.84  Score=32.30  Aligned_cols=30  Identities=13%  Similarity=0.233  Sum_probs=23.8

Q ss_pred             HHHHHHhhhcccccEEEEEcCCCCChHHHH
Q 030192            5 FTKLFSRLFAKKEMRILMVGLDAAGKTTIL   34 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli   34 (181)
                      ..+++.+........|..-|.+|+|||-.+
T Consensus        68 ~~plv~~~l~G~n~ti~aYG~tgSGKT~Tm   97 (354)
T d1goja_          68 IKPTVDDILNGYNGTVFAYGQTGAGKSYTM   97 (354)
T ss_dssp             THHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred             HHHHHHHhhccCceeEEecccCCCCcceee
Confidence            456667777777788999999999999554